Multiple sequence alignment - TraesCS1B01G249100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G249100 chr1B 100.000 4828 0 0 1 4828 441627367 441632194 0.000000e+00 8916
1 TraesCS1B01G249100 chr1B 82.443 524 64 17 1 507 589983498 589982986 2.670000e-117 433
2 TraesCS1B01G249100 chr1B 94.545 110 6 0 4719 4828 441637811 441637920 2.310000e-38 171
3 TraesCS1B01G249100 chr1D 88.592 3366 261 48 572 3864 326964254 326967569 0.000000e+00 3975
4 TraesCS1B01G249100 chr1D 89.819 884 65 5 3852 4719 326967961 326968835 0.000000e+00 1110
5 TraesCS1B01G249100 chr1D 81.273 550 85 8 2 535 486900179 486899632 3.450000e-116 429
6 TraesCS1B01G249100 chr1A 89.795 2489 178 32 2282 4719 409837476 409835013 0.000000e+00 3120
7 TraesCS1B01G249100 chr1A 88.222 1715 138 29 593 2254 409839171 409837468 0.000000e+00 1989
8 TraesCS1B01G249100 chr6A 85.872 545 72 5 1 541 555106403 555105860 4.190000e-160 575
9 TraesCS1B01G249100 chr7D 85.158 539 76 4 6 541 39715331 39715868 2.540000e-152 549
10 TraesCS1B01G249100 chr7D 83.859 539 83 4 6 541 39731373 39731910 1.200000e-140 510
11 TraesCS1B01G249100 chr7D 84.173 139 20 2 573 710 37673028 37673165 3.030000e-27 134
12 TraesCS1B01G249100 chr3D 83.514 552 77 11 1 541 588494506 588495054 2.010000e-138 503
13 TraesCS1B01G249100 chr4D 81.703 552 81 12 1 542 349582729 349582188 4.430000e-120 442
14 TraesCS1B01G249100 chr4D 79.888 179 30 5 572 746 78672757 78672933 5.070000e-25 126
15 TraesCS1B01G249100 chr4D 76.824 233 42 9 572 794 276141701 276141931 2.360000e-23 121
16 TraesCS1B01G249100 chr6B 82.306 503 85 4 42 541 476334562 476335063 2.670000e-117 433
17 TraesCS1B01G249100 chr6B 79.646 565 84 10 1 542 121521897 121521341 1.270000e-100 377
18 TraesCS1B01G249100 chr6D 80.832 553 86 11 1 541 303199126 303199670 2.690000e-112 416
19 TraesCS1B01G249100 chr7B 79.783 554 94 11 1 542 59623703 59623156 2.110000e-103 387
20 TraesCS1B01G249100 chr5A 86.603 209 26 2 335 542 393530528 393530735 3.760000e-56 230
21 TraesCS1B01G249100 chr4B 83.523 176 22 4 576 746 665321511 665321684 1.800000e-34 158
22 TraesCS1B01G249100 chr4B 79.459 185 28 6 574 754 473587170 473587348 6.560000e-24 122
23 TraesCS1B01G249100 chrUn 81.152 191 24 9 574 754 32936537 32936349 5.040000e-30 143
24 TraesCS1B01G249100 chr5D 80.791 177 26 7 576 746 90925904 90925730 1.090000e-26 132
25 TraesCS1B01G249100 chr2A 79.558 181 30 4 572 746 763517549 763517370 6.560000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G249100 chr1B 441627367 441632194 4827 False 8916.0 8916 100.0000 1 4828 1 chr1B.!!$F1 4827
1 TraesCS1B01G249100 chr1B 589982986 589983498 512 True 433.0 433 82.4430 1 507 1 chr1B.!!$R1 506
2 TraesCS1B01G249100 chr1D 326964254 326968835 4581 False 2542.5 3975 89.2055 572 4719 2 chr1D.!!$F1 4147
3 TraesCS1B01G249100 chr1D 486899632 486900179 547 True 429.0 429 81.2730 2 535 1 chr1D.!!$R1 533
4 TraesCS1B01G249100 chr1A 409835013 409839171 4158 True 2554.5 3120 89.0085 593 4719 2 chr1A.!!$R1 4126
5 TraesCS1B01G249100 chr6A 555105860 555106403 543 True 575.0 575 85.8720 1 541 1 chr6A.!!$R1 540
6 TraesCS1B01G249100 chr7D 39715331 39715868 537 False 549.0 549 85.1580 6 541 1 chr7D.!!$F2 535
7 TraesCS1B01G249100 chr7D 39731373 39731910 537 False 510.0 510 83.8590 6 541 1 chr7D.!!$F3 535
8 TraesCS1B01G249100 chr3D 588494506 588495054 548 False 503.0 503 83.5140 1 541 1 chr3D.!!$F1 540
9 TraesCS1B01G249100 chr4D 349582188 349582729 541 True 442.0 442 81.7030 1 542 1 chr4D.!!$R1 541
10 TraesCS1B01G249100 chr6B 476334562 476335063 501 False 433.0 433 82.3060 42 541 1 chr6B.!!$F1 499
11 TraesCS1B01G249100 chr6B 121521341 121521897 556 True 377.0 377 79.6460 1 542 1 chr6B.!!$R1 541
12 TraesCS1B01G249100 chr6D 303199126 303199670 544 False 416.0 416 80.8320 1 541 1 chr6D.!!$F1 540
13 TraesCS1B01G249100 chr7B 59623156 59623703 547 True 387.0 387 79.7830 1 542 1 chr7B.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.329596 AGGCTTCATGGTGACCTTCC 59.670 55.0 2.11 0.0 0.0 3.46 F
1329 1404 0.039437 ACGACCACTAGCACAGAACG 60.039 55.0 0.00 0.0 0.0 3.95 F
2096 2197 0.038526 TTCGCTTCAGAGGTCGGTTC 60.039 55.0 0.00 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1982 0.251354 TAGCCTCTTCAGCCTGCAAG 59.749 55.000 0.0 0.0 0.00 4.01 R
2765 2885 1.341209 TCAGAACATGCACACGAGTCT 59.659 47.619 0.0 0.0 0.00 3.24 R
4006 4564 0.179073 AGCATCTGCATCCGGTACAC 60.179 55.000 0.0 0.0 45.16 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.329596 AGGCTTCATGGTGACCTTCC 59.670 55.000 2.11 0.00 0.00 3.46
88 89 5.505286 GTCTTCAATGACGATGGCATTAAG 58.495 41.667 0.00 0.00 34.41 1.85
154 163 1.134220 GCCTGGGACAATCCATCGTAA 60.134 52.381 0.00 0.00 38.64 3.18
224 236 6.602803 TGAACTGATATGTTTATGTGTGGCAT 59.397 34.615 0.00 0.00 41.42 4.40
271 302 4.038763 TCTCTTGTGTGTTATTCCTGACGT 59.961 41.667 0.00 0.00 0.00 4.34
293 324 2.677902 CGATGTGTGCTGGTAACCTCAT 60.678 50.000 0.00 0.00 0.00 2.90
296 327 2.305635 TGTGTGCTGGTAACCTCATCAT 59.694 45.455 0.00 0.00 0.00 2.45
312 343 5.826737 CCTCATCATAGCATCAAAGAGGTTT 59.173 40.000 0.00 0.00 37.28 3.27
365 396 2.440501 CGTGCTTTTGTGTGAGTTCAC 58.559 47.619 5.33 5.33 46.59 3.18
393 425 1.202114 CGGCAACCAAACACTATGCAT 59.798 47.619 3.79 3.79 38.73 3.96
430 462 1.722011 CGTGAGAACTAAATGCGGGT 58.278 50.000 0.00 0.00 0.00 5.28
521 554 3.729965 CTAGACAGGCCCAGCTGCG 62.730 68.421 8.66 0.00 0.00 5.18
543 576 2.033448 CTGCCAAACACGCCCCTA 59.967 61.111 0.00 0.00 0.00 3.53
544 577 2.281900 TGCCAAACACGCCCCTAC 60.282 61.111 0.00 0.00 0.00 3.18
545 578 2.281900 GCCAAACACGCCCCTACA 60.282 61.111 0.00 0.00 0.00 2.74
546 579 2.332654 GCCAAACACGCCCCTACAG 61.333 63.158 0.00 0.00 0.00 2.74
547 580 1.674322 CCAAACACGCCCCTACAGG 60.674 63.158 0.00 0.00 0.00 4.00
548 581 1.072505 CAAACACGCCCCTACAGGT 59.927 57.895 0.00 0.00 0.00 4.00
549 582 0.536460 CAAACACGCCCCTACAGGTT 60.536 55.000 0.00 0.00 0.00 3.50
550 583 0.536460 AAACACGCCCCTACAGGTTG 60.536 55.000 0.00 0.00 0.00 3.77
551 584 2.046314 CACGCCCCTACAGGTTGG 60.046 66.667 0.00 0.00 0.00 3.77
552 585 2.203877 ACGCCCCTACAGGTTGGA 60.204 61.111 1.33 0.00 0.00 3.53
