AutoCloner

Multiple sequence alignment - TraesCS1B01G248000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G248000	chr1B	100.000	4456	0	0	1	4456	439027034	439031489	0.000000e+00	8229.0
1	TraesCS1B01G248000	chr1D	91.909	2064	95	23	1496	3537	325962611	325964624	0.000000e+00	2820.0
2	TraesCS1B01G248000	chr1D	93.206	574	29	8	811	1380	325961949	325962516	0.000000e+00	835.0
3	TraesCS1B01G248000	chr1A	93.042	1897	99	15	1697	3573	416551638	416549755	0.000000e+00	2741.0
4	TraesCS1B01G248000	chr1A	86.055	545	46	9	3938	4456	416549385	416548845	3.890000e-155	558.0
5	TraesCS1B01G248000	chr1A	91.262	309	20	7	811	1113	416552737	416552430	8.920000e-112	414.0
6	TraesCS1B01G248000	chr1A	84.270	445	40	11	1218	1639	416552074	416551637	1.490000e-109	407.0
7	TraesCS1B01G248000	chr1A	91.051	257	20	3	520	775	416680141	416679887	1.190000e-90	344.0
8	TraesCS1B01G248000	chr1A	100.000	38	0	0	1757	1794	23309895	23309932	2.220000e-08	71.3
9	TraesCS1B01G248000	chr1A	100.000	38	0	0	1757	1794	572350322	572350359	2.220000e-08	71.3
10	TraesCS1B01G248000	chr7D	81.004	458	60	20	119	562	417936097	417936541	5.520000e-89	339.0
11	TraesCS1B01G248000	chr7D	75.692	650	104	44	127	737	418072937	418073571	4.390000e-70	276.0
12	TraesCS1B01G248000	chr7D	79.762	336	50	15	414	737	417936430	417936759	1.250000e-55	228.0
13	TraesCS1B01G248000	chr7D	100.000	38	0	0	1757	1794	632990846	632990883	2.220000e-08	71.3
14	TraesCS1B01G248000	chr3B	76.335	562	105	22	2775	3313	761005147	761005703	4.390000e-70	276.0
15	TraesCS1B01G248000	chr3B	74.327	557	120	19	2775	3316	760480194	760479646	9.710000e-52	215.0
16	TraesCS1B01G248000	chr3B	80.392	153	28	2	3946	4097	494816607	494816456	1.010000e-21	115.0
17	TraesCS1B01G248000	chr3A	74.373	558	118	19	2775	3316	705309853	705309305	9.710000e-52	215.0
18	TraesCS1B01G248000	chrUn	74.040	547	115	17	2775	3313	131951190	131951717	9.780000e-47	198.0
19	TraesCS1B01G248000	chr7B	80.392	153	28	2	3946	4097	354211314	354211465	1.010000e-21	115.0
20	TraesCS1B01G248000	chr3D	92.405	79	6	0	2775	2853	572553860	572553782	3.640000e-21	113.0
21	TraesCS1B01G248000	chr3D	78.832	137	27	2	3946	4081	452104544	452104409	1.710000e-14	91.6
22	TraesCS1B01G248000	chr7A	93.878	49	1	2	1746	1792	57610168	57610120	6.180000e-09	73.1
23	TraesCS1B01G248000	chr4A	100.000	38	0	0	1757	1794	536208021	536207984	2.220000e-08	71.3
24	TraesCS1B01G248000	chr4A	100.000	38	0	0	1757	1794	614910302	614910265	2.220000e-08	71.3
25	TraesCS1B01G248000	chr4B	88.235	51	6	0	1751	1801	167950931	167950981	1.340000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G248000	chr1B	439027034	439031489	4455	False	8229.0	8229	100.00000	1	4456	1	chr1B.!!$F1	4455
1	TraesCS1B01G248000	chr1D	325961949	325964624	2675	False	1827.5	2820	92.55750	811	3537	2	chr1D.!!$F1	2726
2	TraesCS1B01G248000	chr1A	416548845	416552737	3892	True	1030.0	2741	88.65725	811	4456	4	chr1A.!!$R2	3645
3	TraesCS1B01G248000	chr7D	417936097	417936759	662	False	283.5	339	80.38300	119	737	2	chr7D.!!$F3	618
4	TraesCS1B01G248000	chr7D	418072937	418073571	634	False	276.0	276	75.69200	127	737	1	chr7D.!!$F1	610
5	TraesCS1B01G248000	chr3B	761005147	761005703	556	False	276.0	276	76.33500	2775	3313	1	chr3B.!!$F1	538
6	TraesCS1B01G248000	chr3B	760479646	760480194	548	True	215.0	215	74.32700	2775	3316	1	chr3B.!!$R2	541
7	TraesCS1B01G248000	chr3A	705309305	705309853	548	True	215.0	215	74.37300	2775	3316	1	chr3A.!!$R1	541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
809	879	0.031043	TTCGACGCCTGTTTCTCGAA	59.969	50.000	0.00	41.55	3.71	F
1351	1680	0.248498	TTCTTAGATCTCGCACGCGG	60.248	55.000	12.47	40.25	6.46	F
1418	1765	1.079405	TCACGGATCAAACGCCCTC	60.079	57.895	0.00	34.00	4.30	F
2513	2893	1.148310	GTATCCACCGCCGATCAATG	58.852	55.000	0.00	0.00	2.82	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2570	2952	0.745845	ATGTCTTGGCCTCGCATCAC	60.746	55.000	3.32	0.00	3.06	R
3093	3547	1.303561	AGGCGCCTTGAATTGCTCA	60.304	52.632	27.08	0.00	4.26	R
3322	3776	8.109634	AGGAAAAACTGACATAATATCACAGGT	58.890	33.333	0.00	33.57	4.00	R
3698	4168	0.029567	CGAGTAGAAGTAGGCGCAGG	59.970	60.000	10.83	0.00	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.720494	TAACAGGATGGCTGCGGA	58.280	55.556	0.00	0.00	43.62	5.54
18	19	1.220749	TAACAGGATGGCTGCGGAC	59.779	57.895	0.00	0.00	43.62	4.79
19	20	2.252072	TAACAGGATGGCTGCGGACC	62.252	60.000	0.00	0.00	43.62	4.46
36	37	4.499633	CGCCCGCCCCTGGTAAAT	62.500	66.667	0.00	0.00	0.00	1.40
37	38	2.833121	GCCCGCCCCTGGTAAATG	60.833	66.667	0.00	0.00	0.00	2.32
38	39	2.123897	CCCGCCCCTGGTAAATGG	60.124	66.667	0.00	0.00	0.00	3.16
39	40	2.123897	CCGCCCCTGGTAAATGGG	60.124	66.667	0.00	0.00	42.98	4.00
42	43	3.003230	CCCCTGGTAAATGGGCGA	58.997	61.111	0.00	0.00	42.03	5.54
43	44	1.152963	CCCCTGGTAAATGGGCGAG	60.153	63.158	0.00	0.00	42.03	5.03
44	45	1.823899	CCCTGGTAAATGGGCGAGC	60.824	63.158	0.00	0.00	36.61	5.03
45	46	1.077787	CCTGGTAAATGGGCGAGCA	60.078	57.895	0.00	0.00	0.00	4.26
46	47	0.679640	CCTGGTAAATGGGCGAGCAA	60.680	55.000	0.00	0.00	0.00	3.91
47	48	1.392589	CTGGTAAATGGGCGAGCAAT	58.607	50.000	0.00	0.00	0.00	3.56
48	49	1.750778	CTGGTAAATGGGCGAGCAATT	59.249	47.619	0.00	0.00	0.00	2.32
49	50	1.476085	TGGTAAATGGGCGAGCAATTG	59.524	47.619	0.00	0.00	0.00	2.32
50	51	1.202405	GGTAAATGGGCGAGCAATTGG	60.202	52.381	7.72	0.00	0.00	3.16
51	52	0.459489	TAAATGGGCGAGCAATTGGC	59.541	50.000	7.72	1.92	45.30	4.52
61	62	2.474266	CAATTGGCGTGACGACGG	59.526	61.111	10.10	0.00	46.20	4.79
62	63	2.024868	CAATTGGCGTGACGACGGA	61.025	57.895	10.10	0.00	46.20	4.69
63	64	1.301087	AATTGGCGTGACGACGGAA	60.301	52.632	10.10	0.00	46.20	4.30
64	65	0.672401	AATTGGCGTGACGACGGAAT	60.672	50.000	10.10	0.00	46.20	3.01
65	66	0.173935	ATTGGCGTGACGACGGAATA	59.826	50.000	10.10	0.00	46.20	1.75
66	67	0.457166	TTGGCGTGACGACGGAATAG	60.457	55.000	10.10	0.00	46.20	1.73
67	68	1.588139	GGCGTGACGACGGAATAGG	60.588	63.158	10.10	0.00	46.20	2.57
68	69	1.430632	GCGTGACGACGGAATAGGA	59.569	57.895	10.10	0.00	46.20	2.94
69	70	0.591741	GCGTGACGACGGAATAGGAG	60.592	60.000	10.10	0.00	46.20	3.69
70	71	0.591741	CGTGACGACGGAATAGGAGC	60.592	60.000	0.00	0.00	42.18	4.70
71	72	0.454600	GTGACGACGGAATAGGAGCA	59.545	55.000	0.00	0.00	0.00	4.26
72	73	0.454600	TGACGACGGAATAGGAGCAC	59.545	55.000	0.00	0.00	0.00	4.40
73	74	0.739561	GACGACGGAATAGGAGCACT	59.260	55.000	0.00	0.00	0.00	4.40
74	75	0.739561	ACGACGGAATAGGAGCACTC	59.260	55.000	0.00	0.00	0.00	3.51
75	76	0.738975	CGACGGAATAGGAGCACTCA	59.261	55.000	0.00	0.00	0.00	3.41
76	77	1.268794	CGACGGAATAGGAGCACTCAG	60.269	57.143	0.00	0.00	0.00	3.35
77	78	0.461961	ACGGAATAGGAGCACTCAGC	59.538	55.000	0.00	0.00	46.19	4.26
87	88	2.082354	GCACTCAGCTAAACCTCGC	58.918	57.895	0.00	0.00	41.15	5.03
88	89	0.670546	GCACTCAGCTAAACCTCGCA	60.671	55.000	0.00	0.00	41.15	5.10
89	90	1.071605	CACTCAGCTAAACCTCGCAC	58.928	55.000	0.00	0.00	0.00	5.34
90	91	0.969894	ACTCAGCTAAACCTCGCACT	59.030	50.000	0.00	0.00	0.00	4.40
91	92	2.094700	CACTCAGCTAAACCTCGCACTA	60.095	50.000	0.00	0.00	0.00	2.74
92	93	2.094649	ACTCAGCTAAACCTCGCACTAC	60.095	50.000	0.00	0.00	0.00	2.73
93	94	1.203994	TCAGCTAAACCTCGCACTACC	59.796	52.381	0.00	0.00	0.00	3.18
94	95	1.204941	CAGCTAAACCTCGCACTACCT	59.795	52.381	0.00	0.00	0.00	3.08
95	96	2.426024	CAGCTAAACCTCGCACTACCTA	59.574	50.000	0.00	0.00	0.00	3.08
96	97	3.094572	AGCTAAACCTCGCACTACCTAA	58.905	45.455	0.00	0.00	0.00	2.69
97	98	3.512724	AGCTAAACCTCGCACTACCTAAA	59.487	43.478	0.00	0.00	0.00	1.85
98	99	4.020839	AGCTAAACCTCGCACTACCTAAAA	60.021	41.667	0.00	0.00	0.00	1.52
99	100	4.692155	GCTAAACCTCGCACTACCTAAAAA	59.308	41.667	0.00	0.00	0.00	1.94
118	119	5.830000	AAAAAGAGTTAAAACCTCGCACT	57.170	34.783	0.00	0.00	0.00	4.40
119	120	5.830000	AAAAGAGTTAAAACCTCGCACTT	57.170	34.783	0.00	0.00	0.00	3.16
120	121	5.830000	AAAGAGTTAAAACCTCGCACTTT	57.170	34.783	0.00	0.00	0.00	2.66
121	122	5.830000	AAGAGTTAAAACCTCGCACTTTT	57.170	34.783	0.00	0.00	0.00	2.27
122	123	5.419760	AGAGTTAAAACCTCGCACTTTTC	57.580	39.130	0.00	0.00	0.00	2.29
