Multiple sequence alignment - TraesCS1B01G249300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G249300 chr1B 100.000 7809 0 0 1 7809 441661080 441653272 0.000000e+00 14421.0
1 TraesCS1B01G249300 chr1A 96.939 3430 84 14 2187 5602 409829104 409832526 0.000000e+00 5733.0
2 TraesCS1B01G249300 chr1A 94.010 2237 68 27 1 2195 409826834 409829046 0.000000e+00 3328.0
3 TraesCS1B01G249300 chr1A 94.462 1553 57 17 5544 7085 409832496 409834030 0.000000e+00 2364.0
4 TraesCS1B01G249300 chr1A 87.109 256 13 9 7070 7314 409834050 409834296 9.980000e-69 272.0
5 TraesCS1B01G249300 chr1A 94.253 87 5 0 4823 4909 409831654 409831740 4.920000e-27 134.0
6 TraesCS1B01G249300 chr1A 92.000 50 4 0 7385 7434 409834617 409834666 3.910000e-08 71.3
7 TraesCS1B01G249300 chr1A 100.000 30 0 0 2071 2100 320769581 320769552 1.000000e-03 56.5
8 TraesCS1B01G249300 chr1D 93.697 2253 86 13 3330 5573 326973206 326971001 0.000000e+00 3323.0
9 TraesCS1B01G249300 chr1D 92.889 2236 86 33 1 2195 326976538 326974335 0.000000e+00 3181.0
10 TraesCS1B01G249300 chr1D 94.510 1876 59 20 5573 7429 326971030 326969180 0.000000e+00 2854.0
11 TraesCS1B01G249300 chr1D 95.330 1092 42 5 2187 3275 326974277 326973192 0.000000e+00 1725.0
12 TraesCS1B01G249300 chr5B 97.105 380 10 1 7431 7809 582156141 582156520 2.380000e-179 640.0
13 TraesCS1B01G249300 chr7B 96.834 379 12 0 7431 7809 548474463 548474841 1.110000e-177 634.0
14 TraesCS1B01G249300 chr7B 96.834 379 12 0 7431 7809 583624215 583623837 1.110000e-177 634.0
15 TraesCS1B01G249300 chr7B 93.490 384 20 4 7426 7809 609703199 609703577 4.090000e-157 566.0
16 TraesCS1B01G249300 chr7B 80.851 94 15 3 2077 2168 594683768 594683676 3.910000e-08 71.3
17 TraesCS1B01G249300 chr2B 96.552 377 13 0 7431 7807 27907188 27907564 6.650000e-175 625.0
18 TraesCS1B01G249300 chr2B 79.167 96 14 5 2075 2168 117609863 117609954 2.350000e-05 62.1
19 TraesCS1B01G249300 chr4B 95.778 379 16 0 7431 7809 385646199 385645821 5.180000e-171 612.0
20 TraesCS1B01G249300 chr4B 95.778 379 16 0 7431 7809 495235224 495234846 5.180000e-171 612.0
21 TraesCS1B01G249300 chr4B 100.000 28 0 0 2138 2165 66780727 66780754 1.400000e-02 52.8
22 TraesCS1B01G249300 chr3D 93.947 380 22 1 7431 7809 540257964 540258343 2.440000e-159 573.0
23 TraesCS1B01G249300 chr5A 93.404 379 25 0 7431 7809 512711303 512711681 5.290000e-156 562.0
24 TraesCS1B01G249300 chr3B 81.739 115 18 3 2078 2191 95164527 95164415 8.340000e-15 93.5
25 TraesCS1B01G249300 chr2A 98.000 50 1 0 3277 3326 8629552 8629503 3.880000e-13 87.9
26 TraesCS1B01G249300 chr7D 80.556 108 20 1 2078 2185 591219169 591219275 1.810000e-11 82.4
27 TraesCS1B01G249300 chr4D 92.453 53 0 4 3277 3326 418859459 418859408 1.090000e-08 73.1
28 TraesCS1B01G249300 chrUn 79.798 99 19 1 2088 2185 31553471 31553373 3.910000e-08 71.3
29 TraesCS1B01G249300 chr2D 79.798 99 19 1 2088 2185 642954829 642954731 3.910000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G249300 chr1B 441653272 441661080 7808 True 14421.000000 14421 100.000000 1 7809 1 chr1B.!!$R1 7808
1 TraesCS1B01G249300 chr1A 409826834 409834666 7832 False 1983.716667 5733 93.128833 1 7434 6 chr1A.!!$F1 7433
2 TraesCS1B01G249300 chr1D 326969180 326976538 7358 True 2770.750000 3323 94.106500 1 7429 4 chr1D.!!$R1 7428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 599 1.348696 TCCCGTGTACCTTTTCTTCCC 59.651 52.381 0.00 0.0 0.00 3.97 F
1222 1267 2.503331 TGTGACAATTCAACATCCGCT 58.497 42.857 0.00 0.0 31.90 5.52 F
2259 2405 2.163613 CCTTGTATTTTGGAACGGAGGC 59.836 50.000 0.00 0.0 0.00 4.70 F
3376 3531 0.838608 TACTTCCCCCACACGTGTTT 59.161 50.000 20.79 0.0 0.00 2.83 F
3854 4010 0.631753 TGGGTTTTGTTCTCCCACCA 59.368 50.000 0.00 0.0 45.19 4.17 F
4759 4922 2.041216 GTTATGGGGTTGAACTGGTCCT 59.959 50.000 0.00 0.0 0.00 3.85 F
5766 5968 0.671781 GTAGCCTCACACTGGTGCTG 60.672 60.000 0.17 0.0 44.87 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2405 0.317160 TCTGTACTTCCGGCACACTG 59.683 55.000 0.00 0.00 0.00 3.66 R
2906 3054 1.873591 ACAAAACGAGATGACAGCACC 59.126 47.619 0.00 0.00 0.00 5.01 R
3854 4010 0.036010 CCCAGTTCCTGCACGAGATT 60.036 55.000 0.00 0.00 0.00 2.40 R
4741 4904 0.405585 CAGGACCAGTTCAACCCCAT 59.594 55.000 0.00 0.00 0.00 4.00 R
5744 5946 0.320771 CACCAGTGTGAGGCTACCAC 60.321 60.000 7.71 7.71 45.76 4.16 R
6495 6698 0.679960 GCCCAGGTGGTTCCATGTAC 60.680 60.000 0.00 0.00 39.02 2.90 R
7495 8006 0.035739 ACAAACCGAGGCAATACCGT 59.964 50.000 0.00 0.00 46.52 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
296 305 2.159085 CCGCCGTAATCTCCTTCTTCTT 60.159 50.000 0.00 0.00 0.00 2.52
298 307 3.459145 GCCGTAATCTCCTTCTTCTTCC 58.541 50.000 0.00 0.00 0.00 3.46
299 308 3.133183 GCCGTAATCTCCTTCTTCTTCCT 59.867 47.826 0.00 0.00 0.00 3.36
300 309 4.738243 GCCGTAATCTCCTTCTTCTTCCTC 60.738 50.000 0.00 0.00 0.00 3.71
301 310 4.647399 CCGTAATCTCCTTCTTCTTCCTCT 59.353 45.833 0.00 0.00 0.00 3.69
302 311 5.128008 CCGTAATCTCCTTCTTCTTCCTCTT 59.872 44.000 0.00 0.00 0.00 2.85
307 316 3.093057 TCCTTCTTCTTCCTCTTCCTCG 58.907 50.000 0.00 0.00 0.00 4.63
317 326 1.867919 CTCTTCCTCGTCAGGTGCGT 61.868 60.000 0.00 0.00 41.28 5.24
319 328 2.820767 CTTCCTCGTCAGGTGCGTCC 62.821 65.000 0.00 0.00 41.28 4.79
336 345 1.690985 CCCTCTTCCCACCTCTCCC 60.691 68.421 0.00 0.00 0.00 4.30
574 593 3.708121 CCCTACTATCCCGTGTACCTTTT 59.292 47.826 0.00 0.00 0.00 2.27
580 599 1.348696 TCCCGTGTACCTTTTCTTCCC 59.651 52.381 0.00 0.00 0.00 3.97
655 696 4.754667 GGGGACACCGCGTTCCTC 62.755 72.222 15.78 10.04 43.90 3.71
661 702 3.692406 ACCGCGTTCCTCCTGTCC 61.692 66.667 4.92 0.00 0.00 4.02
714 758 6.257193 ACCTTTGTTTTTACTGTAGACGAGTG 59.743 38.462 0.00 0.00 0.00 3.51
1222 1267 2.503331 TGTGACAATTCAACATCCGCT 58.497 42.857 0.00 0.00 31.90 5.52
1236 1281 5.936686 ACATCCGCTATCAATTTGATGAG 57.063 39.130 19.81 13.88 37.70 2.90
1255 1300 4.569943 TGAGGCATAGTCTTTCTTGTGTC 58.430 43.478 0.00 0.00 0.00 3.67
1284 1329 4.681025 TCAATTTTTCAGCGCTGATGTTTC 59.319 37.500 38.40 0.00 39.64 2.78
1369 1414 3.114606 TCTAATTGATGGTCTGCCCTCA 58.885 45.455 0.00 0.00 37.58 3.86
1488 1534 4.830826 AGGGACGACTGAATTTTGTTTC 57.169 40.909 0.00 0.00 0.00 2.78
1489 1535 4.461198 AGGGACGACTGAATTTTGTTTCT 58.539 39.130 0.00 0.00 0.00 2.52
1490 1536 4.887655 AGGGACGACTGAATTTTGTTTCTT 59.112 37.500 0.00 0.00 0.00 2.52
1491 1537 5.008712 AGGGACGACTGAATTTTGTTTCTTC 59.991 40.000 0.00 0.00 0.00 2.87
1673 1724 3.811497 GGTAATAAACGGGAATCCCTTCG 59.189 47.826 17.45 5.80 42.67 3.79
1694 1745 7.913821 CCTTCGGTTTATTAGGACTTTAATTGC 59.086 37.037 0.00 0.00 0.00 3.56