553 586 1.615424 ACGCCCCTACAGGTTGGAT 60.615 57.895 1.33 0.00 0.00 3.41
554 587 1.146263 CGCCCCTACAGGTTGGATC 59.854 63.158 1.33 0.00 0.00 3.36
555 588 1.338136 CGCCCCTACAGGTTGGATCT 61.338 60.000 1.33 0.00 0.00 2.75
556 589 0.919710 GCCCCTACAGGTTGGATCTT 59.080 55.000 1.33 0.00 0.00 2.40
557 590 1.134068 GCCCCTACAGGTTGGATCTTC 60.134 57.143 1.33 0.00 0.00 2.87
558 591 2.482494 CCCCTACAGGTTGGATCTTCT 58.518 52.381 1.33 0.00 0.00 2.85
559 592 2.436173 CCCCTACAGGTTGGATCTTCTC 59.564 54.545 1.33 0.00 0.00 2.87
560 593 2.101582 CCCTACAGGTTGGATCTTCTCG 59.898 54.545 1.33 0.00 0.00 4.04
561 594 3.024547 CCTACAGGTTGGATCTTCTCGA 58.975 50.000 0.00 0.00 0.00 4.04
562 595 3.639094 CCTACAGGTTGGATCTTCTCGAT 59.361 47.826 0.00 0.00 34.25 3.59
563 596 4.827835 CCTACAGGTTGGATCTTCTCGATA 59.172 45.833 0.00 0.00 30.84 2.92
564 597 5.478679 CCTACAGGTTGGATCTTCTCGATAT 59.521 44.000 0.00 0.00 30.84 1.63
565 598 6.659668 CCTACAGGTTGGATCTTCTCGATATA 59.340 42.308 0.00 0.00 30.84 0.86
566 599 6.334102 ACAGGTTGGATCTTCTCGATATAC 57.666 41.667 0.00 0.00 30.84 1.47
567 600 5.833667 ACAGGTTGGATCTTCTCGATATACA 59.166 40.000 0.00 0.00 30.84 2.29
568 601 6.015856 ACAGGTTGGATCTTCTCGATATACAG 60.016 42.308 0.00 0.00 30.84 2.74
569 602 5.478679 AGGTTGGATCTTCTCGATATACAGG 59.521 44.000 0.00 0.00 30.84 4.00
570 603 5.244178 GGTTGGATCTTCTCGATATACAGGT 59.756 44.000 0.00 0.00 30.84 4.00
591 624 3.565214 TGCGCTGGTCCTTTGGGA 61.565 61.111 9.73 0.00 39.70 4.37
604 637 3.073798 TCCTTTGGGAACTTAGCATGACA 59.926 43.478 0.00 0.00 38.93 3.58
609 642 4.072131 TGGGAACTTAGCATGACAACTTC 58.928 43.478 0.00 0.00 0.00 3.01
610 643 3.440522 GGGAACTTAGCATGACAACTTCC 59.559 47.826 0.00 3.63 0.00 3.46
611 644 3.440522 GGAACTTAGCATGACAACTTCCC 59.559 47.826 0.00 0.00 0.00 3.97
621 654 3.162666 TGACAACTTCCCGACTGTCTAT 58.837 45.455 6.21 0.00 39.15 1.98
637 670 7.328277 ACTGTCTATTACAACAAAGTTTGCA 57.672 32.000 15.59 0.89 37.74 4.08
640 674 7.711846 TGTCTATTACAACAAAGTTTGCATGT 58.288 30.769 23.25 23.25 37.63 3.21
644 678 4.045636 ACAACAAAGTTTGCATGTCTCC 57.954 40.909 15.59 0.00 30.95 3.71
651 685 1.808945 GTTTGCATGTCTCCAGTGAGG 59.191 52.381 0.00 0.00 39.23 3.86
666 700 3.406595 GAGGGAGGGGCAATGACGG 62.407 68.421 0.00 0.00 0.00 4.79
693 727 2.401351 GTCTTCGGCTCGTTTAAGTGT 58.599 47.619 0.00 0.00 0.00 3.55
714 748 4.021807 TGTTTGTAGTTGTCGCTAGATGGA 60.022 41.667 0.00 0.00 0.00 3.41
755 792 9.654417 TTTTATTACTTCTCGTGCTTTTGTAAC 57.346 29.630 0.00 0.00 0.00 2.50
764 801 3.420576 CGTGCTTTTGTAACGTTTGATGG 59.579 43.478 5.91 0.00 32.79 3.51
770 807 6.548441 TTTTGTAACGTTTGATGGAGTAGG 57.452 37.500 5.91 0.00 0.00 3.18
774 811 4.553330 AACGTTTGATGGAGTAGGTCAT 57.447 40.909 0.00 0.00 0.00 3.06
1264 1328 1.713404 CAGTTTGCGTAAAATGTGCCG 59.287 47.619 16.65 0.00 37.17 5.69
1275 1339 1.324740 AATGTGCCGCCTGAATGCAT 61.325 50.000 0.00 0.00 37.34 3.96
1277 1341 2.045143 TGCCGCCTGAATGCATCA 60.045 55.556 0.00 0.00 36.38 3.07
1290 1354 4.676444 CATCAAATGCACGAGCCG 57.324 55.556 1.39 0.00 41.13 5.52
1291 1355 1.796151 CATCAAATGCACGAGCCGT 59.204 52.632 1.39 0.00 42.36 5.68
1300 1364 0.793861 GCACGAGCCGTATTTGAACA 59.206 50.000 0.00 0.00 38.32 3.18
1312 1376 5.732647 CCGTATTTGAACATCTTGCTAAACG 59.267 40.000 0.00 0.00 0.00 3.60
1313 1377 6.401688 CCGTATTTGAACATCTTGCTAAACGA 60.402 38.462 0.00 0.00 0.00 3.85
1314 1378 6.461698 CGTATTTGAACATCTTGCTAAACGAC 59.538 38.462 0.00 0.00 0.00 4.34
1315 1379 4.742438 TTGAACATCTTGCTAAACGACC 57.258 40.909 0.00 0.00 0.00 4.79
1316 1380 3.734463 TGAACATCTTGCTAAACGACCA 58.266 40.909 0.00 0.00 0.00 4.02
1325 1389 1.993370 GCTAAACGACCACTAGCACAG 59.007 52.381 0.00 0.00 38.33 3.66
1329 1404 0.039437 ACGACCACTAGCACAGAACG 60.039 55.000 0.00 0.00 0.00 3.95
1332 1407 0.603569 ACCACTAGCACAGAACGAGG 59.396 55.000 0.00 0.00 0.00 4.63
1340 1415 3.391049 AGCACAGAACGAGGACTAAAAC 58.609 45.455 0.00 0.00 0.00 2.43
1349 1424 7.384115 CAGAACGAGGACTAAAACAACTGATTA 59.616 37.037 0.00 0.00 0.00 1.75
1352 1427 8.699283 ACGAGGACTAAAACAACTGATTATAC 57.301 34.615 0.00 0.00 0.00 1.47
1368 1443 8.514594 ACTGATTATACTGACATTTGTTGGTTG 58.485 33.333 0.00 0.00 0.00 3.77
1528 1603 2.106683 GGACAATCCGGCCAAGTCG 61.107 63.158 2.24 0.00 0.00 4.18
1552 1627 3.363844 GACGCTCTCTGCCCTGTCC 62.364 68.421 0.00 0.00 38.78 4.02
1660 1737 9.273016 TGTTTTACTTTGTCCAAAATTTGAACA 57.727 25.926 7.37 0.00 0.00 3.18
1668 1747 9.670719 TTTGTCCAAAATTTGAACAAAGAAAAC 57.329 25.926 17.17 0.00 35.54 2.43
1670 1749 8.502387 TGTCCAAAATTTGAACAAAGAAAACAG 58.498 29.630 7.37 0.00 33.32 3.16
1684 1763 8.244113 ACAAAGAAAACAGGCTTTATATAGCAC 58.756 33.333 15.76 6.55 43.02 4.40
1688 1767 3.393800 ACAGGCTTTATATAGCACGCTG 58.606 45.455 15.76 14.80 43.02 5.18
1691 1770 4.058817 AGGCTTTATATAGCACGCTGTTC 58.941 43.478 15.76 0.00 43.02 3.18
1703 1804 1.009829 CGCTGTTCAGGCATAAGGAC 58.990 55.000 1.97 0.00 0.00 3.85
1704 1805 1.383523 GCTGTTCAGGCATAAGGACC 58.616 55.000 1.97 0.00 0.00 4.46
1705 1806 1.340017 GCTGTTCAGGCATAAGGACCA 60.340 52.381 0.00 0.00 0.00 4.02
1706 1807 2.879756 GCTGTTCAGGCATAAGGACCAA 60.880 50.000 0.00 0.00 0.00 3.67
1707 1808 3.012518 CTGTTCAGGCATAAGGACCAAG 58.987 50.000 0.00 0.00 0.00 3.61
1708 1809 1.745653 GTTCAGGCATAAGGACCAAGC 59.254 52.381 0.00 0.00 0.00 4.01
1709 1810 0.107703 TCAGGCATAAGGACCAAGCG 60.108 55.000 0.00 0.00 0.00 4.68
1710 1811 0.392998 CAGGCATAAGGACCAAGCGT 60.393 55.000 0.00 0.00 0.00 5.07
1741 1842 8.674263 CTTGAGAAGCAGAATATGGACTAAAT 57.326 34.615 0.00 0.00 0.00 1.40
1742 1843 9.118300 CTTGAGAAGCAGAATATGGACTAAATT 57.882 33.333 0.00 0.00 0.00 1.82
1749 1850 7.175641 AGCAGAATATGGACTAAATTATGTGCC 59.824 37.037 0.00 0.00 0.00 5.01
1753 1854 3.287222 TGGACTAAATTATGTGCCCAGC 58.713 45.455 0.00 0.00 0.00 4.85
1756 1857 5.130350 GGACTAAATTATGTGCCCAGCTAA 58.870 41.667 0.00 0.00 0.00 3.09
1759 1860 7.042797 ACTAAATTATGTGCCCAGCTAATTG 57.957 36.000 0.00 0.00 0.00 2.32
1765 1866 0.039472 TGCCCAGCTAATTGCCTTCA 59.961 50.000 0.00 0.00 44.23 3.02
1767 1868 1.957113 GCCCAGCTAATTGCCTTCACT 60.957 52.381 0.00 0.00 44.23 3.41
1769 1870 3.620488 CCCAGCTAATTGCCTTCACTAA 58.380 45.455 0.00 0.00 44.23 2.24
1771 1872 4.276926 CCCAGCTAATTGCCTTCACTAATC 59.723 45.833 0.00 0.00 44.23 1.75