123	124	4.275196	AGAGTTAAAACCTCGCACTTTTCC	59.725	41.667	0.00	0.00	0.00	3.13
124	125	3.002965	AGTTAAAACCTCGCACTTTTCCG	59.997	43.478	0.00	0.00	0.00	4.30
125	126	0.666374	AAAACCTCGCACTTTTCCGG	59.334	50.000	0.00	0.00	0.00	5.14
126	127	1.792118	AAACCTCGCACTTTTCCGGC	61.792	55.000	0.00	0.00	0.00	6.13
127	128	2.668212	CCTCGCACTTTTCCGGCA	60.668	61.111	0.00	0.00	0.00	5.69
128	129	2.258013	CCTCGCACTTTTCCGGCAA	61.258	57.895	0.00	0.00	0.00	4.52
129	130	1.586154	CCTCGCACTTTTCCGGCAAT	61.586	55.000	0.00	0.00	0.00	3.56
130	131	0.179189	CTCGCACTTTTCCGGCAATC	60.179	55.000	0.00	0.00	0.00	2.67
131	132	1.154035	CGCACTTTTCCGGCAATCC	60.154	57.895	0.00	0.00	0.00	3.01
140	141	2.341846	TCCGGCAATCCCTATTTGAC	57.658	50.000	0.00	0.00	0.00	3.18
141	142	1.562008	TCCGGCAATCCCTATTTGACA	59.438	47.619	0.00	0.00	31.22	3.58
151	152	1.635844	CTATTTGACACGCGTAGGCA	58.364	50.000	13.44	12.72	39.92	4.75
153	154	2.303163	ATTTGACACGCGTAGGCATA	57.697	45.000	13.44	10.72	39.92	3.14
158	159	3.004171	TGACACGCGTAGGCATAAAAAT	58.996	40.909	13.44	0.00	39.92	1.82
162	163	2.029970	ACGCGTAGGCATAAAAATGACG	59.970	45.455	11.67	0.00	39.92	4.35
168	169	2.098117	AGGCATAAAAATGACGCAGCTC	59.902	45.455	0.00	0.00	33.96	4.09
183	184	1.886777	GCTCCGCTGAAGCTCATCC	60.887	63.158	0.10	0.00	39.32	3.51
301	313	9.524106	TTCTATTTCTTTTCTTTTCGTTTTCCC	57.476	29.630	0.00	0.00	0.00	3.97
302	314	8.688151	TCTATTTCTTTTCTTTTCGTTTTCCCA	58.312	29.630	0.00	0.00	0.00	4.37
305	317	8.554835	TTTCTTTTCTTTTCGTTTTCCCATTT	57.445	26.923	0.00	0.00	0.00	2.32
308	321	6.912203	TTTCTTTTCGTTTTCCCATTTTCC	57.088	33.333	0.00	0.00	0.00	3.13
309	322	4.951254	TCTTTTCGTTTTCCCATTTTCCC	58.049	39.130	0.00	0.00	0.00	3.97
310	323	4.406003	TCTTTTCGTTTTCCCATTTTCCCA	59.594	37.500	0.00	0.00	0.00	4.37
314	327	5.297569	TCGTTTTCCCATTTTCCCATTTT	57.702	34.783	0.00	0.00	0.00	1.82
315	328	6.420913	TCGTTTTCCCATTTTCCCATTTTA	57.579	33.333	0.00	0.00	0.00	1.52
324	337	9.874195	TCCCATTTTCCCATTTTATTTTTCTTT	57.126	25.926	0.00	0.00	0.00	2.52
355	368	8.746052	TTCCCTGTATTATACAAAGTCCATTG	57.254	34.615	6.52	0.00	38.38	2.82
356	369	6.770785	TCCCTGTATTATACAAAGTCCATTGC	59.229	38.462	6.52	0.00	38.38	3.56
424	438	8.147172	CAGCGTAATTTAAGAATTTGTTCAACG	58.853	33.333	0.00	0.00	36.82	4.10
453	468	9.716531	TTTTGCAAAATATTCAATGTGTATCCA	57.283	25.926	20.46	0.00	0.00	3.41
454	469	9.887629	TTTGCAAAATATTCAATGTGTATCCAT	57.112	25.926	10.02	0.00	0.00	3.41
492	558	7.096106	CGTATTTCTGCAAAATGTTCAATGTGT	60.096	33.333	13.65	0.00	0.00	3.72
495	561	7.640616	TTCTGCAAAATGTTCAATGTGTATG	57.359	32.000	0.00	0.00	0.00	2.39
497	563	5.295152	TGCAAAATGTTCAATGTGTATGCA	58.705	33.333	0.00	0.00	37.70	3.96
510	576	8.333908	TCAATGTGTATGCAAAATTTGTTCAAC	58.666	29.630	7.60	2.42	0.00	3.18
544	611	8.103948	ACAAAAATGTTCAATGTGTTTCCAAA	57.896	26.923	0.00	0.00	0.00	3.28
556	623	9.367717	CAATGTGTTTCCAAAATTTATTCAACG	57.632	29.630	0.00	0.00	0.00	4.10
579	646	7.674564	ACGTATATTGCAAAATTGTTCAATGC	58.325	30.769	1.71	1.43	37.52	3.56
585	652	5.913637	TGCAAAATTGTTCAATGCGTATTG	58.086	33.333	18.88	18.88	44.03	1.90
599	666	3.911365	TGCGTATTGAAAATTGTTCAGCG	59.089	39.130	6.14	6.14	0.00	5.18
713	780	4.475944	CAGGAAGTTCCAATAAAACGCAG	58.524	43.478	23.87	0.00	39.61	5.18
717	784	5.980715	GGAAGTTCCAATAAAACGCAGAAAA	59.019	36.000	17.44	0.00	36.28	2.29
719	786	7.170828	GGAAGTTCCAATAAAACGCAGAAAAAT	59.829	33.333	17.44	0.00	36.28	1.82
720	787	9.187455	GAAGTTCCAATAAAACGCAGAAAAATA	57.813	29.630	0.00	0.00	0.00	1.40
771	841	3.679824	AAAAACTAGCGGTAGTGAGCT	57.320	42.857	26.63	9.37	46.53	4.09
772	842	3.679824	AAAACTAGCGGTAGTGAGCTT	57.320	42.857	26.63	14.76	44.15	3.74
773	843	2.943449	AACTAGCGGTAGTGAGCTTC	57.057	50.000	26.63	0.00	44.15	3.86
774	844	2.131776	ACTAGCGGTAGTGAGCTTCT	57.868	50.000	25.50	0.00	44.15	2.85
775	845	1.746220	ACTAGCGGTAGTGAGCTTCTG	59.254	52.381	25.50	0.00	44.15	3.02
776	846	0.456221	TAGCGGTAGTGAGCTTCTGC	59.544	55.000	0.00	0.00	44.15	4.26
777	847	2.161486	GCGGTAGTGAGCTTCTGCG	61.161	63.158	0.00	0.00	45.42	5.18
778	848	1.506718	CGGTAGTGAGCTTCTGCGA	59.493	57.895	0.00	0.00	45.42	5.10
779	849	0.109272	CGGTAGTGAGCTTCTGCGAA	60.109	55.000	0.00	0.00	45.42	4.70
780	850	1.634702	GGTAGTGAGCTTCTGCGAAG	58.365	55.000	12.17	12.17	45.42	3.79
781	851	1.634702	GTAGTGAGCTTCTGCGAAGG	58.365	55.000	16.39	3.30	45.42	3.46
782	852	1.067495	GTAGTGAGCTTCTGCGAAGGT	60.067	52.381	18.32	18.32	45.42	3.50
783	853	1.257743	AGTGAGCTTCTGCGAAGGTA	58.742	50.000	18.30	8.35	45.42	3.08
784	854	1.067495	AGTGAGCTTCTGCGAAGGTAC	60.067	52.381	18.30	15.96	45.42	3.34
785	855	0.966179	TGAGCTTCTGCGAAGGTACA	59.034	50.000	18.30	15.28	45.42	2.90
786	856	1.067565	TGAGCTTCTGCGAAGGTACAG	60.068	52.381	18.30	0.00	45.42	2.74
787	857	0.390472	AGCTTCTGCGAAGGTACAGC	60.390	55.000	17.28	5.69	45.42	4.40
788	858	0.390472	GCTTCTGCGAAGGTACAGCT	60.390	55.000	16.39	0.00	33.80	4.24
789	859	1.354040	CTTCTGCGAAGGTACAGCTG	58.646	55.000	13.48	13.48	33.80	4.24
790	860	0.679505	TTCTGCGAAGGTACAGCTGT	59.320	50.000	25.12	25.12	33.80	4.40
791	861	0.679505	TCTGCGAAGGTACAGCTGTT	59.320	50.000	27.06	6.57	33.80	3.16
792	862	1.071605	CTGCGAAGGTACAGCTGTTC	58.928	55.000	27.06	20.31	0.00	3.18
793	863	0.666274	TGCGAAGGTACAGCTGTTCG	60.666	55.000	27.06	26.78	43.62	3.95
794	864	0.388134	GCGAAGGTACAGCTGTTCGA	60.388	55.000	32.17	12.69	43.50	3.71
795	865	1.337821	CGAAGGTACAGCTGTTCGAC	58.662	55.000	26.78	18.71	43.50	4.20
796	866	1.337821	GAAGGTACAGCTGTTCGACG	58.662	55.000	27.06	0.00	0.00	5.12
797	867	0.666577	AAGGTACAGCTGTTCGACGC	60.667	55.000	27.06	11.03	0.00	5.19
798	868	2.092882	GGTACAGCTGTTCGACGCC	61.093	63.158	27.06	13.54	0.00	5.68
799	869	1.080705	GTACAGCTGTTCGACGCCT	60.081	57.895	27.06	0.00	0.00	5.52
800	870	1.080772	TACAGCTGTTCGACGCCTG	60.081	57.895	27.06	0.00	0.00	4.85
801	871	1.802337	TACAGCTGTTCGACGCCTGT	61.802	55.000	27.06	10.71	36.48	4.00
802	872	1.956170	CAGCTGTTCGACGCCTGTT	60.956	57.895	5.25	0.00	0.00	3.16
803	873	1.227556	AGCTGTTCGACGCCTGTTT	60.228	52.632	0.00	0.00	0.00	2.83
804	874	1.204312	GCTGTTCGACGCCTGTTTC	59.796	57.895	0.00	0.00	0.00	2.78
805	875	1.222115	GCTGTTCGACGCCTGTTTCT	61.222	55.000	0.00	0.00	0.00	2.52
806	876	0.784778	CTGTTCGACGCCTGTTTCTC	59.215	55.000	0.00	0.00	0.00	2.87
807	877	0.937699	TGTTCGACGCCTGTTTCTCG	60.938	55.000	0.00	0.00	0.00	4.04
808	878	0.662374	GTTCGACGCCTGTTTCTCGA	60.662	55.000	0.00	0.00	33.47	4.04
809	879	0.031043	TTCGACGCCTGTTTCTCGAA	59.969	50.000	0.00	0.00	41.55	3.71
850	920	2.000587	GCCTACGCGCGTCAAATAA	58.999	52.632	41.35	20.38	0.00	1.40
857	927	0.301987	GCGCGTCAAATAAGAGCTCC	59.698	55.000	10.93	0.00	30.13	4.70
865	936	4.767409	GTCAAATAAGAGCTCCCCACTTTT	59.233	41.667	10.93	0.00	0.00	2.27
894	968	6.615264	GAGGAAAGAAAAGTTAAACCTCGT	57.385	37.500	0.00	0.00	34.43	4.18
901	975	8.947055	AAGAAAAGTTAAACCTCGTACTGTAA	57.053	30.769	0.00	0.00	0.00	2.41
911	985	2.006169	TCGTACTGTAACCGCGTCATA	58.994	47.619	4.92	0.00	0.00	2.15
915	989	2.546778	ACTGTAACCGCGTCATATTGG	58.453	47.619	4.92	0.00	0.00	3.16
955	1029	2.912956	ACAAGCCCATTCAGACCTAAGA	59.087	45.455	0.00	0.00	0.00	2.10
1003	1077	3.807538	GCCGTCTCCGTCGCAGTA	61.808	66.667	0.00	0.00	0.00	2.74
1181	1257	2.280119	GCGGCGCAGGTGATGATA	60.280	61.111	29.21	0.00	0.00	2.15
1189	1265	3.589988	CGCAGGTGATGATATAACCCTC	58.410	50.000	0.00	0.00	33.91	4.30
1191	1267	3.327757	GCAGGTGATGATATAACCCTCCA	59.672	47.826	0.00	0.00	33.91	3.86
1192	1268	4.804261	GCAGGTGATGATATAACCCTCCAC	60.804	50.000	0.00	0.00	33.91	4.02
1193	1269	3.910627	AGGTGATGATATAACCCTCCACC	59.089	47.826	0.00	0.00	42.13	4.61
1292	1621	4.557942	GCCAGATGCGTTTTGGTG	57.442	55.556	10.90	0.00	34.43	4.17
1351	1680	0.248498	TTCTTAGATCTCGCACGCGG	60.248	55.000	12.47	0.00	40.25	6.46
1369	1698	1.926561	GGTACGGTTTGACGGGATAC	58.073	55.000	0.00	0.00	38.39	2.24
1398	1745	7.287696	AGTGGTTGGTGATGTTTTTCTTAGATT	59.712	33.333	0.00	0.00	0.00	2.40
1418	1765	1.079405	TCACGGATCAAACGCCCTC	60.079	57.895	0.00	0.00	34.00	4.30
1436	1783	3.130516	CCCTCTGCGTTGAACAGTAGATA	59.869	47.826	7.92	0.00	36.50	1.98
1437	1784	4.355437	CCTCTGCGTTGAACAGTAGATAG	58.645	47.826	7.92	1.98	36.50	2.08