1763 1837 6.259638 TGTTTACGTTTCATTCCTTGACAAC 58.740 36.000 0.00 0.00 32.84 3.32
1859 1933 3.709653 TGTACATCTAGTTGATCCCCACC 59.290 47.826 7.81 0.00 32.05 4.61
1895 1969 5.048224 TCTCCTCAGTTTTAACGTCCTGTAG 60.048 44.000 0.00 0.00 0.00 2.74
2069 2148 5.041940 GGTACTTTATCAGTGTTCTAGCCG 58.958 45.833 0.00 0.00 35.97 5.52
2087 2166 2.614481 GCCGTCAACAATACTCCCTTCA 60.614 50.000 0.00 0.00 0.00 3.02
2259 2405 2.163613 CCTTGTATTTTGGAACGGAGGC 59.836 50.000 0.00 0.00 0.00 4.70
2675 2822 3.751518 TCCAGGAAACAAGAAAGCTACC 58.248 45.455 0.00 0.00 0.00 3.18
2919 3067 1.680735 AGATCGAGGTGCTGTCATCTC 59.319 52.381 0.00 3.28 44.97 2.75
3007 3158 7.172868 TGATTGGCATCAATTTTCTGTATGT 57.827 32.000 0.00 0.00 43.08 2.29
3223 3378 7.595875 TGACTGACAATTAAAATTGATGCTGTG 59.404 33.333 19.53 6.95 46.72 3.66
3311 3466 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
3325 3480 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
3326 3481 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
3327 3482 3.478063 GCTTTGTTGTTGTTGTTGTTGC 58.522 40.909 0.00 0.00 0.00 4.17
3376 3531 0.838608 TACTTCCCCCACACGTGTTT 59.161 50.000 20.79 0.00 0.00 2.83
3588 3743 3.498777 GGGTTCAAGCTTACAGACTTGTC 59.501 47.826 0.00 0.00 43.05 3.18
3754 3910 3.676291 TTTTTATTTGCTGGCCACCTC 57.324 42.857 0.00 0.00 0.00 3.85
3853 4009 3.524346 TGGGTTTTGTTCTCCCACC 57.476 52.632 0.00 0.00 45.19 4.61
3854 4010 0.631753 TGGGTTTTGTTCTCCCACCA 59.368 50.000 0.00 0.00 45.19 4.17
3898 4054 3.575965 AAAGAACATCGTGGAATTGGC 57.424 42.857 0.00 0.00 0.00 4.52
4033 4191 7.148239 CCCTCCGATCCTAATTAATTTGTATGC 60.148 40.741 5.91 0.00 0.00 3.14
4048 4206 8.978874 AATTTGTATGCACATTGTATAGAGGA 57.021 30.769 0.00 0.00 33.76 3.71
4104 4262 2.439409 TGGTCTTCCATGTGATGCAAG 58.561 47.619 0.00 0.00 39.03 4.01
4225 4383 4.281898 ACCTTAAATTCACGCAGTAGGT 57.718 40.909 0.00 0.00 41.61 3.08
4642 4805 8.349245 CAGTGTTTGAACTTGGAATACATGTAA 58.651 33.333 10.14 0.00 36.54 2.41
4711 4874 2.993899 GGGTTGACGACTTGACACTATG 59.006 50.000 0.00 0.00 0.00 2.23
4741 4904 7.420029 AGTCTAGGAAGTAGGAAGGATTGTTA 58.580 38.462 0.00 0.00 0.00 2.41
4759 4922 2.041216 GTTATGGGGTTGAACTGGTCCT 59.959 50.000 0.00 0.00 0.00 3.85
4802 4967 9.003658 CATACCATGATCCTACCAATTTTACTC 57.996 37.037 0.00 0.00 0.00 2.59
4833 4998 3.055530 TGCAAAGTGGTGGATTGTTTTGT 60.056 39.130 0.00 0.00 0.00 2.83
4930 5095 2.890945 GGGTTATATTGGACATGGGCAC 59.109 50.000 0.00 0.00 0.00 5.01
4931 5096 3.561143 GGTTATATTGGACATGGGCACA 58.439 45.455 0.00 0.00 0.00 4.57
5140 5305 7.891561 ACGACCAATTTTATGAAATTTGAGGA 58.108 30.769 14.02 0.00 42.14 3.71
5632 5833 3.181451 GCTTGGTGATCCCATATGAGACA 60.181 47.826 3.65 0.00 44.74 3.41
5633 5834 4.384056 CTTGGTGATCCCATATGAGACAC 58.616 47.826 3.65 7.68 44.74 3.67
5653 5854 5.911752 ACACAACCACAATAATTGCTCAAA 58.088 33.333 0.00 0.00 0.00 2.69
5682 5883 4.821260 TGTTTGAATACTGCACAGACATGT 59.179 37.500 0.00 0.00 41.57 3.21
5744 5946 1.558756 AGAGATCAAGGACAAGGGCTG 59.441 52.381 0.00 0.00 0.00 4.85
5766 5968 0.671781 GTAGCCTCACACTGGTGCTG 60.672 60.000 0.17 0.00 44.87 4.41
5777 5979 3.519510 ACACTGGTGCTGTAGTTATCCAT 59.480 43.478 0.17 0.00 0.00 3.41
5820 6022 5.069648 TCCTACATAGCAGGATGAAGAAGTG 59.930 44.000 0.79 0.00 39.69 3.16
6048 6250 3.290710 GCATCAAAATTGGCTAGGAGGA 58.709 45.455 0.00 0.00 0.00 3.71
6087 6289 7.428826 CCCCTGTATCAAGCAAAAAGATATTC 58.571 38.462 0.00 0.00 0.00 1.75
6215 6418 9.046296 CCATCATTATTGGTAGTGTTTAGTCTC 57.954 37.037 0.00 0.00 0.00 3.36
6322 6525 1.134367 GGTGTAGCAGATCGTGTAGCA 59.866 52.381 0.00 0.00 0.00 3.49
6371 6574 1.701847 AGGTGAGACAACAAGAGCCAT 59.298 47.619 0.00 0.00 0.00 4.40
6390 6593 4.405671 GCCTCAGCTCAGCCTGCA 62.406 66.667 0.00 0.00 35.50 4.41
6471 6674 1.877576 TAGACTCAGCTGCACCCGTG 61.878 60.000 9.47 0.00 0.00 4.94
6626 6829 8.386606 GCTACTACTGTTTTCATCTTCTTCATG 58.613 37.037 0.00 0.00 0.00 3.07
6710 6913 4.091365 CGATTATCACTTGTGAGTTGCGAA 59.909 41.667 9.39 0.00 32.54 4.70
6790 6993 2.926200 CAGCAGATCAAGAGTACAACCG 59.074 50.000 0.00 0.00 0.00 4.44
7128 7383 2.675032 GCCTATTTGGTTTGCTCCTTGC 60.675 50.000 0.00 0.00 39.23 4.01
7211 7467 1.271379 CACATGTGTTGCCAGCATCTT 59.729 47.619 18.03 0.00 0.00 2.40
7226 7482 2.636519 CATCTTGCAATCGCTGAATCG 58.363 47.619 0.00 0.00 39.64 3.34
7238 7494 3.938963 TCGCTGAATCGAAGGCTAAATTT 59.061 39.130 0.00 0.00 35.31 1.82
7242 7502 5.163713 GCTGAATCGAAGGCTAAATTTGACT 60.164 40.000 0.00 0.00 0.00 3.41
7246 7506 6.670077 ATCGAAGGCTAAATTTGACTTCTC 57.330 37.500 22.66 8.69 36.34 2.87
7368 7645 6.930722 CCCAAAAAGAAGGTAGTAGAAACGTA 59.069 38.462 0.00 0.00 0.00 3.57
7426 7937 0.951558 AGCACGATTTCACAACCCAC 59.048 50.000 0.00 0.00 0.00 4.61
7430 7941 2.156891 CACGATTTCACAACCCACTACG 59.843 50.000 0.00 0.00 0.00 3.51
7434 7945 2.465860 TTCACAACCCACTACGATGG 57.534 50.000 0.00 0.00 39.71 3.51
7435 7946 1.344065 TCACAACCCACTACGATGGT 58.656 50.000 0.00 0.00 38.16 3.55
7436 7947 1.001520 TCACAACCCACTACGATGGTG 59.998 52.381 0.00 0.00 38.16 4.17
7441 7952 4.835927 CACTACGATGGTGGGAGC 57.164 61.111 0.00 0.00 0.00 4.70
7442 7953 1.226974 CACTACGATGGTGGGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
7443 7954 1.379443 ACTACGATGGTGGGAGCGA 60.379 57.895 0.00 0.00 0.00 4.93
7444 7955 0.755698 ACTACGATGGTGGGAGCGAT 60.756 55.000 0.00 0.00 0.00 4.58
7445 7956 0.319040 CTACGATGGTGGGAGCGATG 60.319 60.000 0.00 0.00 0.00 3.84
7446 7957 1.040893 TACGATGGTGGGAGCGATGT 61.041 55.000 0.00 0.00 0.00 3.06
7447 7958 1.592669 CGATGGTGGGAGCGATGTC 60.593 63.158 0.00 0.00 0.00 3.06
7448 7959 1.592669 GATGGTGGGAGCGATGTCG 60.593 63.158 0.00 0.00 43.27 4.35
7449 7960 2.978452 GATGGTGGGAGCGATGTCGG 62.978 65.000 4.44 0.00 40.23 4.79
7465 7976 3.361977 GGTGACGCGGCAATGGTT 61.362 61.111 20.67 0.00 0.00 3.67
7466 7977 2.126888 GTGACGCGGCAATGGTTG 60.127 61.111 20.67 0.00 0.00 3.77
7477 7988 0.304705 CAATGGTTGCGATAGTCGGC 59.695 55.000 1.29 0.00 40.84 5.54
7478 7989 0.178068 AATGGTTGCGATAGTCGGCT 59.822 50.000 0.00 0.00 40.84 5.52
7479 7990 0.249489 ATGGTTGCGATAGTCGGCTC 60.249 55.000 0.00 0.00 40.84 4.70
7480 7991 1.320344 TGGTTGCGATAGTCGGCTCT 61.320 55.000 0.00 0.00 40.84 4.09
7481 7992 0.179108 GGTTGCGATAGTCGGCTCTT 60.179 55.000 0.00 0.00 40.84 2.85
7482 7993 1.201343 GTTGCGATAGTCGGCTCTTC 58.799 55.000 0.00 0.00 40.84 2.87
7483 7994 1.103803 TTGCGATAGTCGGCTCTTCT 58.896 50.000 0.00 0.00 40.84 2.85
7484 7995 0.663688 TGCGATAGTCGGCTCTTCTC 59.336 55.000 0.00 0.00 40.84 2.87
7485 7996 0.039888 GCGATAGTCGGCTCTTCTCC 60.040 60.000 0.00 0.00 40.84 3.71
7487 7998 0.594110 GATAGTCGGCTCTTCTCCGG 59.406 60.000 0.00 0.00 46.43 5.14
