Multiple sequence alignment - TraesCS1B01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G249800 chr1B 100.000 4395 0 0 1 4395 442111706 442107312 0.000000e+00 8117.0
1 TraesCS1B01G249800 chr1A 92.794 3289 173 31 656 3917 407117345 407114094 0.000000e+00 4702.0
2 TraesCS1B01G249800 chr1A 94.231 52 3 0 3934 3985 407114094 407114043 3.640000e-11 80.5
3 TraesCS1B01G249800 chr1D 93.484 2118 106 18 656 2747 327994623 327992512 0.000000e+00 3118.0
4 TraesCS1B01G249800 chr1D 87.192 1624 119 37 2814 4395 327992512 327990936 0.000000e+00 1764.0
5 TraesCS1B01G249800 chr1D 79.167 144 21 3 1678 1813 391357597 391357455 1.680000e-14 91.6
6 TraesCS1B01G249800 chr5D 76.207 870 148 42 2313 3157 508621335 508622170 5.290000e-109 405.0
7 TraesCS1B01G249800 chr5D 90.476 126 6 3 1027 1152 508620163 508620282 1.270000e-35 161.0
8 TraesCS1B01G249800 chr5D 88.430 121 14 0 1675 1795 508620791 508620911 3.540000e-31 147.0
9 TraesCS1B01G249800 chr5D 83.505 97 15 1 3192 3288 508622408 508622503 6.050000e-14 89.8
10 TraesCS1B01G249800 chr5A 75.850 853 157 38 2304 3135 635958169 635958993 5.330000e-104 388.0
11 TraesCS1B01G249800 chr5A 81.651 218 29 7 165 373 626074211 626074426 2.100000e-38 171.0
12 TraesCS1B01G249800 chr5A 81.567 217 30 6 165 372 688864735 688864520 2.100000e-38 171.0
13 TraesCS1B01G249800 chr5A 81.308 214 34 6 165 373 485871035 485871247 7.560000e-38 169.0
14 TraesCS1B01G249800 chr5A 93.478 92 6 0 1027 1118 635957059 635957150 2.130000e-28 137.0
15 TraesCS1B01G249800 chr7A 82.326 215 31 5 165 373 700429374 700429161 3.490000e-41 180.0
16 TraesCS1B01G249800 chr7A 81.860 215 32 6 165 373 581364536 581364323 1.620000e-39 174.0
17 TraesCS1B01G249800 chr7A 81.818 209 31 5 165 367 498486990 498487197 7.560000e-38 169.0
18 TraesCS1B01G249800 chr3A 81.690 213 33 5 166 373 419475378 419475167 5.840000e-39 172.0
19 TraesCS1B01G249800 chr3A 81.690 213 32 5 165 371 582938468 582938679 2.100000e-38 171.0
20 TraesCS1B01G249800 chr4A 81.818 209 30 6 165 367 479325940 479325734 7.560000e-38 169.0
21 TraesCS1B01G249800 chr5B 81.000 200 35 3 1624 1822 638486363 638486166 5.890000e-34 156.0
22 TraesCS1B01G249800 chr5B 89.683 126 7 3 1027 1152 638486956 638486837 5.890000e-34 156.0
23 TraesCS1B01G249800 chr2B 81.457 151 20 4 1678 1820 106119311 106119161 2.780000e-22 117.0
24 TraesCS1B01G249800 chr2D 80.272 147 20 3 1675 1813 70458633 70458778 7.780000e-18 102.0
25 TraesCS1B01G249800 chr2D 79.699 133 19 3 1698 1822 69945868 69945736 6.050000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G249800 chr1B 442107312 442111706 4394 True 8117.00 8117 100.0000 1 4395 1 chr1B.!!$R1 4394
1 TraesCS1B01G249800 chr1A 407114043 407117345 3302 True 2391.25 4702 93.5125 656 3985 2 chr1A.!!$R1 3329
2 TraesCS1B01G249800 chr1D 327990936 327994623 3687 True 2441.00 3118 90.3380 656 4395 2 chr1D.!!$R2 3739
3 TraesCS1B01G249800 chr5D 508620163 508622503 2340 False 200.70 405 84.6545 1027 3288 4 chr5D.!!$F1 2261
4 TraesCS1B01G249800 chr5A 635957059 635958993 1934 False 262.50 388 84.6640 1027 3135 2 chr5A.!!$F3 2108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 460 0.038890 TGTCAATTGAATGGGGCGGA 59.961 50.0 10.35 0.00 0.00 5.54 F
461 462 0.395586 TCAATTGAATGGGGCGGAGG 60.396 55.0 5.45 0.00 0.00 4.30 F
472 473 0.404812 GGGCGGAGGGAGTAGATAGA 59.595 60.0 0.00 0.00 0.00 1.98 F
1199 1230 0.537653 TGTATCACGGCGGGATTCAA 59.462 50.0 31.36 9.83 0.00 2.69 F
1339 1372 0.612732 TCTGGGGCATGAAGGCTTTG 60.613 55.0 0.00 0.00 43.56 2.77 F
1358 1391 0.991920 GGGGGTTCTTGATCTGGTCA 59.008 55.0 0.00 0.00 34.25 4.02 F
1431 1469 1.194781 ACGAGCCACTCCATTGGACT 61.195 55.0 0.00 0.00 39.24 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1500 0.318022 GGTAAAAACAACACGGCCGG 60.318 55.000 31.76 20.69 0.00 6.13 R
1978 2079 1.086696 ATGTGTATGTCCACTTGCGC 58.913 50.000 0.00 0.00 36.30 6.09 R
2220 2357 5.774690 TGGCACTGGAATAAGAACAGAAAAT 59.225 36.000 0.00 0.00 36.17 1.82 R
3170 3422 1.768275 TCAGTGCTTCCAACTCAGGAA 59.232 47.619 0.00 0.00 45.12 3.36 R
3244 3702 4.299586 TGATGTTATGACAAGAAGGCCA 57.700 40.909 5.01 0.00 39.66 5.36 R
3378 3837 2.286418 GGCAGAGACAACAGTCAAAACG 60.286 50.000 0.00 0.00 34.69 3.60 R
3461 3923 4.512944 ACAGGCAGTGCAATATAAAGATCG 59.487 41.667 18.61 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.964223 TGAGGCGATGATAGGTCTTCC 59.036 52.381 0.00 0.00 0.00 3.46
21 22 1.964223 GAGGCGATGATAGGTCTTCCA 59.036 52.381 0.00 0.00 35.89 3.53
22 23 2.365617 GAGGCGATGATAGGTCTTCCAA 59.634 50.000 0.00 0.00 35.89 3.53
23 24 2.771943 AGGCGATGATAGGTCTTCCAAA 59.228 45.455 0.00 0.00 35.89 3.28
24 25 3.392616 AGGCGATGATAGGTCTTCCAAAT 59.607 43.478 0.00 0.00 35.89 2.32
25 26 4.593206 AGGCGATGATAGGTCTTCCAAATA 59.407 41.667 0.00 0.00 35.89 1.40
26 27 5.249393 AGGCGATGATAGGTCTTCCAAATAT 59.751 40.000 0.00 0.00 35.89 1.28
27 28 5.352569 GGCGATGATAGGTCTTCCAAATATG 59.647 44.000 0.00 0.00 35.89 1.78
53 54 9.425577 GGATGTTGTAATCTTCTATACCTAAGC 57.574 37.037 0.00 0.00 0.00 3.09
54 55 9.982651 GATGTTGTAATCTTCTATACCTAAGCA 57.017 33.333 0.00 0.00 0.00 3.91
55 56 9.988815 ATGTTGTAATCTTCTATACCTAAGCAG 57.011 33.333 0.00 0.00 0.00 4.24
56 57 7.926555 TGTTGTAATCTTCTATACCTAAGCAGC 59.073 37.037 0.00 0.00 0.00 5.25
57 58 7.841282 TGTAATCTTCTATACCTAAGCAGCT 57.159 36.000 0.00 0.00 0.00 4.24
58 59 8.935614 TGTAATCTTCTATACCTAAGCAGCTA 57.064 34.615 0.00 0.00 0.00 3.32
59 60 9.015367 TGTAATCTTCTATACCTAAGCAGCTAG 57.985 37.037 0.00 0.00 0.00 3.42
60 61 5.968528 TCTTCTATACCTAAGCAGCTAGC 57.031 43.478 6.62 6.62 46.19 3.42
72 73 3.990959 GCAGCTAGCCCCTATTATCTT 57.009 47.619 12.13 0.00 37.23 2.40
74 75 5.622346 GCAGCTAGCCCCTATTATCTTAT 57.378 43.478 12.13 0.00 37.23 1.73
75 76 5.995446 GCAGCTAGCCCCTATTATCTTATT 58.005 41.667 12.13 0.00 37.23 1.40
76 77 6.418946 GCAGCTAGCCCCTATTATCTTATTT 58.581 40.000 12.13 0.00 37.23 1.40
77 78 6.540551 GCAGCTAGCCCCTATTATCTTATTTC 59.459 42.308 12.13 0.00 37.23 2.17
78 79 7.582438 GCAGCTAGCCCCTATTATCTTATTTCT 60.582 40.741 12.13 0.00 37.23 2.52
79 80 7.984617 CAGCTAGCCCCTATTATCTTATTTCTC 59.015 40.741 12.13 0.00 0.00 2.87
80 81 7.904022 AGCTAGCCCCTATTATCTTATTTCTCT 59.096 37.037 12.13 0.00 0.00 3.10
81 82 8.544622 GCTAGCCCCTATTATCTTATTTCTCTT 58.455 37.037 2.29 0.00 0.00 2.85
95 96 9.577110 TCTTATTTCTCTTAAAATGCAAGCATG 57.423 29.630 8.50 0.00 36.68 4.06
96 97 9.362539 CTTATTTCTCTTAAAATGCAAGCATGT 57.637 29.630 8.50 0.00 36.68 3.21
97 98 7.823149 ATTTCTCTTAAAATGCAAGCATGTC 57.177 32.000 8.50 0.00 36.68 3.06
98 99 5.963176 TCTCTTAAAATGCAAGCATGTCA 57.037 34.783 8.50 0.00 36.68 3.58
99 100 6.519679 TCTCTTAAAATGCAAGCATGTCAT 57.480 33.333 8.50 0.00 36.68 3.06
100 101 6.558009 TCTCTTAAAATGCAAGCATGTCATC 58.442 36.000 8.50 0.00 36.68 2.92
101 102 6.376299 TCTCTTAAAATGCAAGCATGTCATCT 59.624 34.615 8.50 0.00 36.68 2.90
102 103 6.558009 TCTTAAAATGCAAGCATGTCATCTC 58.442 36.000 8.50 0.00 36.68 2.75
103 104 3.795623 AAATGCAAGCATGTCATCTCC 57.204 42.857 8.50 0.00 36.68 3.71
104 105 2.730934 ATGCAAGCATGTCATCTCCT 57.269 45.000 6.76 0.00 35.03 3.69
105 106 1.746470 TGCAAGCATGTCATCTCCTG 58.254 50.000 0.00 0.00 0.00 3.86
106 107 0.381089 GCAAGCATGTCATCTCCTGC 59.619 55.000 0.00 0.00 34.85 4.85
107 108 1.746470 CAAGCATGTCATCTCCTGCA 58.254 50.000 0.00 0.00 37.09 4.41
108 109 2.089201 CAAGCATGTCATCTCCTGCAA 58.911 47.619 0.00 0.00 37.09 4.08
109 110 1.747709 AGCATGTCATCTCCTGCAAC 58.252 50.000 0.00 0.00 37.09 4.17
110 111 1.281287 AGCATGTCATCTCCTGCAACT 59.719 47.619 0.00 0.00 37.09 3.16
111 112 2.089980 GCATGTCATCTCCTGCAACTT 58.910 47.619 0.00 0.00 34.77 2.66
112 113 2.159421 GCATGTCATCTCCTGCAACTTG 60.159 50.000 0.00 0.00 34.77 3.16
113 114 1.527034 TGTCATCTCCTGCAACTTGC 58.473 50.000 6.82 6.82 45.29 4.01
125 126 2.068519 GCAACTTGCATGGTAAAAGCC 58.931 47.619 8.97 0.00 44.26 4.35
126 127 2.687370 CAACTTGCATGGTAAAAGCCC 58.313 47.619 4.44 0.00 0.00 5.19
127 128 2.008242 ACTTGCATGGTAAAAGCCCA 57.992 45.000 4.44 0.00 36.16 5.36
128 129 1.618343 ACTTGCATGGTAAAAGCCCAC 59.382 47.619 4.44 0.00 34.07 4.61
129 130 0.972883 TTGCATGGTAAAAGCCCACC 59.027 50.000 0.00 0.00 34.07 4.61
130 131 1.247419 TGCATGGTAAAAGCCCACCG 61.247 55.000 0.00 0.00 37.66 4.94
131 132 1.510844 CATGGTAAAAGCCCACCGC 59.489 57.895 0.00 0.00 37.66 5.68
132 133 1.075836 ATGGTAAAAGCCCACCGCA 59.924 52.632 0.00 0.00 41.38 5.69