1438	1785	4.355437	CTCTGCGTTGAACAGTAGATAGG	58.645	47.826	7.92	0.00	36.50	2.57
1439	1786	3.130516	TCTGCGTTGAACAGTAGATAGGG	59.869	47.826	0.00	0.00	36.50	3.53
1440	1787	2.202566	GCGTTGAACAGTAGATAGGGC	58.797	52.381	0.00	0.00	0.00	5.19
1441	1788	2.460918	CGTTGAACAGTAGATAGGGCG	58.539	52.381	0.00	0.00	0.00	6.13
1442	1789	2.098607	CGTTGAACAGTAGATAGGGCGA	59.901	50.000	0.00	0.00	0.00	5.54
1443	1790	3.243434	CGTTGAACAGTAGATAGGGCGAT	60.243	47.826	0.00	0.00	0.00	4.58
1444	1791	4.299978	GTTGAACAGTAGATAGGGCGATC	58.700	47.826	0.00	0.00	0.00	3.69
1445	1792	3.833732	TGAACAGTAGATAGGGCGATCT	58.166	45.455	5.91	5.91	39.54	2.75
1446	1793	4.215908	TGAACAGTAGATAGGGCGATCTT	58.784	43.478	5.93	0.00	37.38	2.40
1447	1794	4.278669	TGAACAGTAGATAGGGCGATCTTC	59.721	45.833	5.93	2.06	37.38	2.87
1448	1795	3.833732	ACAGTAGATAGGGCGATCTTCA	58.166	45.455	5.93	0.00	37.38	3.02
1469	1828	6.036577	TCAAAAGTTTTGGGATGCTATTCC	57.963	37.500	24.45	0.00	34.83	3.01
1481	1840	3.838244	TGCTATTCCTGCGGAAATAGT	57.162	42.857	12.55	1.06	45.41	2.12
1500	1859	7.766219	AATAGTACGTGCTAACCACTAAATG	57.234	36.000	17.46	0.00	42.42	2.32
1504	1863	3.749609	ACGTGCTAACCACTAAATGAACC	59.250	43.478	0.00	0.00	42.42	3.62
1511	1870	7.335924	TGCTAACCACTAAATGAACCTCAATAC	59.664	37.037	0.00	0.00	0.00	1.89
1576	1935	4.582240	GTCGTATTAGCCTTGGTAGGTACT	59.418	45.833	0.00	0.00	44.00	2.73
1587	1947	6.947158	GCCTTGGTAGGTACTGTAGTATCTAT	59.053	42.308	13.51	0.00	43.65	1.98
1594	1954	7.999450	AGGTACTGTAGTATCTATAACAGGC	57.001	40.000	3.05	0.00	39.99	4.85
1622	1982	4.955925	AGTGATACTCTGTCGTGAGAAG	57.044	45.455	9.11	0.00	45.01	2.85
1666	2026	9.130312	GCACATATTATTGTTTTTAACACCGAA	57.870	29.630	0.00	0.00	41.97	4.30
1699	2061	2.134789	TACCTCCTTACTGGTCGACC	57.865	55.000	28.17	28.17	37.74	4.79
1772	2134	5.827326	AAAAGCTACTCCCTCTGTAAAGT	57.173	39.130	0.00	0.00	0.00	2.66
1822	2184	5.959618	ACTATTTTGCCTCCTGTTGTTAC	57.040	39.130	0.00	0.00	0.00	2.50
1825	2187	3.857157	TTTGCCTCCTGTTGTTACTCT	57.143	42.857	0.00	0.00	0.00	3.24
1835	2197	6.309357	TCCTGTTGTTACTCTGTCTACCTAA	58.691	40.000	0.00	0.00	0.00	2.69
1904	2267	6.867816	TGTATTTTGGTTTCATGCATTCAGAC	59.132	34.615	0.00	0.00	0.00	3.51
1906	2269	4.771590	TTGGTTTCATGCATTCAGACTC	57.228	40.909	0.00	0.00	0.00	3.36
2081	2444	4.338400	ACGAGGATGACAAAGACGATGATA	59.662	41.667	0.00	0.00	0.00	2.15
2091	2454	7.491372	TGACAAAGACGATGATATTGAAGGTAC	59.509	37.037	0.00	0.00	0.00	3.34
2156	2535	9.594038	CGTATGTTTGTTCAATATATGCCTTAC	57.406	33.333	0.00	0.00	0.00	2.34
2184	2563	4.722194	TCTTCGCATGAAAGTTTGTATGC	58.278	39.130	18.05	18.05	41.76	3.14
2255	2635	5.918011	TCAACAAATCATTTAAAGTCCGCAC	59.082	36.000	0.00	0.00	0.00	5.34
2260	2640	7.120579	ACAAATCATTTAAAGTCCGCACATCTA	59.879	33.333	0.00	0.00	0.00	1.98
2262	2642	7.807977	ATCATTTAAAGTCCGCACATCTATT	57.192	32.000	0.00	0.00	0.00	1.73
2263	2643	7.015226	TCATTTAAAGTCCGCACATCTATTG	57.985	36.000	0.00	0.00	0.00	1.90
2299	2679	6.311735	ACCATGTGTATTTACTGGTCCTTTT	58.688	36.000	0.00	0.00	35.29	2.27
2321	2701	9.260002	CTTTTGGTTCATTTTAGTGCTATTTGT	57.740	29.630	0.00	0.00	0.00	2.83
2348	2728	9.715121	ATTCACATAATCTGTTCAATTTTTGCT	57.285	25.926	0.00	0.00	35.29	3.91
2351	2731	7.742963	CACATAATCTGTTCAATTTTTGCTTGC	59.257	33.333	0.00	0.00	35.29	4.01
2370	2750	5.518848	TTGCTTGTTCTCAAACATGACAT	57.481	34.783	0.00	0.00	44.59	3.06
2372	2752	4.579753	TGCTTGTTCTCAAACATGACATCA	59.420	37.500	0.00	0.00	44.59	3.07
2432	2812	7.364200	CCTGACATATAGTGCAGTAGTACTTC	58.636	42.308	0.00	0.00	41.21	3.01
2442	2822	3.923461	GCAGTAGTACTTCACAGCTTGAG	59.077	47.826	0.00	0.00	34.94	3.02
2465	2845	9.829507	TGAGTGAAATATTGGTTTGAAAATTGT	57.170	25.926	0.00	0.00	0.00	2.71
2513	2893	1.148310	GTATCCACCGCCGATCAATG	58.852	55.000	0.00	0.00	0.00	2.82
2570	2952	4.422840	TGTCAATGAGTTGTTGCAACTTG	58.577	39.130	28.61	21.96	36.69	3.16
2603	2985	4.202050	GCCAAGACATATTGATGGTGTTCC	60.202	45.833	0.00	0.00	37.39	3.62
2620	3002	5.122396	GGTGTTCCTCTTTGCTATTACTGTG	59.878	44.000	0.00	0.00	0.00	3.66
2653	3049	3.067883	TGCTTTTACACTTCAGCATTGCA	59.932	39.130	11.91	0.00	37.35	4.08
2661	3057	4.052608	CACTTCAGCATTGCAAATTGTGA	58.947	39.130	11.91	1.44	0.00	3.58
2662	3058	4.508492	CACTTCAGCATTGCAAATTGTGAA	59.492	37.500	11.91	9.63	0.00	3.18
2663	3059	5.178623	CACTTCAGCATTGCAAATTGTGAAT	59.821	36.000	11.91	0.00	0.00	2.57
2664	3060	5.761234	ACTTCAGCATTGCAAATTGTGAATT	59.239	32.000	11.91	2.57	0.00	2.17
2665	3061	5.599359	TCAGCATTGCAAATTGTGAATTG	57.401	34.783	11.91	0.00	0.00	2.32
2666	3062	4.083749	TCAGCATTGCAAATTGTGAATTGC	60.084	37.500	11.91	5.41	0.00	3.56
2667	3063	4.069304	AGCATTGCAAATTGTGAATTGCT	58.931	34.783	11.91	11.53	0.00	3.91
2668	3064	5.120986	CAGCATTGCAAATTGTGAATTGCTA	59.879	36.000	15.70	4.80	0.00	3.49
2669	3065	5.701750	AGCATTGCAAATTGTGAATTGCTAA	59.298	32.000	14.81	5.32	0.00	3.09
2670	3066	6.373216	AGCATTGCAAATTGTGAATTGCTAAT	59.627	30.769	14.81	7.04	0.00	1.73
2671	3067	7.024768	GCATTGCAAATTGTGAATTGCTAATT	58.975	30.769	1.71	0.00	0.00	1.40
2672	3068	7.007905	GCATTGCAAATTGTGAATTGCTAATTG	59.992	33.333	1.71	2.66	0.00	2.32
2673	3069	7.725818	TTGCAAATTGTGAATTGCTAATTGA	57.274	28.000	11.25	0.00	0.00	2.57
2674	3070	7.354025	TGCAAATTGTGAATTGCTAATTGAG	57.646	32.000	11.25	0.00	0.00	3.02
2694	3090	5.389520	TGAGTAATTTGTGGTCCCATGAAA	58.610	37.500	0.00	0.00	0.00	2.69
2725	3121	6.033341	TGTTGCATACTTCAAACTTGTTGAC	58.967	36.000	0.00	0.00	0.00	3.18
2745	3141	7.277760	TGTTGACGATTGGTCTATGTTATCAAG	59.722	37.037	0.00	0.00	46.24	3.02
2951	3400	8.339714	CGTCTTCACAACTTTTCTTGGTTAATA	58.660	33.333	0.00	0.00	0.00	0.98
3186	3640	2.166459	TGACGAGGATTGTGATGAGACC	59.834	50.000	0.00	0.00	28.27	3.85
3322	3776	2.047655	CGAACTAGCCGTGCCCAA	60.048	61.111	0.00	0.00	0.00	4.12
3499	3955	2.684943	TGGTTTCTCAGTGGGTCTGTA	58.315	47.619	0.00	0.00	43.97	2.74
3504	3960	6.183361	TGGTTTCTCAGTGGGTCTGTATTTTA	60.183	38.462	0.00	0.00	43.97	1.52
3550	4006	2.016318	CCAACATCTCGCCATTGCTAA	58.984	47.619	0.00	0.00	34.43	3.09
3551	4007	2.620115	CCAACATCTCGCCATTGCTAAT	59.380	45.455	0.00	0.00	34.43	1.73
3552	4008	3.814842	CCAACATCTCGCCATTGCTAATA	59.185	43.478	0.00	0.00	34.43	0.98
3553	4009	4.319766	CCAACATCTCGCCATTGCTAATAC	60.320	45.833	0.00	0.00	34.43	1.89
3554	4010	4.071961	ACATCTCGCCATTGCTAATACA	57.928	40.909	0.00	0.00	34.43	2.29
3555	4011	4.060900	ACATCTCGCCATTGCTAATACAG	58.939	43.478	0.00	0.00	34.43	2.74
3580	4036	5.544738	CACGTTTGTGTTTGCTTTCATAG	57.455	39.130	0.00	0.00	41.34	2.23
3581	4037	4.440758	CACGTTTGTGTTTGCTTTCATAGG	59.559	41.667	0.00	0.00	41.34	2.57
3582	4038	4.336993	ACGTTTGTGTTTGCTTTCATAGGA	59.663	37.500	0.00	0.00	0.00	2.94
3583	4039	5.163602	ACGTTTGTGTTTGCTTTCATAGGAA	60.164	36.000	0.00	0.00	31.70	3.36
3584	4040	5.746245	CGTTTGTGTTTGCTTTCATAGGAAA	59.254	36.000	2.15	2.15	41.26	3.13
3585	4041	6.420604	CGTTTGTGTTTGCTTTCATAGGAAAT	59.579	34.615	2.58	0.00	44.53	2.17
3586	4042	7.042791	CGTTTGTGTTTGCTTTCATAGGAAATT	60.043	33.333	2.58	0.00	44.53	1.82
3587	4043	8.611757	GTTTGTGTTTGCTTTCATAGGAAATTT	58.388	29.630	2.58	0.00	44.53	1.82
3588	4044	8.729805	TTGTGTTTGCTTTCATAGGAAATTTT	57.270	26.923	2.58	0.00	44.53	1.82
3589	4045	8.729805	TGTGTTTGCTTTCATAGGAAATTTTT	57.270	26.923	2.58	0.00	44.53	1.94
3590	4046	9.823647	TGTGTTTGCTTTCATAGGAAATTTTTA	57.176	25.926	2.58	0.00	44.53	1.52
3602	4058	9.545611	CATAGGAAATTTTTAATGTTTTGCAGC	57.454	29.630	0.00	0.00	0.00	5.25
3603	4059	6.969366	AGGAAATTTTTAATGTTTTGCAGCC	58.031	32.000	0.00	0.00	0.00	4.85
3604	4060	6.772233	AGGAAATTTTTAATGTTTTGCAGCCT	59.228	30.769	0.00	0.00	0.00	4.58
3605	4061	6.857451	GGAAATTTTTAATGTTTTGCAGCCTG	59.143	34.615	0.00	0.00	0.00	4.85
3606	4062	5.945466	ATTTTTAATGTTTTGCAGCCTGG	57.055	34.783	0.00	0.00	0.00	4.45
3607	4063	4.679373	TTTTAATGTTTTGCAGCCTGGA	57.321	36.364	0.00	0.00	0.00	3.86
3608	4064	3.940209	TTAATGTTTTGCAGCCTGGAG	57.060	42.857	0.00	0.00	0.00	3.86
3633	4089	1.741770	GGCCAGACGCGATCTTTGT	60.742	57.895	15.93	0.00	38.94	2.83
3640	4096	2.329364	CGCGATCTTTGTTGCGTTG	58.671	52.632	0.00	0.00	44.81	4.10
3645	4101	2.310577	GATCTTTGTTGCGTTGTGCTC	58.689	47.619	0.00	0.00	46.63	4.26