7489 8000 4.856607 GTCGGCTCTTCTCCGGCG 62.857 72.222 0.00 0.00 46.43 6.46
7492 8003 4.070552 GGCTCTTCTCCGGCGTGT 62.071 66.667 6.01 0.00 0.00 4.49
7493 8004 2.507324 GCTCTTCTCCGGCGTGTC 60.507 66.667 6.01 0.00 0.00 3.67
7494 8005 2.182030 CTCTTCTCCGGCGTGTCC 59.818 66.667 6.01 0.00 0.00 4.02
7495 8006 2.599281 TCTTCTCCGGCGTGTCCA 60.599 61.111 6.01 0.00 34.01 4.02
7496 8007 2.432628 CTTCTCCGGCGTGTCCAC 60.433 66.667 6.01 0.00 34.01 4.02
7507 8018 2.763651 GTGTCCACGGTATTGCCTC 58.236 57.895 0.00 0.00 34.25 4.70
7508 8019 1.082117 GTGTCCACGGTATTGCCTCG 61.082 60.000 0.00 0.00 34.25 4.63
7509 8020 1.520787 GTCCACGGTATTGCCTCGG 60.521 63.158 0.00 0.00 34.25 4.63
7510 8021 1.985662 TCCACGGTATTGCCTCGGT 60.986 57.895 0.00 0.00 34.25 4.69
7511 8022 1.078708 CCACGGTATTGCCTCGGTT 60.079 57.895 0.00 0.00 34.25 4.44
7512 8023 0.675522 CCACGGTATTGCCTCGGTTT 60.676 55.000 0.00 0.00 34.25 3.27
7513 8024 0.446222 CACGGTATTGCCTCGGTTTG 59.554 55.000 0.00 0.00 34.25 2.93
7514 8025 0.035739 ACGGTATTGCCTCGGTTTGT 59.964 50.000 0.00 0.00 34.25 2.83
7515 8026 1.161843 CGGTATTGCCTCGGTTTGTT 58.838 50.000 0.00 0.00 34.25 2.83
7516 8027 1.538075 CGGTATTGCCTCGGTTTGTTT 59.462 47.619 0.00 0.00 34.25 2.83
7517 8028 2.667171 CGGTATTGCCTCGGTTTGTTTG 60.667 50.000 0.00 0.00 34.25 2.93
7518 8029 2.295070 GGTATTGCCTCGGTTTGTTTGT 59.705 45.455 0.00 0.00 0.00 2.83
7519 8030 3.243602 GGTATTGCCTCGGTTTGTTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
7520 8031 2.285827 TTGCCTCGGTTTGTTTGTTG 57.714 45.000 0.00 0.00 0.00 3.33
7521 8032 0.179124 TGCCTCGGTTTGTTTGTTGC 60.179 50.000 0.00 0.00 0.00 4.17
7522 8033 0.102300 GCCTCGGTTTGTTTGTTGCT 59.898 50.000 0.00 0.00 0.00 3.91
7523 8034 1.335496 GCCTCGGTTTGTTTGTTGCTA 59.665 47.619 0.00 0.00 0.00 3.49
7524 8035 2.030274 GCCTCGGTTTGTTTGTTGCTAT 60.030 45.455 0.00 0.00 0.00 2.97
7525 8036 3.564511 CCTCGGTTTGTTTGTTGCTATG 58.435 45.455 0.00 0.00 0.00 2.23
7526 8037 3.564511 CTCGGTTTGTTTGTTGCTATGG 58.435 45.455 0.00 0.00 0.00 2.74
7527 8038 3.215151 TCGGTTTGTTTGTTGCTATGGA 58.785 40.909 0.00 0.00 0.00 3.41
7528 8039 3.252215 TCGGTTTGTTTGTTGCTATGGAG 59.748 43.478 0.00 0.00 0.00 3.86
7529 8040 3.004315 CGGTTTGTTTGTTGCTATGGAGT 59.996 43.478 0.00 0.00 0.00 3.85
7530 8041 4.546570 GGTTTGTTTGTTGCTATGGAGTC 58.453 43.478 0.00 0.00 0.00 3.36
7531 8042 4.219033 GTTTGTTTGTTGCTATGGAGTCG 58.781 43.478 0.00 0.00 0.00 4.18
7532 8043 3.394674 TGTTTGTTGCTATGGAGTCGA 57.605 42.857 0.00 0.00 0.00 4.20
7533 8044 3.734463 TGTTTGTTGCTATGGAGTCGAA 58.266 40.909 0.00 0.00 0.00 3.71
7534 8045 3.745975 TGTTTGTTGCTATGGAGTCGAAG 59.254 43.478 0.00 0.00 0.00 3.79
7535 8046 2.010145 TGTTGCTATGGAGTCGAAGC 57.990 50.000 0.00 0.00 35.51 3.86
7536 8047 1.550524 TGTTGCTATGGAGTCGAAGCT 59.449 47.619 6.14 0.00 35.95 3.74
7537 8048 1.929836 GTTGCTATGGAGTCGAAGCTG 59.070 52.381 6.14 0.00 35.95 4.24
7538 8049 0.179100 TGCTATGGAGTCGAAGCTGC 60.179 55.000 6.14 0.00 35.95 5.25
7539 8050 1.211818 GCTATGGAGTCGAAGCTGCG 61.212 60.000 8.15 8.15 32.18 5.18
7540 8051 0.596083 CTATGGAGTCGAAGCTGCGG 60.596 60.000 15.70 0.00 0.00 5.69
7541 8052 2.629050 TATGGAGTCGAAGCTGCGGC 62.629 60.000 11.84 11.84 35.84 6.53
7560 8071 3.702048 GCGAGGCCCTGTGGTGTA 61.702 66.667 0.00 0.00 0.00 2.90
7561 8072 2.264794 CGAGGCCCTGTGGTGTAC 59.735 66.667 0.00 0.00 0.00 2.90
7562 8073 2.264794 GAGGCCCTGTGGTGTACG 59.735 66.667 0.00 0.00 0.00 3.67
7563 8074 2.203728 AGGCCCTGTGGTGTACGA 60.204 61.111 0.00 0.00 0.00 3.43
7564 8075 1.612442 AGGCCCTGTGGTGTACGAT 60.612 57.895 0.00 0.00 0.00 3.73
7565 8076 1.449601 GGCCCTGTGGTGTACGATG 60.450 63.158 0.00 0.00 0.00 3.84
7566 8077 1.594833 GCCCTGTGGTGTACGATGA 59.405 57.895 0.00 0.00 0.00 2.92
7567 8078 0.739813 GCCCTGTGGTGTACGATGAC 60.740 60.000 0.00 0.00 0.00 3.06
7568 8079 0.895530 CCCTGTGGTGTACGATGACT 59.104 55.000 0.00 0.00 0.00 3.41
7569 8080 1.404181 CCCTGTGGTGTACGATGACTG 60.404 57.143 0.00 0.00 0.00 3.51
7570 8081 1.404181 CCTGTGGTGTACGATGACTGG 60.404 57.143 0.00 0.00 0.00 4.00
7571 8082 0.037697 TGTGGTGTACGATGACTGGC 60.038 55.000 0.00 0.00 0.00 4.85
7572 8083 0.246635 GTGGTGTACGATGACTGGCT 59.753 55.000 0.00 0.00 0.00 4.75
7573 8084 0.246360 TGGTGTACGATGACTGGCTG 59.754 55.000 0.00 0.00 0.00 4.85
7574 8085 1.084370 GGTGTACGATGACTGGCTGC 61.084 60.000 0.00 0.00 0.00 5.25
7575 8086 0.108615 GTGTACGATGACTGGCTGCT 60.109 55.000 0.00 0.00 0.00 4.24
7576 8087 0.608130 TGTACGATGACTGGCTGCTT 59.392 50.000 0.00 0.00 0.00 3.91
7577 8088 1.002366 GTACGATGACTGGCTGCTTG 58.998 55.000 0.00 0.00 0.00 4.01
7578 8089 0.608130 TACGATGACTGGCTGCTTGT 59.392 50.000 0.00 0.00 0.00 3.16
7579 8090 0.952497 ACGATGACTGGCTGCTTGTG 60.952 55.000 0.00 0.00 0.00 3.33
7580 8091 1.642037 CGATGACTGGCTGCTTGTGG 61.642 60.000 0.00 0.00 0.00 4.17
7581 8092 1.930908 GATGACTGGCTGCTTGTGGC 61.931 60.000 0.00 0.00 42.22 5.01
7586 8097 2.653115 GGCTGCTTGTGGCCTTTC 59.347 61.111 3.32 0.00 44.48 2.62
7587 8098 2.256461 GCTGCTTGTGGCCTTTCG 59.744 61.111 3.32 0.00 40.92 3.46
7588 8099 2.956987 CTGCTTGTGGCCTTTCGG 59.043 61.111 3.32 0.00 40.92 4.30
7599 8110 1.153628 CCTTTCGGCGATCTTCCGT 60.154 57.895 11.76 0.00 46.49 4.69
7600 8111 1.421410 CCTTTCGGCGATCTTCCGTG 61.421 60.000 11.76 11.97 46.49 4.94
7601 8112 1.421410 CTTTCGGCGATCTTCCGTGG 61.421 60.000 11.76 9.41 46.49 4.94
7602 8113 4.508128 TCGGCGATCTTCCGTGGC 62.508 66.667 18.61 1.24 46.49 5.01
7606 8117 4.812476 CGATCTTCCGTGGCGCCA 62.812 66.667 29.03 29.03 0.00 5.69
7607 8118 2.892425 GATCTTCCGTGGCGCCAG 60.892 66.667 33.73 23.16 0.00 4.85
7621 8132 3.365265 CCAGCCGTGCCTGGTTTC 61.365 66.667 0.00 0.00 45.87 2.78
7622 8133 3.726517 CAGCCGTGCCTGGTTTCG 61.727 66.667 0.00 0.00 0.00 3.46
7623 8134 4.250305 AGCCGTGCCTGGTTTCGT 62.250 61.111 0.00 0.00 0.00 3.85
7624 8135 3.284449 GCCGTGCCTGGTTTCGTT 61.284 61.111 0.00 0.00 0.00 3.85
7625 8136 2.943653 CCGTGCCTGGTTTCGTTC 59.056 61.111 0.00 0.00 0.00 3.95
7626 8137 1.597027 CCGTGCCTGGTTTCGTTCT 60.597 57.895 0.00 0.00 0.00 3.01
7627 8138 1.164041 CCGTGCCTGGTTTCGTTCTT 61.164 55.000 0.00 0.00 0.00 2.52
7628 8139 0.234884 CGTGCCTGGTTTCGTTCTTC 59.765 55.000 0.00 0.00 0.00 2.87
7629 8140 1.594331 GTGCCTGGTTTCGTTCTTCT 58.406 50.000 0.00 0.00 0.00 2.85
7630 8141 1.264288 GTGCCTGGTTTCGTTCTTCTG 59.736 52.381 0.00 0.00 0.00 3.02
7631 8142 1.140052 TGCCTGGTTTCGTTCTTCTGA 59.860 47.619 0.00 0.00 0.00 3.27
7632 8143 1.801178 GCCTGGTTTCGTTCTTCTGAG 59.199 52.381 0.00 0.00 0.00 3.35
7633 8144 2.807108 GCCTGGTTTCGTTCTTCTGAGT 60.807 50.000 0.00 0.00 0.00 3.41
7634 8145 3.467803 CCTGGTTTCGTTCTTCTGAGTT 58.532 45.455 0.00 0.00 0.00 3.01