133 134 0.540830 ATGGTAAAAGCCCACCGCAA 60.541 50.000 0.00 0.00 41.38 4.85
134 135 1.287815 GGTAAAAGCCCACCGCAAC 59.712 57.895 0.00 0.00 41.38 4.17
135 136 1.457009 GGTAAAAGCCCACCGCAACA 61.457 55.000 0.00 0.00 41.38 3.33
136 137 0.601057 GTAAAAGCCCACCGCAACAT 59.399 50.000 0.00 0.00 41.38 2.71
137 138 0.600557 TAAAAGCCCACCGCAACATG 59.399 50.000 0.00 0.00 41.38 3.21
138 139 1.398958 AAAAGCCCACCGCAACATGT 61.399 50.000 0.00 0.00 41.38 3.21
139 140 0.538516 AAAGCCCACCGCAACATGTA 60.539 50.000 0.00 0.00 41.38 2.29
140 141 0.538516 AAGCCCACCGCAACATGTAA 60.539 50.000 0.00 0.00 41.38 2.41
141 142 1.211709 GCCCACCGCAACATGTAAC 59.788 57.895 0.00 0.00 37.47 2.50
142 143 1.880186 CCCACCGCAACATGTAACC 59.120 57.895 0.00 0.00 0.00 2.85
143 144 0.891449 CCCACCGCAACATGTAACCA 60.891 55.000 0.00 0.00 0.00 3.67
144 145 1.173043 CCACCGCAACATGTAACCAT 58.827 50.000 0.00 0.00 0.00 3.55
158 159 5.818136 TGTAACCATGCATAGAAGAAAGC 57.182 39.130 0.00 0.00 0.00 3.51
159 160 4.640201 TGTAACCATGCATAGAAGAAAGCC 59.360 41.667 0.00 0.00 0.00 4.35
160 161 3.370840 ACCATGCATAGAAGAAAGCCA 57.629 42.857 0.00 0.00 0.00 4.75
161 162 3.019564 ACCATGCATAGAAGAAAGCCAC 58.980 45.455 0.00 0.00 0.00 5.01
162 163 2.360165 CCATGCATAGAAGAAAGCCACC 59.640 50.000 0.00 0.00 0.00 4.61
163 164 3.285484 CATGCATAGAAGAAAGCCACCT 58.715 45.455 0.00 0.00 0.00 4.00
164 165 3.439857 TGCATAGAAGAAAGCCACCTT 57.560 42.857 0.00 0.00 0.00 3.50
165 166 4.568072 TGCATAGAAGAAAGCCACCTTA 57.432 40.909 0.00 0.00 0.00 2.69
166 167 4.917385 TGCATAGAAGAAAGCCACCTTAA 58.083 39.130 0.00 0.00 0.00 1.85
167 168 4.700213 TGCATAGAAGAAAGCCACCTTAAC 59.300 41.667 0.00 0.00 0.00 2.01
168 169 4.700213 GCATAGAAGAAAGCCACCTTAACA 59.300 41.667 0.00 0.00 0.00 2.41
169 170 5.358160 GCATAGAAGAAAGCCACCTTAACAT 59.642 40.000 0.00 0.00 0.00 2.71
170 171 6.678900 GCATAGAAGAAAGCCACCTTAACATG 60.679 42.308 0.00 0.00 0.00 3.21
171 172 3.507622 AGAAGAAAGCCACCTTAACATGC 59.492 43.478 0.00 0.00 0.00 4.06
172 173 2.875296 AGAAAGCCACCTTAACATGCA 58.125 42.857 0.00 0.00 0.00 3.96
173 174 3.434309 AGAAAGCCACCTTAACATGCAT 58.566 40.909 0.00 0.00 0.00 3.96
174 175 3.194116 AGAAAGCCACCTTAACATGCATG 59.806 43.478 25.09 25.09 0.00 4.06
175 176 2.512692 AGCCACCTTAACATGCATGA 57.487 45.000 32.75 9.00 0.00 3.07
176 177 2.372264 AGCCACCTTAACATGCATGAG 58.628 47.619 32.75 18.96 0.00 2.90
177 178 2.025981 AGCCACCTTAACATGCATGAGA 60.026 45.455 32.75 16.59 0.00 3.27
178 179 2.754552 GCCACCTTAACATGCATGAGAA 59.245 45.455 32.75 22.10 0.00 2.87
179 180 3.382546 GCCACCTTAACATGCATGAGAAT 59.617 43.478 32.75 16.92 0.00 2.40
180 181 4.142093 GCCACCTTAACATGCATGAGAATT 60.142 41.667 32.75 18.24 0.00 2.17
181 182 5.625197 GCCACCTTAACATGCATGAGAATTT 60.625 40.000 32.75 17.88 0.00 1.82
182 183 6.405731 GCCACCTTAACATGCATGAGAATTTA 60.406 38.462 32.75 16.85 0.00 1.40
183 184 6.974622 CCACCTTAACATGCATGAGAATTTAC 59.025 38.462 32.75 0.00 0.00 2.01
184 185 7.362834 CCACCTTAACATGCATGAGAATTTACA 60.363 37.037 32.75 10.05 0.00 2.41
185 186 8.192774 CACCTTAACATGCATGAGAATTTACAT 58.807 33.333 32.75 3.33 0.00 2.29
186 187 8.752187 ACCTTAACATGCATGAGAATTTACATT 58.248 29.630 32.75 14.37 0.00 2.71
187 188 9.241317 CCTTAACATGCATGAGAATTTACATTC 57.759 33.333 32.75 0.00 39.45 2.67
240 241 9.988815 ATTTTACAACCATACAACAATTAAGCA 57.011 25.926 0.00 0.00 0.00 3.91
241 242 8.804688 TTTACAACCATACAACAATTAAGCAC 57.195 30.769 0.00 0.00 0.00 4.40
242 243 6.398234 ACAACCATACAACAATTAAGCACA 57.602 33.333 0.00 0.00 0.00 4.57
243 244 6.810911 ACAACCATACAACAATTAAGCACAA 58.189 32.000 0.00 0.00 0.00 3.33
244 245 7.441017 ACAACCATACAACAATTAAGCACAAT 58.559 30.769 0.00 0.00 0.00 2.71
245 246 8.580720 ACAACCATACAACAATTAAGCACAATA 58.419 29.630 0.00 0.00 0.00 1.90
246 247 9.416794 CAACCATACAACAATTAAGCACAATAA 57.583 29.630 0.00 0.00 0.00 1.40
247 248 9.988815 AACCATACAACAATTAAGCACAATAAA 57.011 25.926 0.00 0.00 0.00 1.40
252 253 8.243289 ACAACAATTAAGCACAATAAATCTGC 57.757 30.769 0.00 0.00 0.00 4.26
253 254 7.871973 ACAACAATTAAGCACAATAAATCTGCA 59.128 29.630 0.00 0.00 33.06 4.41
254 255 8.875803 CAACAATTAAGCACAATAAATCTGCAT 58.124 29.630 0.00 0.00 33.06 3.96
255 256 9.439500 AACAATTAAGCACAATAAATCTGCATT 57.561 25.926 0.00 0.00 33.06 3.56
256 257 9.439500 ACAATTAAGCACAATAAATCTGCATTT 57.561 25.926 0.00 0.00 36.18 2.32
262 263 9.492973 AAGCACAATAAATCTGCATTTTTAGTT 57.507 25.926 0.00 0.00 33.95 2.24
263 264 9.143631 AGCACAATAAATCTGCATTTTTAGTTC 57.856 29.630 0.00 0.00 33.95 3.01
264 265 9.143631 GCACAATAAATCTGCATTTTTAGTTCT 57.856 29.630 0.00 0.00 33.95 3.01
272 273 9.507329 AATCTGCATTTTTAGTTCTACTTCTCA 57.493 29.630 0.00 0.00 0.00 3.27
273 274 9.678260 ATCTGCATTTTTAGTTCTACTTCTCAT 57.322 29.630 0.00 0.00 0.00 2.90
306 307 9.985730 ACTTCAAATATTCATGTTTCACACAAT 57.014 25.926 0.00 0.00 39.50 2.71
308 309 9.978044 TTCAAATATTCATGTTTCACACAATCA 57.022 25.926 0.00 0.00 39.50 2.57
309 310 9.978044 TCAAATATTCATGTTTCACACAATCAA 57.022 25.926 0.00 0.00 39.50 2.57
358 359 3.276882 CACAAAAACGTGTGGGGTATC 57.723 47.619 0.00 0.00 44.29 2.24
359 360 2.619177 CACAAAAACGTGTGGGGTATCA 59.381 45.455 0.00 0.00 44.29 2.15
360 361 3.254657 CACAAAAACGTGTGGGGTATCAT 59.745 43.478 0.00 0.00 44.29 2.45
361 362 4.456222 CACAAAAACGTGTGGGGTATCATA 59.544 41.667 0.00 0.00 44.29 2.15
362 363 5.124776 CACAAAAACGTGTGGGGTATCATAT 59.875 40.000 0.00 0.00 44.29 1.78
363 364 6.316640 CACAAAAACGTGTGGGGTATCATATA 59.683 38.462 0.00 0.00 44.29 0.86
364 365 6.540914 ACAAAAACGTGTGGGGTATCATATAG 59.459 38.462 0.00 0.00 0.00 1.31
365 366 5.881923 AAACGTGTGGGGTATCATATAGT 57.118 39.130 0.00 0.00 0.00 2.12
366 367 5.881923 AACGTGTGGGGTATCATATAGTT 57.118 39.130 0.00 0.00 0.00 2.24
367 368 5.881923 ACGTGTGGGGTATCATATAGTTT 57.118 39.130 0.00 0.00 0.00 2.66
368 369 6.243216 ACGTGTGGGGTATCATATAGTTTT 57.757 37.500 0.00 0.00 0.00 2.43
369 370 7.364149 ACGTGTGGGGTATCATATAGTTTTA 57.636 36.000 0.00 0.00 0.00 1.52
370 371 7.794041 ACGTGTGGGGTATCATATAGTTTTAA 58.206 34.615 0.00 0.00 0.00 1.52
371 372 8.434392 ACGTGTGGGGTATCATATAGTTTTAAT 58.566 33.333 0.00 0.00 0.00 1.40
372 373 9.932207 CGTGTGGGGTATCATATAGTTTTAATA 57.068 33.333 0.00 0.00 0.00 0.98
382 383 8.130671 TCATATAGTTTTAATACTCCCTCCGG 57.869 38.462 1.52 0.00 0.00 5.14
383 384 3.555527 AGTTTTAATACTCCCTCCGGC 57.444 47.619 0.00 0.00 0.00 6.13
384 385 2.172082 AGTTTTAATACTCCCTCCGGCC 59.828 50.000 0.00 0.00 0.00 6.13
385 386 1.134228 TTTAATACTCCCTCCGGCCC 58.866 55.000 0.00 0.00 0.00 5.80
386 387 0.266753 TTAATACTCCCTCCGGCCCT 59.733 55.000 0.00 0.00 0.00 5.19
387 388 0.178941 TAATACTCCCTCCGGCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
388 389 2.252012 AATACTCCCTCCGGCCCTCA 62.252 60.000 0.00 0.00 0.00 3.86
389 390 2.037304 ATACTCCCTCCGGCCCTCAT 62.037 60.000 0.00 0.00 0.00 2.90
390 391 2.252012 TACTCCCTCCGGCCCTCATT 62.252 60.000 0.00 0.00 0.00 2.57
391 392 1.459539 CTCCCTCCGGCCCTCATTA 60.460 63.158 0.00 0.00 0.00 1.90
392 393 1.003704 TCCCTCCGGCCCTCATTAA 59.996 57.895 0.00 0.00 0.00 1.40
393 394 1.148498 CCCTCCGGCCCTCATTAAC 59.852 63.158 0.00 0.00 0.00 2.01
394 395 1.345715 CCCTCCGGCCCTCATTAACT 61.346 60.000 0.00 0.00 0.00 2.24
395 396 0.179045 CCTCCGGCCCTCATTAACTG 60.179 60.000 0.00 0.00 0.00 3.16
396 397 0.541863 CTCCGGCCCTCATTAACTGT 59.458 55.000 0.00 0.00 0.00 3.55
397 398 0.539986 TCCGGCCCTCATTAACTGTC 59.460 55.000 0.00 0.00 0.00 3.51
398 399 0.810031 CCGGCCCTCATTAACTGTCG 60.810 60.000 0.00 0.00 0.00 4.35
399 400 1.429148 CGGCCCTCATTAACTGTCGC 61.429 60.000 0.00 0.00 0.00 5.19
400 401 1.429148 GGCCCTCATTAACTGTCGCG 61.429 60.000 0.00 0.00 0.00 5.87
401 402 1.429148 GCCCTCATTAACTGTCGCGG 61.429 60.000 6.13 0.00 0.00 6.46
402 403 1.429148 CCCTCATTAACTGTCGCGGC 61.429 60.000 2.29 2.29 0.00 6.53
403 404 1.429148 CCTCATTAACTGTCGCGGCC 61.429 60.000 8.89 0.00 0.00 6.13
404 405 0.460284 CTCATTAACTGTCGCGGCCT 60.460 55.000 8.89 0.00 0.00 5.19
405 406 0.818938 TCATTAACTGTCGCGGCCTA 59.181 50.000 8.89 0.00 0.00 3.93
406 407 1.411246 TCATTAACTGTCGCGGCCTAT 59.589 47.619 8.89 0.00 0.00 2.57
407 408 2.624364 TCATTAACTGTCGCGGCCTATA 59.376 45.455 8.89 0.00 0.00 1.31
408 409 3.068448 TCATTAACTGTCGCGGCCTATAA 59.932 43.478 8.89 4.87 0.00 0.98
409 410 3.523606 TTAACTGTCGCGGCCTATAAA 57.476 42.857 8.89 0.00 0.00 1.40
410 411 2.389962 AACTGTCGCGGCCTATAAAA 57.610 45.000 8.89 0.00 0.00 1.52