1772 1873 4.883585 CCAGCTAATTGCCTTCACTAATCA 59.116 41.667 0.00 0.00 44.23 2.57
1773 1874 5.533903 CCAGCTAATTGCCTTCACTAATCAT 59.466 40.000 0.00 0.00 44.23 2.45
1774 1875 6.040166 CCAGCTAATTGCCTTCACTAATCATT 59.960 38.462 0.00 0.00 44.23 2.57
1833 1934 6.976925 GCTTTGATTCTGAACTATGGAAATGG 59.023 38.462 0.00 0.00 0.00 3.16
1835 1936 9.177608 CTTTGATTCTGAACTATGGAAATGGTA 57.822 33.333 0.00 0.00 0.00 3.25
1837 1938 7.282585 TGATTCTGAACTATGGAAATGGTAGG 58.717 38.462 0.00 0.00 0.00 3.18
1839 1940 5.989477 TCTGAACTATGGAAATGGTAGGTG 58.011 41.667 0.00 0.00 0.00 4.00
1843 1944 5.615925 ACTATGGAAATGGTAGGTGAGAC 57.384 43.478 0.00 0.00 0.00 3.36
1844 1945 3.933861 ATGGAAATGGTAGGTGAGACC 57.066 47.619 0.00 0.00 38.99 3.85
1860 1961 6.555315 GGTGAGACCTTAGCATATTTTGTTG 58.445 40.000 0.00 0.00 34.73 3.33
1861 1962 6.030228 GTGAGACCTTAGCATATTTTGTTGC 58.970 40.000 0.00 0.00 39.17 4.17
1881 1982 8.315391 TGTTGCTGATGCTCATTAGATATAAC 57.685 34.615 5.92 5.64 40.48 1.89
1882 1983 8.152898 TGTTGCTGATGCTCATTAGATATAACT 58.847 33.333 5.92 0.00 40.48 2.24
2011 2112 7.338703 AGTTTCTAGATCGTTACCAGATGTACA 59.661 37.037 0.00 0.00 0.00 2.90
2055 2156 5.184892 ACAAGGAAGGAGCTTGTATCATT 57.815 39.130 0.00 0.00 39.23 2.57
2077 2178 0.617413 CACTGCTGGATCAGAGGGTT 59.383 55.000 0.00 0.00 37.51 4.11
2096 2197 0.038526 TTCGCTTCAGAGGTCGGTTC 60.039 55.000 0.00 0.00 0.00 3.62
2209 2311 8.478877 ACCACTCTACTTCCTATCATTAGTTTG 58.521 37.037 0.00 0.00 0.00 2.93
2305 2414 4.217510 CCAATCTAAAGGATGGCCATTGA 58.782 43.478 21.84 11.59 34.45 2.57
2322 2431 8.203485 TGGCCATTGATAATATTTCTTCCAAAC 58.797 33.333 0.00 0.00 0.00 2.93
2323 2432 8.424133 GGCCATTGATAATATTTCTTCCAAACT 58.576 33.333 0.00 0.00 0.00 2.66
2385 2494 9.770097 ATAGAAGTACATCTGTCCATGTTTATG 57.230 33.333 10.83 0.00 38.07 1.90
2396 2506 5.867174 TGTCCATGTTTATGTGAACTAGTCG 59.133 40.000 0.00 0.00 32.21 4.18
2424 2544 2.319025 TCCCCACCCTTTTGAAATCC 57.681 50.000 0.00 0.00 0.00 3.01
2483 2603 1.444836 TGTATACAAGTTGGGCACGC 58.555 50.000 7.96 0.00 0.00 5.34
2528 2648 3.046390 GGTAGAGAAGATCGCATCAACG 58.954 50.000 0.00 0.00 0.00 4.10
2552 2672 0.811281 GTCATACCCAGTTTGCAGCC 59.189 55.000 0.00 0.00 0.00 4.85
2582 2702 5.627499 TTGAATCAGAGTACATGTTTGGC 57.373 39.130 2.30 0.00 0.00 4.52
2625 2745 8.774546 AGGAATTCACAGAATGATCTACTCTA 57.225 34.615 7.93 0.00 39.69 2.43
2647 2767 3.953612 ACTGTTGAAAATTCTGGCACTGA 59.046 39.130 0.00 0.00 33.53 3.41
2665 2785 5.048083 GCACTGACAAGGTGATTCCATTTTA 60.048 40.000 0.00 0.00 39.02 1.52
2744 2864 9.148104 ACATCAATAAAACCTTAGTCGTACTTC 57.852 33.333 0.00 0.00 0.00 3.01
2765 2885 5.178096 TCCAGAACCATTTCAATAGAGCA 57.822 39.130 0.00 0.00 33.72 4.26
2801 2921 8.602328 GCATGTTCTGAATATATCTATGTCAGC 58.398 37.037 6.51 0.00 0.00 4.26
2806 2926 6.601217 TCTGAATATATCTATGTCAGCGAGCT 59.399 38.462 6.51 0.00 0.00 4.09
2818 2939 6.583912 TGTCAGCGAGCTATTACAAAATAC 57.416 37.500 0.00 0.00 0.00 1.89
2825 2946 7.010552 AGCGAGCTATTACAAAATACAGAAGTG 59.989 37.037 0.00 0.00 0.00 3.16
2836 2957 6.808321 AAATACAGAAGTGCCACCTAGATA 57.192 37.500 0.00 0.00 0.00 1.98
2849 2970 6.127423 TGCCACCTAGATACTGAGTAAAAGAC 60.127 42.308 0.00 0.00 0.00 3.01
2851 2972 7.418025 GCCACCTAGATACTGAGTAAAAGACAT 60.418 40.741 0.00 0.00 0.00 3.06
2870 2991 4.212716 ACATAAGTATGTCACGCTCCCTA 58.787 43.478 0.00 0.00 42.96 3.53
2876 2997 3.914426 ATGTCACGCTCCCTAAAGAAT 57.086 42.857 0.00 0.00 0.00 2.40
2881 3002 2.939103 CACGCTCCCTAAAGAATTGGAG 59.061 50.000 3.44 3.44 45.83 3.86
2882 3003 2.838202 ACGCTCCCTAAAGAATTGGAGA 59.162 45.455 10.61 0.00 45.93 3.71
2905 3026 8.059798 AGAAAATTAGGACATGGACTTCAATG 57.940 34.615 0.00 0.00 0.00 2.82
2978 3130 1.686052 GGTGCAAATCAGAACCCACAA 59.314 47.619 0.00 0.00 30.25 3.33
3045 3197 6.296259 GGTTCTAGAATGTTAAGTCTCCCCAA 60.296 42.308 8.75 0.00 31.94 4.12
3057 3209 4.604156 AGTCTCCCCAATTCAAATCCTTC 58.396 43.478 0.00 0.00 0.00 3.46
3065 3217 7.124147 TCCCCAATTCAAATCCTTCTCATTTAC 59.876 37.037 0.00 0.00 0.00 2.01
3088 3240 3.380479 TTCTGGAGAAACTGTGGTACG 57.620 47.619 0.00 0.00 0.00 3.67
3122 3274 3.319755 CCCAGATTGTGTGTGCAATTTC 58.680 45.455 0.00 0.00 38.98 2.17
3141 3293 3.634397 TCTGGCATAACCTTCTCCTTG 57.366 47.619 0.00 0.00 40.22 3.61
3166 3320 4.201783 GCATTTTGCATCAGAAGGCATTTC 60.202 41.667 1.30 0.00 42.59 2.17
3169 3323 1.820519 TGCATCAGAAGGCATTTCACC 59.179 47.619 3.45 0.00 37.25 4.02
3178 3332 5.591472 CAGAAGGCATTTCACCATGATCTTA 59.409 40.000 0.00 0.00 38.31 2.10
3185 3339 6.444633 CATTTCACCATGATCTTATCCTTGC 58.555 40.000 0.00 0.00 0.00 4.01
3200 3354 4.607293 TCCTTGCGATGCTTGATACTAT 57.393 40.909 0.00 0.00 0.00 2.12
3306 3460 5.157781 GCGATTTCAGCTAGAGTCGATATT 58.842 41.667 14.72 0.00 37.99 1.28
3353 3507 6.136071 CAGTTAATTTTCACTTGGACGACAG 58.864 40.000 0.00 0.00 0.00 3.51
3471 3625 1.668419 CCGAAAGCTCAGGTAATGGG 58.332 55.000 0.00 0.00 0.00 4.00
3503 3657 3.196254 GGAATGTTCATGCAAGTGGGAAT 59.804 43.478 0.00 0.00 0.00 3.01
3506 3660 2.225091 TGTTCATGCAAGTGGGAATCCT 60.225 45.455 0.00 0.00 0.00 3.24
3535 3689 2.689983 CTGCAGGCTAAATTTACTGGGG 59.310 50.000 5.57 0.00 0.00 4.96
3538 3692 3.876156 GCAGGCTAAATTTACTGGGGTGA 60.876 47.826 14.37 0.00 0.00 4.02
3542 3696 4.580580 GGCTAAATTTACTGGGGTGATCTG 59.419 45.833 0.00 0.00 0.00 2.90
3566 3720 5.241728 GTCCACAGGTGAAAGAAGCTATTTT 59.758 40.000 0.00 0.00 0.00 1.82
3755 3909 1.302431 CACGGGCATCCAGTTGTCA 60.302 57.895 0.00 0.00 0.00 3.58
3833 3987 6.348498 TGTTTCAAGACATGGATGACGATAT 58.652 36.000 0.00 0.00 0.00 1.63
3843 3997 6.263842 ACATGGATGACGATATGCAAGAATTT 59.736 34.615 0.00 0.00 32.05 1.82
3879 4437 8.801299 TCTGTAAATCCATTTTTGCTGATACAA 58.199 29.630 0.00 0.00 29.15 2.41
3902 4460 7.663081 ACAAATATAGCACATTACCAGAGGATG 59.337 37.037 0.00 0.00 0.00 3.51
3973 4531 5.988561 CAGGTATAGGAAAGCATGTTCTCTC 59.011 44.000 0.00 0.00 0.00 3.20
3978 4536 2.746362 GGAAAGCATGTTCTCTCACCAG 59.254 50.000 0.00 0.00 0.00 4.00
3989 4547 0.612174 TCTCACCAGCCGCTTACTCT 60.612 55.000 0.00 0.00 0.00 3.24
3994 4552 0.037326 CCAGCCGCTTACTCTGACAA 60.037 55.000 0.00 0.00 0.00 3.18
4000 4558 2.186076 CGCTTACTCTGACAATCCGAC 58.814 52.381 0.00 0.00 0.00 4.79