7635 8146 3.877508 CCTGGTTTCGTTCTTCTGAGTTT 59.122 43.478 0.00 0.00 0.00 2.66
7636 8147 4.335594 CCTGGTTTCGTTCTTCTGAGTTTT 59.664 41.667 0.00 0.00 0.00 2.43
7637 8148 5.163652 CCTGGTTTCGTTCTTCTGAGTTTTT 60.164 40.000 0.00 0.00 0.00 1.94
7638 8149 5.875930 TGGTTTCGTTCTTCTGAGTTTTTC 58.124 37.500 0.00 0.00 0.00 2.29
7639 8150 4.962151 GGTTTCGTTCTTCTGAGTTTTTCG 59.038 41.667 0.00 0.00 0.00 3.46
7640 8151 5.446875 GGTTTCGTTCTTCTGAGTTTTTCGT 60.447 40.000 0.00 0.00 0.00 3.85
7641 8152 5.385396 TTCGTTCTTCTGAGTTTTTCGTC 57.615 39.130 0.00 0.00 0.00 4.20
7642 8153 4.426416 TCGTTCTTCTGAGTTTTTCGTCA 58.574 39.130 0.00 0.00 0.00 4.35
7643 8154 4.503007 TCGTTCTTCTGAGTTTTTCGTCAG 59.497 41.667 0.00 0.00 41.44 3.51
7644 8155 4.503007 CGTTCTTCTGAGTTTTTCGTCAGA 59.497 41.667 0.00 0.00 45.94 3.27
7649 8160 3.987868 TCTGAGTTTTTCGTCAGAATCGG 59.012 43.478 0.00 0.00 44.92 4.18
7650 8161 3.985008 TGAGTTTTTCGTCAGAATCGGA 58.015 40.909 0.00 0.00 36.09 4.55
7651 8162 3.987868 TGAGTTTTTCGTCAGAATCGGAG 59.012 43.478 0.00 0.00 36.09 4.63
7652 8163 2.737252 AGTTTTTCGTCAGAATCGGAGC 59.263 45.455 0.00 0.00 36.09 4.70
7653 8164 2.737252 GTTTTTCGTCAGAATCGGAGCT 59.263 45.455 0.00 0.00 36.09 4.09
7654 8165 1.996292 TTTCGTCAGAATCGGAGCTG 58.004 50.000 0.00 4.74 36.09 4.24
7655 8166 0.458543 TTCGTCAGAATCGGAGCTGC 60.459 55.000 0.00 0.00 32.27 5.25
7656 8167 2.226896 CGTCAGAATCGGAGCTGCG 61.227 63.158 22.84 22.84 32.27 5.18
7657 8168 1.153745 GTCAGAATCGGAGCTGCGT 60.154 57.895 27.20 9.24 32.27 5.24
7658 8169 0.737715 GTCAGAATCGGAGCTGCGTT 60.738 55.000 27.20 19.52 32.27 4.84
7659 8170 0.737367 TCAGAATCGGAGCTGCGTTG 60.737 55.000 27.20 19.41 32.27 4.10
7660 8171 1.016130 CAGAATCGGAGCTGCGTTGT 61.016 55.000 27.20 15.68 0.00 3.32
7661 8172 0.737715 AGAATCGGAGCTGCGTTGTC 60.738 55.000 27.20 20.57 0.00 3.18
7662 8173 0.737715 GAATCGGAGCTGCGTTGTCT 60.738 55.000 27.20 4.21 0.00 3.41
7663 8174 1.016130 AATCGGAGCTGCGTTGTCTG 61.016 55.000 27.20 0.00 0.00 3.51
7664 8175 2.159819 ATCGGAGCTGCGTTGTCTGT 62.160 55.000 27.20 3.48 0.00 3.41
7665 8176 2.375766 CGGAGCTGCGTTGTCTGTC 61.376 63.158 20.53 0.00 0.00 3.51
7666 8177 2.029844 GGAGCTGCGTTGTCTGTCC 61.030 63.158 0.00 0.00 0.00 4.02
7667 8178 2.356313 AGCTGCGTTGTCTGTCCG 60.356 61.111 0.00 0.00 0.00 4.79
7683 8194 3.553437 CCGCAGGTCGACAAGTCGT 62.553 63.158 18.91 0.65 46.98 4.34
7692 8203 1.350193 CGACAAGTCGTTGATGAGGG 58.650 55.000 14.03 0.00 46.99 4.30
7693 8204 1.336887 CGACAAGTCGTTGATGAGGGT 60.337 52.381 14.03 0.00 46.99 4.34
7694 8205 2.069273 GACAAGTCGTTGATGAGGGTG 58.931 52.381 0.00 0.00 37.10 4.61
7695 8206 1.270839 ACAAGTCGTTGATGAGGGTGG 60.271 52.381 0.00 0.00 37.10 4.61
7696 8207 0.324943 AAGTCGTTGATGAGGGTGGG 59.675 55.000 0.00 0.00 0.00 4.61
7697 8208 1.745489 GTCGTTGATGAGGGTGGGC 60.745 63.158 0.00 0.00 0.00 5.36
7698 8209 1.918293 TCGTTGATGAGGGTGGGCT 60.918 57.895 0.00 0.00 0.00 5.19
7699 8210 1.002134 CGTTGATGAGGGTGGGCTT 60.002 57.895 0.00 0.00 0.00 4.35
7700 8211 0.609131 CGTTGATGAGGGTGGGCTTT 60.609 55.000 0.00 0.00 0.00 3.51
7701 8212 0.890683 GTTGATGAGGGTGGGCTTTG 59.109 55.000 0.00 0.00 0.00 2.77
7702 8213 0.899717 TTGATGAGGGTGGGCTTTGC 60.900 55.000 0.00 0.00 0.00 3.68
7712 8223 3.537388 GGCTTTGCCCTGTGTGTT 58.463 55.556 0.00 0.00 44.06 3.32
7713 8224 1.822615 GGCTTTGCCCTGTGTGTTT 59.177 52.632 0.00 0.00 44.06 2.83
7714 8225 0.249447 GGCTTTGCCCTGTGTGTTTC 60.249 55.000 0.00 0.00 44.06 2.78
7715 8226 0.459489 GCTTTGCCCTGTGTGTTTCA 59.541 50.000 0.00 0.00 0.00 2.69
7716 8227 1.536709 GCTTTGCCCTGTGTGTTTCAG 60.537 52.381 0.00 0.00 0.00 3.02
7717 8228 1.750778 CTTTGCCCTGTGTGTTTCAGT 59.249 47.619 0.00 0.00 0.00 3.41
7718 8229 1.846007 TTGCCCTGTGTGTTTCAGTT 58.154 45.000 0.00 0.00 0.00 3.16
7719 8230 1.846007 TGCCCTGTGTGTTTCAGTTT 58.154 45.000 0.00 0.00 0.00 2.66
7720 8231 3.006112 TGCCCTGTGTGTTTCAGTTTA 57.994 42.857 0.00 0.00 0.00 2.01
7721 8232 3.561143 TGCCCTGTGTGTTTCAGTTTAT 58.439 40.909 0.00 0.00 0.00 1.40
7722 8233 3.317711 TGCCCTGTGTGTTTCAGTTTATG 59.682 43.478 0.00 0.00 0.00 1.90
7723 8234 3.305335 GCCCTGTGTGTTTCAGTTTATGG 60.305 47.826 0.00 0.00 0.00 2.74
7724 8235 3.255642 CCCTGTGTGTTTCAGTTTATGGG 59.744 47.826 0.00 0.00 0.00 4.00
7725 8236 4.141287 CCTGTGTGTTTCAGTTTATGGGA 58.859 43.478 0.00 0.00 0.00 4.37
7726 8237 4.216257 CCTGTGTGTTTCAGTTTATGGGAG 59.784 45.833 0.00 0.00 0.00 4.30
7727 8238 4.787551 TGTGTGTTTCAGTTTATGGGAGT 58.212 39.130 0.00 0.00 0.00 3.85
7728 8239 4.578516 TGTGTGTTTCAGTTTATGGGAGTG 59.421 41.667 0.00 0.00 0.00 3.51
7729 8240 4.023193 GTGTGTTTCAGTTTATGGGAGTGG 60.023 45.833 0.00 0.00 0.00 4.00
7730 8241 3.506067 GTGTTTCAGTTTATGGGAGTGGG 59.494 47.826 0.00 0.00 0.00 4.61
7731 8242 2.492088 GTTTCAGTTTATGGGAGTGGGC 59.508 50.000 0.00 0.00 0.00 5.36
7732 8243 1.668826 TCAGTTTATGGGAGTGGGCT 58.331 50.000 0.00 0.00 0.00 5.19
7733 8244 1.992557 TCAGTTTATGGGAGTGGGCTT 59.007 47.619 0.00 0.00 0.00 4.35
7734 8245 2.094675 CAGTTTATGGGAGTGGGCTTG 58.905 52.381 0.00 0.00 0.00 4.01
7735 8246 1.005924 AGTTTATGGGAGTGGGCTTGG 59.994 52.381 0.00 0.00 0.00 3.61
7736 8247 0.324275 TTTATGGGAGTGGGCTTGGC 60.324 55.000 0.00 0.00 0.00 4.52
7748 8259 2.672961 GGCTTGGCCCTTATTGTTTC 57.327 50.000 0.00 0.00 44.06 2.78
7749 8260 1.135112 GGCTTGGCCCTTATTGTTTCG 60.135 52.381 0.00 0.00 44.06 3.46
7750 8261 1.135112 GCTTGGCCCTTATTGTTTCGG 60.135 52.381 0.00 0.00 0.00 4.30
7751 8262 2.167662 CTTGGCCCTTATTGTTTCGGT 58.832 47.619 0.00 0.00 0.00 4.69
7752 8263 2.296073 TGGCCCTTATTGTTTCGGTT 57.704 45.000 0.00 0.00 0.00 4.44
7753 8264 2.599677 TGGCCCTTATTGTTTCGGTTT 58.400 42.857 0.00 0.00 0.00 3.27
7754 8265 2.966516 TGGCCCTTATTGTTTCGGTTTT 59.033 40.909 0.00 0.00 0.00 2.43
7755 8266 3.388350 TGGCCCTTATTGTTTCGGTTTTT 59.612 39.130 0.00 0.00 0.00 1.94
7756 8267 3.743911 GGCCCTTATTGTTTCGGTTTTTG 59.256 43.478 0.00 0.00 0.00 2.44
7757 8268 3.185594 GCCCTTATTGTTTCGGTTTTTGC 59.814 43.478 0.00 0.00 0.00 3.68
7758 8269 3.743911 CCCTTATTGTTTCGGTTTTTGCC 59.256 43.478 0.00 0.00 0.00 4.52
7759 8270 3.743911 CCTTATTGTTTCGGTTTTTGCCC 59.256 43.478 0.00 0.00 0.00 5.36
7760 8271 1.859383 ATTGTTTCGGTTTTTGCCCG 58.141 45.000 0.00 0.00 46.83 6.13
7768 8279 2.535012 GGTTTTTGCCCGATTTTCCA 57.465 45.000 0.00 0.00 0.00 3.53
7769 8280 3.052455 GGTTTTTGCCCGATTTTCCAT 57.948 42.857 0.00 0.00 0.00 3.41
7770 8281 4.195225 GGTTTTTGCCCGATTTTCCATA 57.805 40.909 0.00 0.00 0.00 2.74
7771 8282 4.570930 GGTTTTTGCCCGATTTTCCATAA 58.429 39.130 0.00 0.00 0.00 1.90
7772 8283 5.182487 GGTTTTTGCCCGATTTTCCATAAT 58.818 37.500 0.00 0.00 0.00 1.28
7773 8284 5.645929 GGTTTTTGCCCGATTTTCCATAATT 59.354 36.000 0.00 0.00 0.00 1.40