411 412 2.389962 ACTGTCGCGGCCTATAAAAA 57.610 45.000 8.89 0.00 0.00 1.94
432 433 3.344703 CCACTCCTTGGCATGTGAA 57.655 52.632 10.52 0.00 39.07 3.18
433 434 1.843368 CCACTCCTTGGCATGTGAAT 58.157 50.000 10.52 0.00 39.07 2.57
434 435 1.475280 CCACTCCTTGGCATGTGAATG 59.525 52.381 10.52 3.75 39.07 2.67
435 436 2.439409 CACTCCTTGGCATGTGAATGA 58.561 47.619 0.00 0.00 32.72 2.57
436 437 2.422479 CACTCCTTGGCATGTGAATGAG 59.578 50.000 0.00 2.56 32.72 2.90
437 438 1.404391 CTCCTTGGCATGTGAATGAGC 59.596 52.381 0.00 0.00 0.00 4.26
440 441 3.909662 GGCATGTGAATGAGCCGT 58.090 55.556 0.00 0.00 37.41 5.68
441 442 1.430632 GGCATGTGAATGAGCCGTG 59.569 57.895 0.00 0.00 37.41 4.94
442 443 1.308069 GGCATGTGAATGAGCCGTGT 61.308 55.000 0.00 0.00 37.41 4.49
443 444 0.097674 GCATGTGAATGAGCCGTGTC 59.902 55.000 0.00 0.00 0.00 3.67
444 445 1.441738 CATGTGAATGAGCCGTGTCA 58.558 50.000 0.00 0.00 0.00 3.58
445 446 1.805943 CATGTGAATGAGCCGTGTCAA 59.194 47.619 0.00 0.00 0.00 3.18
446 447 2.183478 TGTGAATGAGCCGTGTCAAT 57.817 45.000 0.00 0.00 0.00 2.57
447 448 2.503331 TGTGAATGAGCCGTGTCAATT 58.497 42.857 0.00 0.00 0.00 2.32
448 449 2.226200 TGTGAATGAGCCGTGTCAATTG 59.774 45.455 0.00 0.00 0.00 2.32
449 450 2.483877 GTGAATGAGCCGTGTCAATTGA 59.516 45.455 3.38 3.38 0.00 2.57
450 451 3.058293 GTGAATGAGCCGTGTCAATTGAA 60.058 43.478 10.35 0.00 0.00 2.69
451 452 3.758023 TGAATGAGCCGTGTCAATTGAAT 59.242 39.130 10.35 0.00 0.00 2.57
452 453 3.770263 ATGAGCCGTGTCAATTGAATG 57.230 42.857 10.35 6.33 0.00 2.67
453 454 1.811965 TGAGCCGTGTCAATTGAATGG 59.188 47.619 10.35 15.17 0.00 3.16
454 455 1.133025 GAGCCGTGTCAATTGAATGGG 59.867 52.381 10.35 12.04 0.00 4.00
455 456 0.173255 GCCGTGTCAATTGAATGGGG 59.827 55.000 10.35 10.29 0.00 4.96
456 457 0.173255 CCGTGTCAATTGAATGGGGC 59.827 55.000 10.35 0.00 0.00 5.80
457 458 0.179166 CGTGTCAATTGAATGGGGCG 60.179 55.000 10.35 5.14 0.00 6.13
458 459 0.173255 GTGTCAATTGAATGGGGCGG 59.827 55.000 10.35 0.00 0.00 6.13
459 460 0.038890 TGTCAATTGAATGGGGCGGA 59.961 50.000 10.35 0.00 0.00 5.54
460 461 0.740737 GTCAATTGAATGGGGCGGAG 59.259 55.000 10.35 0.00 0.00 4.63
461 462 0.395586 TCAATTGAATGGGGCGGAGG 60.396 55.000 5.45 0.00 0.00 4.30
462 463 1.076044 AATTGAATGGGGCGGAGGG 60.076 57.895 0.00 0.00 0.00 4.30
463 464 1.580066 AATTGAATGGGGCGGAGGGA 61.580 55.000 0.00 0.00 0.00 4.20
464 465 1.999634 ATTGAATGGGGCGGAGGGAG 62.000 60.000 0.00 0.00 0.00 4.30
465 466 3.090532 GAATGGGGCGGAGGGAGT 61.091 66.667 0.00 0.00 0.00 3.85
466 467 1.764854 GAATGGGGCGGAGGGAGTA 60.765 63.158 0.00 0.00 0.00 2.59
467 468 1.759459 GAATGGGGCGGAGGGAGTAG 61.759 65.000 0.00 0.00 0.00 2.57
468 469 2.252012 AATGGGGCGGAGGGAGTAGA 62.252 60.000 0.00 0.00 0.00 2.59
469 470 2.037304 ATGGGGCGGAGGGAGTAGAT 62.037 60.000 0.00 0.00 0.00 1.98
470 471 1.365894 TGGGGCGGAGGGAGTAGATA 61.366 60.000 0.00 0.00 0.00 1.98
471 472 0.612453 GGGGCGGAGGGAGTAGATAG 60.612 65.000 0.00 0.00 0.00 2.08
472 473 0.404812 GGGCGGAGGGAGTAGATAGA 59.595 60.000 0.00 0.00 0.00 1.98
473 474 1.536940 GGCGGAGGGAGTAGATAGAC 58.463 60.000 0.00 0.00 0.00 2.59
474 475 1.074244 GGCGGAGGGAGTAGATAGACT 59.926 57.143 0.00 0.00 0.00 3.24
475 476 2.489437 GGCGGAGGGAGTAGATAGACTT 60.489 54.545 0.00 0.00 0.00 3.01
476 477 3.224269 GCGGAGGGAGTAGATAGACTTT 58.776 50.000 0.00 0.00 0.00 2.66
477 478 3.253921 GCGGAGGGAGTAGATAGACTTTC 59.746 52.174 0.00 0.00 0.00 2.62
478 479 3.822167 CGGAGGGAGTAGATAGACTTTCC 59.178 52.174 0.00 0.00 33.34 3.13
479 480 3.822167 GGAGGGAGTAGATAGACTTTCCG 59.178 52.174 0.00 0.00 34.25 4.30
480 481 4.463070 GAGGGAGTAGATAGACTTTCCGT 58.537 47.826 0.00 0.00 34.25 4.69
481 482 5.455899 GGAGGGAGTAGATAGACTTTCCGTA 60.456 48.000 0.00 0.00 34.25 4.02
482 483 6.011122 AGGGAGTAGATAGACTTTCCGTAA 57.989 41.667 0.00 0.00 34.25 3.18
483 484 6.430007 AGGGAGTAGATAGACTTTCCGTAAA 58.570 40.000 0.00 0.00 34.25 2.01
484 485 6.894103 AGGGAGTAGATAGACTTTCCGTAAAA 59.106 38.462 0.00 0.00 34.25 1.52
485 486 7.398332 AGGGAGTAGATAGACTTTCCGTAAAAA 59.602 37.037 0.00 0.00 34.25 1.94
486 487 8.202811 GGGAGTAGATAGACTTTCCGTAAAAAT 58.797 37.037 0.00 0.00 34.25 1.82
487 488 9.247126 GGAGTAGATAGACTTTCCGTAAAAATC 57.753 37.037 0.00 0.00 0.00 2.17
488 489 9.247126 GAGTAGATAGACTTTCCGTAAAAATCC 57.753 37.037 0.00 0.00 0.00 3.01
489 490 8.755977 AGTAGATAGACTTTCCGTAAAAATCCA 58.244 33.333 0.00 0.00 0.00 3.41
490 491 9.374838 GTAGATAGACTTTCCGTAAAAATCCAA 57.625 33.333 0.00 0.00 0.00 3.53
491 492 8.857694 AGATAGACTTTCCGTAAAAATCCAAA 57.142 30.769 0.00 0.00 0.00 3.28
492 493 8.947115 AGATAGACTTTCCGTAAAAATCCAAAG 58.053 33.333 0.00 0.00 0.00 2.77
493 494 6.954487 AGACTTTCCGTAAAAATCCAAAGT 57.046 33.333 0.00 0.00 36.91 2.66
494 495 7.342769 AGACTTTCCGTAAAAATCCAAAGTT 57.657 32.000 0.00 0.00 34.89 2.66
495 496 7.778083 AGACTTTCCGTAAAAATCCAAAGTTT 58.222 30.769 0.00 0.00 34.89 2.66
496 497 8.255206 AGACTTTCCGTAAAAATCCAAAGTTTT 58.745 29.630 0.00 0.00 34.89 2.43
497 498 8.415192 ACTTTCCGTAAAAATCCAAAGTTTTC 57.585 30.769 0.00 0.00 34.71 2.29
498 499 8.255206 ACTTTCCGTAAAAATCCAAAGTTTTCT 58.745 29.630 0.00 0.00 34.71 2.52
499 500 9.093970 CTTTCCGTAAAAATCCAAAGTTTTCTT 57.906 29.630 0.00 0.00 42.58 2.52
510 511 7.754851 TCCAAAGTTTTCTTAATACTCCACC 57.245 36.000 0.00 0.00 39.48 4.61
511 512 6.717997 TCCAAAGTTTTCTTAATACTCCACCC 59.282 38.462 0.00 0.00 39.48 4.61
512 513 6.492087 CCAAAGTTTTCTTAATACTCCACCCA 59.508 38.462 0.00 0.00 39.48 4.51
513 514 7.014808 CCAAAGTTTTCTTAATACTCCACCCAA 59.985 37.037 0.00 0.00 39.48 4.12
514 515 8.417884 CAAAGTTTTCTTAATACTCCACCCAAA 58.582 33.333 0.00 0.00 39.48 3.28
515 516 7.761038 AGTTTTCTTAATACTCCACCCAAAG 57.239 36.000 0.00 0.00 0.00 2.77
516 517 6.719829 AGTTTTCTTAATACTCCACCCAAAGG 59.280 38.462 0.00 0.00 40.04 3.11
615 616 9.457436 TTTTTAGAAACAGATATCCTACAACCC 57.543 33.333 0.00 0.00 0.00 4.11
616 617 7.743116 TTAGAAACAGATATCCTACAACCCA 57.257 36.000 0.00 0.00 0.00 4.51
617 618 6.636454 AGAAACAGATATCCTACAACCCAA 57.364 37.500 0.00 0.00 0.00 4.12
618 619 7.213178 AGAAACAGATATCCTACAACCCAAT 57.787 36.000 0.00 0.00 0.00 3.16
619 620 8.331931 AGAAACAGATATCCTACAACCCAATA 57.668 34.615 0.00 0.00 0.00 1.90
620 621 8.432805 AGAAACAGATATCCTACAACCCAATAG 58.567 37.037 0.00 0.00 0.00 1.73
621 622 6.688073 ACAGATATCCTACAACCCAATAGG 57.312 41.667 0.00 0.00 39.58 2.57
635 636 4.550076 CCAATAGGGCCATTTGTTTTGA 57.450 40.909 6.18 0.00 0.00 2.69
636 637 4.506758 CCAATAGGGCCATTTGTTTTGAG 58.493 43.478 6.18 0.00 0.00 3.02
637 638 4.222588 CCAATAGGGCCATTTGTTTTGAGA 59.777 41.667 6.18 0.00 0.00 3.27
638 639 5.279910 CCAATAGGGCCATTTGTTTTGAGAA 60.280 40.000 6.18 0.00 0.00 2.87
639 640 6.408869 CAATAGGGCCATTTGTTTTGAGAAT 58.591 36.000 6.18 0.00 0.00 2.40
640 641 7.364585 CCAATAGGGCCATTTGTTTTGAGAATA 60.365 37.037 6.18 0.00 0.00 1.75
641 642 5.405935 AGGGCCATTTGTTTTGAGAATAC 57.594 39.130 6.18 0.00 0.00 1.89
642 643 4.837860 AGGGCCATTTGTTTTGAGAATACA 59.162 37.500 6.18 0.00 0.00 2.29
643 644 5.306678 AGGGCCATTTGTTTTGAGAATACAA 59.693 36.000 6.18 0.00 0.00 2.41
644 645 5.408299 GGGCCATTTGTTTTGAGAATACAAC 59.592 40.000 4.39 0.00 32.00 3.32
645 646 5.408299 GGCCATTTGTTTTGAGAATACAACC 59.592 40.000 0.00 0.00 32.00 3.77
646 647 5.408299 GCCATTTGTTTTGAGAATACAACCC 59.592 40.000 0.00 0.00 32.00 4.11
647 648 6.520272 CCATTTGTTTTGAGAATACAACCCA 58.480 36.000 0.00 0.00 32.00 4.51
648 649 6.989169 CCATTTGTTTTGAGAATACAACCCAA 59.011 34.615 0.00 0.00 32.00 4.12
649 650 7.661027 CCATTTGTTTTGAGAATACAACCCAAT 59.339 33.333 0.00 0.00 32.00 3.16
650 651 9.703892 CATTTGTTTTGAGAATACAACCCAATA 57.296 29.630 0.00 0.00 32.00 1.90
651 652 9.927668 ATTTGTTTTGAGAATACAACCCAATAG 57.072 29.630 0.00 0.00 32.00 1.73
652 653 7.461182 TGTTTTGAGAATACAACCCAATAGG 57.539 36.000 0.00 0.00 43.78 2.57
681 682 3.340928 GCTACTTTACGGTCCACCAAAT 58.659 45.455 0.00 0.00 35.14 2.32
682 683 3.754850 GCTACTTTACGGTCCACCAAATT 59.245 43.478 0.00 0.00 35.14 1.82
683 684 4.216902 GCTACTTTACGGTCCACCAAATTT 59.783 41.667 0.00 0.00 35.14 1.82
684 685 5.278610 GCTACTTTACGGTCCACCAAATTTT 60.279 40.000 0.00 0.00 35.14 1.82
685 686 5.601583 ACTTTACGGTCCACCAAATTTTT 57.398 34.783 0.00 0.00 35.14 1.94
710 714 4.584325 TCCAAGTTCAAAGAATGGAACCTG 59.416 41.667 0.00 0.00 43.37 4.00
712 716 2.554032 AGTTCAAAGAATGGAACCTGCG 59.446 45.455 0.00 0.00 43.37 5.18