4003 4561 3.119459 GCTTACTCTGACAATCCGACTCA 60.119 47.826 0.00 0.00 0.00 3.41
4243 4801 1.674441 CTCTATGTACGGCAGGAACGA 59.326 52.381 0.00 0.00 34.93 3.85
4245 4803 1.133598 CTATGTACGGCAGGAACGACA 59.866 52.381 0.00 0.00 34.93 4.35
4302 4860 0.035915 GCTCCTCCAGTTCTTCACCC 60.036 60.000 0.00 0.00 0.00 4.61
4349 4923 1.746239 CACATCATGTGGCCGAGCA 60.746 57.895 10.22 0.00 44.27 4.26
4374 4948 1.444553 CGACGCTCCTGAACCTGAC 60.445 63.158 0.00 0.00 0.00 3.51
4384 4958 1.374758 GAACCTGACGGCCTCACAG 60.375 63.158 0.00 7.43 0.00 3.66
4414 4988 0.032678 ACATGGTCATCGGCGATCTC 59.967 55.000 21.25 15.07 0.00 2.75
4415 4989 0.032540 CATGGTCATCGGCGATCTCA 59.967 55.000 21.25 17.62 0.00 3.27
4498 5072 2.997315 CCGAGGGTGAGTGCCTCA 60.997 66.667 0.00 1.25 38.25 3.86
4538 5112 0.797249 CGCCATATCGCCGTAGCTAC 60.797 60.000 14.19 14.19 36.60 3.58
4603 5177 1.288335 AGGAACTCGGACCATAGACCT 59.712 52.381 0.00 1.19 0.00 3.85
4608 5182 1.740285 CGGACCATAGACCTTCCGG 59.260 63.158 0.00 0.00 45.95 5.14
4658 5232 4.569023 CGCGTATCCGGAGCAGCA 62.569 66.667 22.08 0.00 33.68 4.41
4660 5234 2.808315 CGTATCCGGAGCAGCACT 59.192 61.111 11.34 0.00 0.00 4.40
4663 5237 0.528684 GTATCCGGAGCAGCACTGAC 60.529 60.000 11.34 0.00 0.00 3.51
4665 5239 1.548357 ATCCGGAGCAGCACTGACTT 61.548 55.000 11.34 0.00 0.00 3.01
4680 5254 3.854669 CTTCCCGGAGCCGCATCT 61.855 66.667 0.73 0.00 38.24 2.90
4702 5276 3.124921 GTGACGCCGAACCATGGG 61.125 66.667 18.09 0.00 0.00 4.00
4710 5284 3.451894 GAACCATGGGGCCTTGCG 61.452 66.667 18.09 0.00 37.90 4.85
4711 5285 4.299796 AACCATGGGGCCTTGCGT 62.300 61.111 18.09 0.00 37.90 5.24
4720 5294 4.643387 GCCTTGCGTGGGTCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
4721 5295 2.358737 CCTTGCGTGGGTCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
4722 5296 2.425592 CTTGCGTGGGTCCTGTCA 59.574 61.111 0.00 0.00 0.00 3.58
4723 5297 1.669115 CTTGCGTGGGTCCTGTCAG 60.669 63.158 0.00 0.00 0.00 3.51
4724 5298 3.177194 TTGCGTGGGTCCTGTCAGG 62.177 63.158 13.21 13.21 36.46 3.86
4725 5299 3.626924 GCGTGGGTCCTGTCAGGT 61.627 66.667 18.65 0.00 36.53 4.00
4726 5300 2.657237 CGTGGGTCCTGTCAGGTC 59.343 66.667 18.65 12.99 36.53 3.85
4727 5301 2.943978 CGTGGGTCCTGTCAGGTCC 61.944 68.421 22.98 22.98 41.99 4.46
4728 5302 1.841556 GTGGGTCCTGTCAGGTCCA 60.842 63.158 29.29 26.24 44.12 4.02
4729 5303 1.074090 TGGGTCCTGTCAGGTCCAA 60.074 57.895 29.29 20.15 44.12 3.53
4730 5304 0.696143 TGGGTCCTGTCAGGTCCAAA 60.696 55.000 29.29 17.86 44.12 3.28
4731 5305 0.036875 GGGTCCTGTCAGGTCCAAAG 59.963 60.000 29.29 1.12 44.12 2.77
4732 5306 0.606673 GGTCCTGTCAGGTCCAAAGC 60.607 60.000 25.26 10.05 42.25 3.51
4733 5307 0.398318 GTCCTGTCAGGTCCAAAGCT 59.602 55.000 18.65 0.00 36.53 3.74
4734 5308 0.687354 TCCTGTCAGGTCCAAAGCTC 59.313 55.000 18.65 0.00 36.53 4.09
4735 5309 0.397941 CCTGTCAGGTCCAAAGCTCA 59.602 55.000 11.09 0.00 0.00 4.26
4736 5310 1.610102 CCTGTCAGGTCCAAAGCTCAG 60.610 57.143 11.09 0.00 0.00 3.35
4737 5311 1.345741 CTGTCAGGTCCAAAGCTCAGA 59.654 52.381 0.00 0.00 30.35 3.27
4738 5312 1.768275 TGTCAGGTCCAAAGCTCAGAA 59.232 47.619 0.00 0.00 0.00 3.02
4739 5313 2.373169 TGTCAGGTCCAAAGCTCAGAAT 59.627 45.455 0.00 0.00 0.00 2.40
4740 5314 3.006247 GTCAGGTCCAAAGCTCAGAATC 58.994 50.000 0.00 0.00 0.00 2.52
4741 5315 2.639347 TCAGGTCCAAAGCTCAGAATCA 59.361 45.455 0.00 0.00 0.00 2.57
4742 5316 3.072915 TCAGGTCCAAAGCTCAGAATCAA 59.927 43.478 0.00 0.00 0.00 2.57
4743 5317 3.439476 CAGGTCCAAAGCTCAGAATCAAG 59.561 47.826 0.00 0.00 0.00 3.02
4744 5318 2.163211 GGTCCAAAGCTCAGAATCAAGC 59.837 50.000 0.00 0.13 38.84 4.01
4745 5319 2.816087 GTCCAAAGCTCAGAATCAAGCA 59.184 45.455 9.71 0.00 41.06 3.91
4746 5320 3.254166 GTCCAAAGCTCAGAATCAAGCAA 59.746 43.478 9.71 0.00 41.06 3.91
4747 5321 4.082354 GTCCAAAGCTCAGAATCAAGCAAT 60.082 41.667 9.71 0.00 41.06 3.56
4748 5322 4.525487 TCCAAAGCTCAGAATCAAGCAATT 59.475 37.500 9.71 2.84 41.06 2.32
4749 5323 5.011329 TCCAAAGCTCAGAATCAAGCAATTT 59.989 36.000 9.71 1.31 41.06 1.82
4750 5324 6.209192 TCCAAAGCTCAGAATCAAGCAATTTA 59.791 34.615 9.71 0.00 41.06 1.40
4751 5325 6.869913 CCAAAGCTCAGAATCAAGCAATTTAA 59.130 34.615 9.71 0.00 41.06 1.52
4752 5326 7.148689 CCAAAGCTCAGAATCAAGCAATTTAAC 60.149 37.037 9.71 0.00 41.06 2.01
4753 5327 6.830873 AGCTCAGAATCAAGCAATTTAACT 57.169 33.333 9.71 0.00 41.06 2.24
4754 5328 7.928307 AGCTCAGAATCAAGCAATTTAACTA 57.072 32.000 9.71 0.00 41.06 2.24
4755 5329 7.756558 AGCTCAGAATCAAGCAATTTAACTAC 58.243 34.615 9.71 0.00 41.06 2.73
4756 5330 6.969473 GCTCAGAATCAAGCAATTTAACTACC 59.031 38.462 3.26 0.00 38.42 3.18
4757 5331 7.362056 GCTCAGAATCAAGCAATTTAACTACCA 60.362 37.037 3.26 0.00 38.42 3.25
4758 5332 8.044060 TCAGAATCAAGCAATTTAACTACCAG 57.956 34.615 0.00 0.00 0.00 4.00
4759 5333 7.882791 TCAGAATCAAGCAATTTAACTACCAGA 59.117 33.333 0.00 0.00 0.00 3.86
4760 5334 8.180267 CAGAATCAAGCAATTTAACTACCAGAG 58.820 37.037 0.00 0.00 0.00 3.35
4761 5335 5.880054 TCAAGCAATTTAACTACCAGAGC 57.120 39.130 0.00 0.00 0.00 4.09
4762 5336 5.312895 TCAAGCAATTTAACTACCAGAGCA 58.687 37.500 0.00 0.00 0.00 4.26
4763 5337 5.767665 TCAAGCAATTTAACTACCAGAGCAA 59.232 36.000 0.00 0.00 0.00 3.91
4764 5338 5.629079 AGCAATTTAACTACCAGAGCAAC 57.371 39.130 0.00 0.00 0.00 4.17
4765 5339 5.070001 AGCAATTTAACTACCAGAGCAACA 58.930 37.500 0.00 0.00 0.00 3.33
4766 5340 5.534654 AGCAATTTAACTACCAGAGCAACAA 59.465 36.000 0.00 0.00 0.00 2.83
4767 5341 6.040391 AGCAATTTAACTACCAGAGCAACAAA 59.960 34.615 0.00 0.00 0.00 2.83
4768 5342 6.868339 GCAATTTAACTACCAGAGCAACAAAT 59.132 34.615 0.00 0.00 0.00 2.32
4769 5343 7.384932 GCAATTTAACTACCAGAGCAACAAATT 59.615 33.333 0.00 0.00 0.00 1.82
4770 5344 9.260002 CAATTTAACTACCAGAGCAACAAATTT 57.740 29.630 0.00 0.00 0.00 1.82
4773 5347 6.575162 AACTACCAGAGCAACAAATTTAGG 57.425 37.500 0.00 0.00 0.00 2.69
4774 5348 5.876357 ACTACCAGAGCAACAAATTTAGGA 58.124 37.500 0.00 0.00 0.00 2.94
4775 5349 5.940470 ACTACCAGAGCAACAAATTTAGGAG 59.060 40.000 0.00 0.00 0.00 3.69
4776 5350 4.082125 ACCAGAGCAACAAATTTAGGAGG 58.918 43.478 0.00 0.00 0.00 4.30
4777 5351 4.202567 ACCAGAGCAACAAATTTAGGAGGA 60.203 41.667 0.00 0.00 0.00 3.71
4778 5352 4.397417 CCAGAGCAACAAATTTAGGAGGAG 59.603 45.833 0.00 0.00 0.00 3.69