7774 8285 6.819146 GGTTTTTGCCCGATTTTCCATAATTA 59.181 34.615 0.00 0.00 0.00 1.40
7775 8286 7.334671 GGTTTTTGCCCGATTTTCCATAATTAA 59.665 33.333 0.00 0.00 0.00 1.40
7776 8287 7.835634 TTTTGCCCGATTTTCCATAATTAAC 57.164 32.000 0.00 0.00 0.00 2.01
7777 8288 6.783708 TTGCCCGATTTTCCATAATTAACT 57.216 33.333 0.00 0.00 0.00 2.24
7778 8289 6.142818 TGCCCGATTTTCCATAATTAACTG 57.857 37.500 0.00 0.00 0.00 3.16
7779 8290 5.068460 TGCCCGATTTTCCATAATTAACTGG 59.932 40.000 0.00 0.00 0.00 4.00
7780 8291 5.508994 GCCCGATTTTCCATAATTAACTGGG 60.509 44.000 5.47 0.00 33.13 4.45
7781 8292 5.508994 CCCGATTTTCCATAATTAACTGGGC 60.509 44.000 5.47 0.00 33.13 5.36
7782 8293 5.068460 CCGATTTTCCATAATTAACTGGGCA 59.932 40.000 5.47 0.00 33.13 5.36
7783 8294 6.406400 CCGATTTTCCATAATTAACTGGGCAA 60.406 38.462 5.47 0.63 33.13 4.52
7784 8295 7.209475 CGATTTTCCATAATTAACTGGGCAAT 58.791 34.615 5.47 4.58 33.13 3.56
7785 8296 7.710475 CGATTTTCCATAATTAACTGGGCAATT 59.290 33.333 5.47 0.00 33.13 2.32
7786 8297 8.962884 ATTTTCCATAATTAACTGGGCAATTC 57.037 30.769 5.47 0.00 33.13 2.17
7787 8298 7.732222 TTTCCATAATTAACTGGGCAATTCT 57.268 32.000 5.47 0.00 33.13 2.40
7788 8299 6.959639 TCCATAATTAACTGGGCAATTCTC 57.040 37.500 5.47 0.00 33.13 2.87
7789 8300 6.672593 TCCATAATTAACTGGGCAATTCTCT 58.327 36.000 5.47 0.00 33.13 3.10
7790 8301 7.125391 TCCATAATTAACTGGGCAATTCTCTT 58.875 34.615 5.47 0.00 33.13 2.85
7791 8302 7.285401 TCCATAATTAACTGGGCAATTCTCTTC 59.715 37.037 5.47 0.00 33.13 2.87
7792 8303 7.286316 CCATAATTAACTGGGCAATTCTCTTCT 59.714 37.037 0.00 0.00 0.00 2.85
7793 8304 6.521151 AATTAACTGGGCAATTCTCTTCTG 57.479 37.500 0.00 0.00 0.00 3.02
7794 8305 1.831580 ACTGGGCAATTCTCTTCTGC 58.168 50.000 0.00 0.00 35.28 4.26
7795 8306 1.353694 ACTGGGCAATTCTCTTCTGCT 59.646 47.619 0.00 0.00 36.32 4.24
7796 8307 2.224967 ACTGGGCAATTCTCTTCTGCTT 60.225 45.455 0.00 0.00 36.32 3.91
7797 8308 2.824341 CTGGGCAATTCTCTTCTGCTTT 59.176 45.455 0.00 0.00 36.32 3.51
7798 8309 4.012374 CTGGGCAATTCTCTTCTGCTTTA 58.988 43.478 0.00 0.00 36.32 1.85
7799 8310 4.603131 TGGGCAATTCTCTTCTGCTTTAT 58.397 39.130 0.00 0.00 36.32 1.40
7800 8311 5.018809 TGGGCAATTCTCTTCTGCTTTATT 58.981 37.500 0.00 0.00 36.32 1.40
7801 8312 6.186957 TGGGCAATTCTCTTCTGCTTTATTA 58.813 36.000 0.00 0.00 36.32 0.98
7802 8313 6.663093 TGGGCAATTCTCTTCTGCTTTATTAA 59.337 34.615 0.00 0.00 36.32 1.40
7803 8314 7.342799 TGGGCAATTCTCTTCTGCTTTATTAAT 59.657 33.333 0.00 0.00 36.32 1.40
7804 8315 8.850156 GGGCAATTCTCTTCTGCTTTATTAATA 58.150 33.333 0.00 0.00 36.32 0.98
7805 8316 9.890352 GGCAATTCTCTTCTGCTTTATTAATAG 57.110 33.333 0.00 0.00 36.32 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.710692 AACTTTTATATTGCTGCAAAGCAC 57.289 33.333 20.06 0.00 45.32 4.40
84 86 8.699749 CCCAATTACAATCGTTTCTTTTCTTTC 58.300 33.333 0.00 0.00 0.00 2.62
296 305 1.251527 GCACCTGACGAGGAAGAGGA 61.252 60.000 0.00 0.00 42.93 3.71
298 307 1.153939 CGCACCTGACGAGGAAGAG 60.154 63.158 0.00 0.00 42.93 2.85
299 308 1.863662 GACGCACCTGACGAGGAAGA 61.864 60.000 0.00 0.00 42.93 2.87
300 309 1.444553 GACGCACCTGACGAGGAAG 60.445 63.158 0.00 0.00 42.93 3.46
301 310 2.649034 GACGCACCTGACGAGGAA 59.351 61.111 0.00 0.00 42.93 3.36
302 311 3.371063 GGACGCACCTGACGAGGA 61.371 66.667 0.00 0.00 42.93 3.71
307 316 1.079750 GAAGAGGGACGCACCTGAC 60.080 63.158 2.85 0.00 42.10 3.51
317 326 1.392534 GGAGAGGTGGGAAGAGGGA 59.607 63.158 0.00 0.00 0.00 4.20
319 328 1.690985 GGGGAGAGGTGGGAAGAGG 60.691 68.421 0.00 0.00 0.00 3.69
526 544 3.008813 GGCTCTGGATGGACATGATGTAT 59.991 47.826 0.00 0.00 0.00 2.29
574 593 0.914417 ATTCAGGCGGAAGGGGAAGA 60.914 55.000 6.20 0.00 39.30 2.87
580 599 0.745845 CACAGGATTCAGGCGGAAGG 60.746 60.000 6.20 0.00 39.30 3.46
661 702 2.247358 ACTAAAACACAGGGCAATGGG 58.753 47.619 0.00 0.00 0.00 4.00
714 758 9.817365 CAGTAGCAGCATGTTGTTATAATTATC 57.183 33.333 11.44 0.00 39.31 1.75
1039 1084 8.715998 CATCCCTAAAATAGATCTCGTGAAATG 58.284 37.037 0.00 0.00 0.00 2.32
1222 1267 8.985315 AAAGACTATGCCTCATCAAATTGATA 57.015 30.769 8.29 0.00 34.28 2.15
1236 1281 3.326747 ACGACACAAGAAAGACTATGCC 58.673 45.455 0.00 0.00 0.00 4.40
1255 1300 1.978782 GCGCTGAAAAATTGAGGAACG 59.021 47.619 0.00 0.00 0.00 3.95
1314 1359 6.864165 AGTTCAGTTTTCAACGTTGCTTAAAA 59.136 30.769 23.47 19.95 36.23 1.52
1369 1414 1.200716 CATGTGTGCCTTTGCGAGATT 59.799 47.619 0.00 0.00 41.78 2.40
1694 1745 2.809665 GCCACTGGCCTCAGATAAGATG 60.810 54.545 9.13 0.00 44.06 2.90
1763 1837 6.420008 GGCAATGTAGAGGTTAGTTATGTACG 59.580 42.308 0.00 0.00 0.00 3.67
1895 1969 4.439305 TGATAAACAAGCAAGATGCCAC 57.561 40.909 0.00 0.00 46.52 5.01
2037 2116 7.973048 ACACTGATAAAGTACCCATCTAGAA 57.027 36.000 0.00 0.00 36.83 2.10
2069 2148 5.253330 TGGAATGAAGGGAGTATTGTTGAC 58.747 41.667 0.00 0.00 0.00 3.18
2232 2377 7.501225 CCTCCGTTCCAAAATACAAGGTATATT 59.499 37.037 0.00 0.00 0.00 1.28
2259 2405 0.317160 TCTGTACTTCCGGCACACTG 59.683 55.000 0.00 0.00 0.00 3.66
2463 2609 6.946340 TCCAAGAATATGCTCAGAGTTAACA 58.054 36.000 8.61 0.00 0.00 2.41
2675 2822 4.023707 GGAATCCGAGCAACAAATATCCTG 60.024 45.833 0.00 0.00 0.00 3.86
2906 3054 1.873591 ACAAAACGAGATGACAGCACC 59.126 47.619 0.00 0.00 0.00 5.01
2919 3067 9.872757 AGTAAATACACTAACATGAACAAAACG 57.127 29.630 0.00 0.00 0.00 3.60
3223 3378 7.031226 TGAAATATGTCCTAAAGATGCTTGC 57.969 36.000 0.00 0.00 0.00 4.01
3311 3466 2.064762 TGCAGCAACAACAACAACAAC 58.935 42.857 0.00 0.00 0.00 3.32
3325 3480 6.710295 CCATAGTATAACAGGTTTATGCAGCA 59.290 38.462 0.00 0.00 0.00 4.41
3326 3481 6.710744 ACCATAGTATAACAGGTTTATGCAGC 59.289 38.462 0.00 0.00 0.00 5.25
3327 3482 7.931407 TGACCATAGTATAACAGGTTTATGCAG 59.069 37.037 0.00 0.00 31.57 4.41
3376 3531 6.826231 TCTTGTCAGGTGTTCAAAACTAATCA 59.174 34.615 0.00 0.00 0.00 2.57
3588 3743 1.460504 TCACAGGTGTCTAGCGGTAG 58.539 55.000 15.51 15.51 31.58 3.18
3754 3910 4.459390 TCATGGAATGGTTGCATCAAAG 57.541 40.909 0.00 0.00 46.73 2.77
3853 4009 1.081892 CCAGTTCCTGCACGAGATTG 58.918 55.000 0.00 0.00 0.00 2.67
3854 4010 0.036010 CCCAGTTCCTGCACGAGATT 60.036 55.000 0.00 0.00 0.00 2.40
3965 4122 7.923414 ATTTAGTTCAATCTGACCTACCAAC 57.077 36.000 0.00 0.00 0.00 3.77
4048 4206 6.098695 CCCCTGATCCAAATTAATTGACACAT 59.901 38.462 0.39 0.00 41.85 3.21
4104 4262 6.677781 TGCTATAGTACAAAGGCAATGTTC 57.322 37.500 0.84 0.00 32.27 3.18
4516 4679 0.454957 GCATGACATTGTCCACGCAC 60.455 55.000 14.05 0.00 0.00 5.34
4642 4805 9.277783 GTATTAGAGATGGAGCACACAAAATAT 57.722 33.333 0.00 0.00 0.00 1.28
4711 4874 6.193504 TCCTTCCTACTTCCTAGACTAAACC 58.806 44.000 0.00 0.00 0.00 3.27