736 740 2.653726 CCATCCGATCCCAATTCAACA 58.346 47.619 0.00 0.00 0.00 3.33
756 760 6.038603 TCAACAAACAGATATGGATTAGCTGC 59.961 38.462 0.00 0.00 46.17 5.25
803 807 2.268298 CGCATTAACACCGAGCTTACT 58.732 47.619 0.00 0.00 0.00 2.24
804 808 2.029244 CGCATTAACACCGAGCTTACTG 59.971 50.000 0.00 0.00 0.00 2.74
887 891 2.724977 TCGGAAGCTAATATCCAGCG 57.275 50.000 3.16 0.00 43.97 5.18
958 964 1.066858 TCTGTTCAGTCCTCGCAATCC 60.067 52.381 0.00 0.00 0.00 3.01
963 969 0.809241 CAGTCCTCGCAATCCTGAGC 60.809 60.000 0.00 0.00 0.00 4.26
1018 1024 2.920384 GGAGAGAGATCCCCGCCC 60.920 72.222 0.00 0.00 32.79 6.13
1179 1189 5.260900 GTTTTCGGTAGATGTATTTTCGGC 58.739 41.667 0.00 0.00 0.00 5.54
1186 1196 6.220930 GGTAGATGTATTTTCGGCTGTATCA 58.779 40.000 0.00 0.00 0.00 2.15
1199 1230 0.537653 TGTATCACGGCGGGATTCAA 59.462 50.000 31.36 9.83 0.00 2.69
1260 1293 2.798283 CTGAAAGACGCGGTTCTGTTTA 59.202 45.455 12.47 0.00 34.07 2.01
1314 1347 3.948473 GGCAGGGAGGATCTAAAGAAAAC 59.052 47.826 0.00 0.00 33.73 2.43
1321 1354 8.268605 AGGGAGGATCTAAAGAAAACAGTAATC 58.731 37.037 0.00 0.00 33.73 1.75
1339 1372 0.612732 TCTGGGGCATGAAGGCTTTG 60.613 55.000 0.00 0.00 43.56 2.77
1358 1391 0.991920 GGGGGTTCTTGATCTGGTCA 59.008 55.000 0.00 0.00 34.25 4.02
1431 1469 1.194781 ACGAGCCACTCCATTGGACT 61.195 55.000 0.00 0.00 39.24 3.85
1462 1500 6.295405 GCCTTAGAGGACTATACTGGGATTTC 60.295 46.154 0.00 0.00 37.67 2.17
1487 1525 3.316029 GCCGTGTTGTTTTTACCCTACTT 59.684 43.478 0.00 0.00 0.00 2.24
1489 1527 5.560760 GCCGTGTTGTTTTTACCCTACTTAC 60.561 44.000 0.00 0.00 0.00 2.34
1490 1528 5.759763 CCGTGTTGTTTTTACCCTACTTACT 59.240 40.000 0.00 0.00 0.00 2.24
1491 1529 6.928492 CCGTGTTGTTTTTACCCTACTTACTA 59.072 38.462 0.00 0.00 0.00 1.82
1493 1531 7.653311 CGTGTTGTTTTTACCCTACTTACTAGT 59.347 37.037 0.00 0.00 38.44 2.57
1495 1533 8.703743 TGTTGTTTTTACCCTACTTACTAGTGA 58.296 33.333 5.39 0.00 35.78 3.41
1510 1575 9.672673 ACTTACTAGTGATATTGCTTGTTGATT 57.327 29.630 5.39 0.00 31.99 2.57
1563 1630 3.836562 TCGTAATATAGGGAAAGAGGGGC 59.163 47.826 0.00 0.00 0.00 5.80
1565 1632 4.322801 CGTAATATAGGGAAAGAGGGGCAG 60.323 50.000 0.00 0.00 0.00 4.85
1619 1706 5.360999 GGGGTTTTGCTGCTCTTAGATATTT 59.639 40.000 0.00 0.00 0.00 1.40
1651 1738 6.198650 TGATTGCAACAATGTTCTCATAGG 57.801 37.500 0.00 0.00 33.49 2.57
1661 1748 7.128077 ACAATGTTCTCATAGGGGAATTCATT 58.872 34.615 7.93 0.00 33.49 2.57
1744 1831 2.184322 GCGACAGGGAGCGAATCA 59.816 61.111 0.00 0.00 0.00 2.57
1880 1981 5.975988 TCTTGAGGGCCATTTTAGATACT 57.024 39.130 6.18 0.00 0.00 2.12
1905 2006 6.834451 TCTCTAATTCGACTTTATCCTCTGGT 59.166 38.462 0.00 0.00 0.00 4.00
2091 2204 6.294176 GGTGGATTATTCCCATGATTTTCTCG 60.294 42.308 0.00 0.00 41.83 4.04
2175 2312 8.768955 CCTTTAAGATCTTGGTCTAATTCATCG 58.231 37.037 18.47 0.00 0.00 3.84
2220 2357 1.203038 ACCACCATGCCATGTTCTCAA 60.203 47.619 3.63 0.00 0.00 3.02
2247 2393 4.943705 TCTGTTCTTATTCCAGTGCCATTC 59.056 41.667 0.00 0.00 0.00 2.67
2302 2448 3.101643 TGCACTAGTGTCCCTGTATCT 57.898 47.619 23.44 0.00 0.00 1.98
2428 2584 7.450903 ACTCAAGTATTGTACTTTGTAAGCCT 58.549 34.615 0.00 0.00 46.27 4.58
2488 2650 7.826744 TGTCCTATATTTCATTGTGTGTGCTTA 59.173 33.333 0.00 0.00 0.00 3.09
2801 3048 6.948309 ACTATCCAAGTAGTTTTTGCAATCCT 59.052 34.615 0.00 0.00 36.36 3.24
2853 3100 2.373335 TTTACATTGGGTGCCACTGT 57.627 45.000 0.00 0.00 46.54 3.55
3111 3363 2.676342 GTGGGTTACGATTGTGATGACC 59.324 50.000 0.00 0.00 0.00 4.02
3136 3388 5.542779 AGAAGCCGATCATTAAGGTATGTC 58.457 41.667 0.00 0.00 0.00 3.06
3141 3393 7.680730 AGCCGATCATTAAGGTATGTCTATTT 58.319 34.615 0.00 0.00 0.00 1.40
3170 3422 8.492415 TTATTAAGTACTGATGACCAGCCTAT 57.508 34.615 0.00 0.00 46.81 2.57
3244 3702 2.401766 CCTTCTGATTGGCGCGCTT 61.402 57.895 32.29 16.38 0.00 4.68
3282 3740 3.496130 ACATCAAAAGAGTGAAGCTGTCG 59.504 43.478 0.00 0.00 0.00 4.35
3378 3837 8.166422 ACCGAATGGAAGATGTATTTTTATCC 57.834 34.615 0.00 0.00 39.21 2.59
3429 3891 1.453155 AACCTGGCTCTTATGCAACG 58.547 50.000 0.00 0.00 34.04 4.10
3461 3923 8.498054 TTCTGATGGTCTTGACTAATGATTTC 57.502 34.615 0.61 0.00 0.00 2.17
3480 3942 7.355017 TGATTTCGATCTTTATATTGCACTGC 58.645 34.615 0.00 0.00 0.00 4.40
3481 3943 5.673337 TTCGATCTTTATATTGCACTGCC 57.327 39.130 0.00 0.00 0.00 4.85
3503 3970 6.103330 GCCTGTAACAGTTTTTCAGGAAAAA 58.897 36.000 24.05 14.17 45.76 1.94
3521 3988 6.640907 AGGAAAAAGAAAATCAAATTCGTCGG 59.359 34.615 0.00 0.00 32.04 4.79
3549 4016 3.335579 GAGGCGTTCTGTTAGGTCAAAT 58.664 45.455 0.00 0.00 0.00 2.32
3550 4017 3.751518 AGGCGTTCTGTTAGGTCAAATT 58.248 40.909 0.00 0.00 0.00 1.82
3580 4047 0.592637 TGCAGCAATCTGGTTGTTCG 59.407 50.000 2.18 0.00 40.65 3.95
3581 4048 0.730494 GCAGCAATCTGGTTGTTCGC 60.730 55.000 2.18 0.00 40.65 4.70
3589 4056 1.879380 TCTGGTTGTTCGCATTTCTGG 59.121 47.619 0.00 0.00 0.00 3.86
3637 4111 5.551760 ACTTGTAAATATGTGCTGTCTGC 57.448 39.130 0.00 0.00 43.25 4.26
3642 4116 2.099141 ATATGTGCTGTCTGCGTGTT 57.901 45.000 0.00 0.00 46.63 3.32
3767 4242 0.241213 CGAACGTTCTCTGAGGAGCA 59.759 55.000 24.80 0.00 39.31 4.26
3774 4249 3.006247 GTTCTCTGAGGAGCATGGAAAC 58.994 50.000 4.59 0.00 39.31 2.78
3781 4258 5.036117 TGAGGAGCATGGAAACTATAACC 57.964 43.478 0.00 0.00 0.00 2.85
3805 4282 9.394767 ACCTTTTCATGGCAATTTATATTTTCC 57.605 29.630 0.00 0.00 0.00 3.13
3856 4334 3.687698 GCAAATCCGCCTAGTTCAGTTTA 59.312 43.478 0.00 0.00 0.00 2.01
3860 4338 4.546829 TCCGCCTAGTTCAGTTTATTGT 57.453 40.909 0.00 0.00 0.00 2.71
3917 4396 3.074412 CTCTCCCAGCACAATAACGTTT 58.926 45.455 5.91 0.00 0.00 3.60
3918 4397 3.071479 TCTCCCAGCACAATAACGTTTC 58.929 45.455 5.91 0.00 0.00 2.78
3922 4401 3.427503 CCCAGCACAATAACGTTTCCATC 60.428 47.826 5.91 0.00 0.00 3.51
3923 4402 3.190327 CCAGCACAATAACGTTTCCATCA 59.810 43.478 5.91 0.00 0.00 3.07
3924 4403 4.320861 CCAGCACAATAACGTTTCCATCAA 60.321 41.667 5.91 0.00 0.00 2.57
3925 4404 5.218885 CAGCACAATAACGTTTCCATCAAA 58.781 37.500 5.91 0.00 0.00 2.69
3926 4405 5.863397 CAGCACAATAACGTTTCCATCAAAT 59.137 36.000 5.91 0.00 0.00 2.32
3927 4406 6.365789 CAGCACAATAACGTTTCCATCAAATT 59.634 34.615 5.91 0.00 0.00 1.82
3928 4407 7.540400 CAGCACAATAACGTTTCCATCAAATTA 59.460 33.333 5.91 0.00 0.00 1.40
3929 4408 8.085296 AGCACAATAACGTTTCCATCAAATTAA 58.915 29.630 5.91 0.00 0.00 1.40
3930 4409 8.704234 GCACAATAACGTTTCCATCAAATTAAA 58.296 29.630 5.91 0.00 0.00 1.52
3932 4411 9.751542 ACAATAACGTTTCCATCAAATTAAACA 57.248 25.926 5.91 0.00 32.61 2.83
3935 4414 9.921637 ATAACGTTTCCATCAAATTAAACATGT 57.078 25.926 5.91 0.00 32.61 3.21
3936 4415 7.867445 ACGTTTCCATCAAATTAAACATGTC 57.133 32.000 0.00 0.00 32.61 3.06
3937 4416 7.429633 ACGTTTCCATCAAATTAAACATGTCA 58.570 30.769 0.00 0.00 32.61 3.58
3938 4417 8.087750 ACGTTTCCATCAAATTAAACATGTCAT 58.912 29.630 0.00 0.00 32.61 3.06
3939 4418 8.374728 CGTTTCCATCAAATTAAACATGTCATG 58.625 33.333 11.41 11.41 32.61 3.07
3940 4419 7.830940 TTCCATCAAATTAAACATGTCATGC 57.169 32.000 12.91 0.00 0.00 4.06
3941 4420 6.339730 TCCATCAAATTAAACATGTCATGCC 58.660 36.000 12.91 0.00 0.00 4.40
3942 4421 6.154877 TCCATCAAATTAAACATGTCATGCCT 59.845 34.615 12.91 2.81 0.00 4.75
3943 4422 6.819649 CCATCAAATTAAACATGTCATGCCTT 59.180 34.615 12.91 9.00 0.00 4.35
3944 4423 7.980662 CCATCAAATTAAACATGTCATGCCTTA 59.019 33.333 12.91 8.07 0.00 2.69
3985 4464 6.120905 GCATGCTGATCAGGAGGATATAATT 58.879 40.000 29.67 4.27 36.00 1.40
3986 4465 6.260493 GCATGCTGATCAGGAGGATATAATTC 59.740 42.308 29.67 7.93 36.00 2.17
3987 4466 6.305272 TGCTGATCAGGAGGATATAATTCC 57.695 41.667 23.89 2.83 36.00 3.01
3988 4467 5.190528 TGCTGATCAGGAGGATATAATTCCC 59.809 44.000 23.89 2.20 36.00 3.97
3989 4468 5.428131 GCTGATCAGGAGGATATAATTCCCT 59.572 44.000 23.89 0.00 36.00 4.20
3991 4470 7.502060 TGATCAGGAGGATATAATTCCCTTC 57.498 40.000 0.00 0.00 36.00 3.46
3992 4471 7.259391 TGATCAGGAGGATATAATTCCCTTCT 58.741 38.462 0.00 0.00 36.36 2.85
3995 4474 6.663953 TCAGGAGGATATAATTCCCTTCTACG 59.336 42.308 0.00 0.00 33.70 3.51
3996 4475 6.663953 CAGGAGGATATAATTCCCTTCTACGA 59.336 42.308 0.00 0.00 33.70 3.43
4009 4506 1.477553 TCTACGATACGGGGTGCTTT 58.522 50.000 0.00 0.00 0.00 3.51
4018 4515 3.434940 ACGGGGTGCTTTATCTTCTTT 57.565 42.857 0.00 0.00 0.00 2.52
4020 4517 4.913784 ACGGGGTGCTTTATCTTCTTTTA 58.086 39.130 0.00 0.00 0.00 1.52
4021 4518 5.318630 ACGGGGTGCTTTATCTTCTTTTAA 58.681 37.500 0.00 0.00 0.00 1.52
4025 4525 7.362574 CGGGGTGCTTTATCTTCTTTTAATTCA 60.363 37.037 0.00 0.00 0.00 2.57