4779 5353 5.248640 CAGAGCAACAAATTTAGGAGGAGA 58.751 41.667 0.00 0.00 0.00 3.71
4780 5354 5.707298 CAGAGCAACAAATTTAGGAGGAGAA 59.293 40.000 0.00 0.00 0.00 2.87
4781 5355 5.707764 AGAGCAACAAATTTAGGAGGAGAAC 59.292 40.000 0.00 0.00 0.00 3.01
4782 5356 5.385198 AGCAACAAATTTAGGAGGAGAACA 58.615 37.500 0.00 0.00 0.00 3.18
4783 5357 5.474876 AGCAACAAATTTAGGAGGAGAACAG 59.525 40.000 0.00 0.00 0.00 3.16
4784 5358 5.335976 GCAACAAATTTAGGAGGAGAACAGG 60.336 44.000 0.00 0.00 0.00 4.00
4785 5359 5.843019 ACAAATTTAGGAGGAGAACAGGA 57.157 39.130 0.00 0.00 0.00 3.86
4786 5360 5.810095 ACAAATTTAGGAGGAGAACAGGAG 58.190 41.667 0.00 0.00 0.00 3.69
4787 5361 4.495690 AATTTAGGAGGAGAACAGGAGC 57.504 45.455 0.00 0.00 0.00 4.70
4788 5362 2.930109 TTAGGAGGAGAACAGGAGCT 57.070 50.000 0.00 0.00 0.00 4.09
4789 5363 2.930109 TAGGAGGAGAACAGGAGCTT 57.070 50.000 0.00 0.00 0.00 3.74
4790 5364 1.567357 AGGAGGAGAACAGGAGCTTC 58.433 55.000 0.00 0.00 0.00 3.86
4791 5365 1.203237 AGGAGGAGAACAGGAGCTTCA 60.203 52.381 0.00 0.00 0.00 3.02
4792 5366 1.625818 GGAGGAGAACAGGAGCTTCAA 59.374 52.381 0.00 0.00 0.00 2.69
4793 5367 2.039084 GGAGGAGAACAGGAGCTTCAAA 59.961 50.000 0.00 0.00 0.00 2.69
4794 5368 3.070748 GAGGAGAACAGGAGCTTCAAAC 58.929 50.000 0.00 0.00 0.00 2.93
4795 5369 2.708325 AGGAGAACAGGAGCTTCAAACT 59.292 45.455 0.00 0.00 0.00 2.66
4796 5370 3.904339 AGGAGAACAGGAGCTTCAAACTA 59.096 43.478 0.00 0.00 0.00 2.24
4797 5371 4.020662 AGGAGAACAGGAGCTTCAAACTAG 60.021 45.833 0.00 0.00 0.00 2.57
4798 5372 4.249661 GAGAACAGGAGCTTCAAACTAGG 58.750 47.826 0.00 0.00 0.00 3.02
4799 5373 3.008485 AGAACAGGAGCTTCAAACTAGGG 59.992 47.826 0.00 0.00 0.00 3.53
4800 5374 2.339769 ACAGGAGCTTCAAACTAGGGT 58.660 47.619 0.00 0.00 0.00 4.34
4801 5375 2.711547 ACAGGAGCTTCAAACTAGGGTT 59.288 45.455 0.00 0.00 37.24 4.11
4802 5376 3.908103 ACAGGAGCTTCAAACTAGGGTTA 59.092 43.478 0.00 0.00 34.90 2.85
4803 5377 4.536489 ACAGGAGCTTCAAACTAGGGTTAT 59.464 41.667 0.00 0.00 34.90 1.89
4804 5378 5.014228 ACAGGAGCTTCAAACTAGGGTTATT 59.986 40.000 0.00 0.00 34.90 1.40
4805 5379 5.355350 CAGGAGCTTCAAACTAGGGTTATTG 59.645 44.000 0.00 0.00 34.90 1.90
4806 5380 4.096532 GGAGCTTCAAACTAGGGTTATTGC 59.903 45.833 0.00 0.00 34.90 3.56
4807 5381 4.923415 AGCTTCAAACTAGGGTTATTGCT 58.077 39.130 0.00 0.00 34.90 3.91
4808 5382 6.062258 AGCTTCAAACTAGGGTTATTGCTA 57.938 37.500 0.00 0.00 34.90 3.49
4809 5383 6.481643 AGCTTCAAACTAGGGTTATTGCTAA 58.518 36.000 0.00 0.00 34.90 3.09
4810 5384 6.599638 AGCTTCAAACTAGGGTTATTGCTAAG 59.400 38.462 0.00 0.00 34.90 2.18
4811 5385 6.598064 GCTTCAAACTAGGGTTATTGCTAAGA 59.402 38.462 0.00 0.00 34.90 2.10
4812 5386 7.120726 GCTTCAAACTAGGGTTATTGCTAAGAA 59.879 37.037 0.00 0.00 34.90 2.52
4813 5387 8.927675 TTCAAACTAGGGTTATTGCTAAGAAA 57.072 30.769 0.00 0.00 34.90 2.52
4814 5388 9.528489 TTCAAACTAGGGTTATTGCTAAGAAAT 57.472 29.630 0.00 0.00 34.90 2.17
4815 5389 8.956426 TCAAACTAGGGTTATTGCTAAGAAATG 58.044 33.333 0.00 0.00 34.90 2.32
4816 5390 7.881775 AACTAGGGTTATTGCTAAGAAATGG 57.118 36.000 0.00 0.00 33.39 3.16
4817 5391 6.365520 ACTAGGGTTATTGCTAAGAAATGGG 58.634 40.000 0.00 0.00 0.00 4.00
4818 5392 4.546674 AGGGTTATTGCTAAGAAATGGGG 58.453 43.478 0.00 0.00 0.00 4.96
4819 5393 4.231890 AGGGTTATTGCTAAGAAATGGGGA 59.768 41.667 0.00 0.00 0.00 4.81
4820 5394 4.959839 GGGTTATTGCTAAGAAATGGGGAA 59.040 41.667 0.00 0.00 0.00 3.97
4821 5395 5.423931 GGGTTATTGCTAAGAAATGGGGAAA 59.576 40.000 0.00 0.00 0.00 3.13
4822 5396 6.070481 GGGTTATTGCTAAGAAATGGGGAAAA 60.070 38.462 0.00 0.00 0.00 2.29
4823 5397 7.365563 GGGTTATTGCTAAGAAATGGGGAAAAT 60.366 37.037 0.00 0.00 0.00 1.82
4824 5398 8.700973 GGTTATTGCTAAGAAATGGGGAAAATA 58.299 33.333 0.00 0.00 0.00 1.40
4825 5399 9.750125 GTTATTGCTAAGAAATGGGGAAAATAG 57.250 33.333 0.00 0.00 0.00 1.73
4826 5400 6.790232 TTGCTAAGAAATGGGGAAAATAGG 57.210 37.500 0.00 0.00 0.00 2.57
4827 5401 5.208121 TGCTAAGAAATGGGGAAAATAGGG 58.792 41.667 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.225019 GCATGTCAGGAGTCAACAACTG 59.775 50.000 0.00 0.00 38.74 3.16
86 87 2.515901 GCACCTGGTCACCACCTT 59.484 61.111 0.00 0.00 44.17 3.50
128 129 1.026718 GGATTGTCCCAGGCGTTCAG 61.027 60.000 0.00 0.00 0.00 3.02
251 270 3.121279 CGACGTCAGGAATAACACACAAG 59.879 47.826 17.16 0.00 0.00 3.16
271 302 0.973632 AGGTTACCAGCACACATCGA 59.026 50.000 3.51 0.00 0.00 3.59
293 324 6.372659 GTCTGAAAACCTCTTTGATGCTATGA 59.627 38.462 0.00 0.00 0.00 2.15
296 327 5.620206 TGTCTGAAAACCTCTTTGATGCTA 58.380 37.500 0.00 0.00 0.00 3.49
365 396 2.695759 TTTGGTTGCCGGCATAGCG 61.696 57.895 33.25 0.00 0.00 4.26
366 397 1.153842 GTTTGGTTGCCGGCATAGC 60.154 57.895 33.25 27.72 0.00 2.97
368 399 0.538516 AGTGTTTGGTTGCCGGCATA 60.539 50.000 33.25 18.58 0.00 3.14
373 404 0.595588 TGCATAGTGTTTGGTTGCCG 59.404 50.000 0.00 0.00 32.39 5.69
393 425 3.644265 TCACGCATTAGGGGATAGCTTAA 59.356 43.478 0.00 0.00 0.00 1.85
430 462 5.288015 CAACATCTGCACATTGTTTGGTTA 58.712 37.500 2.30 0.00 31.48 2.85
483 516 1.085091 CTCAAGCCTGACTCACATGC 58.915 55.000 0.00 0.00 39.74 4.06
521 554 4.683334 GCGTGTTTGGCAGCCGTC 62.683 66.667 7.03 0.00 0.00 4.79
542 575 7.002276 TGTATATCGAGAAGATCCAACCTGTA 58.998 38.462 0.00 0.00 40.66 2.74
543 576 5.833667 TGTATATCGAGAAGATCCAACCTGT 59.166 40.000 0.00 0.00 40.66 4.00
544 577 6.332735 TGTATATCGAGAAGATCCAACCTG 57.667 41.667 0.00 0.00 40.66 4.00
545 578 5.478679 CCTGTATATCGAGAAGATCCAACCT 59.521 44.000 0.00 0.00 40.66 3.50
546 579 5.244178 ACCTGTATATCGAGAAGATCCAACC 59.756 44.000 0.00 0.00 40.66 3.77
547 580 6.334102 ACCTGTATATCGAGAAGATCCAAC 57.666 41.667 0.00 0.00 40.66 3.77
548 581 6.239317 CCAACCTGTATATCGAGAAGATCCAA 60.239 42.308 0.00 0.00 40.66 3.53
549 582 5.243954 CCAACCTGTATATCGAGAAGATCCA 59.756 44.000 0.00 0.00 40.66 3.41
550 583 5.244178 ACCAACCTGTATATCGAGAAGATCC 59.756 44.000 0.00 0.00 40.66 3.36
551 584 6.153067 CACCAACCTGTATATCGAGAAGATC 58.847 44.000 0.00 0.00 40.66 2.75
552 585 5.509840 GCACCAACCTGTATATCGAGAAGAT 60.510 44.000 0.00 0.00 43.19 2.40
553 586 4.202121 GCACCAACCTGTATATCGAGAAGA 60.202 45.833 0.00 0.00 0.00 2.87
554 587 4.051922 GCACCAACCTGTATATCGAGAAG 58.948 47.826 0.00 0.00 0.00 2.85