4741 4904 0.405585 CAGGACCAGTTCAACCCCAT 59.594 55.000 0.00 0.00 0.00 4.00
4798 4961 3.557054 CCACTTTGCAAGCACTAGGAGTA 60.557 47.826 0.00 0.00 0.00 2.59
4799 4962 2.498167 CACTTTGCAAGCACTAGGAGT 58.502 47.619 0.00 0.00 0.00 3.85
4802 4967 1.267806 CACCACTTTGCAAGCACTAGG 59.732 52.381 0.00 0.24 0.00 3.02
4833 4998 1.637724 AACCCGGACCAGTTCAACCA 61.638 55.000 0.73 0.00 0.00 3.67
4930 5095 4.387598 TCAAAGTTGCATTTTGGGGATTG 58.612 39.130 18.57 3.28 36.44 2.67
4931 5096 4.703379 TCAAAGTTGCATTTTGGGGATT 57.297 36.364 18.57 0.00 36.44 3.01
5632 5833 6.815089 TCTTTTGAGCAATTATTGTGGTTGT 58.185 32.000 6.81 0.00 0.00 3.32
5633 5834 7.342318 CTCTTTTGAGCAATTATTGTGGTTG 57.658 36.000 6.81 0.00 39.99 3.77
5653 5854 4.136796 TGTGCAGTATTCAAACAGCTCTT 58.863 39.130 0.00 0.00 33.43 2.85
5744 5946 0.320771 CACCAGTGTGAGGCTACCAC 60.321 60.000 7.71 7.71 45.76 4.16
5777 5979 5.367945 AGGAGGGAAAGCAATATCGTAAA 57.632 39.130 0.00 0.00 0.00 2.01
6048 6250 2.208872 ACAGGGGGCTCATTCAAGTAT 58.791 47.619 0.00 0.00 0.00 2.12
6087 6289 3.981071 TCTTGTGGGAGTCTACCAATG 57.019 47.619 4.98 0.00 40.24 2.82
6215 6418 5.277828 GCACTAGGGTTTGTAAGTTGTCAAG 60.278 44.000 0.00 0.00 0.00 3.02
6322 6525 5.534654 TCCCAAAATTTCATGACTTCTTCGT 59.465 36.000 0.00 0.00 0.00 3.85
6371 6574 2.350134 CAGGCTGAGCTGAGGCAA 59.650 61.111 27.56 0.00 40.98 4.52
6404 6607 5.704515 AGGCAGATCAATGAATTAATCTCCG 59.295 40.000 0.00 0.00 0.00 4.63
6495 6698 0.679960 GCCCAGGTGGTTCCATGTAC 60.680 60.000 0.00 0.00 39.02 2.90
6626 6829 6.142817 CCTATGCCGCTTCACAAAAATATAC 58.857 40.000 0.00 0.00 0.00 1.47
6710 6913 7.147976 GTGAGAAAGATTTGTTAGCCAATGTT 58.852 34.615 0.00 0.00 31.81 2.71
6790 6993 0.382515 CTCAGTAGGGTCTGTAGCGC 59.617 60.000 0.00 0.00 36.85 5.92
7128 7383 1.597663 CCTTGGCTAGCCGAATTTACG 59.402 52.381 28.28 13.36 39.42 3.18
7185 7441 2.063266 CTGGCAACACATGTGCATTTC 58.937 47.619 25.68 11.94 46.17 2.17
7211 7467 1.009078 CCTTCGATTCAGCGATTGCA 58.991 50.000 7.90 0.00 46.23 4.08
7218 7474 5.030936 GTCAAATTTAGCCTTCGATTCAGC 58.969 41.667 0.00 0.00 0.00 4.26
7226 7482 5.392487 GCAGGAGAAGTCAAATTTAGCCTTC 60.392 44.000 12.38 12.38 33.40 3.46
7238 7494 1.664649 CGCGTTGCAGGAGAAGTCA 60.665 57.895 0.00 0.00 0.00 3.41
7342 7619 5.180680 CGTTTCTACTACCTTCTTTTTGGGG 59.819 44.000 0.00 0.00 0.00 4.96
7358 7635 6.017325 CCGTTTGGCTAAAATACGTTTCTAC 58.983 40.000 0.00 0.00 0.00 2.59
7360 7637 4.516321 ACCGTTTGGCTAAAATACGTTTCT 59.484 37.500 0.00 0.00 39.70 2.52
7368 7645 7.379750 TGCTTATTTTACCGTTTGGCTAAAAT 58.620 30.769 0.00 13.74 40.50 1.82
7426 7937 0.319040 CATCGCTCCCACCATCGTAG 60.319 60.000 0.00 0.00 0.00 3.51
7430 7941 1.592669 CGACATCGCTCCCACCATC 60.593 63.158 0.00 0.00 0.00 3.51
7434 7945 2.509336 CACCGACATCGCTCCCAC 60.509 66.667 0.00 0.00 38.18 4.61
7435 7946 2.678580 TCACCGACATCGCTCCCA 60.679 61.111 0.00 0.00 38.18 4.37
7436 7947 2.202756 GTCACCGACATCGCTCCC 60.203 66.667 0.00 0.00 38.18 4.30
7437 7948 2.579787 CGTCACCGACATCGCTCC 60.580 66.667 0.00 0.00 38.18 4.70
7438 7949 3.248171 GCGTCACCGACATCGCTC 61.248 66.667 0.00 0.00 44.28 5.03
7443 7954 3.950794 ATTGCCGCGTCACCGACAT 62.951 57.895 4.92 0.00 35.63 3.06
7444 7955 4.673298 ATTGCCGCGTCACCGACA 62.673 61.111 4.92 0.00 35.63 4.35
7445 7956 4.147322 CATTGCCGCGTCACCGAC 62.147 66.667 4.92 0.00 35.63 4.79
7448 7959 3.361977 AACCATTGCCGCGTCACC 61.362 61.111 4.92 0.00 0.00 4.02
7449 7960 2.126888 CAACCATTGCCGCGTCAC 60.127 61.111 4.92 0.00 0.00 3.67
7458 7969 0.304705 GCCGACTATCGCAACCATTG 59.695 55.000 0.00 0.00 38.82 2.82
7459 7970 0.178068 AGCCGACTATCGCAACCATT 59.822 50.000 0.00 0.00 38.82 3.16
7460 7971 0.249489 GAGCCGACTATCGCAACCAT 60.249 55.000 0.00 0.00 38.82 3.55
7461 7972 1.141019 GAGCCGACTATCGCAACCA 59.859 57.895 0.00 0.00 38.82 3.67
7462 7973 0.179108 AAGAGCCGACTATCGCAACC 60.179 55.000 0.00 0.00 38.82 3.77
7463 7974 1.201343 GAAGAGCCGACTATCGCAAC 58.799 55.000 0.00 0.00 38.82 4.17
7464 7975 1.065701 GAGAAGAGCCGACTATCGCAA 59.934 52.381 0.00 0.00 38.82 4.85
7465 7976 0.663688 GAGAAGAGCCGACTATCGCA 59.336 55.000 0.00 0.00 38.82 5.10
7466 7977 0.039888 GGAGAAGAGCCGACTATCGC 60.040 60.000 0.00 0.00 38.82 4.58
7475 7986 3.991536 GACACGCCGGAGAAGAGCC 62.992 68.421 13.83 0.00 0.00 4.70
7476 7987 2.507324 GACACGCCGGAGAAGAGC 60.507 66.667 13.83 0.00 0.00 4.09
7477 7988 2.182030 GGACACGCCGGAGAAGAG 59.818 66.667 13.83 0.99 0.00 2.85
7478 7989 2.599281 TGGACACGCCGGAGAAGA 60.599 61.111 13.83 0.00 40.66 2.87
7479 7990 2.432628 GTGGACACGCCGGAGAAG 60.433 66.667 13.83 6.52 40.66 2.85
7489 8000 1.082117 CGAGGCAATACCGTGGACAC 61.082 60.000 0.00 0.00 46.52 3.67
7490 8001 1.216977 CGAGGCAATACCGTGGACA 59.783 57.895 0.00 0.00 46.52 4.02
7491 8002 1.520787 CCGAGGCAATACCGTGGAC 60.521 63.158 0.00 0.00 46.52 4.02
7492 8003 1.546589 AACCGAGGCAATACCGTGGA 61.547 55.000 0.00 0.00 46.52 4.02
7493 8004 0.675522 AAACCGAGGCAATACCGTGG 60.676 55.000 0.00 0.00 46.52 4.94
7494 8005 0.446222 CAAACCGAGGCAATACCGTG 59.554 55.000 0.00 0.00 46.52 4.94
7495 8006 0.035739 ACAAACCGAGGCAATACCGT 59.964 50.000 0.00 0.00 46.52 4.83
7496 8007 1.161843 AACAAACCGAGGCAATACCG 58.838 50.000 0.00 0.00 46.52 4.02
7497 8008 2.295070 ACAAACAAACCGAGGCAATACC 59.705 45.455 0.00 0.00 39.61 2.73
7498 8009 3.636282 ACAAACAAACCGAGGCAATAC 57.364 42.857 0.00 0.00 0.00 1.89
7499 8010 3.797184 GCAACAAACAAACCGAGGCAATA 60.797 43.478 0.00 0.00 0.00 1.90
7500 8011 2.820330 CAACAAACAAACCGAGGCAAT 58.180 42.857 0.00 0.00 0.00 3.56
7501 8012 1.737363 GCAACAAACAAACCGAGGCAA 60.737 47.619 0.00 0.00 0.00 4.52
7502 8013 0.179124 GCAACAAACAAACCGAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
7503 8014 0.102300 AGCAACAAACAAACCGAGGC 59.898 50.000 0.00 0.00 0.00 4.70
7504 8015 3.564511 CATAGCAACAAACAAACCGAGG 58.435 45.455 0.00 0.00 0.00 4.63
7505 8016 3.252215 TCCATAGCAACAAACAAACCGAG 59.748 43.478 0.00 0.00 0.00 4.63
7506 8017 3.215151 TCCATAGCAACAAACAAACCGA 58.785 40.909 0.00 0.00 0.00 4.69
7507 8018 3.004315 ACTCCATAGCAACAAACAAACCG 59.996 43.478 0.00 0.00 0.00 4.44
7508 8019 4.546570 GACTCCATAGCAACAAACAAACC 58.453 43.478 0.00 0.00 0.00 3.27
7509 8020 4.024387 TCGACTCCATAGCAACAAACAAAC 60.024 41.667 0.00 0.00 0.00 2.93
7510 8021 4.130857 TCGACTCCATAGCAACAAACAAA 58.869 39.130 0.00 0.00 0.00 2.83
7511 8022 3.734463 TCGACTCCATAGCAACAAACAA 58.266 40.909 0.00 0.00 0.00 2.83
7512 8023 3.394674 TCGACTCCATAGCAACAAACA 57.605 42.857 0.00 0.00 0.00 2.83
7513 8024 3.424962 GCTTCGACTCCATAGCAACAAAC 60.425 47.826 0.00 0.00 33.88 2.93
7514 8025 2.742053 GCTTCGACTCCATAGCAACAAA 59.258 45.455 0.00 0.00 33.88 2.83
7515 8026 2.028112 AGCTTCGACTCCATAGCAACAA 60.028 45.455 7.24 0.00 36.11 2.83