3669	4125	1.071471	AGGTTTCCTCGCACACCAG	59.929	57.895	0.00	0.00	0.00	4.00
3670	4126	1.227853	GGTTTCCTCGCACACCAGT	60.228	57.895	0.00	0.00	0.00	4.00
3696	4166	6.672118	GCGGTTATTTTGCCTAAAAATTCTGC	60.672	38.462	1.74	8.21	44.41	4.26
3698	4168	7.518161	GGTTATTTTGCCTAAAAATTCTGCAC	58.482	34.615	1.74	0.00	44.41	4.57
3699	4169	7.360861	GGTTATTTTGCCTAAAAATTCTGCACC	60.361	37.037	1.74	0.00	44.41	5.01
3700	4170	4.953940	TTTGCCTAAAAATTCTGCACCT	57.046	36.364	0.00	0.00	0.00	4.00
3701	4171	3.940209	TGCCTAAAAATTCTGCACCTG	57.060	42.857	0.00	0.00	0.00	4.00
3702	4172	2.029110	TGCCTAAAAATTCTGCACCTGC	60.029	45.455	0.00	0.00	42.50	4.85
3703	4173	2.867429	CCTAAAAATTCTGCACCTGCG	58.133	47.619	0.00	0.00	45.83	5.18
3704	4174	2.253603	CTAAAAATTCTGCACCTGCGC	58.746	47.619	0.00	0.00	45.83	6.09
3705	4175	0.319813	AAAAATTCTGCACCTGCGCC	60.320	50.000	4.18	0.00	45.83	6.53
3706	4176	1.181098	AAAATTCTGCACCTGCGCCT	61.181	50.000	4.18	0.00	45.83	5.52
3707	4177	0.322456	AAATTCTGCACCTGCGCCTA	60.322	50.000	4.18	0.00	45.83	3.93
3708	4178	1.026718	AATTCTGCACCTGCGCCTAC	61.027	55.000	4.18	0.00	45.83	3.18
3709	4179	1.903877	ATTCTGCACCTGCGCCTACT	61.904	55.000	4.18	0.00	45.83	2.57
3710	4180	2.046892	CTGCACCTGCGCCTACTT	60.047	61.111	4.18	0.00	45.83	2.24
3711	4181	2.047274	TGCACCTGCGCCTACTTC	60.047	61.111	4.18	0.00	45.83	3.01
3712	4182	2.266055	GCACCTGCGCCTACTTCT	59.734	61.111	4.18	0.00	0.00	2.85
3713	4183	1.254975	TGCACCTGCGCCTACTTCTA	61.255	55.000	4.18	0.00	45.83	2.10
3714	4184	0.806492	GCACCTGCGCCTACTTCTAC	60.806	60.000	4.18	0.00	0.00	2.59
3715	4185	0.818296	CACCTGCGCCTACTTCTACT	59.182	55.000	4.18	0.00	0.00	2.57
3716	4186	1.104630	ACCTGCGCCTACTTCTACTC	58.895	55.000	4.18	0.00	0.00	2.59
3717	4187	0.029567	CCTGCGCCTACTTCTACTCG	59.970	60.000	4.18	0.00	0.00	4.18
3727	4197	4.150098	CCTACTTCTACTCGTGTGCAAAAC	59.850	45.833	0.00	0.00	0.00	2.43
3728	4198	3.527533	ACTTCTACTCGTGTGCAAAACA	58.472	40.909	0.00	0.00	36.04	2.83
3733	4203	3.272439	ACTCGTGTGCAAAACATCATG	57.728	42.857	0.00	0.00	41.97	3.07
3758	4236	9.574516	TGCTTATACAGTGTATCATCTAAGAGA	57.425	33.333	19.01	5.28	0.00	3.10
3784	4264	0.900421	AGTTGGTTACTAGCCGACCC	59.100	55.000	5.84	0.00	40.46	4.46
3789	4269	0.179153	GTTACTAGCCGACCCGTCAC	60.179	60.000	0.00	0.00	0.00	3.67
3790	4270	1.315257	TTACTAGCCGACCCGTCACC	61.315	60.000	0.00	0.00	0.00	4.02
3795	4275	2.322830	GCCGACCCGTCACCTTTTC	61.323	63.158	0.00	0.00	0.00	2.29
3805	4285	3.252458	CCGTCACCTTTTCCTAACCAAAG	59.748	47.826	0.00	0.00	0.00	2.77
3806	4286	3.304458	CGTCACCTTTTCCTAACCAAAGC	60.304	47.826	0.00	0.00	0.00	3.51
3807	4287	2.882137	TCACCTTTTCCTAACCAAAGCG	59.118	45.455	0.00	0.00	0.00	4.68
3809	4289	1.067846	CCTTTTCCTAACCAAAGCGGC	60.068	52.381	0.00	0.00	39.03	6.53
3812	4292	0.608035	TTCCTAACCAAAGCGGCCTG	60.608	55.000	0.00	0.00	39.03	4.85
3813	4293	2.046285	CCTAACCAAAGCGGCCTGG	61.046	63.158	15.22	15.22	39.03	4.45
3814	4294	1.002624	CTAACCAAAGCGGCCTGGA	60.003	57.895	21.79	3.48	39.03	3.86
3832	4312	2.732094	CGGGTCCGTCACGTCAAC	60.732	66.667	0.00	0.00	38.27	3.18
3833	4313	2.356673	GGGTCCGTCACGTCAACC	60.357	66.667	0.00	0.37	0.00	3.77
3834	4314	2.732658	GGTCCGTCACGTCAACCT	59.267	61.111	0.00	0.00	0.00	3.50
3835	4315	1.663702	GGTCCGTCACGTCAACCTG	60.664	63.158	0.00	0.00	0.00	4.00
3836	4316	1.663702	GTCCGTCACGTCAACCTGG	60.664	63.158	0.00	0.00	0.00	4.45
3837	4317	2.129146	TCCGTCACGTCAACCTGGT	61.129	57.895	0.00	0.00	0.00	4.00
3838	4318	1.227438	CCGTCACGTCAACCTGGTT	60.227	57.895	6.18	6.18	0.00	3.67
3839	4319	0.812412	CCGTCACGTCAACCTGGTTT	60.812	55.000	9.90	0.00	0.00	3.27
3840	4320	0.303493	CGTCACGTCAACCTGGTTTG	59.697	55.000	9.90	5.98	0.00	2.93
3841	4321	1.375551	GTCACGTCAACCTGGTTTGT	58.624	50.000	9.90	6.20	0.00	2.83
3842	4322	1.741145	GTCACGTCAACCTGGTTTGTT	59.259	47.619	9.90	0.00	0.00	2.83
3872	4352	0.688487	TGTCCCCAGTAAAACCCTCG	59.312	55.000	0.00	0.00	0.00	4.63
3873	4353	0.035725	GTCCCCAGTAAAACCCTCGG	60.036	60.000	0.00	0.00	0.00	4.63
3876	4356	1.683441	CCAGTAAAACCCTCGGCCT	59.317	57.895	0.00	0.00	0.00	5.19
3877	4357	0.392595	CCAGTAAAACCCTCGGCCTC	60.393	60.000	0.00	0.00	0.00	4.70
3878	4358	0.323629	CAGTAAAACCCTCGGCCTCA	59.676	55.000	0.00	0.00	0.00	3.86
3879	4359	0.323957	AGTAAAACCCTCGGCCTCAC	59.676	55.000	0.00	0.00	0.00	3.51
3880	4360	0.675837	GTAAAACCCTCGGCCTCACC	60.676	60.000	0.00	0.00	0.00	4.02
3881	4361	0.838987	TAAAACCCTCGGCCTCACCT	60.839	55.000	0.00	0.00	35.61	4.00
3905	4385	2.772515	ACCAAACCCTAGCTCACTATCC	59.227	50.000	0.00	0.00	0.00	2.59
3911	4391	1.810151	CCTAGCTCACTATCCGCTCTC	59.190	57.143	0.00	0.00	35.33	3.20
3914	4394	0.318614	GCTCACTATCCGCTCTCTGC	60.319	60.000	0.00	0.00	38.57	4.26
3922	4402	1.821332	CCGCTCTCTGCCAATTCCC	60.821	63.158	0.00	0.00	38.78	3.97
3927	4407	1.228510	CTCTGCCAATTCCCCTCCC	59.771	63.158	0.00	0.00	0.00	4.30
3928	4408	2.280079	CTGCCAATTCCCCTCCCC	59.720	66.667	0.00	0.00	0.00	4.81
3929	4409	2.536633	TGCCAATTCCCCTCCCCA	60.537	61.111	0.00	0.00	0.00	4.96
3930	4410	2.042944	GCCAATTCCCCTCCCCAC	60.043	66.667	0.00	0.00	0.00	4.61
3931	4411	2.626467	GCCAATTCCCCTCCCCACT	61.626	63.158	0.00	0.00	0.00	4.00
3932	4412	2.096168	CCAATTCCCCTCCCCACTT	58.904	57.895	0.00	0.00	0.00	3.16
3933	4413	0.033109	CCAATTCCCCTCCCCACTTC	60.033	60.000	0.00	0.00	0.00	3.01
3934	4414	0.394352	CAATTCCCCTCCCCACTTCG	60.394	60.000	0.00	0.00	0.00	3.79
3935	4415	0.845102	AATTCCCCTCCCCACTTCGT	60.845	55.000	0.00	0.00	0.00	3.85
3936	4416	1.272554	ATTCCCCTCCCCACTTCGTC	61.273	60.000	0.00	0.00	0.00	4.20
3944	4476	0.400594	CCCCACTTCGTCCTTTTCCT	59.599	55.000	0.00	0.00	0.00	3.36
3949	4481	2.160417	CACTTCGTCCTTTTCCTGCATC	59.840	50.000	0.00	0.00	0.00	3.91
3957	4489	4.450419	GTCCTTTTCCTGCATCATCTATCG	59.550	45.833	0.00	0.00	0.00	2.92
3975	4507	1.525077	GAGGTGCAAACGGGTGACA	60.525	57.895	0.00	0.00	0.00	3.58
3976	4508	1.782028	GAGGTGCAAACGGGTGACAC	61.782	60.000	0.00	0.00	0.00	3.67
3978	4510	1.452145	GGTGCAAACGGGTGACACAT	61.452	55.000	8.08	0.00	32.89	3.21
4037	4569	2.580601	AACCCTACGCCTCGTGCTT	61.581	57.895	1.77	0.00	41.39	3.91
4071	4603	8.816144	GCTTTCTTTGTTTTGTGTATGAATCAA	58.184	29.630	0.00	0.00	0.00	2.57
4083	4615	7.240674	TGTGTATGAATCAAAGATTACAACGC	58.759	34.615	0.00	0.00	0.00	4.84
4103	4645	2.480802	GCGTATGTGAGAGAGCGAGATA	59.519	50.000	0.00	0.00	0.00	1.98
4135	4677	0.974383	CCCCTCGTCTAAGTGGTTGT	59.026	55.000	0.00	0.00	0.00	3.32
4143	4685	3.432252	CGTCTAAGTGGTTGTCATGGTTC	59.568	47.826	0.00	0.00	0.00	3.62
4147	4689	1.156736	GTGGTTGTCATGGTTCTCGG	58.843	55.000	0.00	0.00	0.00	4.63
4183	4725	0.838122	CTCCACCCCCTCACTCACTT	60.838	60.000	0.00	0.00	0.00	3.16
4186	4728	0.905357	CACCCCCTCACTCACTTAGG	59.095	60.000	0.00	0.00	0.00	2.69
4201	4743	2.009774	CTTAGGGCAACTCCAATGACG	58.990	52.381	0.00	0.00	36.21	4.35
4213	4755	1.119635	CAATGACGTGCACCAAAACG	58.880	50.000	12.15	0.10	45.15	3.60
4240	4782	0.102300	CGGACATGTGCGTGGATAGA	59.898	55.000	28.99	0.00	39.61	1.98
4246	4795	1.399714	TGTGCGTGGATAGAGGTAGG	58.600	55.000	0.00	0.00	0.00	3.18
4254	4803	1.429687	GGATAGAGGTAGGGGAGCTGA	59.570	57.143	0.00	0.00	35.50	4.26
4275	4826	6.317140	GCTGATCATCCAAACAGAGACATAAA	59.683	38.462	0.00	0.00	32.90	1.40
4285	4836	9.612620	CCAAACAGAGACATAAAAAGTATCAAC	57.387	33.333	0.00	0.00	29.96	3.18
4300	4851	8.764524	AAAGTATCAACTCTGAATGTCTGTAC	57.235	34.615	0.00	0.00	33.75	2.90
4302	4853	7.767261	AGTATCAACTCTGAATGTCTGTACTC	58.233	38.462	0.00	0.00	34.49	2.59
4306	4857	2.432510	CTCTGAATGTCTGTACTCCCCC	59.567	54.545	0.00	0.00	0.00	5.40
4307	4858	2.187958	CTGAATGTCTGTACTCCCCCA	58.812	52.381	0.00	0.00	0.00	4.96
4323	4874	0.243636	CCCAAACCTCGCCATGTTTC	59.756	55.000	0.00	0.00	32.60	2.78
4330	4881	2.009774	CCTCGCCATGTTTCTTACTGG	58.990	52.381	0.00	0.00	0.00	4.00
4333	4884	2.811431	TCGCCATGTTTCTTACTGGTTG	59.189	45.455	0.00	0.00	31.53	3.77
4346	4897	7.510549	TCTTACTGGTTGAGAGGAATTTTTG	57.489	36.000	0.00	0.00	0.00	2.44
4363	4915	1.458398	TTGATACCACCCACATTGCG	58.542	50.000	0.00	0.00	0.00	4.85
4366	4918	0.550914	ATACCACCCACATTGCGGAT	59.449	50.000	0.00	0.00	0.00	4.18
4391	4949	5.781210	TTGATTACAAGTGTTGATGGCAA	57.219	34.783	0.00	0.00	0.00	4.52