555 588 3.490249 CGCACCAACCTGTATATCGAGAA 60.490 47.826 0.00 0.00 0.00 2.87
556 589 2.034179 CGCACCAACCTGTATATCGAGA 59.966 50.000 0.00 0.00 0.00 4.04
557 590 2.394708 CGCACCAACCTGTATATCGAG 58.605 52.381 0.00 0.00 0.00 4.04
558 591 1.537348 GCGCACCAACCTGTATATCGA 60.537 52.381 0.30 0.00 0.00 3.59
559 592 0.859232 GCGCACCAACCTGTATATCG 59.141 55.000 0.30 0.00 0.00 2.92
560 593 1.867233 CAGCGCACCAACCTGTATATC 59.133 52.381 11.47 0.00 0.00 1.63
561 594 1.475034 CCAGCGCACCAACCTGTATAT 60.475 52.381 11.47 0.00 0.00 0.86
562 595 0.107897 CCAGCGCACCAACCTGTATA 60.108 55.000 11.47 0.00 0.00 1.47
563 596 1.377202 CCAGCGCACCAACCTGTAT 60.377 57.895 11.47 0.00 0.00 2.29
564 597 2.031919 CCAGCGCACCAACCTGTA 59.968 61.111 11.47 0.00 0.00 2.74
565 598 4.189580 ACCAGCGCACCAACCTGT 62.190 61.111 11.47 0.00 0.00 4.00
566 599 3.357079 GACCAGCGCACCAACCTG 61.357 66.667 11.47 0.00 0.00 4.00
567 600 4.643387 GGACCAGCGCACCAACCT 62.643 66.667 11.47 0.00 0.00 3.50
568 601 4.643387 AGGACCAGCGCACCAACC 62.643 66.667 11.47 6.35 0.00 3.77
569 602 2.193536 AAAGGACCAGCGCACCAAC 61.194 57.895 11.47 0.00 0.00 3.77
570 603 2.192861 CAAAGGACCAGCGCACCAA 61.193 57.895 11.47 0.00 0.00 3.67
591 624 3.074412 CGGGAAGTTGTCATGCTAAGTT 58.926 45.455 0.00 0.00 0.00 2.66
604 637 5.011329 TGTTGTAATAGACAGTCGGGAAGTT 59.989 40.000 0.00 0.00 39.88 2.66
609 642 5.235516 ACTTTGTTGTAATAGACAGTCGGG 58.764 41.667 0.00 0.00 39.88 5.14
610 643 6.780706 AACTTTGTTGTAATAGACAGTCGG 57.219 37.500 0.00 0.00 39.88 4.79
611 644 6.573725 GCAAACTTTGTTGTAATAGACAGTCG 59.426 38.462 3.48 0.00 39.88 4.18
621 654 5.126222 TGGAGACATGCAAACTTTGTTGTAA 59.874 36.000 10.42 0.00 32.09 2.41
644 678 1.077212 CATTGCCCCTCCCTCACTG 60.077 63.158 0.00 0.00 0.00 3.66
651 685 2.438434 CACCGTCATTGCCCCTCC 60.438 66.667 0.00 0.00 0.00 4.30
674 708 2.806608 ACACTTAAACGAGCCGAAGA 57.193 45.000 1.50 0.00 0.00 2.87
678 712 3.492011 ACTACAAACACTTAAACGAGCCG 59.508 43.478 0.00 0.00 0.00 5.52
685 719 6.979817 TCTAGCGACAACTACAAACACTTAAA 59.020 34.615 0.00 0.00 0.00 1.52
686 720 6.506147 TCTAGCGACAACTACAAACACTTAA 58.494 36.000 0.00 0.00 0.00 1.85
693 727 4.794278 TCCATCTAGCGACAACTACAAA 57.206 40.909 0.00 0.00 0.00 2.83
755 792 5.661458 ACTTATGACCTACTCCATCAAACG 58.339 41.667 0.00 0.00 0.00 3.60
795 839 2.710377 TCAGCTCGTTTATGCAACCAT 58.290 42.857 0.00 0.00 35.44 3.55
1180 1242 9.224267 CTAGGACCATATAATTTCCAATCAGTG 57.776 37.037 0.00 0.00 0.00 3.66
1275 1339 1.732941 AATACGGCTCGTGCATTTGA 58.267 45.000 12.07 0.00 41.39 2.69
1277 1341 2.080693 TCAAATACGGCTCGTGCATTT 58.919 42.857 12.07 6.16 41.39 2.32
1282 1346 2.930040 AGATGTTCAAATACGGCTCGTG 59.070 45.455 10.01 0.00 41.39 4.35
1290 1354 6.741358 GGTCGTTTAGCAAGATGTTCAAATAC 59.259 38.462 0.00 0.00 0.00 1.89
1291 1355 6.428465 TGGTCGTTTAGCAAGATGTTCAAATA 59.572 34.615 0.00 0.00 31.13 1.40
1300 1364 3.056107 TGCTAGTGGTCGTTTAGCAAGAT 60.056 43.478 3.18 0.00 44.77 2.40
1312 1376 1.402984 CCTCGTTCTGTGCTAGTGGTC 60.403 57.143 0.00 0.00 0.00 4.02
1313 1377 0.603569 CCTCGTTCTGTGCTAGTGGT 59.396 55.000 0.00 0.00 0.00 4.16
1314 1378 0.888619 TCCTCGTTCTGTGCTAGTGG 59.111 55.000 0.00 0.00 0.00 4.00
1315 1379 1.542030 AGTCCTCGTTCTGTGCTAGTG 59.458 52.381 0.00 0.00 0.00 2.74
1316 1380 1.912417 AGTCCTCGTTCTGTGCTAGT 58.088 50.000 0.00 0.00 0.00 2.57
1325 1389 6.541111 AATCAGTTGTTTTAGTCCTCGTTC 57.459 37.500 0.00 0.00 0.00 3.95
1329 1404 9.871238 TCAGTATAATCAGTTGTTTTAGTCCTC 57.129 33.333 0.00 0.00 0.00 3.71
1340 1415 8.514594 ACCAACAAATGTCAGTATAATCAGTTG 58.485 33.333 0.00 0.00 40.22 3.16
1368 1443 9.457436 TCCAGGAGTACAAACCTTAATAAAATC 57.543 33.333 0.00 0.00 33.91 2.17
1423 1498 2.768253 TGGATGCAGACAATTCGACT 57.232 45.000 0.00 0.00 0.00 4.18
1552 1627 1.522355 AACCGCTCTGATGGCATCG 60.522 57.895 21.65 16.05 0.00 3.84
1660 1737 7.472543 CGTGCTATATAAAGCCTGTTTTCTTT 58.527 34.615 0.00 0.00 42.05 2.52
1661 1738 6.458342 GCGTGCTATATAAAGCCTGTTTTCTT 60.458 38.462 0.00 0.00 42.05 2.52
1662 1739 5.007724 GCGTGCTATATAAAGCCTGTTTTCT 59.992 40.000 0.00 0.00 42.05 2.52
1663 1740 5.007724 AGCGTGCTATATAAAGCCTGTTTTC 59.992 40.000 0.00 0.00 42.05 2.29
1668 1747 3.393800 ACAGCGTGCTATATAAAGCCTG 58.606 45.455 0.00 0.00 42.05 4.85
1670 1749 3.807622 TGAACAGCGTGCTATATAAAGCC 59.192 43.478 0.00 0.00 42.05 4.35
1684 1763 1.009829 GTCCTTATGCCTGAACAGCG 58.990 55.000 0.00 0.00 0.00 5.18
1688 1767 1.745653 GCTTGGTCCTTATGCCTGAAC 59.254 52.381 0.00 0.00 0.00 3.18
1691 1770 0.392998 ACGCTTGGTCCTTATGCCTG 60.393 55.000 0.00 0.00 0.00 4.85
1706 1807 3.149899 CTTCTCAAGCATGGACGCT 57.850 52.632 0.00 0.00 46.67 5.07
1730 1831 5.070001 GCTGGGCACATAATTTAGTCCATA 58.930 41.667 0.00 0.00 0.00 2.74
1741 1842 2.031120 GGCAATTAGCTGGGCACATAA 58.969 47.619 0.00 0.00 44.79 1.90
1742 1843 1.215173 AGGCAATTAGCTGGGCACATA 59.785 47.619 0.00 0.00 44.79 2.29
1749 1850 4.883585 TGATTAGTGAAGGCAATTAGCTGG 59.116 41.667 0.00 0.00 44.79 4.85
1813 1914 7.227512 CACCTACCATTTCCATAGTTCAGAATC 59.772 40.741 0.00 0.00 0.00 2.52
1817 1918 5.989477 TCACCTACCATTTCCATAGTTCAG 58.011 41.667 0.00 0.00 0.00 3.02
1824 1925 3.933861 GGTCTCACCTACCATTTCCAT 57.066 47.619 0.00 0.00 36.96 3.41
1835 1936 8.971501 GCAACAAAATATGCTAAGGTCTCACCT 61.972 40.741 0.00 0.00 44.23 4.00
1837 1938 6.030228 GCAACAAAATATGCTAAGGTCTCAC 58.970 40.000 0.00 0.00 39.46 3.51
1864 1965 6.373774 GCCTGCAAGTTATATCTAATGAGCAT 59.626 38.462 0.00 0.00 0.00 3.79
1867 1968 7.157347 TCAGCCTGCAAGTTATATCTAATGAG 58.843 38.462 0.00 0.00 0.00 2.90
1881 1982 0.251354 TAGCCTCTTCAGCCTGCAAG 59.749 55.000 0.00 0.00 0.00 4.01
1882 1983 0.692476 TTAGCCTCTTCAGCCTGCAA 59.308 50.000 0.00 0.00 0.00 4.08
1902 2003 5.102953 TGCCTGCTAGTTGACTTATCAAT 57.897 39.130 0.00 0.00 46.43 2.57
2011 2112 5.191722 TGTCATATGGACCCTTAAGAAGCTT 59.808 40.000 3.36 0.00 46.38 3.74
2055 2156 0.900421 CCTCTGATCCAGCAGTGACA 59.100 55.000 0.00 0.00 37.20 3.58
2077 2178 0.038526 GAACCGACCTCTGAAGCGAA 60.039 55.000 0.00 0.00 0.00 4.70
2096 2197 3.065786 ACTTATCCAATGTCGCTGCAATG 59.934 43.478 0.00 0.00 0.00 2.82
2151 2252 4.273480 CAGTGCTATATTGGTGTTGCCTAC 59.727 45.833 0.00 0.00 38.35 3.18
2283 2391 4.217510 TCAATGGCCATCCTTTAGATTGG 58.782 43.478 21.08 0.00 30.59 3.16