7516 8027 1.550524 AGCTTCGACTCCATAGCAACA 59.449 47.619 7.24 0.00 36.11 3.33
7517 8028 1.929836 CAGCTTCGACTCCATAGCAAC 59.070 52.381 7.24 0.00 36.11 4.17
7518 8029 1.740380 GCAGCTTCGACTCCATAGCAA 60.740 52.381 7.24 0.00 36.11 3.91
7519 8030 0.179100 GCAGCTTCGACTCCATAGCA 60.179 55.000 7.24 0.00 36.11 3.49
7520 8031 1.211818 CGCAGCTTCGACTCCATAGC 61.212 60.000 0.00 0.00 0.00 2.97
7521 8032 0.596083 CCGCAGCTTCGACTCCATAG 60.596 60.000 7.52 0.00 0.00 2.23
7522 8033 1.437573 CCGCAGCTTCGACTCCATA 59.562 57.895 7.52 0.00 0.00 2.74
7523 8034 2.185350 CCGCAGCTTCGACTCCAT 59.815 61.111 7.52 0.00 0.00 3.41
7524 8035 4.742201 GCCGCAGCTTCGACTCCA 62.742 66.667 7.52 0.00 35.50 3.86
7543 8054 3.702048 TACACCACAGGGCCTCGC 61.702 66.667 0.95 0.00 37.90 5.03
7544 8055 2.264794 GTACACCACAGGGCCTCG 59.735 66.667 0.95 1.63 37.90 4.63
7545 8056 1.614241 ATCGTACACCACAGGGCCTC 61.614 60.000 0.95 0.00 37.90 4.70
7546 8057 1.612442 ATCGTACACCACAGGGCCT 60.612 57.895 0.00 0.00 37.90 5.19
7547 8058 1.449601 CATCGTACACCACAGGGCC 60.450 63.158 0.00 0.00 37.90 5.80
7548 8059 0.739813 GTCATCGTACACCACAGGGC 60.740 60.000 0.00 0.00 37.90 5.19
7549 8060 0.895530 AGTCATCGTACACCACAGGG 59.104 55.000 0.00 0.00 41.29 4.45
7550 8061 1.404181 CCAGTCATCGTACACCACAGG 60.404 57.143 0.00 0.00 0.00 4.00
7551 8062 1.996292 CCAGTCATCGTACACCACAG 58.004 55.000 0.00 0.00 0.00 3.66
7552 8063 0.037697 GCCAGTCATCGTACACCACA 60.038 55.000 0.00 0.00 0.00 4.17
7553 8064 0.246635 AGCCAGTCATCGTACACCAC 59.753 55.000 0.00 0.00 0.00 4.16
7554 8065 0.246360 CAGCCAGTCATCGTACACCA 59.754 55.000 0.00 0.00 0.00 4.17
7555 8066 1.084370 GCAGCCAGTCATCGTACACC 61.084 60.000 0.00 0.00 0.00 4.16
7556 8067 0.108615 AGCAGCCAGTCATCGTACAC 60.109 55.000 0.00 0.00 0.00 2.90
7557 8068 0.608130 AAGCAGCCAGTCATCGTACA 59.392 50.000 0.00 0.00 0.00 2.90
7558 8069 1.002366 CAAGCAGCCAGTCATCGTAC 58.998 55.000 0.00 0.00 0.00 3.67
7559 8070 0.608130 ACAAGCAGCCAGTCATCGTA 59.392 50.000 0.00 0.00 0.00 3.43
7560 8071 0.952497 CACAAGCAGCCAGTCATCGT 60.952 55.000 0.00 0.00 0.00 3.73
7561 8072 1.642037 CCACAAGCAGCCAGTCATCG 61.642 60.000 0.00 0.00 0.00 3.84
7562 8073 1.930908 GCCACAAGCAGCCAGTCATC 61.931 60.000 0.00 0.00 42.97 2.92
7563 8074 1.975407 GCCACAAGCAGCCAGTCAT 60.975 57.895 0.00 0.00 42.97 3.06
7564 8075 2.595463 GCCACAAGCAGCCAGTCA 60.595 61.111 0.00 0.00 42.97 3.41
7570 8081 2.256461 CGAAAGGCCACAAGCAGC 59.744 61.111 5.01 0.00 46.50 5.25
7589 8100 4.812476 TGGCGCCACGGAAGATCG 62.812 66.667 29.03 0.00 0.00 3.69
7590 8101 2.892425 CTGGCGCCACGGAAGATC 60.892 66.667 29.03 0.00 0.00 2.75
7604 8115 3.365265 GAAACCAGGCACGGCTGG 61.365 66.667 31.73 31.73 45.70 4.85
7605 8116 3.726517 CGAAACCAGGCACGGCTG 61.727 66.667 13.35 13.35 0.00 4.85
7606 8117 3.767630 AACGAAACCAGGCACGGCT 62.768 57.895 0.00 0.00 0.00 5.52
7607 8118 3.249973 GAACGAAACCAGGCACGGC 62.250 63.158 0.00 0.00 0.00 5.68
7608 8119 1.164041 AAGAACGAAACCAGGCACGG 61.164 55.000 0.00 0.00 0.00 4.94
7609 8120 0.234884 GAAGAACGAAACCAGGCACG 59.765 55.000 0.00 0.00 0.00 5.34
7610 8121 1.264288 CAGAAGAACGAAACCAGGCAC 59.736 52.381 0.00 0.00 0.00 5.01
7611 8122 1.140052 TCAGAAGAACGAAACCAGGCA 59.860 47.619 0.00 0.00 0.00 4.75
7612 8123 1.801178 CTCAGAAGAACGAAACCAGGC 59.199 52.381 0.00 0.00 0.00 4.85
7613 8124 3.113260 ACTCAGAAGAACGAAACCAGG 57.887 47.619 0.00 0.00 0.00 4.45
7614 8125 5.485662 AAAACTCAGAAGAACGAAACCAG 57.514 39.130 0.00 0.00 0.00 4.00
7615 8126 5.446741 CGAAAAACTCAGAAGAACGAAACCA 60.447 40.000 0.00 0.00 0.00 3.67
7616 8127 4.962151 CGAAAAACTCAGAAGAACGAAACC 59.038 41.667 0.00 0.00 0.00 3.27
7617 8128 5.557388 ACGAAAAACTCAGAAGAACGAAAC 58.443 37.500 0.00 0.00 0.00 2.78
7618 8129 5.349270 TGACGAAAAACTCAGAAGAACGAAA 59.651 36.000 0.00 0.00 0.00 3.46
7619 8130 4.865925 TGACGAAAAACTCAGAAGAACGAA 59.134 37.500 0.00 0.00 0.00 3.85
7620 8131 4.426416 TGACGAAAAACTCAGAAGAACGA 58.574 39.130 0.00 0.00 0.00 3.85
7621 8132 4.503007 TCTGACGAAAAACTCAGAAGAACG 59.497 41.667 0.00 0.00 39.97 3.95
7622 8133 5.968387 TCTGACGAAAAACTCAGAAGAAC 57.032 39.130 0.00 0.00 39.97 3.01
7627 8138 3.987868 CCGATTCTGACGAAAAACTCAGA 59.012 43.478 0.00 0.00 40.95 3.27
7628 8139 3.987868 TCCGATTCTGACGAAAAACTCAG 59.012 43.478 0.00 0.00 36.07 3.35
7629 8140 3.985008 TCCGATTCTGACGAAAAACTCA 58.015 40.909 0.00 0.00 31.91 3.41
7630 8141 3.181529 GCTCCGATTCTGACGAAAAACTC 60.182 47.826 0.00 0.00 31.91 3.01
7631 8142 2.737252 GCTCCGATTCTGACGAAAAACT 59.263 45.455 0.00 0.00 31.91 2.66
7632 8143 2.737252 AGCTCCGATTCTGACGAAAAAC 59.263 45.455 0.00 0.00 31.91 2.43
7633 8144 2.736721 CAGCTCCGATTCTGACGAAAAA 59.263 45.455 0.00 0.00 31.91 1.94
7634 8145 2.337583 CAGCTCCGATTCTGACGAAAA 58.662 47.619 0.00 0.00 31.91 2.29
7635 8146 1.996292 CAGCTCCGATTCTGACGAAA 58.004 50.000 0.00 0.00 31.91 3.46
7636 8147 0.458543 GCAGCTCCGATTCTGACGAA 60.459 55.000 0.00 0.00 32.26 3.85
7637 8148 1.139734 GCAGCTCCGATTCTGACGA 59.860 57.895 0.00 0.00 32.26 4.20
7638 8149 2.226896 CGCAGCTCCGATTCTGACG 61.227 63.158 0.00 0.00 32.26 4.35
7639 8150 0.737715 AACGCAGCTCCGATTCTGAC 60.738 55.000 2.80 0.00 32.26 3.51
7640 8151 0.737367 CAACGCAGCTCCGATTCTGA 60.737 55.000 2.80 0.00 32.26 3.27
7641 8152 1.016130 ACAACGCAGCTCCGATTCTG 61.016 55.000 2.80 0.00 0.00 3.02
7642 8153 0.737715 GACAACGCAGCTCCGATTCT 60.738 55.000 2.80 0.00 0.00 2.40
7643 8154 0.737715 AGACAACGCAGCTCCGATTC 60.738 55.000 2.80 0.00 0.00 2.52
7644 8155 1.016130 CAGACAACGCAGCTCCGATT 61.016 55.000 2.80 0.00 0.00 3.34
7645 8156 1.446792 CAGACAACGCAGCTCCGAT 60.447 57.895 2.80 0.00 0.00 4.18
7646 8157 2.049156 CAGACAACGCAGCTCCGA 60.049 61.111 2.80 0.00 0.00 4.55
7647 8158 2.356313 ACAGACAACGCAGCTCCG 60.356 61.111 0.00 0.00 0.00 4.63
7648 8159 2.029844 GGACAGACAACGCAGCTCC 61.030 63.158 0.00 0.00 0.00 4.70
7649 8160 2.375766 CGGACAGACAACGCAGCTC 61.376 63.158 0.00 0.00 0.00 4.09
7650 8161 2.356313 CGGACAGACAACGCAGCT 60.356 61.111 0.00 0.00 0.00 4.24
7661 8172 1.734477 CTTGTCGACCTGCGGACAG 60.734 63.158 14.12 0.00 44.05 3.51
7662 8173 2.338620 CTTGTCGACCTGCGGACA 59.661 61.111 14.12 0.00 41.33 4.02
7663 8174 1.733399 GACTTGTCGACCTGCGGAC 60.733 63.158 14.12 0.00 41.33 4.79
7664 8175 2.649034 GACTTGTCGACCTGCGGA 59.351 61.111 14.12 0.00 41.33 5.54
7665 8176 2.805353 CGACTTGTCGACCTGCGG 60.805 66.667 17.00 1.15 41.33 5.69
7666 8177 1.660575 AACGACTTGTCGACCTGCG 60.661 57.895 26.65 13.57 42.69 5.18
7667 8178 0.596600 TCAACGACTTGTCGACCTGC 60.597 55.000 26.65 0.00 36.85 4.85
7668 8179 1.721389 CATCAACGACTTGTCGACCTG 59.279 52.381 26.65 19.17 36.85 4.00