4392	4950	5.781210	TGATTACAAGTGTTGATGGCAAA	57.219	34.783	0.00	0.00	35.42	3.68
4393	4951	6.154203	TGATTACAAGTGTTGATGGCAAAA	57.846	33.333	0.00	0.00	35.42	2.44
4394	4952	6.577103	TGATTACAAGTGTTGATGGCAAAAA	58.423	32.000	0.00	0.00	35.42	1.94
4431	4989	1.379527	GGCTTGGACATTTAGGGACG	58.620	55.000	0.00	0.00	0.00	4.79
4441	4999	4.572909	ACATTTAGGGACGTTGGAGTTAC	58.427	43.478	0.00	0.00	0.00	2.50

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	4.499633	ATTTACCAGGGGCGGGCG	62.500	66.667	0.00	0.00	0.00	6.13
20	21	2.833121	CATTTACCAGGGGCGGGC	60.833	66.667	0.00	0.00	0.00	6.13
21	22	2.123897	CCATTTACCAGGGGCGGG	60.124	66.667	0.00	0.00	0.00	6.13
22	23	2.123897	CCCATTTACCAGGGGCGG	60.124	66.667	0.00	0.00	41.58	6.13
25	26	1.152963	CTCGCCCATTTACCAGGGG	60.153	63.158	0.00	0.00	45.58	4.79
27	28	0.679640	TTGCTCGCCCATTTACCAGG	60.680	55.000	0.00	0.00	0.00	4.45
28	29	1.392589	ATTGCTCGCCCATTTACCAG	58.607	50.000	0.00	0.00	0.00	4.00
29	30	1.476085	CAATTGCTCGCCCATTTACCA	59.524	47.619	0.00	0.00	0.00	3.25
30	31	1.202405	CCAATTGCTCGCCCATTTACC	60.202	52.381	0.00	0.00	0.00	2.85
31	32	1.802508	GCCAATTGCTCGCCCATTTAC	60.803	52.381	0.00	0.00	36.87	2.01
32	33	0.459489	GCCAATTGCTCGCCCATTTA	59.541	50.000	0.00	0.00	36.87	1.40
33	34	1.218854	GCCAATTGCTCGCCCATTT	59.781	52.632	0.00	0.00	36.87	2.32
34	35	2.894919	GCCAATTGCTCGCCCATT	59.105	55.556	0.00	0.00	36.87	3.16
35	36	3.520862	CGCCAATTGCTCGCCCAT	61.521	61.111	0.00	0.00	38.05	4.00
37	38	4.481112	CACGCCAATTGCTCGCCC	62.481	66.667	15.26	0.00	38.05	6.13
38	39	3.430862	TCACGCCAATTGCTCGCC	61.431	61.111	15.26	0.00	38.05	5.54
39	40	2.202349	GTCACGCCAATTGCTCGC	60.202	61.111	15.26	6.66	38.05	5.03
40	41	2.096406	CGTCACGCCAATTGCTCG	59.904	61.111	14.18	14.18	38.05	5.03
41	42	1.132640	GTCGTCACGCCAATTGCTC	59.867	57.895	0.00	0.00	38.05	4.26
42	43	2.667318	CGTCGTCACGCCAATTGCT	61.667	57.895	0.00	0.00	39.69	3.91
43	44	2.202171	CGTCGTCACGCCAATTGC	60.202	61.111	0.00	0.00	39.69	3.56
44	45	1.561717	TTCCGTCGTCACGCCAATTG	61.562	55.000	0.00	0.00	45.29	2.32
45	46	0.672401	ATTCCGTCGTCACGCCAATT	60.672	50.000	0.00	0.00	45.29	2.32
46	47	0.173935	TATTCCGTCGTCACGCCAAT	59.826	50.000	0.00	0.00	45.29	3.16
47	48	0.457166	CTATTCCGTCGTCACGCCAA	60.457	55.000	0.00	0.00	45.29	4.52
48	49	1.138036	CTATTCCGTCGTCACGCCA	59.862	57.895	0.00	0.00	45.29	5.69
49	50	1.588139	CCTATTCCGTCGTCACGCC	60.588	63.158	0.00	0.00	45.29	5.68
50	51	0.591741	CTCCTATTCCGTCGTCACGC	60.592	60.000	0.00	0.00	45.29	5.34
51	52	0.591741	GCTCCTATTCCGTCGTCACG	60.592	60.000	0.00	0.00	46.29	4.35
52	53	0.454600	TGCTCCTATTCCGTCGTCAC	59.545	55.000	0.00	0.00	0.00	3.67
53	54	0.454600	GTGCTCCTATTCCGTCGTCA	59.545	55.000	0.00	0.00	0.00	4.35
54	55	0.739561	AGTGCTCCTATTCCGTCGTC	59.260	55.000	0.00	0.00	0.00	4.20
55	56	0.739561	GAGTGCTCCTATTCCGTCGT	59.260	55.000	0.00	0.00	0.00	4.34
56	57	0.738975	TGAGTGCTCCTATTCCGTCG	59.261	55.000	0.00	0.00	0.00	5.12
57	58	1.537135	GCTGAGTGCTCCTATTCCGTC	60.537	57.143	0.00	0.00	38.95	4.79
58	59	0.461961	GCTGAGTGCTCCTATTCCGT	59.538	55.000	0.00	0.00	38.95	4.69
59	60	3.280920	GCTGAGTGCTCCTATTCCG	57.719	57.895	0.00	0.00	38.95	4.30
69	70	0.670546	TGCGAGGTTTAGCTGAGTGC	60.671	55.000	0.00	0.00	43.29	4.40
70	71	1.071605	GTGCGAGGTTTAGCTGAGTG	58.928	55.000	0.00	0.00	0.00	3.51
71	72	0.969894	AGTGCGAGGTTTAGCTGAGT	59.030	50.000	0.00	0.00	0.00	3.41
72	73	2.531206	GTAGTGCGAGGTTTAGCTGAG	58.469	52.381	0.00	0.00	0.00	3.35
73	74	1.203994	GGTAGTGCGAGGTTTAGCTGA	59.796	52.381	0.00	0.00	0.00	4.26
74	75	1.204941	AGGTAGTGCGAGGTTTAGCTG	59.795	52.381	0.00	0.00	0.00	4.24
75	76	1.558233	AGGTAGTGCGAGGTTTAGCT	58.442	50.000	0.00	0.00	0.00	3.32
76	77	3.515330	TTAGGTAGTGCGAGGTTTAGC	57.485	47.619	0.00	0.00	0.00	3.09
96	97	5.830000	AGTGCGAGGTTTTAACTCTTTTT	57.170	34.783	0.00	0.00	32.83	1.94
97	98	5.830000	AAGTGCGAGGTTTTAACTCTTTT	57.170	34.783	0.00	0.00	32.83	2.27
98	99	5.830000	AAAGTGCGAGGTTTTAACTCTTT	57.170	34.783	0.00	0.00	32.83	2.52
99	100	5.220989	GGAAAAGTGCGAGGTTTTAACTCTT	60.221	40.000	0.00	0.00	32.83	2.85
100	101	4.275196	GGAAAAGTGCGAGGTTTTAACTCT	59.725	41.667	0.00	0.00	32.83	3.24
101	102	4.534168	GGAAAAGTGCGAGGTTTTAACTC	58.466	43.478	0.00	0.00	0.00	3.01
102	103	3.002965	CGGAAAAGTGCGAGGTTTTAACT	59.997	43.478	0.00	0.00	41.88	2.24
103	104	3.294102	CGGAAAAGTGCGAGGTTTTAAC	58.706	45.455	0.00	0.00	41.88	2.01
104	105	2.291190	CCGGAAAAGTGCGAGGTTTTAA	59.709	45.455	0.00	0.00	41.88	1.52
105	106	1.874872	CCGGAAAAGTGCGAGGTTTTA	59.125	47.619	0.00	0.00	41.88	1.52
106	107	0.666374	CCGGAAAAGTGCGAGGTTTT	59.334	50.000	0.00	0.00	41.88	2.43
107	108	1.792118	GCCGGAAAAGTGCGAGGTTT	61.792	55.000	5.05	0.00	41.88	3.27
108	109	2.258726	GCCGGAAAAGTGCGAGGTT	61.259	57.895	5.05	0.00	41.88	3.50
109	110	2.668550	GCCGGAAAAGTGCGAGGT	60.669	61.111	5.05	0.00	41.88	3.85
110	111	1.586154	ATTGCCGGAAAAGTGCGAGG	61.586	55.000	5.05	0.00	41.88	4.63
111	112	0.179189	GATTGCCGGAAAAGTGCGAG	60.179	55.000	5.05	0.00	41.88	5.03
112	113	1.582610	GGATTGCCGGAAAAGTGCGA	61.583	55.000	5.05	0.00	41.88	5.10
113	114	1.154035	GGATTGCCGGAAAAGTGCG	60.154	57.895	5.05	0.00	38.50	5.34
114	115	1.215382	GGGATTGCCGGAAAAGTGC	59.785	57.895	5.05	0.00	33.83	4.40
115	116	2.122783	TAGGGATTGCCGGAAAAGTG	57.877	50.000	5.05	0.00	33.83	3.16
116	117	3.382083	AATAGGGATTGCCGGAAAAGT	57.618	42.857	5.05	0.00	33.83	2.66
117	118	3.699038	TCAAATAGGGATTGCCGGAAAAG	59.301	43.478	5.05	0.00	33.83	2.27
118	119	3.445805	GTCAAATAGGGATTGCCGGAAAA	59.554	43.478	5.05	0.00	33.83	2.29
119	120	3.020984	GTCAAATAGGGATTGCCGGAAA	58.979	45.455	5.05	0.00	33.83	3.13
120	121	2.025793	TGTCAAATAGGGATTGCCGGAA	60.026	45.455	5.05	0.00	33.83	4.30
121	122	1.562008	TGTCAAATAGGGATTGCCGGA	59.438	47.619	5.05	0.00	33.83	5.14
122	123	1.676006	GTGTCAAATAGGGATTGCCGG	59.324	52.381	0.00	0.00	33.83	6.13
123	124	1.330521	CGTGTCAAATAGGGATTGCCG	59.669	52.381	0.00	0.00	33.83	5.69
124	125	1.065551	GCGTGTCAAATAGGGATTGCC	59.934	52.381	0.00	0.00	0.00	4.52
125	126	1.268032	CGCGTGTCAAATAGGGATTGC	60.268	52.381	0.00	0.00	0.00	3.56
126	127	2.006888	ACGCGTGTCAAATAGGGATTG	58.993	47.619	12.93	0.00	0.00	2.67
127	128	2.396590	ACGCGTGTCAAATAGGGATT	57.603	45.000	12.93	0.00	0.00	3.01
128	129	2.223971	CCTACGCGTGTCAAATAGGGAT	60.224	50.000	24.59	0.00	30.60	3.85
129	130	1.135527	CCTACGCGTGTCAAATAGGGA	59.864	52.381	24.59	0.00	30.60	4.20
130	131	1.567504	CCTACGCGTGTCAAATAGGG	58.432	55.000	24.59	5.90	30.60	3.53
131	132	0.928229	GCCTACGCGTGTCAAATAGG	59.072	55.000	24.59	19.56	36.31	2.57
140	141	3.350912	GTCATTTTTATGCCTACGCGTG	58.649	45.455	24.59	11.90	38.08	5.34
141	142	2.029970	CGTCATTTTTATGCCTACGCGT	59.970	45.455	19.17	19.17	38.08	6.01
332	345	6.293407	CGCAATGGACTTTGTATAATACAGGG	60.293	42.308	0.00	0.00	40.24	4.45
333	346	6.260050	ACGCAATGGACTTTGTATAATACAGG	59.740	38.462	0.00	0.00	40.24	4.00
334	347	7.246674	ACGCAATGGACTTTGTATAATACAG	57.753	36.000	0.00	0.00	40.24	2.74
395	408	9.906660	TGAACAAATTCTTAAATTACGCTGAAT	57.093	25.926	0.00	0.00	33.93	2.57
460	475	7.489435	TGAACATTTTGCAGAAATACGTTGAAA	59.511	29.630	0.00	0.00	0.00	2.69
466	481	7.096106	ACACATTGAACATTTTGCAGAAATACG	60.096	33.333	0.00	0.00	0.00	3.06
471	486	6.145858	GCATACACATTGAACATTTTGCAGAA	59.854	34.615	0.00	0.00	0.00	3.02
517	583	8.777865	TGGAAACACATTGAACATTTTTGTAA	57.222	26.923	0.00	0.00	33.40	2.41
518	584	8.777865	TTGGAAACACATTGAACATTTTTGTA	57.222	26.923	0.00	0.00	42.67	2.41
520	586	8.961294	TTTTGGAAACACATTGAACATTTTTG	57.039	26.923	0.00	0.00	42.67	2.44
549	616	9.416794	TGAACAATTTTGCAATATACGTTGAAT	57.583	25.926	16.80	2.86	0.00	2.57
552	619	9.463003	CATTGAACAATTTTGCAATATACGTTG	57.537	29.630	16.80	9.61	30.45	4.10
556	623	7.674564	ACGCATTGAACAATTTTGCAATATAC	58.325	30.769	0.00	0.00	30.45	1.47
560	627	6.724694	ATACGCATTGAACAATTTTGCAAT	57.275	29.167	0.00	0.00	0.00	3.56
563	630	6.150738	TCAATACGCATTGAACAATTTTGC	57.849	33.333	8.63	0.19	45.93	3.68
579	646	8.987599	ATATACGCTGAACAATTTTCAATACG	57.012	30.769	12.75	12.75	0.00	3.06
668	735	9.082313	CCTGGATATTATTTGTGGAGCTAAAAT	57.918	33.333	0.00	0.00	0.00	1.82