2322 2431 7.981789 TGAAGTGCTGATAACTATGGACTAAAG 59.018 37.037 0.00 0.00 31.15 1.85
2323 2432 7.847096 TGAAGTGCTGATAACTATGGACTAAA 58.153 34.615 0.00 0.00 31.15 1.85
2385 2494 4.567159 GGGATGATCAAACGACTAGTTCAC 59.433 45.833 0.00 0.00 43.37 3.18
2396 2506 2.532250 AAGGGTGGGGATGATCAAAC 57.468 50.000 0.00 0.00 0.00 2.93
2424 2544 3.490419 GCCCATAGCTGCAATCAGAAAAG 60.490 47.826 1.02 0.00 42.95 2.27
2528 2648 2.084546 GCAAACTGGGTATGACCACTC 58.915 52.381 0.00 0.00 41.02 3.51
2552 2672 6.990939 ACATGTACTCTGATTCAATCTCCATG 59.009 38.462 0.00 11.00 0.00 3.66
2606 2726 7.611855 TCAACAGTAGAGTAGATCATTCTGTGA 59.388 37.037 0.00 0.00 42.06 3.58
2625 2745 3.953612 TCAGTGCCAGAATTTTCAACAGT 59.046 39.130 0.00 0.00 0.00 3.55
2689 2809 9.019764 CCTTTGTGTTTAATTGTTTGTACTGAG 57.980 33.333 0.00 0.00 0.00 3.35
2695 2815 9.660180 ATGTAACCTTTGTGTTTAATTGTTTGT 57.340 25.926 0.00 0.00 0.00 2.83
2719 2839 8.601476 GGAAGTACGACTAAGGTTTTATTGATG 58.399 37.037 0.00 0.00 0.00 3.07
2744 2864 5.065731 GTCTGCTCTATTGAAATGGTTCTGG 59.934 44.000 0.00 0.00 34.60 3.86
2765 2885 1.341209 TCAGAACATGCACACGAGTCT 59.659 47.619 0.00 0.00 0.00 3.24
2781 2901 6.601217 AGCTCGCTGACATAGATATATTCAGA 59.399 38.462 13.29 0.00 36.58 3.27
2801 2921 7.119997 GCACTTCTGTATTTTGTAATAGCTCG 58.880 38.462 0.00 0.00 0.00 5.03
2806 2926 7.172342 AGGTGGCACTTCTGTATTTTGTAATA 58.828 34.615 18.45 0.00 0.00 0.98
2810 2931 3.832527 AGGTGGCACTTCTGTATTTTGT 58.167 40.909 18.45 0.00 0.00 2.83
2818 2939 3.701542 TCAGTATCTAGGTGGCACTTCTG 59.298 47.826 18.45 12.68 0.00 3.02
2825 2946 6.127423 TGTCTTTTACTCAGTATCTAGGTGGC 60.127 42.308 0.00 0.00 0.00 5.01
2849 2970 3.735237 AGGGAGCGTGACATACTTATG 57.265 47.619 0.00 0.00 39.55 1.90
2851 2972 4.951715 TCTTTAGGGAGCGTGACATACTTA 59.048 41.667 0.00 0.00 0.00 2.24
2870 2991 8.534496 CCATGTCCTAATTTTCTCCAATTCTTT 58.466 33.333 0.00 0.00 0.00 2.52
2876 2997 6.139679 AGTCCATGTCCTAATTTTCTCCAA 57.860 37.500 0.00 0.00 0.00 3.53
2881 3002 6.753744 GCATTGAAGTCCATGTCCTAATTTTC 59.246 38.462 0.00 0.00 0.00 2.29
2882 3003 6.211184 TGCATTGAAGTCCATGTCCTAATTTT 59.789 34.615 0.00 0.00 0.00 1.82
2932 3054 7.156876 ACATAATTGGGTGTAAGACAATGTG 57.843 36.000 0.00 0.00 35.22 3.21
2938 3060 5.949735 CACCAACATAATTGGGTGTAAGAC 58.050 41.667 10.32 0.00 44.47 3.01
2962 3114 5.327616 TGCATATTGTGGGTTCTGATTTG 57.672 39.130 0.00 0.00 0.00 2.32
2978 3130 4.080129 AGTGGGACTTCACAGAATGCATAT 60.080 41.667 0.00 0.00 42.53 1.78
3057 3209 8.072567 CACAGTTTCTCCAGAAAAGTAAATGAG 58.927 37.037 3.27 0.00 44.58 2.90
3065 3217 4.211374 CGTACCACAGTTTCTCCAGAAAAG 59.789 45.833 3.27 2.94 44.58 2.27
3122 3274 3.012518 CACAAGGAGAAGGTTATGCCAG 58.987 50.000 0.00 0.00 40.61 4.85
3166 3320 3.732212 TCGCAAGGATAAGATCATGGTG 58.268 45.455 0.00 0.00 38.47 4.17
3169 3323 4.001652 AGCATCGCAAGGATAAGATCATG 58.998 43.478 0.00 0.00 32.85 3.07
3178 3332 3.482156 AGTATCAAGCATCGCAAGGAT 57.518 42.857 0.00 0.00 35.09 3.24
3224 3378 9.241919 TCTGATATGAAGCATTGTTAGGAAAAA 57.758 29.630 0.00 0.00 0.00 1.94
3306 3460 6.683537 TGGTCTATCCAAGAAGAGAGGAATA 58.316 40.000 0.00 0.00 44.12 1.75
3374 3528 5.179368 TCTCGATTTTCACATTCACTTGGTC 59.821 40.000 0.00 0.00 0.00 4.02
3378 3532 5.869344 TCGATCTCGATTTTCACATTCACTT 59.131 36.000 0.00 0.00 44.22 3.16
3471 3625 3.123959 GCATGAACATTCCACATTTGTGC 59.876 43.478 5.15 0.00 44.34 4.57
3481 3635 2.170166 TCCCACTTGCATGAACATTCC 58.830 47.619 6.60 0.00 0.00 3.01
3527 3681 1.906574 GTGGACAGATCACCCCAGTAA 59.093 52.381 0.00 0.00 0.00 2.24
3535 3689 2.839486 TTCACCTGTGGACAGATCAC 57.161 50.000 8.41 0.00 46.59 3.06
3538 3692 3.808618 GCTTCTTTCACCTGTGGACAGAT 60.809 47.826 8.41 0.00 46.59 2.90
3542 3696 2.262423 AGCTTCTTTCACCTGTGGAC 57.738 50.000 0.00 0.00 0.00 4.02
3566 3720 1.407258 ACGGCTTTTAGCTTGTTTGCA 59.593 42.857 0.00 0.00 41.99 4.08
3633 3787 2.030717 CGATCATCTTCGGGTCTGGTAG 60.031 54.545 0.00 0.00 35.50 3.18
3655 3809 1.266989 CTTCCTCCACGGCTTGTTTTC 59.733 52.381 0.00 0.00 0.00 2.29
3656 3810 1.318576 CTTCCTCCACGGCTTGTTTT 58.681 50.000 0.00 0.00 0.00 2.43
3701 3855 1.502527 ATTCCTGGGGGCCAAACGTA 61.503 55.000 4.39 0.00 30.80 3.57
3734 3888 0.889186 ACAACTGGATGCCCGTGTTC 60.889 55.000 0.00 0.00 32.17 3.18
3833 3987 3.130869 AGAACTGCACACAAATTCTTGCA 59.869 39.130 0.00 0.00 42.60 4.08
3843 3997 3.814625 TGGATTTACAGAACTGCACACA 58.185 40.909 1.46 0.00 0.00 3.72
3879 4437 7.390027 GTCATCCTCTGGTAATGTGCTATATT 58.610 38.462 0.00 0.00 0.00 1.28
3902 4460 2.301870 TGTGACCCATGTTACAGAGGTC 59.698 50.000 22.26 22.26 45.91 3.85
3973 4531 0.737715 GTCAGAGTAAGCGGCTGGTG 60.738 60.000 1.81 0.00 0.00 4.17
3978 4536 1.291132 GGATTGTCAGAGTAAGCGGC 58.709 55.000 0.00 0.00 0.00 6.53
4006 4564 0.179073 AGCATCTGCATCCGGTACAC 60.179 55.000 0.00 0.00 45.16 2.90
4181 4739 2.000701 CCACATCCCCCAGCACCTA 61.001 63.158 0.00 0.00 0.00 3.08
4280 4838 1.066502 GTGAAGAACTGGAGGAGCCTC 60.067 57.143 8.03 8.03 42.04 4.70
4374 4948 1.448540 GTGATGGTCTGTGAGGCCG 60.449 63.158 0.00 0.00 44.85 6.13
4414 4988 1.153489 CACCCAGCAGGAGATCGTG 60.153 63.158 0.00 0.00 39.89 4.35
4415 4989 3.023949 GCACCCAGCAGGAGATCGT 62.024 63.158 0.00 0.00 44.79 3.73
4565 5139 1.076559 TCGGTGGCTCCCTAATCGA 60.077 57.895 0.00 0.00 0.00 3.59
4658 5232 3.382832 CGGCTCCGGGAAGTCAGT 61.383 66.667 0.00 0.00 35.56 3.41
4663 5237 3.854669 AGATGCGGCTCCGGGAAG 61.855 66.667 10.57 0.00 40.19 3.46
4710 5284 3.069778 GGACCTGACAGGACCCAC 58.930 66.667 28.56 12.38 43.16 4.61
4719 5293 2.550830 TTCTGAGCTTTGGACCTGAC 57.449 50.000 0.00 0.00 0.00 3.51
4720 5294 2.639347 TGATTCTGAGCTTTGGACCTGA 59.361 45.455 0.00 0.00 0.00 3.86
4721 5295 3.063510 TGATTCTGAGCTTTGGACCTG 57.936 47.619 0.00 0.00 0.00 4.00
4722 5296 3.683802 CTTGATTCTGAGCTTTGGACCT 58.316 45.455 0.00 0.00 0.00 3.85
4723 5297 2.163211 GCTTGATTCTGAGCTTTGGACC 59.837 50.000 0.00 0.00 36.01 4.46
4724 5298 2.816087 TGCTTGATTCTGAGCTTTGGAC 59.184 45.455 11.88 0.00 39.60 4.02
4725 5299 3.144657 TGCTTGATTCTGAGCTTTGGA 57.855 42.857 11.88 0.00 39.60 3.53
4726 5300 3.928727 TTGCTTGATTCTGAGCTTTGG 57.071 42.857 11.88 0.00 39.60 3.28
4727 5301 7.597743 AGTTAAATTGCTTGATTCTGAGCTTTG 59.402 33.333 11.88 0.00 39.60 2.77