4050 4550 2.438021 ACCTGTAACCTTCTGCTCACAA 59.562 45.455 0.00 0.00 0.00 3.33
4063 4563 6.313519 TCTGCTCACAATCCTATTTTAGGT 57.686 37.500 0.72 0.00 46.32 3.08
4069 4569 5.046159 TCACAATCCTATTTTAGGTGTCGGT 60.046 40.000 0.72 0.00 46.32 4.69
4070 4570 6.154877 TCACAATCCTATTTTAGGTGTCGGTA 59.845 38.462 0.72 0.00 46.32 4.02
4075 4575 8.896722 ATCCTATTTTAGGTGTCGGTATAGAT 57.103 34.615 0.72 0.00 46.32 1.98
4091 4591 7.236847 TCGGTATAGATGGGGAATAATTTGACT 59.763 37.037 0.00 0.00 0.00 3.41
4097 4597 3.146847 GGGGAATAATTTGACTAGGGCG 58.853 50.000 0.00 0.00 0.00 6.13
4104 4604 0.545787 TTTGACTAGGGCGGAGGGAA 60.546 55.000 0.00 0.00 0.00 3.97
4111 4611 3.930012 GGCGGAGGGAAGATCGGG 61.930 72.222 0.00 0.00 0.00 5.14
4127 4627 3.275617 TCGGGACAATATTTGACCAGG 57.724 47.619 10.14 0.00 45.42 4.45
4166 4666 2.035961 TGGTGATAGGATAAGACGCTGC 59.964 50.000 0.00 0.00 0.00 5.25
4210 4710 6.183360 ACGTACTGTCTGATAAGCTAGAACTG 60.183 42.308 0.00 0.00 0.00 3.16
4211 4711 5.004922 ACTGTCTGATAAGCTAGAACTGC 57.995 43.478 0.00 0.00 0.00 4.40
4212 4712 4.142049 ACTGTCTGATAAGCTAGAACTGCC 60.142 45.833 0.00 0.00 0.00 4.85
4237 4739 1.207791 AAGTCTGGGAATCCGATGCT 58.792 50.000 0.00 0.00 35.24 3.79
4240 4742 0.469917 TCTGGGAATCCGATGCTTCC 59.530 55.000 0.00 0.00 40.22 3.46
4243 4745 0.880718 GGGAATCCGATGCTTCCGTC 60.881 60.000 0.00 0.00 41.57 4.79
4257 4759 1.172180 TCCGTCGGTCCGTACTTTGT 61.172 55.000 11.88 0.00 0.00 2.83
4278 4780 5.845103 TGTCTATGTGTCCGAAAACTTGTA 58.155 37.500 0.00 0.00 0.00 2.41
4298 4800 1.205893 ACCATTTGTGGCACGTGTTTT 59.794 42.857 18.38 0.00 0.00 2.43
4349 4851 4.022849 CAGTAGAAAAGGAGCCCAAAACAG 60.023 45.833 0.00 0.00 0.00 3.16
4350 4852 1.688735 AGAAAAGGAGCCCAAAACAGC 59.311 47.619 0.00 0.00 0.00 4.40
4357 4859 1.008538 GCCCAAAACAGCTCACACG 60.009 57.895 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.964223 GGAAGACCTATCATCGCCTCA 59.036 52.381 0.00 0.00 0.00 3.86
1 2 1.964223 TGGAAGACCTATCATCGCCTC 59.036 52.381 0.00 0.00 37.04 4.70
2 3 2.088104 TGGAAGACCTATCATCGCCT 57.912 50.000 0.00 0.00 37.04 5.52
5 6 6.974932 CCATATTTGGAAGACCTATCATCG 57.025 41.667 0.00 0.00 46.92 3.84
27 28 9.425577 GCTTAGGTATAGAAGATTACAACATCC 57.574 37.037 0.00 0.00 0.00 3.51
28 29 9.982651 TGCTTAGGTATAGAAGATTACAACATC 57.017 33.333 0.00 0.00 0.00 3.06
29 30 9.988815 CTGCTTAGGTATAGAAGATTACAACAT 57.011 33.333 0.00 0.00 0.00 2.71
30 31 7.926555 GCTGCTTAGGTATAGAAGATTACAACA 59.073 37.037 0.00 0.00 0.00 3.33
31 32 8.145122 AGCTGCTTAGGTATAGAAGATTACAAC 58.855 37.037 0.00 0.00 0.00 3.32
32 33 8.251383 AGCTGCTTAGGTATAGAAGATTACAA 57.749 34.615 0.00 0.00 0.00 2.41
33 34 7.841282 AGCTGCTTAGGTATAGAAGATTACA 57.159 36.000 0.00 0.00 0.00 2.41
34 35 7.971722 GCTAGCTGCTTAGGTATAGAAGATTAC 59.028 40.741 7.79 0.00 38.95 1.89
35 36 7.122948 GGCTAGCTGCTTAGGTATAGAAGATTA 59.877 40.741 15.72 0.00 42.39 1.75
36 37 6.071051 GGCTAGCTGCTTAGGTATAGAAGATT 60.071 42.308 15.72 0.00 42.39 2.40
37 38 5.420739 GGCTAGCTGCTTAGGTATAGAAGAT 59.579 44.000 15.72 0.00 42.39 2.40
38 39 4.767928 GGCTAGCTGCTTAGGTATAGAAGA 59.232 45.833 15.72 0.00 42.39 2.87
39 40 4.081917 GGGCTAGCTGCTTAGGTATAGAAG 60.082 50.000 15.72 0.00 42.39 2.85
40 41 3.833070 GGGCTAGCTGCTTAGGTATAGAA 59.167 47.826 15.72 0.00 42.39 2.10
41 42 3.432378 GGGCTAGCTGCTTAGGTATAGA 58.568 50.000 15.72 0.00 42.39 1.98
42 43 2.498078 GGGGCTAGCTGCTTAGGTATAG 59.502 54.545 15.72 0.00 42.39 1.31
43 44 2.111972 AGGGGCTAGCTGCTTAGGTATA 59.888 50.000 15.72 0.00 42.39 1.47
44 45 1.132689 AGGGGCTAGCTGCTTAGGTAT 60.133 52.381 15.72 0.00 42.39 2.73
45 46 0.264955 AGGGGCTAGCTGCTTAGGTA 59.735 55.000 15.72 0.00 42.39 3.08
46 47 0.264955 TAGGGGCTAGCTGCTTAGGT 59.735 55.000 15.72 0.00 42.39 3.08
47 48 1.650528 ATAGGGGCTAGCTGCTTAGG 58.349 55.000 15.72 0.00 42.39 2.69
48 49 4.714308 AGATAATAGGGGCTAGCTGCTTAG 59.286 45.833 15.72 4.66 42.39 2.18
49 50 4.689062 AGATAATAGGGGCTAGCTGCTTA 58.311 43.478 15.72 6.48 42.39 3.09
50 51 3.525862 AGATAATAGGGGCTAGCTGCTT 58.474 45.455 15.72 4.47 42.39 3.91
51 52 3.197927 AGATAATAGGGGCTAGCTGCT 57.802 47.619 15.72 7.57 42.39 4.24
52 53 3.990959 AAGATAATAGGGGCTAGCTGC 57.009 47.619 15.72 0.00 41.94 5.25
53 54 7.856415 AGAAATAAGATAATAGGGGCTAGCTG 58.144 38.462 15.72 0.00 0.00 4.24
54 55 7.904022 AGAGAAATAAGATAATAGGGGCTAGCT 59.096 37.037 15.72 0.00 0.00 3.32
55 56 8.084985 AGAGAAATAAGATAATAGGGGCTAGC 57.915 38.462 6.04 6.04 0.00 3.42
69 70 9.577110 CATGCTTGCATTTTAAGAGAAATAAGA 57.423 29.630 5.24 0.00 0.00 2.10
70 71 9.362539 ACATGCTTGCATTTTAAGAGAAATAAG 57.637 29.630 5.24 0.00 0.00 1.73
71 72 9.357652 GACATGCTTGCATTTTAAGAGAAATAA 57.642 29.630 5.24 0.00 0.00 1.40
72 73 8.522003 TGACATGCTTGCATTTTAAGAGAAATA 58.478 29.630 5.24 0.00 0.00 1.40
73 74 7.380536 TGACATGCTTGCATTTTAAGAGAAAT 58.619 30.769 5.24 0.00 0.00 2.17
74 75 6.747125 TGACATGCTTGCATTTTAAGAGAAA 58.253 32.000 5.24 0.00 0.00 2.52
75 76 6.330004 TGACATGCTTGCATTTTAAGAGAA 57.670 33.333 5.24 0.00 0.00 2.87
76 77 5.963176 TGACATGCTTGCATTTTAAGAGA 57.037 34.783 5.24 0.00 0.00 3.10
77 78 6.561614 AGATGACATGCTTGCATTTTAAGAG 58.438 36.000 5.24 0.00 0.00 2.85
78 79 6.405065 GGAGATGACATGCTTGCATTTTAAGA 60.405 38.462 5.24 0.00 0.00 2.10
79 80 5.747197 GGAGATGACATGCTTGCATTTTAAG 59.253 40.000 5.24 0.00 0.00 1.85
80 81 5.419788 AGGAGATGACATGCTTGCATTTTAA 59.580 36.000 5.24 0.00 0.00 1.52
81 82 4.951715 AGGAGATGACATGCTTGCATTTTA 59.048 37.500 5.24 0.00 0.00 1.52
82 83 3.767673 AGGAGATGACATGCTTGCATTTT 59.232 39.130 5.24 0.00 0.00 1.82
83 84 3.130516 CAGGAGATGACATGCTTGCATTT 59.869 43.478 5.24 0.00 0.00 2.32
84 85 2.688446 CAGGAGATGACATGCTTGCATT 59.312 45.455 5.24 0.00 0.00 3.56
85 86 2.298610 CAGGAGATGACATGCTTGCAT 58.701 47.619 1.81 1.81 0.00 3.96
86 87 1.746470 CAGGAGATGACATGCTTGCA 58.254 50.000 0.00 0.00 0.00 4.08
87 88 0.381089 GCAGGAGATGACATGCTTGC 59.619 55.000 0.00 0.00 42.93 4.01
88 89 1.746470 TGCAGGAGATGACATGCTTG 58.254 50.000 0.00 0.00 45.76 4.01
89 90 2.089980 GTTGCAGGAGATGACATGCTT 58.910 47.619 0.00 0.00 45.76 3.91
90 91 1.281287 AGTTGCAGGAGATGACATGCT 59.719 47.619 0.00 0.00 45.76 3.79
91 92 1.747709 AGTTGCAGGAGATGACATGC 58.252 50.000 0.00 0.00 45.77 4.06
92 93 2.159421 GCAAGTTGCAGGAGATGACATG 60.159 50.000 22.90 0.00 44.26 3.21
93 94 2.089980 GCAAGTTGCAGGAGATGACAT 58.910 47.619 22.90 0.00 44.26 3.06
94 95 1.527034 GCAAGTTGCAGGAGATGACA 58.473 50.000 22.90 0.00 44.26 3.58
105 106 2.068519 GGCTTTTACCATGCAAGTTGC 58.931 47.619 21.17 21.17 45.29 4.17
106 107 2.036992 TGGGCTTTTACCATGCAAGTTG 59.963 45.455 0.00 0.00 31.83 3.16
107 108 2.037121 GTGGGCTTTTACCATGCAAGTT 59.963 45.455 0.00 0.00 40.70 2.66
108 109 1.618343 GTGGGCTTTTACCATGCAAGT 59.382 47.619 0.00 0.00 40.70 3.16
109 110 1.066929 GGTGGGCTTTTACCATGCAAG 60.067 52.381 0.00 0.00 40.70 4.01
110 111 0.972883 GGTGGGCTTTTACCATGCAA 59.027 50.000 0.00 0.00 40.70 4.08
111 112 1.247419 CGGTGGGCTTTTACCATGCA 61.247 55.000 0.00 0.00 40.70 3.96
112 113 1.510844 CGGTGGGCTTTTACCATGC 59.489 57.895 0.00 0.00 40.70 4.06
113 114 1.247419 TGCGGTGGGCTTTTACCATG 61.247 55.000 0.00 0.00 44.05 3.66
114 115 0.540830 TTGCGGTGGGCTTTTACCAT 60.541 50.000 0.00 0.00 44.05 3.55
115 116 1.152735 TTGCGGTGGGCTTTTACCA 60.153 52.632 0.00 0.00 44.05 3.25
116 117 1.287815 GTTGCGGTGGGCTTTTACC 59.712 57.895 0.00 0.00 44.05 2.85
117 118 0.601057 ATGTTGCGGTGGGCTTTTAC 59.399 50.000 0.00 0.00 44.05 2.01
118 119 0.600557 CATGTTGCGGTGGGCTTTTA 59.399 50.000 0.00 0.00 44.05 1.52
119 120 1.367102 CATGTTGCGGTGGGCTTTT 59.633 52.632 0.00 0.00 44.05 2.27
120 121 0.538516 TACATGTTGCGGTGGGCTTT 60.539 50.000 2.30 0.00 44.05 3.51
121 122 0.538516 TTACATGTTGCGGTGGGCTT 60.539 50.000 2.30 0.00 44.05 4.35
122 123 1.074072 TTACATGTTGCGGTGGGCT 59.926 52.632 2.30 0.00 44.05 5.19
123 124 1.211709 GTTACATGTTGCGGTGGGC 59.788 57.895 2.30 0.00 43.96 5.36
124 125 0.891449 TGGTTACATGTTGCGGTGGG 60.891 55.000 2.30 0.00 0.00 4.61
125 126 1.173043 ATGGTTACATGTTGCGGTGG 58.827 50.000 2.30 0.00 35.57 4.61
135 136 5.300286 GGCTTTCTTCTATGCATGGTTACAT 59.700 40.000 10.16 0.00 37.99 2.29
136 137 4.640201 GGCTTTCTTCTATGCATGGTTACA 59.360 41.667 10.16 0.00 0.00 2.41
137 138 4.640201 TGGCTTTCTTCTATGCATGGTTAC 59.360 41.667 10.16 0.00 0.00 2.50
138 139 4.640201 GTGGCTTTCTTCTATGCATGGTTA 59.360 41.667 10.16 0.00 0.00 2.85
139 140 3.445096 GTGGCTTTCTTCTATGCATGGTT 59.555 43.478 10.16 0.00 0.00 3.67