672	739	7.072454	ACTTCCTGGATATTATTTGTGGAGCTA	59.928	37.037	0.00	0.00	0.00	3.32
673	740	5.912149	TCCTGGATATTATTTGTGGAGCT	57.088	39.130	0.00	0.00	0.00	4.09
674	741	6.064717	ACTTCCTGGATATTATTTGTGGAGC	58.935	40.000	0.00	0.00	0.00	4.70
675	742	7.229506	GGAACTTCCTGGATATTATTTGTGGAG	59.770	40.741	0.00	0.00	32.53	3.86
677	744	6.833416	TGGAACTTCCTGGATATTATTTGTGG	59.167	38.462	9.31	0.00	37.46	4.17
684	751	9.116067	CGTTTTATTGGAACTTCCTGGATATTA	57.884	33.333	9.31	0.00	37.46	0.98
751	821	3.679824	AGCTCACTACCGCTAGTTTTT	57.320	42.857	0.00	0.00	34.11	1.94
752	822	3.258622	AGAAGCTCACTACCGCTAGTTTT	59.741	43.478	0.00	0.00	34.96	2.43
753	823	2.826725	AGAAGCTCACTACCGCTAGTTT	59.173	45.455	0.00	0.00	34.96	2.66
754	824	2.164624	CAGAAGCTCACTACCGCTAGTT	59.835	50.000	0.00	0.00	34.96	2.24
755	825	1.746220	CAGAAGCTCACTACCGCTAGT	59.254	52.381	0.00	0.00	34.96	2.57
756	826	1.535015	GCAGAAGCTCACTACCGCTAG	60.535	57.143	0.00	0.00	34.96	3.42
757	827	0.456221	GCAGAAGCTCACTACCGCTA	59.544	55.000	0.00	0.00	34.96	4.26
758	828	1.216710	GCAGAAGCTCACTACCGCT	59.783	57.895	0.00	0.00	38.30	5.52
759	829	2.161486	CGCAGAAGCTCACTACCGC	61.161	63.158	0.00	0.00	39.10	5.68
760	830	0.109272	TTCGCAGAAGCTCACTACCG	60.109	55.000	0.00	0.00	45.90	4.02
761	831	1.634702	CTTCGCAGAAGCTCACTACC	58.365	55.000	5.58	0.00	45.90	3.18
762	832	1.067495	ACCTTCGCAGAAGCTCACTAC	60.067	52.381	11.33	0.00	45.90	2.73
763	833	1.257743	ACCTTCGCAGAAGCTCACTA	58.742	50.000	11.33	0.00	45.90	2.74
764	834	1.067495	GTACCTTCGCAGAAGCTCACT	60.067	52.381	11.33	0.00	45.90	3.41
765	835	1.336887	TGTACCTTCGCAGAAGCTCAC	60.337	52.381	11.33	9.13	45.90	3.51
766	836	0.966179	TGTACCTTCGCAGAAGCTCA	59.034	50.000	11.33	7.85	45.90	4.26
767	837	1.634702	CTGTACCTTCGCAGAAGCTC	58.365	55.000	11.33	6.02	45.90	4.09
768	838	0.390472	GCTGTACCTTCGCAGAAGCT	60.390	55.000	11.33	3.10	45.90	3.74
769	839	0.390472	AGCTGTACCTTCGCAGAAGC	60.390	55.000	11.33	0.00	45.90	3.86
770	840	1.337260	ACAGCTGTACCTTCGCAGAAG	60.337	52.381	20.16	10.22	45.90	2.85
771	841	0.679505	ACAGCTGTACCTTCGCAGAA	59.320	50.000	20.16	0.00	45.90	3.02
772	842	0.679505	AACAGCTGTACCTTCGCAGA	59.320	50.000	22.01	0.00	34.87	4.26
773	843	1.071605	GAACAGCTGTACCTTCGCAG	58.928	55.000	22.01	0.00	35.93	5.18
774	844	0.666274	CGAACAGCTGTACCTTCGCA	60.666	55.000	22.01	0.00	0.00	5.10
775	845	0.388134	TCGAACAGCTGTACCTTCGC	60.388	55.000	26.30	9.02	32.65	4.70
776	846	1.337821	GTCGAACAGCTGTACCTTCG	58.662	55.000	25.54	25.54	0.00	3.79
777	847	1.337821	CGTCGAACAGCTGTACCTTC	58.662	55.000	22.01	13.04	0.00	3.46
778	848	0.666577	GCGTCGAACAGCTGTACCTT	60.667	55.000	22.01	3.60	0.00	3.50
779	849	1.080705	GCGTCGAACAGCTGTACCT	60.081	57.895	22.01	4.06	0.00	3.08
780	850	2.092882	GGCGTCGAACAGCTGTACC	61.093	63.158	22.01	14.11	0.00	3.34
781	851	1.080705	AGGCGTCGAACAGCTGTAC	60.081	57.895	22.01	14.04	0.00	2.90
782	852	1.080772	CAGGCGTCGAACAGCTGTA	60.081	57.895	22.01	0.65	0.00	2.74
783	853	2.356313	CAGGCGTCGAACAGCTGT	60.356	61.111	15.25	15.25	0.00	4.40
784	854	1.498865	AAACAGGCGTCGAACAGCTG	61.499	55.000	13.48	13.48	0.00	4.24
785	855	1.222115	GAAACAGGCGTCGAACAGCT	61.222	55.000	0.00	0.00	0.00	4.24
786	856	1.204312	GAAACAGGCGTCGAACAGC	59.796	57.895	0.00	0.00	0.00	4.40
787	857	0.784778	GAGAAACAGGCGTCGAACAG	59.215	55.000	0.00	0.00	0.00	3.16
788	858	0.937699	CGAGAAACAGGCGTCGAACA	60.938	55.000	0.00	0.00	34.28	3.18
789	859	0.662374	TCGAGAAACAGGCGTCGAAC	60.662	55.000	0.00	0.00	38.44	3.95
790	860	0.031043	TTCGAGAAACAGGCGTCGAA	59.969	50.000	0.00	2.09	46.24	3.71
791	861	0.031043	TTTCGAGAAACAGGCGTCGA	59.969	50.000	0.00	0.00	39.57	4.20
792	862	0.856641	TTTTCGAGAAACAGGCGTCG	59.143	50.000	0.00	0.00	0.00	5.12
820	890	1.566018	GCGTAGGCGTCAAACAGCTT	61.566	55.000	0.00	0.00	40.81	3.74
821	891	2.027625	GCGTAGGCGTCAAACAGCT	61.028	57.895	0.00	0.00	40.81	4.24
850	920	0.476611	AGGGAAAAGTGGGGAGCTCT	60.477	55.000	14.64	0.00	0.00	4.09
857	927	2.372852	TCCTCGAGGGAAAAGTGGG	58.627	57.895	30.80	2.34	41.91	4.61
865	936	5.556006	TTAACTTTTCTTTCCTCGAGGGA	57.444	39.130	30.80	21.60	43.41	4.20
894	968	3.708890	CCAATATGACGCGGTTACAGTA	58.291	45.455	12.47	0.00	0.00	2.74
901	975	0.662619	CAATGCCAATATGACGCGGT	59.337	50.000	12.47	0.00	0.00	5.68
915	989	2.264480	GGGTTTTCGGCCCAATGC	59.736	61.111	0.00	0.00	45.40	3.56
1089	1165	1.680487	CCGTCATGGTGGTTGGGTA	59.320	57.895	0.00	0.00	0.00	3.69
1201	1277	3.374402	AGACGAGACAGGCACCGG	61.374	66.667	0.00	0.00	0.00	5.28
1202	1278	2.126307	CAGACGAGACAGGCACCG	60.126	66.667	0.00	0.00	0.00	4.94
1203	1279	0.667792	GAACAGACGAGACAGGCACC	60.668	60.000	0.00	0.00	0.00	5.01
1204	1280	1.004277	CGAACAGACGAGACAGGCAC	61.004	60.000	0.00	0.00	35.09	5.01
1205	1281	1.285950	CGAACAGACGAGACAGGCA	59.714	57.895	0.00	0.00	35.09	4.75
1280	1607	2.035321	CCTAACAACCACCAAAACGCAT	59.965	45.455	0.00	0.00	0.00	4.73
1281	1608	1.405821	CCTAACAACCACCAAAACGCA	59.594	47.619	0.00	0.00	0.00	5.24
1282	1609	1.866471	GCCTAACAACCACCAAAACGC	60.866	52.381	0.00	0.00	0.00	4.84
1283	1610	1.598430	CGCCTAACAACCACCAAAACG	60.598	52.381	0.00	0.00	0.00	3.60
1284	1611	1.406180	ACGCCTAACAACCACCAAAAC	59.594	47.619	0.00	0.00	0.00	2.43
1289	1618	1.170290	AAGCACGCCTAACAACCACC	61.170	55.000	0.00	0.00	0.00	4.61
1292	1621	1.579429	CCAAGCACGCCTAACAACC	59.421	57.895	0.00	0.00	0.00	3.77
1351	1680	1.548986	CGTATCCCGTCAAACCGTAC	58.451	55.000	0.00	0.00	0.00	3.67
1369	1698	4.274950	AGAAAAACATCACCAACCACTACG	59.725	41.667	0.00	0.00	0.00	3.51
1398	1745	1.669760	GGGCGTTTGATCCGTGACA	60.670	57.895	0.00	0.00	0.00	3.58
1418	1765	3.448686	CCCTATCTACTGTTCAACGCAG	58.551	50.000	0.00	0.00	39.67	5.18
1429	1776	5.364157	ACTTTTGAAGATCGCCCTATCTACT	59.636	40.000	0.00	0.00	35.10	2.57
1436	1783	3.005791	CCAAAACTTTTGAAGATCGCCCT	59.994	43.478	14.71	0.00	0.00	5.19
1437	1784	3.317150	CCAAAACTTTTGAAGATCGCCC	58.683	45.455	14.71	0.00	0.00	6.13
1438	1785	3.005367	TCCCAAAACTTTTGAAGATCGCC	59.995	43.478	14.71	0.00	0.00	5.54
1439	1786	4.237349	TCCCAAAACTTTTGAAGATCGC	57.763	40.909	14.71	0.00	0.00	4.58
1440	1787	4.622740	GCATCCCAAAACTTTTGAAGATCG	59.377	41.667	14.71	11.27	0.00	3.69
1441	1788	5.787380	AGCATCCCAAAACTTTTGAAGATC	58.213	37.500	14.71	10.14	0.00	2.75
1442	1789	5.813513	AGCATCCCAAAACTTTTGAAGAT	57.186	34.783	14.71	12.69	0.00	2.40
1443	1790	6.916360	ATAGCATCCCAAAACTTTTGAAGA	57.084	33.333	14.71	11.22	0.00	2.87
1444	1791	6.591448	GGAATAGCATCCCAAAACTTTTGAAG	59.409	38.462	14.71	6.81	33.05	3.02
1445	1792	6.269769	AGGAATAGCATCCCAAAACTTTTGAA	59.730	34.615	14.71	4.27	40.59	2.69
1446	1793	5.779771	AGGAATAGCATCCCAAAACTTTTGA	59.220	36.000	14.71	0.00	40.59	2.69
1447	1794	5.870978	CAGGAATAGCATCCCAAAACTTTTG	59.129	40.000	7.21	7.21	40.59	2.44
1448	1795	5.569428	GCAGGAATAGCATCCCAAAACTTTT	60.569	40.000	0.09	0.00	40.59	2.27
1469	1828	1.922570	AGCACGTACTATTTCCGCAG	58.077	50.000	0.00	0.00	0.00	5.18
1481	1840	4.931002	GGTTCATTTAGTGGTTAGCACGTA	59.069	41.667	8.95	0.00	0.00	3.57
1500	1859	9.823647	TCTGAATAAGATTCAGTATTGAGGTTC	57.176	33.333	22.32	0.00	44.58	3.62
1550	1909	1.188863	ACCAAGGCTAATACGACGGT	58.811	50.000	0.00	0.00	0.00	4.83
1576	1935	9.397280	CTAGCTATGCCTGTTATAGATACTACA	57.603	37.037	0.00	0.00	30.25	2.74
1587	1947	6.207614	CAGAGTATCACTAGCTATGCCTGTTA	59.792	42.308	0.00	0.00	37.82	2.41
1594	1954	5.467063	TCACGACAGAGTATCACTAGCTATG	59.533	44.000	0.00	0.00	37.82	2.23
1622	1982	4.191544	TGTGCATCCTAATTCTACAGTGC	58.808	43.478	0.00	0.00	0.00	4.40
1657	2017	8.934825	GGTATAAGTAACAACAATTCGGTGTTA	58.065	33.333	11.89	11.89	39.73	2.41
1662	2022	7.046033	AGGAGGTATAAGTAACAACAATTCGG	58.954	38.462	0.00	0.00	0.00	4.30
1663	2023	8.488651	AAGGAGGTATAAGTAACAACAATTCG	57.511	34.615	0.00	0.00	0.00	3.34
1666	2026	9.886132	CAGTAAGGAGGTATAAGTAACAACAAT	57.114	33.333	0.00	0.00	0.00	2.71
1667	2027	8.316214	CCAGTAAGGAGGTATAAGTAACAACAA	58.684	37.037	0.00	0.00	41.22	2.83
1699	2061	4.202141	TGCCAAAGGAAACAGAAGTTCATG	60.202	41.667	5.50	3.46	36.84	3.07
1772	2134	8.645814	TCCCTGATCTAAACGCTCTTATATTA	57.354	34.615	0.00	0.00	0.00	0.98
1822	2184	5.752472	CACAGCATGATTTAGGTAGACAGAG	59.248	44.000	0.00	0.00	39.69	3.35