7669 8180 1.611977 TCATCAACGACTTGTCGACCT 59.388 47.619 26.65 9.98 36.85 3.85
7670 8181 1.986378 CTCATCAACGACTTGTCGACC 59.014 52.381 26.65 0.00 36.85 4.79
7671 8182 1.986378 CCTCATCAACGACTTGTCGAC 59.014 52.381 26.65 9.11 36.85 4.20
7672 8183 1.067846 CCCTCATCAACGACTTGTCGA 60.068 52.381 26.65 7.72 36.85 4.20
7673 8184 1.336887 ACCCTCATCAACGACTTGTCG 60.337 52.381 19.74 19.74 39.31 4.35
7674 8185 2.069273 CACCCTCATCAACGACTTGTC 58.931 52.381 0.00 0.00 0.00 3.18
7675 8186 1.270839 CCACCCTCATCAACGACTTGT 60.271 52.381 0.00 0.00 0.00 3.16
7676 8187 1.442769 CCACCCTCATCAACGACTTG 58.557 55.000 0.00 0.00 0.00 3.16
7677 8188 0.324943 CCCACCCTCATCAACGACTT 59.675 55.000 0.00 0.00 0.00 3.01
7678 8189 1.983224 CCCACCCTCATCAACGACT 59.017 57.895 0.00 0.00 0.00 4.18
7679 8190 1.745489 GCCCACCCTCATCAACGAC 60.745 63.158 0.00 0.00 0.00 4.34
7680 8191 1.488705 AAGCCCACCCTCATCAACGA 61.489 55.000 0.00 0.00 0.00 3.85
7681 8192 0.609131 AAAGCCCACCCTCATCAACG 60.609 55.000 0.00 0.00 0.00 4.10
7682 8193 0.890683 CAAAGCCCACCCTCATCAAC 59.109 55.000 0.00 0.00 0.00 3.18
7683 8194 0.899717 GCAAAGCCCACCCTCATCAA 60.900 55.000 0.00 0.00 0.00 2.57
7684 8195 1.304381 GCAAAGCCCACCCTCATCA 60.304 57.895 0.00 0.00 0.00 3.07
7685 8196 2.054453 GGCAAAGCCCACCCTCATC 61.054 63.158 0.00 0.00 44.06 2.92
7686 8197 2.037847 GGCAAAGCCCACCCTCAT 59.962 61.111 0.00 0.00 44.06 2.90
7696 8207 0.459489 TGAAACACACAGGGCAAAGC 59.541 50.000 0.00 0.00 0.00 3.51
7697 8208 1.750778 ACTGAAACACACAGGGCAAAG 59.249 47.619 0.00 0.00 39.38 2.77
7698 8209 1.846007 ACTGAAACACACAGGGCAAA 58.154 45.000 0.00 0.00 39.38 3.68
7699 8210 1.846007 AACTGAAACACACAGGGCAA 58.154 45.000 0.00 0.00 39.38 4.52
7700 8211 1.846007 AAACTGAAACACACAGGGCA 58.154 45.000 0.00 0.00 39.38 5.36
7701 8212 3.305335 CCATAAACTGAAACACACAGGGC 60.305 47.826 0.00 0.00 39.38 5.19
7702 8213 3.255642 CCCATAAACTGAAACACACAGGG 59.744 47.826 0.00 0.00 39.38 4.45
7703 8214 4.141287 TCCCATAAACTGAAACACACAGG 58.859 43.478 0.00 0.00 39.38 4.00
7704 8215 4.821805 ACTCCCATAAACTGAAACACACAG 59.178 41.667 0.00 0.00 40.68 3.66
7705 8216 4.578516 CACTCCCATAAACTGAAACACACA 59.421 41.667 0.00 0.00 0.00 3.72
7706 8217 4.023193 CCACTCCCATAAACTGAAACACAC 60.023 45.833 0.00 0.00 0.00 3.82
7707 8218 4.141287 CCACTCCCATAAACTGAAACACA 58.859 43.478 0.00 0.00 0.00 3.72
7708 8219 3.506067 CCCACTCCCATAAACTGAAACAC 59.494 47.826 0.00 0.00 0.00 3.32
7709 8220 3.761897 CCCACTCCCATAAACTGAAACA 58.238 45.455 0.00 0.00 0.00 2.83
7710 8221 2.492088 GCCCACTCCCATAAACTGAAAC 59.508 50.000 0.00 0.00 0.00 2.78
7711 8222 2.378547 AGCCCACTCCCATAAACTGAAA 59.621 45.455 0.00 0.00 0.00 2.69
7712 8223 1.992557 AGCCCACTCCCATAAACTGAA 59.007 47.619 0.00 0.00 0.00 3.02
7713 8224 1.668826 AGCCCACTCCCATAAACTGA 58.331 50.000 0.00 0.00 0.00 3.41
7714 8225 2.094675 CAAGCCCACTCCCATAAACTG 58.905 52.381 0.00 0.00 0.00 3.16
7715 8226 1.005924 CCAAGCCCACTCCCATAAACT 59.994 52.381 0.00 0.00 0.00 2.66
7716 8227 1.474330 CCAAGCCCACTCCCATAAAC 58.526 55.000 0.00 0.00 0.00 2.01
7717 8228 0.324275 GCCAAGCCCACTCCCATAAA 60.324 55.000 0.00 0.00 0.00 1.40
7718 8229 1.306296 GCCAAGCCCACTCCCATAA 59.694 57.895 0.00 0.00 0.00 1.90
7719 8230 2.689691 GGCCAAGCCCACTCCCATA 61.690 63.158 0.00 0.00 44.06 2.74
7720 8231 4.066139 GGCCAAGCCCACTCCCAT 62.066 66.667 0.00 0.00 44.06 4.00
7730 8241 1.135112 CCGAAACAATAAGGGCCAAGC 60.135 52.381 6.18 0.00 0.00 4.01
7731 8242 2.167662 ACCGAAACAATAAGGGCCAAG 58.832 47.619 6.18 0.00 0.00 3.61
7732 8243 2.296073 ACCGAAACAATAAGGGCCAA 57.704 45.000 6.18 0.00 0.00 4.52
7733 8244 2.296073 AACCGAAACAATAAGGGCCA 57.704 45.000 6.18 0.00 0.00 5.36
7734 8245 3.671008 AAAACCGAAACAATAAGGGCC 57.329 42.857 0.00 0.00 0.00 5.80
7735 8246 3.185594 GCAAAAACCGAAACAATAAGGGC 59.814 43.478 0.00 0.00 0.00 5.19
7736 8247 3.743911 GGCAAAAACCGAAACAATAAGGG 59.256 43.478 0.00 0.00 0.00 3.95
7737 8248 3.743911 GGGCAAAAACCGAAACAATAAGG 59.256 43.478 0.00 0.00 0.00 2.69
7738 8249 4.983215 GGGCAAAAACCGAAACAATAAG 57.017 40.909 0.00 0.00 0.00 1.73
7749 8260 2.535012 TGGAAAATCGGGCAAAAACC 57.465 45.000 0.00 0.00 0.00 3.27
7750 8261 6.735678 AATTATGGAAAATCGGGCAAAAAC 57.264 33.333 0.00 0.00 0.00 2.43
7751 8262 8.097662 AGTTAATTATGGAAAATCGGGCAAAAA 58.902 29.630 0.00 0.00 0.00 1.94
7752 8263 7.547370 CAGTTAATTATGGAAAATCGGGCAAAA 59.453 33.333 0.00 0.00 0.00 2.44
7753 8264 7.038659 CAGTTAATTATGGAAAATCGGGCAAA 58.961 34.615 0.00 0.00 0.00 3.68
7754 8265 6.406400 CCAGTTAATTATGGAAAATCGGGCAA 60.406 38.462 0.00 0.00 39.02 4.52
7755 8266 5.068460 CCAGTTAATTATGGAAAATCGGGCA 59.932 40.000 0.00 0.00 39.02 5.36
7756 8267 5.508994 CCCAGTTAATTATGGAAAATCGGGC 60.509 44.000 6.67 0.00 39.02 6.13
7757 8268 5.508994 GCCCAGTTAATTATGGAAAATCGGG 60.509 44.000 6.67 0.00 39.02 5.14
7758 8269 5.068460 TGCCCAGTTAATTATGGAAAATCGG 59.932 40.000 6.67 0.00 39.02 4.18
7759 8270 6.142818 TGCCCAGTTAATTATGGAAAATCG 57.857 37.500 6.67 0.00 39.02 3.34
7760 8271 8.962884 AATTGCCCAGTTAATTATGGAAAATC 57.037 30.769 6.67 0.00 39.02 2.17
7761 8272 8.771286 AGAATTGCCCAGTTAATTATGGAAAAT 58.229 29.630 6.67 3.96 39.02 1.82
7762 8273 8.144862 AGAATTGCCCAGTTAATTATGGAAAA 57.855 30.769 6.67 2.10 39.02 2.29
7763 8274 7.619302 AGAGAATTGCCCAGTTAATTATGGAAA 59.381 33.333 6.67 2.39 39.02 3.13
7764 8275 7.125391 AGAGAATTGCCCAGTTAATTATGGAA 58.875 34.615 6.67 0.00 39.02 3.53
7765 8276 6.672593 AGAGAATTGCCCAGTTAATTATGGA 58.327 36.000 6.67 0.00 39.02 3.41
7766 8277 6.966534 AGAGAATTGCCCAGTTAATTATGG 57.033 37.500 0.00 0.00 36.27 2.74
7767 8278 8.133627 CAGAAGAGAATTGCCCAGTTAATTATG 58.866 37.037 0.00 0.00 0.00 1.90
7768 8279 7.201857 GCAGAAGAGAATTGCCCAGTTAATTAT 60.202 37.037 0.00 0.00 31.79 1.28
7769 8280 6.095440 GCAGAAGAGAATTGCCCAGTTAATTA 59.905 38.462 0.00 0.00 31.79 1.40
7770 8281 5.105595 GCAGAAGAGAATTGCCCAGTTAATT 60.106 40.000 0.00 0.00 31.79 1.40
7771 8282 4.400567 GCAGAAGAGAATTGCCCAGTTAAT 59.599 41.667 0.00 0.00 31.79 1.40
7772 8283 3.758554 GCAGAAGAGAATTGCCCAGTTAA 59.241 43.478 0.00 0.00 31.79 2.01
7773 8284 3.009473 AGCAGAAGAGAATTGCCCAGTTA 59.991 43.478 0.00 0.00 38.58 2.24
7774 8285 2.165998 GCAGAAGAGAATTGCCCAGTT 58.834 47.619 0.00 0.00 31.79 3.16
7775 8286 1.353694 AGCAGAAGAGAATTGCCCAGT 59.646 47.619 0.00 0.00 38.58 4.00
7776 8287 2.125773 AGCAGAAGAGAATTGCCCAG 57.874 50.000 0.00 0.00 38.58 4.45
7777 8288 2.592102 AAGCAGAAGAGAATTGCCCA 57.408 45.000 0.00 0.00 38.58 5.36
7778 8289 5.588958 AATAAAGCAGAAGAGAATTGCCC 57.411 39.130 0.00 0.00 38.58 5.36
7779 8290 9.890352 CTATTAATAAAGCAGAAGAGAATTGCC 57.110 33.333 0.00 0.00 38.58 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.