140 141 3.019564 GTGGCTTTCTTCTATGCATGGT 58.980 45.455 10.16 0.00 0.00 3.55
141 142 2.360165 GGTGGCTTTCTTCTATGCATGG 59.640 50.000 10.16 6.58 0.00 3.66
142 143 3.285484 AGGTGGCTTTCTTCTATGCATG 58.715 45.455 10.16 0.00 0.00 4.06
143 144 3.659183 AGGTGGCTTTCTTCTATGCAT 57.341 42.857 3.79 3.79 0.00 3.96
144 145 3.439857 AAGGTGGCTTTCTTCTATGCA 57.560 42.857 0.00 0.00 0.00 3.96
145 146 4.700213 TGTTAAGGTGGCTTTCTTCTATGC 59.300 41.667 0.00 0.00 0.00 3.14
146 147 6.678900 GCATGTTAAGGTGGCTTTCTTCTATG 60.679 42.308 0.00 0.00 0.00 2.23
147 148 5.358160 GCATGTTAAGGTGGCTTTCTTCTAT 59.642 40.000 0.00 0.00 0.00 1.98
148 149 4.700213 GCATGTTAAGGTGGCTTTCTTCTA 59.300 41.667 0.00 0.00 0.00 2.10
149 150 3.507622 GCATGTTAAGGTGGCTTTCTTCT 59.492 43.478 0.00 0.00 0.00 2.85
150 151 3.255642 TGCATGTTAAGGTGGCTTTCTTC 59.744 43.478 0.00 0.00 0.00 2.87
151 152 3.230134 TGCATGTTAAGGTGGCTTTCTT 58.770 40.909 0.00 0.00 0.00 2.52
152 153 2.875296 TGCATGTTAAGGTGGCTTTCT 58.125 42.857 0.00 0.00 0.00 2.52
153 154 3.193267 TCATGCATGTTAAGGTGGCTTTC 59.807 43.478 25.43 0.00 0.00 2.62
154 155 3.164268 TCATGCATGTTAAGGTGGCTTT 58.836 40.909 25.43 0.00 0.00 3.51
155 156 2.756760 CTCATGCATGTTAAGGTGGCTT 59.243 45.455 25.43 0.00 0.00 4.35
156 157 2.025981 TCTCATGCATGTTAAGGTGGCT 60.026 45.455 25.43 0.00 0.00 4.75
157 158 2.368439 TCTCATGCATGTTAAGGTGGC 58.632 47.619 25.43 0.00 0.00 5.01
158 159 5.587388 AATTCTCATGCATGTTAAGGTGG 57.413 39.130 25.43 7.67 0.00 4.61
159 160 7.537715 TGTAAATTCTCATGCATGTTAAGGTG 58.462 34.615 25.43 0.00 0.00 4.00
160 161 7.701539 TGTAAATTCTCATGCATGTTAAGGT 57.298 32.000 25.43 14.09 0.00 3.50
161 162 9.241317 GAATGTAAATTCTCATGCATGTTAAGG 57.759 33.333 25.43 11.95 0.00 2.69
214 215 9.988815 TGCTTAATTGTTGTATGGTTGTAAAAT 57.011 25.926 0.00 0.00 0.00 1.82
215 216 9.250624 GTGCTTAATTGTTGTATGGTTGTAAAA 57.749 29.630 0.00 0.00 0.00 1.52
216 217 8.414003 TGTGCTTAATTGTTGTATGGTTGTAAA 58.586 29.630 0.00 0.00 0.00 2.01
217 218 7.941919 TGTGCTTAATTGTTGTATGGTTGTAA 58.058 30.769 0.00 0.00 0.00 2.41
218 219 7.511959 TGTGCTTAATTGTTGTATGGTTGTA 57.488 32.000 0.00 0.00 0.00 2.41
219 220 6.398234 TGTGCTTAATTGTTGTATGGTTGT 57.602 33.333 0.00 0.00 0.00 3.32
220 221 7.887996 ATTGTGCTTAATTGTTGTATGGTTG 57.112 32.000 0.00 0.00 0.00 3.77
221 222 9.988815 TTTATTGTGCTTAATTGTTGTATGGTT 57.011 25.926 0.00 0.00 0.00 3.67
226 227 9.352784 GCAGATTTATTGTGCTTAATTGTTGTA 57.647 29.630 0.00 0.00 34.23 2.41
227 228 7.871973 TGCAGATTTATTGTGCTTAATTGTTGT 59.128 29.630 0.00 0.00 38.09 3.32
228 229 8.242085 TGCAGATTTATTGTGCTTAATTGTTG 57.758 30.769 0.00 0.00 38.09 3.33
229 230 9.439500 AATGCAGATTTATTGTGCTTAATTGTT 57.561 25.926 0.00 0.00 38.09 2.83
230 231 9.439500 AAATGCAGATTTATTGTGCTTAATTGT 57.561 25.926 0.00 0.00 38.09 2.71
236 237 9.492973 AACTAAAAATGCAGATTTATTGTGCTT 57.507 25.926 7.05 0.00 38.09 3.91
237 238 9.143631 GAACTAAAAATGCAGATTTATTGTGCT 57.856 29.630 7.05 0.00 38.09 4.40
238 239 9.143631 AGAACTAAAAATGCAGATTTATTGTGC 57.856 29.630 7.05 3.12 37.73 4.57
246 247 9.507329 TGAGAAGTAGAACTAAAAATGCAGATT 57.493 29.630 0.00 0.00 0.00 2.40
247 248 9.678260 ATGAGAAGTAGAACTAAAAATGCAGAT 57.322 29.630 0.00 0.00 0.00 2.90
338 339 2.619177 TGATACCCCACACGTTTTTGTG 59.381 45.455 0.00 0.00 45.57 3.33
339 340 2.933573 TGATACCCCACACGTTTTTGT 58.066 42.857 0.00 0.00 0.00 2.83
340 341 5.828299 ATATGATACCCCACACGTTTTTG 57.172 39.130 0.00 0.00 0.00 2.44
341 342 6.655930 ACTATATGATACCCCACACGTTTTT 58.344 36.000 0.00 0.00 0.00 1.94
342 343 6.243216 ACTATATGATACCCCACACGTTTT 57.757 37.500 0.00 0.00 0.00 2.43
343 344 5.881923 ACTATATGATACCCCACACGTTT 57.118 39.130 0.00 0.00 0.00 3.60
344 345 5.881923 AACTATATGATACCCCACACGTT 57.118 39.130 0.00 0.00 0.00 3.99
345 346 5.881923 AAACTATATGATACCCCACACGT 57.118 39.130 0.00 0.00 0.00 4.49
346 347 8.842358 ATTAAAACTATATGATACCCCACACG 57.158 34.615 0.00 0.00 0.00 4.49
377 378 0.541863 ACAGTTAATGAGGGCCGGAG 59.458 55.000 5.05 0.00 0.00 4.63
378 379 0.539986 GACAGTTAATGAGGGCCGGA 59.460 55.000 5.05 0.00 0.00 5.14
379 380 0.810031 CGACAGTTAATGAGGGCCGG 60.810 60.000 0.00 0.00 0.00 6.13
380 381 1.429148 GCGACAGTTAATGAGGGCCG 61.429 60.000 0.00 0.00 0.00 6.13
381 382 1.429148 CGCGACAGTTAATGAGGGCC 61.429 60.000 0.00 0.00 0.00 5.80
382 383 1.429148 CCGCGACAGTTAATGAGGGC 61.429 60.000 8.23 0.00 0.00 5.19
383 384 1.429148 GCCGCGACAGTTAATGAGGG 61.429 60.000 8.23 0.00 0.00 4.30
384 385 1.429148 GGCCGCGACAGTTAATGAGG 61.429 60.000 8.23 0.00 0.00 3.86
385 386 0.460284 AGGCCGCGACAGTTAATGAG 60.460 55.000 8.23 0.00 0.00 2.90
386 387 0.818938 TAGGCCGCGACAGTTAATGA 59.181 50.000 8.23 0.00 0.00 2.57
387 388 1.865865 ATAGGCCGCGACAGTTAATG 58.134 50.000 8.23 0.00 0.00 1.90
388 389 3.738830 TTATAGGCCGCGACAGTTAAT 57.261 42.857 8.23 0.00 0.00 1.40
389 390 3.523606 TTTATAGGCCGCGACAGTTAA 57.476 42.857 8.23 0.00 0.00 2.01
390 391 3.523606 TTTTATAGGCCGCGACAGTTA 57.476 42.857 8.23 0.00 0.00 2.24
391 392 2.389962 TTTTATAGGCCGCGACAGTT 57.610 45.000 8.23 0.00 0.00 3.16
392 393 2.389962 TTTTTATAGGCCGCGACAGT 57.610 45.000 8.23 0.00 0.00 3.55
415 416 2.422479 CTCATTCACATGCCAAGGAGTG 59.578 50.000 9.63 0.00 0.00 3.51
416 417 2.719739 CTCATTCACATGCCAAGGAGT 58.280 47.619 9.63 0.00 0.00 3.85
417 418 1.404391 GCTCATTCACATGCCAAGGAG 59.596 52.381 12.37 12.37 34.29 3.69
418 419 1.466856 GCTCATTCACATGCCAAGGA 58.533 50.000 0.00 0.00 0.00 3.36
419 420 0.458669 GGCTCATTCACATGCCAAGG 59.541 55.000 0.00 0.00 44.34 3.61
420 421 0.099968 CGGCTCATTCACATGCCAAG 59.900 55.000 0.00 0.00 45.13 3.61
421 422 0.608856 ACGGCTCATTCACATGCCAA 60.609 50.000 0.00 0.00 45.13 4.52
422 423 1.002257 ACGGCTCATTCACATGCCA 60.002 52.632 0.00 0.00 45.13 4.92
423 424 1.308069 ACACGGCTCATTCACATGCC 61.308 55.000 0.00 0.00 41.76 4.40
424 425 0.097674 GACACGGCTCATTCACATGC 59.902 55.000 0.00 0.00 0.00 4.06
425 426 1.441738 TGACACGGCTCATTCACATG 58.558 50.000 0.00 0.00 0.00 3.21
426 427 2.183478 TTGACACGGCTCATTCACAT 57.817 45.000 0.00 0.00 0.00 3.21
427 428 2.183478 ATTGACACGGCTCATTCACA 57.817 45.000 0.00 0.00 0.00 3.58
428 429 2.483877 TCAATTGACACGGCTCATTCAC 59.516 45.455 3.38 0.00 0.00 3.18
429 430 2.777094 TCAATTGACACGGCTCATTCA 58.223 42.857 3.38 0.00 0.00 2.57
430 431 3.829886 TTCAATTGACACGGCTCATTC 57.170 42.857 7.89 0.00 0.00 2.67
431 432 3.119388 CCATTCAATTGACACGGCTCATT 60.119 43.478 7.89 0.00 0.00 2.57
432 433 2.424601 CCATTCAATTGACACGGCTCAT 59.575 45.455 7.89 0.00 0.00 2.90
433 434 1.811965 CCATTCAATTGACACGGCTCA 59.188 47.619 7.89 0.00 0.00 4.26
434 435 1.133025 CCCATTCAATTGACACGGCTC 59.867 52.381 7.89 0.00 0.00 4.70
435 436 1.176527 CCCATTCAATTGACACGGCT 58.823 50.000 7.89 0.00 0.00 5.52
436 437 0.173255 CCCCATTCAATTGACACGGC 59.827 55.000 7.89 0.00 0.00 5.68
437 438 0.173255 GCCCCATTCAATTGACACGG 59.827 55.000 7.89 8.69 0.00 4.94
438 439 0.179166 CGCCCCATTCAATTGACACG 60.179 55.000 7.89 2.39 0.00 4.49
439 440 0.173255 CCGCCCCATTCAATTGACAC 59.827 55.000 7.89 0.00 0.00 3.67
440 441 0.038890 TCCGCCCCATTCAATTGACA 59.961 50.000 7.89 0.11 0.00 3.58
441 442 0.740737 CTCCGCCCCATTCAATTGAC 59.259 55.000 7.89 0.00 0.00 3.18
442 443 0.395586 CCTCCGCCCCATTCAATTGA 60.396 55.000 3.38 3.38 0.00 2.57
443 444 1.394266 CCCTCCGCCCCATTCAATTG 61.394 60.000 0.00 0.00 0.00 2.32
444 445 1.076044 CCCTCCGCCCCATTCAATT 60.076 57.895 0.00 0.00 0.00 2.32
445 446 1.999634 CTCCCTCCGCCCCATTCAAT 62.000 60.000 0.00 0.00 0.00 2.57
446 447 2.612430 TCCCTCCGCCCCATTCAA 60.612 61.111 0.00 0.00 0.00 2.69
447 448 2.539277 TACTCCCTCCGCCCCATTCA 62.539 60.000 0.00 0.00 0.00 2.57
448 449 1.759459 CTACTCCCTCCGCCCCATTC 61.759 65.000 0.00 0.00 0.00 2.67
449 450 1.766461 CTACTCCCTCCGCCCCATT 60.766 63.158 0.00 0.00 0.00 3.16
450 451 2.037304 ATCTACTCCCTCCGCCCCAT 62.037 60.000 0.00 0.00 0.00 4.00
451 452 1.365894 TATCTACTCCCTCCGCCCCA 61.366 60.000 0.00 0.00 0.00 4.96
452 453 0.612453 CTATCTACTCCCTCCGCCCC 60.612 65.000 0.00 0.00 0.00 5.80
453 454 0.404812 TCTATCTACTCCCTCCGCCC 59.595 60.000 0.00 0.00 0.00 6.13
454 455 1.074244 AGTCTATCTACTCCCTCCGCC 59.926 57.143 0.00 0.00 0.00 6.13
455 456 2.572209 AGTCTATCTACTCCCTCCGC 57.428 55.000 0.00 0.00 0.00 5.54
456 457 3.822167 GGAAAGTCTATCTACTCCCTCCG 59.178 52.174 0.00 0.00 0.00 4.63
457 458 3.822167 CGGAAAGTCTATCTACTCCCTCC 59.178 52.174 0.00 0.00 0.00 4.30