1825	2187	4.080919	AGCACAGCATGATTTAGGTAGACA	60.081	41.667	0.00	0.00	39.69	3.41
1835	2197	6.459670	TTGATCAAATAGCACAGCATGATT	57.540	33.333	5.45	0.00	39.69	2.57
1899	2262	9.513906	TCCAATAAATACAACAAATGAGTCTGA	57.486	29.630	0.00	0.00	0.00	3.27
1904	2267	9.740239	CCAGATCCAATAAATACAACAAATGAG	57.260	33.333	0.00	0.00	0.00	2.90
1906	2269	9.520204	GACCAGATCCAATAAATACAACAAATG	57.480	33.333	0.00	0.00	0.00	2.32
2156	2535	7.858052	ACAAACTTTCATGCGAAGAAATAAG	57.142	32.000	13.48	0.00	34.75	1.73
2163	2542	4.321745	GTGCATACAAACTTTCATGCGAAG	59.678	41.667	10.78	7.00	45.31	3.79
2166	2545	3.825308	AGTGCATACAAACTTTCATGCG	58.175	40.909	10.78	0.00	45.31	4.73
2255	2635	8.370940	ACATGGTACTTATCACTCCAATAGATG	58.629	37.037	0.00	0.00	0.00	2.90
2260	2640	6.313519	ACACATGGTACTTATCACTCCAAT	57.686	37.500	0.00	0.00	0.00	3.16
2262	2642	7.432148	AATACACATGGTACTTATCACTCCA	57.568	36.000	0.00	0.00	34.07	3.86
2263	2643	9.257651	GTAAATACACATGGTACTTATCACTCC	57.742	37.037	0.00	0.00	34.07	3.85
2340	2720	5.642919	TGTTTGAGAACAAGCAAGCAAAAAT	59.357	32.000	0.00	0.00	42.42	1.82
2381	2761	7.099266	AGAACATGTCAACAACAATTTCTCA	57.901	32.000	0.00	0.00	42.37	3.27
2383	2763	6.461509	GGGAGAACATGTCAACAACAATTTCT	60.462	38.462	0.00	0.00	41.92	2.52
2384	2764	5.691754	GGGAGAACATGTCAACAACAATTTC	59.308	40.000	0.00	0.00	42.37	2.17
2432	2812	5.633830	ACCAATATTTCACTCAAGCTGTG	57.366	39.130	0.00	0.00	36.82	3.66
2531	2913	4.703645	TGACAATTGAAAACCGTGAACA	57.296	36.364	13.59	0.00	0.00	3.18
2532	2914	5.746245	TCATTGACAATTGAAAACCGTGAAC	59.254	36.000	13.59	0.00	0.00	3.18
2534	2916	5.067153	ACTCATTGACAATTGAAAACCGTGA	59.933	36.000	13.59	6.08	0.00	4.35
2535	2917	5.280945	ACTCATTGACAATTGAAAACCGTG	58.719	37.500	13.59	2.19	0.00	4.94
2536	2918	5.514274	ACTCATTGACAATTGAAAACCGT	57.486	34.783	13.59	2.71	0.00	4.83
2537	2919	5.748152	ACAACTCATTGACAATTGAAAACCG	59.252	36.000	13.59	1.85	39.30	4.44
2570	2952	0.745845	ATGTCTTGGCCTCGCATCAC	60.746	55.000	3.32	0.00	0.00	3.06
2603	2985	5.583854	AGACATGCACAGTAATAGCAAAGAG	59.416	40.000	0.00	0.00	42.15	2.85
2661	3057	8.034804	GGACCACAAATTACTCAATTAGCAATT	58.965	33.333	0.00	0.00	33.36	2.32
2662	3058	7.363793	GGGACCACAAATTACTCAATTAGCAAT	60.364	37.037	0.00	0.00	33.09	3.56
2663	3059	6.071616	GGGACCACAAATTACTCAATTAGCAA	60.072	38.462	0.00	0.00	33.09	3.91
2664	3060	5.417580	GGGACCACAAATTACTCAATTAGCA	59.582	40.000	0.00	0.00	33.09	3.49
2665	3061	5.417580	TGGGACCACAAATTACTCAATTAGC	59.582	40.000	0.00	0.00	33.09	3.09
2666	3062	7.339212	TCATGGGACCACAAATTACTCAATTAG	59.661	37.037	0.00	0.00	33.09	1.73
2667	3063	7.178573	TCATGGGACCACAAATTACTCAATTA	58.821	34.615	0.00	0.00	33.09	1.40
2668	3064	6.015918	TCATGGGACCACAAATTACTCAATT	58.984	36.000	0.00	0.00	35.84	2.32
2669	3065	5.579047	TCATGGGACCACAAATTACTCAAT	58.421	37.500	0.00	0.00	0.00	2.57
2670	3066	4.991776	TCATGGGACCACAAATTACTCAA	58.008	39.130	0.00	0.00	0.00	3.02
2671	3067	4.649267	TCATGGGACCACAAATTACTCA	57.351	40.909	0.00	0.00	0.00	3.41
2672	3068	5.476945	AGTTTCATGGGACCACAAATTACTC	59.523	40.000	0.00	0.00	0.00	2.59
2673	3069	5.243730	CAGTTTCATGGGACCACAAATTACT	59.756	40.000	0.00	0.00	0.00	2.24
2674	3070	5.010617	ACAGTTTCATGGGACCACAAATTAC	59.989	40.000	0.00	0.00	0.00	1.89
2681	3077	3.132111	ACAAAACAGTTTCATGGGACCAC	59.868	43.478	0.00	0.00	0.00	4.16
2694	3090	6.630071	AGTTTGAAGTATGCAACAAAACAGT	58.370	32.000	16.94	0.00	29.29	3.55
2745	3141	9.302345	TCATCATCAGAGAGTAAACGATTAAAC	57.698	33.333	0.00	0.00	0.00	2.01
2752	3148	4.676546	TGCTCATCATCAGAGAGTAAACG	58.323	43.478	0.00	0.00	35.09	3.60
2951	3400	5.221843	TGGGAATGAAACAGTAGTTAGCAGT	60.222	40.000	0.00	0.00	36.84	4.40
3093	3547	1.303561	AGGCGCCTTGAATTGCTCA	60.304	52.632	27.08	0.00	0.00	4.26
3322	3776	8.109634	AGGAAAAACTGACATAATATCACAGGT	58.890	33.333	0.00	0.00	33.57	4.00
3499	3955	6.371595	TTGACCCCAGATTTGCAATAAAAT	57.628	33.333	0.00	0.00	32.43	1.82
3504	3960	3.443052	TCATTGACCCCAGATTTGCAAT	58.557	40.909	0.00	0.00	0.00	3.56
3550	4006	4.573201	AGCAAACACAAACGTGTACTGTAT	59.427	37.500	0.00	0.00	46.95	2.29
3551	4007	3.933955	AGCAAACACAAACGTGTACTGTA	59.066	39.130	0.00	0.00	46.95	2.74
3552	4008	2.745281	AGCAAACACAAACGTGTACTGT	59.255	40.909	0.00	0.00	46.95	3.55
3553	4009	3.398954	AGCAAACACAAACGTGTACTG	57.601	42.857	0.00	1.68	46.95	2.74
3554	4010	4.083217	TGAAAGCAAACACAAACGTGTACT	60.083	37.500	0.00	0.00	46.95	2.73
3555	4011	4.159857	TGAAAGCAAACACAAACGTGTAC	58.840	39.130	0.00	0.00	46.95	2.90
3577	4033	8.729756	GGCTGCAAAACATTAAAAATTTCCTAT	58.270	29.630	0.50	0.00	0.00	2.57
3578	4034	7.936301	AGGCTGCAAAACATTAAAAATTTCCTA	59.064	29.630	0.50	0.00	0.00	2.94
3580	4036	6.857451	CAGGCTGCAAAACATTAAAAATTTCC	59.143	34.615	0.00	0.00	0.00	3.13
3581	4037	6.857451	CCAGGCTGCAAAACATTAAAAATTTC	59.143	34.615	9.56	0.00	0.00	2.17
3582	4038	6.545298	TCCAGGCTGCAAAACATTAAAAATTT	59.455	30.769	9.56	0.00	0.00	1.82
3583	4039	6.060788	TCCAGGCTGCAAAACATTAAAAATT	58.939	32.000	9.56	0.00	0.00	1.82
3584	4040	5.619220	TCCAGGCTGCAAAACATTAAAAAT	58.381	33.333	9.56	0.00	0.00	1.82
3585	4041	5.028549	TCCAGGCTGCAAAACATTAAAAA	57.971	34.783	9.56	0.00	0.00	1.94
3586	4042	4.630111	CTCCAGGCTGCAAAACATTAAAA	58.370	39.130	9.56	0.00	0.00	1.52
3587	4043	3.554752	GCTCCAGGCTGCAAAACATTAAA	60.555	43.478	9.56	0.00	38.06	1.52
3588	4044	2.029110	GCTCCAGGCTGCAAAACATTAA	60.029	45.455	9.56	0.00	38.06	1.40
3589	4045	1.545582	GCTCCAGGCTGCAAAACATTA	59.454	47.619	9.56	0.00	38.06	1.90
3590	4046	0.319405	GCTCCAGGCTGCAAAACATT	59.681	50.000	9.56	0.00	38.06	2.71
3591	4047	1.969862	GCTCCAGGCTGCAAAACAT	59.030	52.632	9.56	0.00	38.06	2.71
3592	4048	3.447040	GCTCCAGGCTGCAAAACA	58.553	55.556	9.56	0.00	38.06	2.83
3602	4058	1.222936	CTGGCCTTACAGCTCCAGG	59.777	63.158	3.32	3.84	41.71	4.45
3603	4059	0.107945	GTCTGGCCTTACAGCTCCAG	60.108	60.000	3.32	10.01	45.59	3.86
3604	4060	1.888436	CGTCTGGCCTTACAGCTCCA	61.888	60.000	3.32	0.00	38.36	3.86
3605	4061	1.153549	CGTCTGGCCTTACAGCTCC	60.154	63.158	3.32	0.00	38.36	4.70
3606	4062	1.811679	GCGTCTGGCCTTACAGCTC	60.812	63.158	3.32	0.00	38.36	4.09
3607	4063	2.266055	GCGTCTGGCCTTACAGCT	59.734	61.111	3.32	0.00	38.36	4.24
3608	4064	2.907897	ATCGCGTCTGGCCTTACAGC	62.908	60.000	5.77	9.15	38.36	4.40
3633	4089	4.707988	GCAAAGAGCACAACGCAA	57.292	50.000	0.00	0.00	46.13	4.85
3645	4101	0.040067	GTGCGAGGAAACCTGCAAAG	60.040	55.000	13.26	0.00	38.57	2.77
3669	4125	6.367695	AGAATTTTTAGGCAAAATAACCGCAC	59.632	34.615	0.00	0.00	43.20	5.34
3670	4126	6.367422	CAGAATTTTTAGGCAAAATAACCGCA	59.633	34.615	0.00	0.00	43.20	5.69
3671	4127	6.672118	GCAGAATTTTTAGGCAAAATAACCGC	60.672	38.462	0.00	0.00	43.20	5.68
3672	4128	6.367422	TGCAGAATTTTTAGGCAAAATAACCG	59.633	34.615	0.00	0.00	43.20	4.44
3673	4129	7.360861	GGTGCAGAATTTTTAGGCAAAATAACC	60.361	37.037	0.00	0.00	43.20	2.85
3675	4131	7.387397	CAGGTGCAGAATTTTTAGGCAAAATAA	59.613	33.333	0.00	0.00	43.20	1.40
3678	4148	5.055812	CAGGTGCAGAATTTTTAGGCAAAA	58.944	37.500	0.00	0.00	38.76	2.44
3696	4166	0.818296	AGTAGAAGTAGGCGCAGGTG	59.182	55.000	10.83	0.00	0.00	4.00
3698	4168	0.029567	CGAGTAGAAGTAGGCGCAGG	59.970	60.000	10.83	0.00	0.00	4.85
3699	4169	0.733729	ACGAGTAGAAGTAGGCGCAG	59.266	55.000	10.83	0.00	0.00	5.18
3700	4170	0.450583	CACGAGTAGAAGTAGGCGCA	59.549	55.000	10.83	0.00	0.00	6.09
3701	4171	0.450983	ACACGAGTAGAAGTAGGCGC	59.549	55.000	0.00	0.00	0.00	6.53
3702	4172	1.794437	GCACACGAGTAGAAGTAGGCG	60.794	57.143	0.00	0.00	0.00	5.52
3703	4173	1.201647	TGCACACGAGTAGAAGTAGGC	59.798	52.381	0.00	0.00	0.00	3.93
3704	4174	3.570926	TTGCACACGAGTAGAAGTAGG	57.429	47.619	0.00	0.00	0.00	3.18
3705	4175	4.743151	TGTTTTGCACACGAGTAGAAGTAG	59.257	41.667	0.00	0.00	0.00	2.57
3706	4176	4.684877	TGTTTTGCACACGAGTAGAAGTA	58.315	39.130	0.00	0.00	0.00	2.24
3707	4177	3.527533	TGTTTTGCACACGAGTAGAAGT	58.472	40.909	0.00	0.00	0.00	3.01
3708	4178	4.211164	TGATGTTTTGCACACGAGTAGAAG	59.789	41.667	0.00	0.00	38.61	2.85
3709	4179	4.123506	TGATGTTTTGCACACGAGTAGAA	58.876	39.130	0.00	0.00	38.61	2.10
3710	4180	3.723260	TGATGTTTTGCACACGAGTAGA	58.277	40.909	0.00	0.00	38.61	2.59
3711	4181	4.397382	CATGATGTTTTGCACACGAGTAG	58.603	43.478	0.00	0.00	38.61	2.57