4728 5302 7.664758 AGTTAAATTGCTTGATTCTGAGCTTT 58.335 30.769 11.88 8.52 39.60 3.51
4729 5303 7.224522 AGTTAAATTGCTTGATTCTGAGCTT 57.775 32.000 11.88 3.83 39.60 3.74
4730 5304 6.830873 AGTTAAATTGCTTGATTCTGAGCT 57.169 33.333 11.88 0.00 39.60 4.09
4731 5305 6.969473 GGTAGTTAAATTGCTTGATTCTGAGC 59.031 38.462 5.88 5.88 39.33 4.26
4732 5306 8.044060 TGGTAGTTAAATTGCTTGATTCTGAG 57.956 34.615 0.00 0.00 0.00 3.35
4733 5307 7.882791 TCTGGTAGTTAAATTGCTTGATTCTGA 59.117 33.333 0.00 0.00 0.00 3.27
4734 5308 8.044060 TCTGGTAGTTAAATTGCTTGATTCTG 57.956 34.615 0.00 0.00 0.00 3.02
4735 5309 7.148171 GCTCTGGTAGTTAAATTGCTTGATTCT 60.148 37.037 0.00 0.00 0.00 2.40
4736 5310 6.969473 GCTCTGGTAGTTAAATTGCTTGATTC 59.031 38.462 0.00 0.00 0.00 2.52
4737 5311 6.434028 TGCTCTGGTAGTTAAATTGCTTGATT 59.566 34.615 0.00 0.00 0.00 2.57
4738 5312 5.945784 TGCTCTGGTAGTTAAATTGCTTGAT 59.054 36.000 0.00 0.00 0.00 2.57
4739 5313 5.312895 TGCTCTGGTAGTTAAATTGCTTGA 58.687 37.500 0.00 0.00 0.00 3.02
4740 5314 5.627499 TGCTCTGGTAGTTAAATTGCTTG 57.373 39.130 0.00 0.00 0.00 4.01
4741 5315 5.534654 TGTTGCTCTGGTAGTTAAATTGCTT 59.465 36.000 0.00 0.00 0.00 3.91
4742 5316 5.070001 TGTTGCTCTGGTAGTTAAATTGCT 58.930 37.500 0.00 0.00 0.00 3.91
4743 5317 5.371115 TGTTGCTCTGGTAGTTAAATTGC 57.629 39.130 0.00 0.00 0.00 3.56
4744 5318 8.816640 AATTTGTTGCTCTGGTAGTTAAATTG 57.183 30.769 0.00 0.00 0.00 2.32
4747 5321 8.573035 CCTAAATTTGTTGCTCTGGTAGTTAAA 58.427 33.333 0.00 0.00 0.00 1.52
4748 5322 7.940137 TCCTAAATTTGTTGCTCTGGTAGTTAA 59.060 33.333 0.00 0.00 0.00 2.01
4749 5323 7.455058 TCCTAAATTTGTTGCTCTGGTAGTTA 58.545 34.615 0.00 0.00 0.00 2.24
4750 5324 6.303839 TCCTAAATTTGTTGCTCTGGTAGTT 58.696 36.000 0.00 0.00 0.00 2.24
4751 5325 5.876357 TCCTAAATTTGTTGCTCTGGTAGT 58.124 37.500 0.00 0.00 0.00 2.73
4752 5326 5.355350 CCTCCTAAATTTGTTGCTCTGGTAG 59.645 44.000 0.00 0.00 0.00 3.18
4753 5327 5.013704 TCCTCCTAAATTTGTTGCTCTGGTA 59.986 40.000 0.00 0.00 0.00 3.25
4754 5328 4.082125 CCTCCTAAATTTGTTGCTCTGGT 58.918 43.478 0.00 0.00 0.00 4.00
4755 5329 4.335416 TCCTCCTAAATTTGTTGCTCTGG 58.665 43.478 0.00 0.00 0.00 3.86
4756 5330 5.248640 TCTCCTCCTAAATTTGTTGCTCTG 58.751 41.667 0.00 0.00 0.00 3.35
4757 5331 5.505181 TCTCCTCCTAAATTTGTTGCTCT 57.495 39.130 0.00 0.00 0.00 4.09
4758 5332 5.473504 TGTTCTCCTCCTAAATTTGTTGCTC 59.526 40.000 0.00 0.00 0.00 4.26
4759 5333 5.385198 TGTTCTCCTCCTAAATTTGTTGCT 58.615 37.500 0.00 0.00 0.00 3.91
4760 5334 5.335976 CCTGTTCTCCTCCTAAATTTGTTGC 60.336 44.000 0.00 0.00 0.00 4.17
4761 5335 6.003950 TCCTGTTCTCCTCCTAAATTTGTTG 58.996 40.000 0.00 0.00 0.00 3.33
4762 5336 6.200878 TCCTGTTCTCCTCCTAAATTTGTT 57.799 37.500 0.00 0.00 0.00 2.83
4763 5337 5.804771 GCTCCTGTTCTCCTCCTAAATTTGT 60.805 44.000 0.00 0.00 0.00 2.83
4764 5338 4.637977 GCTCCTGTTCTCCTCCTAAATTTG 59.362 45.833 0.00 0.00 0.00 2.32
4765 5339 4.538089 AGCTCCTGTTCTCCTCCTAAATTT 59.462 41.667 0.00 0.00 0.00 1.82
4766 5340 4.107820 AGCTCCTGTTCTCCTCCTAAATT 58.892 43.478 0.00 0.00 0.00 1.82
4767 5341 3.730269 AGCTCCTGTTCTCCTCCTAAAT 58.270 45.455 0.00 0.00 0.00 1.40
4768 5342 3.191888 AGCTCCTGTTCTCCTCCTAAA 57.808 47.619 0.00 0.00 0.00 1.85
4769 5343 2.930109 AGCTCCTGTTCTCCTCCTAA 57.070 50.000 0.00 0.00 0.00 2.69
4770 5344 2.043115 TGAAGCTCCTGTTCTCCTCCTA 59.957 50.000 0.00 0.00 0.00 2.94
4771 5345 1.203237 TGAAGCTCCTGTTCTCCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
4772 5346 1.270907 TGAAGCTCCTGTTCTCCTCC 58.729 55.000 0.00 0.00 0.00 4.30
4773 5347 3.070748 GTTTGAAGCTCCTGTTCTCCTC 58.929 50.000 0.00 0.00 0.00 3.71
4774 5348 2.708325 AGTTTGAAGCTCCTGTTCTCCT 59.292 45.455 0.00 0.00 0.00 3.69
4775 5349 3.133141 AGTTTGAAGCTCCTGTTCTCC 57.867 47.619 0.00 0.00 0.00 3.71
4776 5350 4.249661 CCTAGTTTGAAGCTCCTGTTCTC 58.750 47.826 0.00 0.00 0.00 2.87
4777 5351 3.008485 CCCTAGTTTGAAGCTCCTGTTCT 59.992 47.826 0.00 0.00 0.00 3.01
4778 5352 3.244596 ACCCTAGTTTGAAGCTCCTGTTC 60.245 47.826 0.00 0.00 0.00 3.18
4779 5353 2.711547 ACCCTAGTTTGAAGCTCCTGTT 59.288 45.455 0.00 0.00 0.00 3.16
4780 5354 2.339769 ACCCTAGTTTGAAGCTCCTGT 58.660 47.619 0.00 0.00 0.00 4.00
4781 5355 3.425162 AACCCTAGTTTGAAGCTCCTG 57.575 47.619 0.00 0.00 29.61 3.86
4782 5356 5.501156 CAATAACCCTAGTTTGAAGCTCCT 58.499 41.667 0.00 0.00 37.42 3.69
4783 5357 4.096532 GCAATAACCCTAGTTTGAAGCTCC 59.903 45.833 0.00 0.00 37.42 4.70
4784 5358 4.944317 AGCAATAACCCTAGTTTGAAGCTC 59.056 41.667 0.00 0.00 37.42 4.09
4785 5359 4.923415 AGCAATAACCCTAGTTTGAAGCT 58.077 39.130 0.00 0.00 37.42 3.74
4786 5360 6.598064 TCTTAGCAATAACCCTAGTTTGAAGC 59.402 38.462 0.00 0.00 37.42 3.86
4787 5361 8.561738 TTCTTAGCAATAACCCTAGTTTGAAG 57.438 34.615 0.00 0.00 37.42 3.02
4788 5362 8.927675 TTTCTTAGCAATAACCCTAGTTTGAA 57.072 30.769 0.00 0.00 37.42 2.69
4789 5363 8.956426 CATTTCTTAGCAATAACCCTAGTTTGA 58.044 33.333 0.00 0.00 37.42 2.69
4790 5364 8.190784 CCATTTCTTAGCAATAACCCTAGTTTG 58.809 37.037 0.00 0.00 37.42 2.93
4791 5365 7.342026 CCCATTTCTTAGCAATAACCCTAGTTT 59.658 37.037 0.00 0.00 37.42 2.66
4792 5366 6.833933 CCCATTTCTTAGCAATAACCCTAGTT 59.166 38.462 0.00 0.00 40.15 2.24
4793 5367 6.365520 CCCATTTCTTAGCAATAACCCTAGT 58.634 40.000 0.00 0.00 0.00 2.57
4794 5368 5.770162 CCCCATTTCTTAGCAATAACCCTAG 59.230 44.000 0.00 0.00 0.00 3.02
4795 5369 5.433712 TCCCCATTTCTTAGCAATAACCCTA 59.566 40.000 0.00 0.00 0.00 3.53
4796 5370 4.231890 TCCCCATTTCTTAGCAATAACCCT 59.768 41.667 0.00 0.00 0.00 4.34
4797 5371 4.542697 TCCCCATTTCTTAGCAATAACCC 58.457 43.478 0.00 0.00 0.00 4.11
4798 5372 6.538945 TTTCCCCATTTCTTAGCAATAACC 57.461 37.500 0.00 0.00 0.00 2.85
4799 5373 9.750125 CTATTTTCCCCATTTCTTAGCAATAAC 57.250 33.333 0.00 0.00 0.00 1.89
4800 5374 8.923270 CCTATTTTCCCCATTTCTTAGCAATAA 58.077 33.333 0.00 0.00 0.00 1.40
4801 5375 7.508977 CCCTATTTTCCCCATTTCTTAGCAATA 59.491 37.037 0.00 0.00 0.00 1.90
4802 5376 6.327365 CCCTATTTTCCCCATTTCTTAGCAAT 59.673 38.462 0.00 0.00 0.00 3.56
4803 5377 5.660864 CCCTATTTTCCCCATTTCTTAGCAA 59.339 40.000 0.00 0.00 0.00 3.91
4804 5378 5.208121 CCCTATTTTCCCCATTTCTTAGCA 58.792 41.667 0.00 0.00 0.00 3.49
4805 5379 5.791336 CCCTATTTTCCCCATTTCTTAGC 57.209 43.478 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.