458 459 4.463070 ACGGAAAGTCTATCTACTCCCTC 58.537 47.826 0.00 0.00 0.00 4.30
459 460 4.523168 ACGGAAAGTCTATCTACTCCCT 57.477 45.455 0.00 0.00 0.00 4.20
460 461 6.705863 TTTACGGAAAGTCTATCTACTCCC 57.294 41.667 0.00 0.00 0.00 4.30
461 462 9.247126 GATTTTTACGGAAAGTCTATCTACTCC 57.753 37.037 0.00 0.00 32.82 3.85
462 463 9.247126 GGATTTTTACGGAAAGTCTATCTACTC 57.753 37.037 0.00 0.00 35.13 2.59
463 464 8.755977 TGGATTTTTACGGAAAGTCTATCTACT 58.244 33.333 0.00 0.00 35.13 2.57
464 465 8.937634 TGGATTTTTACGGAAAGTCTATCTAC 57.062 34.615 0.00 0.00 35.13 2.59
465 466 9.947433 TTTGGATTTTTACGGAAAGTCTATCTA 57.053 29.630 0.00 0.00 35.13 1.98
466 467 8.857694 TTTGGATTTTTACGGAAAGTCTATCT 57.142 30.769 0.00 0.00 35.13 1.98
467 468 8.727910 ACTTTGGATTTTTACGGAAAGTCTATC 58.272 33.333 0.00 0.00 35.13 2.08
468 469 8.631480 ACTTTGGATTTTTACGGAAAGTCTAT 57.369 30.769 0.00 0.00 35.13 1.98
469 470 8.454570 AACTTTGGATTTTTACGGAAAGTCTA 57.545 30.769 0.00 0.00 35.13 2.59
470 471 6.954487 ACTTTGGATTTTTACGGAAAGTCT 57.046 33.333 0.00 0.00 35.13 3.24
471 472 7.997107 AAACTTTGGATTTTTACGGAAAGTC 57.003 32.000 0.00 0.00 33.60 3.01
472 473 8.255206 AGAAAACTTTGGATTTTTACGGAAAGT 58.745 29.630 0.00 0.00 35.65 2.66
473 474 8.642908 AGAAAACTTTGGATTTTTACGGAAAG 57.357 30.769 0.00 0.00 29.44 2.62
484 485 8.803235 GGTGGAGTATTAAGAAAACTTTGGATT 58.197 33.333 0.00 0.00 0.00 3.01
485 486 7.396339 GGGTGGAGTATTAAGAAAACTTTGGAT 59.604 37.037 0.00 0.00 0.00 3.41
486 487 6.717997 GGGTGGAGTATTAAGAAAACTTTGGA 59.282 38.462 0.00 0.00 0.00 3.53
487 488 6.492087 TGGGTGGAGTATTAAGAAAACTTTGG 59.508 38.462 0.00 0.00 0.00 3.28
488 489 7.519032 TGGGTGGAGTATTAAGAAAACTTTG 57.481 36.000 0.00 0.00 0.00 2.77
489 490 8.541899 TTTGGGTGGAGTATTAAGAAAACTTT 57.458 30.769 0.00 0.00 0.00 2.66
490 491 7.232737 CCTTTGGGTGGAGTATTAAGAAAACTT 59.767 37.037 0.00 0.00 0.00 2.66
491 492 6.719829 CCTTTGGGTGGAGTATTAAGAAAACT 59.280 38.462 0.00 0.00 0.00 2.66
492 493 6.071560 CCCTTTGGGTGGAGTATTAAGAAAAC 60.072 42.308 0.00 0.00 38.25 2.43
493 494 6.014012 CCCTTTGGGTGGAGTATTAAGAAAA 58.986 40.000 0.00 0.00 38.25 2.29
494 495 5.313772 TCCCTTTGGGTGGAGTATTAAGAAA 59.686 40.000 2.25 0.00 44.74 2.52
495 496 4.853276 TCCCTTTGGGTGGAGTATTAAGAA 59.147 41.667 2.25 0.00 44.74 2.52
496 497 4.440808 TCCCTTTGGGTGGAGTATTAAGA 58.559 43.478 2.25 0.00 44.74 2.10
497 498 4.855298 TCCCTTTGGGTGGAGTATTAAG 57.145 45.455 2.25 0.00 44.74 1.85
498 499 5.806955 AATCCCTTTGGGTGGAGTATTAA 57.193 39.130 2.25 0.00 44.74 1.40
499 500 5.806955 AAATCCCTTTGGGTGGAGTATTA 57.193 39.130 2.25 0.00 44.74 0.98
500 501 4.692523 AAATCCCTTTGGGTGGAGTATT 57.307 40.909 2.25 0.00 44.74 1.89
501 502 4.692523 AAAATCCCTTTGGGTGGAGTAT 57.307 40.909 2.25 0.00 44.74 2.12
502 503 4.156477 CAAAAATCCCTTTGGGTGGAGTA 58.844 43.478 2.25 0.00 44.74 2.59
503 504 2.972021 CAAAAATCCCTTTGGGTGGAGT 59.028 45.455 2.25 0.00 44.74 3.85
504 505 2.972021 ACAAAAATCCCTTTGGGTGGAG 59.028 45.455 2.25 0.00 44.74 3.86
505 506 3.053359 ACAAAAATCCCTTTGGGTGGA 57.947 42.857 2.25 0.00 44.74 4.02
506 507 3.855255 AACAAAAATCCCTTTGGGTGG 57.145 42.857 2.25 0.00 44.74 4.61
507 508 7.719193 AGAAATTAACAAAAATCCCTTTGGGTG 59.281 33.333 2.25 0.00 44.74 4.61
508 509 7.811282 AGAAATTAACAAAAATCCCTTTGGGT 58.189 30.769 2.25 0.00 44.74 4.51
509 510 8.690203 AAGAAATTAACAAAAATCCCTTTGGG 57.310 30.769 0.00 0.00 46.11 4.12
589 590 9.457436 GGGTTGTAGGATATCTGTTTCTAAAAA 57.543 33.333 2.05 0.00 0.00 1.94
590 591 8.607713 TGGGTTGTAGGATATCTGTTTCTAAAA 58.392 33.333 2.05 0.00 0.00 1.52
591 592 8.153221 TGGGTTGTAGGATATCTGTTTCTAAA 57.847 34.615 2.05 0.00 0.00 1.85
592 593 7.743116 TGGGTTGTAGGATATCTGTTTCTAA 57.257 36.000 2.05 0.00 0.00 2.10
593 594 7.743116 TTGGGTTGTAGGATATCTGTTTCTA 57.257 36.000 2.05 0.00 0.00 2.10
594 595 6.636454 TTGGGTTGTAGGATATCTGTTTCT 57.364 37.500 2.05 0.00 0.00 2.52
595 596 7.661847 CCTATTGGGTTGTAGGATATCTGTTTC 59.338 40.741 2.05 0.00 39.91 2.78
596 597 7.518188 CCTATTGGGTTGTAGGATATCTGTTT 58.482 38.462 2.05 0.00 39.91 2.83
597 598 7.079451 CCTATTGGGTTGTAGGATATCTGTT 57.921 40.000 2.05 0.00 39.91 3.16
598 599 6.688073 CCTATTGGGTTGTAGGATATCTGT 57.312 41.667 2.05 0.00 39.91 3.41
614 615 4.222588 TCTCAAAACAAATGGCCCTATTGG 59.777 41.667 14.48 3.42 37.09 3.16
615 616 5.404466 TCTCAAAACAAATGGCCCTATTG 57.596 39.130 0.00 5.43 0.00 1.90
616 617 6.625532 ATTCTCAAAACAAATGGCCCTATT 57.374 33.333 0.00 0.00 0.00 1.73
617 618 6.667414 TGTATTCTCAAAACAAATGGCCCTAT 59.333 34.615 0.00 0.00 0.00 2.57
618 619 6.013379 TGTATTCTCAAAACAAATGGCCCTA 58.987 36.000 0.00 0.00 0.00 3.53
619 620 4.837860 TGTATTCTCAAAACAAATGGCCCT 59.162 37.500 0.00 0.00 0.00 5.19
620 621 5.146010 TGTATTCTCAAAACAAATGGCCC 57.854 39.130 0.00 0.00 0.00 5.80
621 622 5.408299 GGTTGTATTCTCAAAACAAATGGCC 59.592 40.000 0.00 0.00 35.08 5.36
622 623 5.408299 GGGTTGTATTCTCAAAACAAATGGC 59.592 40.000 0.00 0.00 35.08 4.40
623 624 6.520272 TGGGTTGTATTCTCAAAACAAATGG 58.480 36.000 0.00 0.00 35.08 3.16
624 625 8.606040 ATTGGGTTGTATTCTCAAAACAAATG 57.394 30.769 0.00 0.00 35.08 2.32
625 626 9.927668 CTATTGGGTTGTATTCTCAAAACAAAT 57.072 29.630 0.00 0.00 35.08 2.32
626 627 8.364142 CCTATTGGGTTGTATTCTCAAAACAAA 58.636 33.333 0.00 0.00 35.08 2.83
627 628 7.891561 CCTATTGGGTTGTATTCTCAAAACAA 58.108 34.615 0.00 0.00 33.34 2.83
628 629 7.461182 CCTATTGGGTTGTATTCTCAAAACA 57.539 36.000 0.00 0.00 0.00 2.83
654 655 2.302199 GACCGTAAAGTAGCCCGGGG 62.302 65.000 25.28 9.31 44.57 5.73
655 656 1.142531 GACCGTAAAGTAGCCCGGG 59.857 63.158 19.09 19.09 44.57 5.73
656 657 1.142531 GGACCGTAAAGTAGCCCGG 59.857 63.158 0.00 0.00 45.72 5.73
657 658 0.459063 GTGGACCGTAAAGTAGCCCG 60.459 60.000 0.00 0.00 0.00 6.13
658 659 0.107993 GGTGGACCGTAAAGTAGCCC 60.108 60.000 0.00 0.00 0.00 5.19
659 660 0.609662 TGGTGGACCGTAAAGTAGCC 59.390 55.000 0.00 0.00 39.43 3.93
660 661 2.460757 TTGGTGGACCGTAAAGTAGC 57.539 50.000 0.00 0.00 39.43 3.58
661 662 5.952526 AAATTTGGTGGACCGTAAAGTAG 57.047 39.130 0.00 0.00 39.43 2.57
683 684 6.821160 GGTTCCATTCTTTGAACTTGGAAAAA 59.179 34.615 13.61 0.00 45.34 1.94
684 685 6.156083 AGGTTCCATTCTTTGAACTTGGAAAA 59.844 34.615 13.61 0.00 45.34 2.29
685 686 5.660864 AGGTTCCATTCTTTGAACTTGGAAA 59.339 36.000 13.61 1.47 45.34 3.13
686 687 5.068987 CAGGTTCCATTCTTTGAACTTGGAA 59.931 40.000 9.85 9.85 41.92 3.53
687 688 4.584325 CAGGTTCCATTCTTTGAACTTGGA 59.416 41.667 6.60 0.14 41.92 3.53
691 692 2.554032 CGCAGGTTCCATTCTTTGAACT 59.446 45.455 0.00 0.00 40.50 3.01
692 693 2.293399 ACGCAGGTTCCATTCTTTGAAC 59.707 45.455 0.00 0.00 40.06 3.18
710 714 2.048127 GGGATCGGATGGCTACGC 60.048 66.667 0.00 0.00 0.00 4.42
712 716 2.224523 TGAATTGGGATCGGATGGCTAC 60.225 50.000 0.00 0.00 0.00 3.58
736 740 5.052693 TGGCAGCTAATCCATATCTGTTT 57.947 39.130 0.00 0.00 31.70 2.83
803 807 3.428413 TGGATAGATATCGGACGGACA 57.572 47.619 0.00 0.00 33.52 4.02
804 808 3.425892 CGTTGGATAGATATCGGACGGAC 60.426 52.174 14.04 0.00 37.69 4.79
936 941 1.865865 TTGCGAGGACTGAACAGAAC 58.134 50.000 8.87 1.29 0.00 3.01
1179 1189 0.104120 TGAATCCCGCCGTGATACAG 59.896 55.000 0.00 0.00 0.00 2.74
1186 1196 1.677820 CCTAACTTTGAATCCCGCCGT 60.678 52.381 0.00 0.00 0.00 5.68
1260 1293 4.523813 CATGCGAAAACACGAAAACTACT 58.476 39.130 0.00 0.00 35.09 2.57
1314 1347 2.579873 CCTTCATGCCCCAGATTACTG 58.420 52.381 0.00 0.00 43.12 2.74
1321 1354 1.610554 CCAAAGCCTTCATGCCCCAG 61.611 60.000 0.00 0.00 0.00 4.45
1339 1372 0.991920 TGACCAGATCAAGAACCCCC 59.008 55.000 0.00 0.00 33.02 5.40
1431 1469 5.594725 CAGTATAGTCCTCTAAGGCTGTCAA 59.405 44.000 0.00 0.00 34.61 3.18
1462 1500 0.318022 GGTAAAAACAACACGGCCGG 60.318 55.000 31.76 20.69 0.00 6.13
1487 1525 9.534565 GAGAATCAACAAGCAATATCACTAGTA 57.465 33.333 0.00 0.00 33.17 1.82
1489 1527 7.714377 AGGAGAATCAACAAGCAATATCACTAG 59.286 37.037 0.00 0.00 36.25 2.57
1490 1528 7.568349 AGGAGAATCAACAAGCAATATCACTA 58.432 34.615 0.00 0.00 36.25 2.74
1491 1529 6.421485 AGGAGAATCAACAAGCAATATCACT 58.579 36.000 0.00 0.00 36.25 3.41
1493 1531 6.405065 GCAAGGAGAATCAACAAGCAATATCA 60.405 38.462 0.00 0.00 36.25 2.15
1495 1533 5.655532 AGCAAGGAGAATCAACAAGCAATAT 59.344 36.000 0.00 0.00 36.25 1.28
1500 1538 3.505293 AGAAGCAAGGAGAATCAACAAGC 59.495 43.478 0.00 0.00 36.25 4.01
1563 1630 3.091545 ACAAATACAATGAGGTGCCCTG 58.908 45.455 0.00 0.00 31.76 4.45
1565 1632 4.705023 ACTAACAAATACAATGAGGTGCCC 59.295 41.667 0.00 0.00 0.00 5.36