3712	4182	3.364864	GCATGATGTTTTGCACACGAGTA	60.365	43.478	0.00	0.00	38.61	2.59
3713	4183	2.605338	GCATGATGTTTTGCACACGAGT	60.605	45.455	0.00	0.00	38.61	4.18
3714	4184	1.980844	GCATGATGTTTTGCACACGAG	59.019	47.619	0.00	0.00	38.61	4.18
3715	4185	1.608109	AGCATGATGTTTTGCACACGA	59.392	42.857	0.00	0.00	41.35	4.35
3716	4186	2.054687	AGCATGATGTTTTGCACACG	57.945	45.000	0.00	0.00	41.35	4.49
3717	4187	6.092092	TGTATAAGCATGATGTTTTGCACAC	58.908	36.000	0.00	0.00	41.35	3.82
3727	4197	8.999220	AGATGATACACTGTATAAGCATGATG	57.001	34.615	0.00	0.00	0.00	3.07
3755	4233	6.862090	CGGCTAGTAACCAACTGTATAATCTC	59.138	42.308	0.00	0.00	39.39	2.75
3756	4234	6.548622	TCGGCTAGTAACCAACTGTATAATCT	59.451	38.462	0.00	0.00	39.39	2.40
3757	4235	6.640092	GTCGGCTAGTAACCAACTGTATAATC	59.360	42.308	0.00	0.00	39.39	1.75
3758	4236	6.462067	GGTCGGCTAGTAACCAACTGTATAAT	60.462	42.308	5.70	0.00	39.39	1.28
3759	4237	5.163519	GGTCGGCTAGTAACCAACTGTATAA	60.164	44.000	5.70	0.00	39.39	0.98
3761	4239	3.131755	GGTCGGCTAGTAACCAACTGTAT	59.868	47.826	5.70	0.00	39.39	2.29
3762	4240	2.493278	GGTCGGCTAGTAACCAACTGTA	59.507	50.000	5.70	0.00	39.39	2.74
3763	4241	1.274447	GGTCGGCTAGTAACCAACTGT	59.726	52.381	5.70	0.00	39.39	3.55
3764	4242	1.405121	GGGTCGGCTAGTAACCAACTG	60.405	57.143	11.01	0.00	39.39	3.16
3765	4243	0.900421	GGGTCGGCTAGTAACCAACT	59.100	55.000	11.01	0.00	42.62	3.16
3766	4244	0.459063	CGGGTCGGCTAGTAACCAAC	60.459	60.000	11.01	0.00	34.62	3.77
3767	4245	0.899717	ACGGGTCGGCTAGTAACCAA	60.900	55.000	11.01	0.00	34.62	3.67
3768	4246	1.304381	ACGGGTCGGCTAGTAACCA	60.304	57.895	11.01	0.00	34.62	3.67
3784	4264	3.304458	GCTTTGGTTAGGAAAAGGTGACG	60.304	47.826	0.00	0.00	34.60	4.35
3789	4269	1.067846	GCCGCTTTGGTTAGGAAAAGG	60.068	52.381	0.00	0.00	41.21	3.11
3790	4270	1.067846	GGCCGCTTTGGTTAGGAAAAG	60.068	52.381	0.00	0.00	41.21	2.27
3795	4275	2.046285	CCAGGCCGCTTTGGTTAGG	61.046	63.158	0.00	0.00	41.21	2.69
3816	4296	2.356673	GGTTGACGTGACGGACCC	60.357	66.667	10.66	0.00	0.00	4.46
3817	4297	1.663702	CAGGTTGACGTGACGGACC	60.664	63.158	10.66	14.06	33.92	4.46
3819	4299	1.678598	AACCAGGTTGACGTGACGGA	61.679	55.000	10.66	0.00	33.92	4.69
3820	4300	0.812412	AAACCAGGTTGACGTGACGG	60.812	55.000	10.66	0.00	33.92	4.79
3821	4301	0.303493	CAAACCAGGTTGACGTGACG	59.697	55.000	5.30	2.24	33.92	4.35
3822	4302	1.375551	ACAAACCAGGTTGACGTGAC	58.624	50.000	5.30	0.00	33.92	3.67
3824	4304	1.740585	TCAACAAACCAGGTTGACGTG	59.259	47.619	5.30	2.63	46.95	4.49
3825	4305	2.116827	TCAACAAACCAGGTTGACGT	57.883	45.000	5.30	0.76	46.95	4.34
3829	4309	0.750249	GGGGTCAACAAACCAGGTTG	59.250	55.000	5.30	0.00	45.34	3.77
3830	4310	0.336737	TGGGGTCAACAAACCAGGTT	59.663	50.000	0.00	0.00	41.40	3.50
3831	4311	0.396556	GTGGGGTCAACAAACCAGGT	60.397	55.000	0.00	0.00	41.40	4.00
3832	4312	0.106217	AGTGGGGTCAACAAACCAGG	60.106	55.000	0.00	0.00	41.40	4.45
3833	4313	1.133792	AGAGTGGGGTCAACAAACCAG	60.134	52.381	0.00	0.00	41.40	4.00
3834	4314	0.923358	AGAGTGGGGTCAACAAACCA	59.077	50.000	0.00	0.00	41.40	3.67
3835	4315	1.318576	CAGAGTGGGGTCAACAAACC	58.681	55.000	0.00	0.00	38.69	3.27
3836	4316	1.947456	GACAGAGTGGGGTCAACAAAC	59.053	52.381	0.00	0.00	34.22	2.93
3837	4317	1.133915	GGACAGAGTGGGGTCAACAAA	60.134	52.381	0.00	0.00	35.74	2.83
3838	4318	0.472471	GGACAGAGTGGGGTCAACAA	59.528	55.000	0.00	0.00	35.74	2.83
3839	4319	1.415672	GGGACAGAGTGGGGTCAACA	61.416	60.000	0.00	0.00	35.74	3.33
3840	4320	1.375326	GGGACAGAGTGGGGTCAAC	59.625	63.158	0.00	0.00	35.74	3.18
3841	4321	1.846124	GGGGACAGAGTGGGGTCAA	60.846	63.158	0.00	0.00	35.74	3.18
3842	4322	2.203938	GGGGACAGAGTGGGGTCA	60.204	66.667	0.00	0.00	35.74	4.02
3872	4352	1.603739	GTTTGGTCCAGGTGAGGCC	60.604	63.158	0.00	0.00	37.58	5.19
3873	4353	1.603739	GGTTTGGTCCAGGTGAGGC	60.604	63.158	0.00	0.00	0.00	4.70
3876	4356	1.358152	CTAGGGTTTGGTCCAGGTGA	58.642	55.000	0.00	0.00	0.00	4.02
3877	4357	0.322546	GCTAGGGTTTGGTCCAGGTG	60.323	60.000	0.00	0.00	0.00	4.00
3878	4358	0.475828	AGCTAGGGTTTGGTCCAGGT	60.476	55.000	0.00	0.00	0.00	4.00
3879	4359	0.253327	GAGCTAGGGTTTGGTCCAGG	59.747	60.000	0.00	0.00	0.00	4.45
3880	4360	0.984230	TGAGCTAGGGTTTGGTCCAG	59.016	55.000	0.00	0.00	0.00	3.86
3881	4361	0.690762	GTGAGCTAGGGTTTGGTCCA	59.309	55.000	0.00	0.00	0.00	4.02
3911	4391	2.280079	GGGGAGGGGAATTGGCAG	59.720	66.667	0.00	0.00	0.00	4.85
3914	4394	0.033109	GAAGTGGGGAGGGGAATTGG	60.033	60.000	0.00	0.00	0.00	3.16
3930	4410	2.426522	TGATGCAGGAAAAGGACGAAG	58.573	47.619	0.00	0.00	0.00	3.79
3931	4411	2.559698	TGATGCAGGAAAAGGACGAA	57.440	45.000	0.00	0.00	0.00	3.85
3932	4412	2.237143	AGATGATGCAGGAAAAGGACGA	59.763	45.455	0.00	0.00	0.00	4.20
3933	4413	2.636830	AGATGATGCAGGAAAAGGACG	58.363	47.619	0.00	0.00	0.00	4.79
3934	4414	4.450419	CGATAGATGATGCAGGAAAAGGAC	59.550	45.833	0.00	0.00	39.76	3.85
3935	4415	4.344968	TCGATAGATGATGCAGGAAAAGGA	59.655	41.667	0.00	0.00	42.67	3.36
3936	4416	4.635223	TCGATAGATGATGCAGGAAAAGG	58.365	43.478	0.00	0.00	42.67	3.11
3957	4489	1.525077	TGTCACCCGTTTGCACCTC	60.525	57.895	0.00	0.00	0.00	3.85
3987	4519	7.008332	TCCATAATAAGAGACCCGAACTCATA	58.992	38.462	0.00	0.00	36.91	2.15
3990	4522	5.535406	TCTCCATAATAAGAGACCCGAACTC	59.465	44.000	0.00	0.00	34.23	3.01
3994	4526	7.008332	TGTTATCTCCATAATAAGAGACCCGA	58.992	38.462	0.00	0.00	41.74	5.14
3999	4531	8.798975	AGGGTTGTTATCTCCATAATAAGAGA	57.201	34.615	0.00	0.00	43.03	3.10
4006	4538	4.202284	GGCGTAGGGTTGTTATCTCCATAA	60.202	45.833	0.00	0.00	0.00	1.90
4007	4539	3.322828	GGCGTAGGGTTGTTATCTCCATA	59.677	47.826	0.00	0.00	0.00	2.74
4037	4569	4.081917	ACAAAACAAAGAAAGCCTTTCCGA	60.082	37.500	13.45	0.00	42.88	4.55
4071	4603	4.740268	TCTCACATACGCGTTGTAATCTT	58.260	39.130	20.78	0.00	36.44	2.40
4081	4613	0.655915	CTCGCTCTCTCACATACGCG	60.656	60.000	3.53	3.53	41.69	6.01
4083	4615	3.991121	TCTATCTCGCTCTCTCACATACG	59.009	47.826	0.00	0.00	0.00	3.06
4103	4645	1.630878	ACGAGGGGCTTTCATTCTTCT	59.369	47.619	0.00	0.00	0.00	2.85
4135	4677	2.632377	GAAATCAGCCGAGAACCATGA	58.368	47.619	0.00	0.00	0.00	3.07
4164	4706	0.838122	AAGTGAGTGAGGGGGTGGAG	60.838	60.000	0.00	0.00	0.00	3.86
4173	4715	2.354203	GGAGTTGCCCTAAGTGAGTGAG	60.354	54.545	0.00	0.00	0.00	3.51
4183	4725	0.981183	ACGTCATTGGAGTTGCCCTA	59.019	50.000	0.00	0.00	34.97	3.53
4186	4728	1.210155	GCACGTCATTGGAGTTGCC	59.790	57.895	0.00	0.00	37.10	4.52
4201	4743	2.116366	GATGTGTTCGTTTTGGTGCAC	58.884	47.619	8.80	8.80	0.00	4.57
4228	4770	0.674534	CCCTACCTCTATCCACGCAC	59.325	60.000	0.00	0.00	0.00	5.34
4229	4771	0.469331	CCCCTACCTCTATCCACGCA	60.469	60.000	0.00	0.00	0.00	5.24
4232	4774	1.148236	AGCTCCCCTACCTCTATCCAC	59.852	57.143	0.00	0.00	0.00	4.02
4240	4782	1.484065	GGATGATCAGCTCCCCTACCT	60.484	57.143	11.34	0.00	0.00	3.08
4246	4795	2.092753	TCTGTTTGGATGATCAGCTCCC	60.093	50.000	11.34	5.22	0.00	4.30
4254	4803	8.641498	ACTTTTTATGTCTCTGTTTGGATGAT	57.359	30.769	0.00	0.00	0.00	2.45
4275	4826	8.589338	AGTACAGACATTCAGAGTTGATACTTT	58.411	33.333	0.00	0.00	33.84	2.66
4285	4836	2.432510	GGGGGAGTACAGACATTCAGAG	59.567	54.545	0.00	0.00	0.00	3.35
4300	4851	2.983879	ATGGCGAGGTTTGGGGGAG	61.984	63.158	0.00	0.00	0.00	4.30
4302	4853	2.755469	CATGGCGAGGTTTGGGGG	60.755	66.667	0.00	0.00	0.00	5.40
4306	4857	3.502211	AGTAAGAAACATGGCGAGGTTTG	59.498	43.478	16.21	0.00	36.24	2.93
4307	4858	3.502211	CAGTAAGAAACATGGCGAGGTTT	59.498	43.478	11.34	11.34	38.75	3.27
4323	4874	7.510549	TCAAAAATTCCTCTCAACCAGTAAG	57.489	36.000	0.00	0.00	0.00	2.34
4330	4881	6.350194	GGGTGGTATCAAAAATTCCTCTCAAC	60.350	42.308	0.00	0.00	0.00	3.18
4333	4884	5.125578	GTGGGTGGTATCAAAAATTCCTCTC	59.874	44.000	0.00	0.00	0.00	3.20
4346	4897	0.107410	TCCGCAATGTGGGTGGTATC	60.107	55.000	13.44	0.00	37.22	2.24
4363	4915	6.808212	CCATCAACACTTGTAATCAAACATCC	59.192	38.462	0.00	0.00	32.87	3.51
4366	4918	5.068329	TGCCATCAACACTTGTAATCAAACA	59.932	36.000	0.00	0.00	32.87	2.83
4418	4976	3.329929	ACTCCAACGTCCCTAAATGTC	57.670	47.619	0.00	0.00	0.00	3.06
4431	4989	6.176014	AGATGCTATAAGGGTAACTCCAAC	57.824	41.667	0.00	0.00	38.11	3.77

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.