1669 1756 1.852309 ACAATCATACCTGCCATGGGA 59.148 47.619 15.13 10.50 0.00 4.37
1880 1981 6.834451 ACCAGAGGATAAAGTCGAATTAGAGA 59.166 38.462 0.00 0.00 0.00 3.10
1978 2079 1.086696 ATGTGTATGTCCACTTGCGC 58.913 50.000 0.00 0.00 36.30 6.09
2220 2357 5.774690 TGGCACTGGAATAAGAACAGAAAAT 59.225 36.000 0.00 0.00 36.17 1.82
2393 2539 7.983307 AGTACAATACTTGAGTAGGACTTACG 58.017 38.462 0.00 0.00 34.86 3.18
2428 2584 8.232913 GGTTCATGACCCAGCTAATAATTTAA 57.767 34.615 4.06 0.00 43.06 1.52
2631 2803 6.128117 ACTCAAAACAAGCACGAAAAGACTTA 60.128 34.615 0.00 0.00 0.00 2.24
2801 3048 4.816385 GCTAGCTGTTGACTATTATTGCCA 59.184 41.667 7.70 0.00 0.00 4.92
2853 3100 2.672195 CGTCACTTGAGATACAGCAGCA 60.672 50.000 0.00 0.00 0.00 4.41
3111 3363 3.099267 ACCTTAATGATCGGCTTCTCG 57.901 47.619 0.00 0.00 0.00 4.04
3141 3393 7.769044 GGCTGGTCATCAGTACTTAATAAAAGA 59.231 37.037 0.00 0.00 45.08 2.52
3148 3400 6.183360 GGAATAGGCTGGTCATCAGTACTTAA 60.183 42.308 0.00 0.00 45.08 1.85
3149 3401 5.304614 GGAATAGGCTGGTCATCAGTACTTA 59.695 44.000 0.00 0.00 45.08 2.24
3150 3402 4.101741 GGAATAGGCTGGTCATCAGTACTT 59.898 45.833 0.00 0.00 45.08 2.24
3152 3404 3.643792 AGGAATAGGCTGGTCATCAGTAC 59.356 47.826 0.00 0.00 45.08 2.73
3153 3405 3.643320 CAGGAATAGGCTGGTCATCAGTA 59.357 47.826 0.00 0.00 45.08 2.74
3154 3406 2.437281 CAGGAATAGGCTGGTCATCAGT 59.563 50.000 0.00 0.00 45.08 3.41
3155 3407 2.702478 TCAGGAATAGGCTGGTCATCAG 59.298 50.000 0.00 0.00 46.03 2.90
3156 3408 2.702478 CTCAGGAATAGGCTGGTCATCA 59.298 50.000 0.00 0.00 0.00 3.07
3157 3409 2.703007 ACTCAGGAATAGGCTGGTCATC 59.297 50.000 0.00 0.00 0.00 2.92
3158 3410 2.769209 ACTCAGGAATAGGCTGGTCAT 58.231 47.619 0.00 0.00 0.00 3.06
3170 3422 1.768275 TCAGTGCTTCCAACTCAGGAA 59.232 47.619 0.00 0.00 45.12 3.36
3244 3702 4.299586 TGATGTTATGACAAGAAGGCCA 57.700 40.909 5.01 0.00 39.66 5.36
3378 3837 2.286418 GGCAGAGACAACAGTCAAAACG 60.286 50.000 0.00 0.00 34.69 3.60
3461 3923 4.512944 ACAGGCAGTGCAATATAAAGATCG 59.487 41.667 18.61 0.00 0.00 3.69
3477 3939 3.882888 TCCTGAAAAACTGTTACAGGCAG 59.117 43.478 23.79 13.70 45.11 4.85
3480 3942 7.543756 TCTTTTTCCTGAAAAACTGTTACAGG 58.456 34.615 23.16 23.16 43.08 4.00
3481 3943 8.980143 TTCTTTTTCCTGAAAAACTGTTACAG 57.020 30.769 11.21 11.21 43.08 2.74
3503 3970 3.365969 GCCACCGACGAATTTGATTTTCT 60.366 43.478 0.00 0.00 0.00 2.52
3521 3988 2.743928 CAGAACGCCTCCTGCCAC 60.744 66.667 0.00 0.00 36.24 5.01
3580 4047 2.941720 CTCTAGGCTCAACCAGAAATGC 59.058 50.000 0.00 0.00 43.14 3.56
3581 4048 4.213564 ACTCTAGGCTCAACCAGAAATG 57.786 45.455 0.00 0.00 43.14 2.32
3589 4056 3.075148 GTTCCCAAACTCTAGGCTCAAC 58.925 50.000 0.00 0.00 32.36 3.18
3637 4111 5.348724 ACTGTAGATCTTTGCATGTAACACG 59.651 40.000 0.00 0.00 0.00 4.49
3642 4116 8.043113 AGATCAAACTGTAGATCTTTGCATGTA 58.957 33.333 15.77 0.00 46.52 2.29
3650 4124 6.219473 CGGCATAGATCAAACTGTAGATCTT 58.781 40.000 22.57 12.66 46.52 2.40
3652 4126 4.926238 CCGGCATAGATCAAACTGTAGATC 59.074 45.833 12.62 12.62 40.68 2.75
3767 4242 6.667414 TGCCATGAAAAGGTTATAGTTTCCAT 59.333 34.615 0.00 0.00 31.57 3.41
3781 4258 9.311916 TCGGAAAATATAAATTGCCATGAAAAG 57.688 29.630 0.00 0.00 0.00 2.27
3843 4321 7.965107 GCAAATCTGACAATAAACTGAACTAGG 59.035 37.037 0.00 0.00 0.00 3.02
3845 4323 7.360861 CGGCAAATCTGACAATAAACTGAACTA 60.361 37.037 0.00 0.00 0.00 2.24
3847 4325 5.569059 CGGCAAATCTGACAATAAACTGAAC 59.431 40.000 0.00 0.00 0.00 3.18
3856 4334 1.538047 AGCACGGCAAATCTGACAAT 58.462 45.000 0.00 0.00 0.00 2.71
3860 4338 0.890542 AGCAAGCACGGCAAATCTGA 60.891 50.000 0.00 0.00 0.00 3.27
3917 4396 6.154877 AGGCATGACATGTTTAATTTGATGGA 59.845 34.615 16.62 0.00 0.00 3.41
3918 4397 6.342906 AGGCATGACATGTTTAATTTGATGG 58.657 36.000 16.62 0.00 0.00 3.51
3922 4401 7.276218 CCAGTAAGGCATGACATGTTTAATTTG 59.724 37.037 16.62 12.79 0.00 2.32
3923 4402 7.178274 TCCAGTAAGGCATGACATGTTTAATTT 59.822 33.333 16.62 5.65 37.29 1.82
3924 4403 6.663093 TCCAGTAAGGCATGACATGTTTAATT 59.337 34.615 16.62 7.41 37.29 1.40
3925 4404 6.095440 GTCCAGTAAGGCATGACATGTTTAAT 59.905 38.462 16.62 11.66 37.29 1.40
3926 4405 5.414454 GTCCAGTAAGGCATGACATGTTTAA 59.586 40.000 16.62 0.00 37.29 1.52
3927 4406 4.941263 GTCCAGTAAGGCATGACATGTTTA 59.059 41.667 16.62 12.33 37.29 2.01
3928 4407 3.758554 GTCCAGTAAGGCATGACATGTTT 59.241 43.478 16.62 13.21 37.29 2.83
3929 4408 3.244875 TGTCCAGTAAGGCATGACATGTT 60.245 43.478 16.62 6.88 37.29 2.71
3930 4409 2.305635 TGTCCAGTAAGGCATGACATGT 59.694 45.455 16.62 0.00 37.29 3.21
3931 4410 2.989909 TGTCCAGTAAGGCATGACATG 58.010 47.619 11.27 11.27 37.29 3.21
3932 4411 3.939740 ATGTCCAGTAAGGCATGACAT 57.060 42.857 0.00 0.00 40.74 3.06
3933 4412 3.719268 AATGTCCAGTAAGGCATGACA 57.281 42.857 0.00 0.00 39.95 3.58
3934 4413 4.009675 TCAAATGTCCAGTAAGGCATGAC 58.990 43.478 0.00 0.00 35.31 3.06
3935 4414 4.299586 TCAAATGTCCAGTAAGGCATGA 57.700 40.909 0.00 0.00 35.31 3.07
3936 4415 5.389859 TTTCAAATGTCCAGTAAGGCATG 57.610 39.130 0.00 0.00 35.31 4.06
3937 4416 6.400568 CAATTTCAAATGTCCAGTAAGGCAT 58.599 36.000 0.00 0.00 36.22 4.40
3938 4417 5.782047 CAATTTCAAATGTCCAGTAAGGCA 58.218 37.500 0.00 0.00 37.29 4.75
3939 4418 4.627035 GCAATTTCAAATGTCCAGTAAGGC 59.373 41.667 0.00 0.00 37.29 4.35
3940 4419 5.782047 TGCAATTTCAAATGTCCAGTAAGG 58.218 37.500 0.00 0.00 39.47 2.69
3941 4420 6.183360 GCATGCAATTTCAAATGTCCAGTAAG 60.183 38.462 14.21 0.00 0.00 2.34
3942 4421 5.638657 GCATGCAATTTCAAATGTCCAGTAA 59.361 36.000 14.21 0.00 0.00 2.24
3943 4422 5.047164 AGCATGCAATTTCAAATGTCCAGTA 60.047 36.000 21.98 0.00 0.00 2.74
3944 4423 3.998341 GCATGCAATTTCAAATGTCCAGT 59.002 39.130 14.21 0.00 0.00 4.00
3986 4465 0.672342 CACCCCGTATCGTAGAAGGG 59.328 60.000 0.00 0.00 45.18 3.95
3987 4466 0.031721 GCACCCCGTATCGTAGAAGG 59.968 60.000 0.00 0.00 43.58 3.46
3988 4467 1.030457 AGCACCCCGTATCGTAGAAG 58.970 55.000 0.00 0.00 43.58 2.85
3989 4468 1.477553 AAGCACCCCGTATCGTAGAA 58.522 50.000 0.00 0.00 43.58 2.10
3991 4470 3.255149 AGATAAAGCACCCCGTATCGTAG 59.745 47.826 0.00 0.00 0.00 3.51
3992 4471 3.225104 AGATAAAGCACCCCGTATCGTA 58.775 45.455 0.00 0.00 0.00 3.43
3995 4474 4.338379 AGAAGATAAAGCACCCCGTATC 57.662 45.455 0.00 0.00 0.00 2.24
3996 4475 4.772886 AAGAAGATAAAGCACCCCGTAT 57.227 40.909 0.00 0.00 0.00 3.06
4018 4515 7.335924 GCAGAAGGTTACAGGTGTATGAATTAA 59.664 37.037 0.00 0.00 0.00 1.40
4020 4517 5.648092 GCAGAAGGTTACAGGTGTATGAATT 59.352 40.000 0.00 0.00 0.00 2.17
4021 4518 5.045578 AGCAGAAGGTTACAGGTGTATGAAT 60.046 40.000 0.00 0.00 0.00 2.57
4025 4525 3.838317 TGAGCAGAAGGTTACAGGTGTAT 59.162 43.478 0.00 0.00 0.00 2.29
4063 4563 6.945636 AATTATTCCCCATCTATACCGACA 57.054 37.500 0.00 0.00 0.00 4.35
4069 4569 9.057911 CCCTAGTCAAATTATTCCCCATCTATA 57.942 37.037 0.00 0.00 0.00 1.31
4070 4570 7.531269 GCCCTAGTCAAATTATTCCCCATCTAT 60.531 40.741 0.00 0.00 0.00 1.98
4075 4575 3.434453 CGCCCTAGTCAAATTATTCCCCA 60.434 47.826 0.00 0.00 0.00 4.96
4091 4591 1.530891 CGATCTTCCCTCCGCCCTA 60.531 63.158 0.00 0.00 0.00 3.53
4097 4597 1.132500 ATTGTCCCGATCTTCCCTCC 58.868 55.000 0.00 0.00 0.00 4.30
4104 4604 4.444876 CCTGGTCAAATATTGTCCCGATCT 60.445 45.833 4.36 0.00 37.96 2.75
4127 4627 0.654472 CAGAAACGCAAGCACGACAC 60.654 55.000 0.00 0.00 45.62 3.67
4166 4666 0.041400 TGCTTGATGTTCAACACGCG 60.041 50.000 3.53 3.53 32.21 6.01
4169 4669 2.755836 ACGTGCTTGATGTTCAACAC 57.244 45.000 0.00 10.35 36.25 3.32
4177 4677 2.946564 TCAGACAGTACGTGCTTGATG 58.053 47.619 2.37 2.96 0.00 3.07
4210 4710 0.107165 ATTCCCAGACTTTAGCGGGC 60.107 55.000 0.00 0.00 38.68 6.13
4211 4711 1.475213 GGATTCCCAGACTTTAGCGGG 60.475 57.143 0.00 0.00 40.32 6.13
4212 4712 1.806623 CGGATTCCCAGACTTTAGCGG 60.807 57.143 0.00 0.00 0.00 5.52
4237 4739 0.039256 CAAAGTACGGACCGACGGAA 60.039 55.000 23.38 0.00 38.39 4.30
4240 4742 0.239347 AGACAAAGTACGGACCGACG 59.761 55.000 23.38 4.25 40.31 5.12
4243 4745 3.176708 CACATAGACAAAGTACGGACCG 58.823 50.000 13.61 13.61 0.00 4.79
4257 4759 5.221481 TGGTACAAGTTTTCGGACACATAGA 60.221 40.000 0.00 0.00 31.92 1.98
4298 4800 5.123227 ACCTTCAAAGAATGACAAAGTCGA 58.877 37.500 0.00 0.00 37.92 4.20
4349 4851 3.564027 GGCATACCGCGTGTGAGC 61.564 66.667 4.92 10.83 43.84 4.26
4369 4871 3.387374 TGAAACCCGTGTTACAGGAAGTA 59.613 43.478 6.62 0.00 33.30 2.24
4371 4873 2.841215 TGAAACCCGTGTTACAGGAAG 58.159 47.619 6.62 0.54 33.30 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.