Multiple sequence alignment - TraesCS1B01G247900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G247900 chr1B 100.000 7131 0 0 1 7131 438709810 438702680 0.000000e+00 13169.0
1 TraesCS1B01G247900 chr1B 83.203 256 23 6 3102 3347 181317323 181317078 4.330000e-52 217.0
2 TraesCS1B01G247900 chr1D 93.486 7185 306 69 6 7127 325692002 325684917 0.000000e+00 10527.0
3 TraesCS1B01G247900 chr1A 93.618 4654 204 41 7 4614 418033280 418037886 0.000000e+00 6863.0
4 TraesCS1B01G247900 chr1A 93.671 2544 96 29 4613 7127 418038145 418040652 0.000000e+00 3746.0
5 TraesCS1B01G247900 chr4D 88.362 232 26 1 3097 3328 208560168 208560398 1.960000e-70 278.0
6 TraesCS1B01G247900 chr7B 87.225 227 29 0 3102 3328 107925850 107925624 7.100000e-65 259.0
7 TraesCS1B01G247900 chr6D 85.115 262 29 3 3102 3353 103962485 103962224 7.100000e-65 259.0
8 TraesCS1B01G247900 chr7D 86.784 227 30 0 3102 3328 145766955 145766729 3.300000e-63 254.0
9 TraesCS1B01G247900 chr5B 84.109 258 30 5 3101 3347 594870753 594870496 9.250000e-59 239.0
10 TraesCS1B01G247900 chr5B 83.077 260 31 5 3098 3347 317855564 317855820 2.590000e-54 224.0
11 TraesCS1B01G247900 chr5B 100.000 29 0 0 3321 3349 317855593 317855565 4.000000e-03 54.7
12 TraesCS1B01G247900 chr7A 88.679 159 18 0 3170 3328 146456365 146456207 2.030000e-45 195.0
13 TraesCS1B01G247900 chr4A 92.500 40 2 1 6989 7027 624290045 624290006 1.000000e-03 56.5
14 TraesCS1B01G247900 chr3D 100.000 29 0 0 3321 3349 272955873 272955845 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G247900 chr1B 438702680 438709810 7130 True 13169.0 13169 100.0000 1 7131 1 chr1B.!!$R2 7130
1 TraesCS1B01G247900 chr1D 325684917 325692002 7085 True 10527.0 10527 93.4860 6 7127 1 chr1D.!!$R1 7121
2 TraesCS1B01G247900 chr1A 418033280 418040652 7372 False 5304.5 6863 93.6445 7 7127 2 chr1A.!!$F1 7120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 533 0.035056 CCGGAAATGAAGGTGGCTCT 60.035 55.000 0.00 0.0 0.00 4.09 F
795 802 0.464373 CGCAGCCTCTCTCTCTCTCT 60.464 60.000 0.00 0.0 0.00 3.10 F
1733 1747 0.322008 GGGGAGTTTCTGGTGCAGAG 60.322 60.000 0.00 0.0 41.75 3.35 F
2199 2215 1.072173 TCATGGGCCGGTGAGATAATG 59.928 52.381 1.90 0.0 0.00 1.90 F
2305 2321 1.930503 CAAAAGTTGCCGTGAAAACCC 59.069 47.619 0.00 0.0 0.00 4.11 F
3748 3804 1.055849 TGTCATGTACAGTGTGCCCT 58.944 50.000 5.88 0.0 33.01 5.19 F
5449 5770 0.247736 ATCACCTTCTGCTCGTCACC 59.752 55.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1547 0.392998 ACCGGCAAGAATAGCACCTG 60.393 55.000 0.00 0.00 0.00 4.00 R
2753 2771 1.134521 TCCGTGCATTGACCATACTCC 60.135 52.381 0.00 0.00 0.00 3.85 R
3198 3236 0.313672 TTGCTAGCCAACTTTTGCCG 59.686 50.000 13.29 0.00 0.00 5.69 R
3317 3355 1.168714 GGTTGCCATCCACACTTCTC 58.831 55.000 0.00 0.00 0.00 2.87 R
4243 4299 1.458398 TTGGTGGTGACAAGTGTGTG 58.542 50.000 0.00 0.00 46.06 3.82 R
5616 5937 0.538977 AGCAATGTCTGGCAGCTGTT 60.539 50.000 16.64 0.83 33.67 3.16 R
6547 6890 1.213430 TGATCATGCCTCCTGATGCAA 59.787 47.619 1.27 0.00 41.50 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.872245 GTGCAGTAGTTGTTCTTGCAGA 59.128 45.455 0.00 0.00 39.57 4.26
85 86 2.159028 GCTGACTAGATGTGGAAGGGAC 60.159 54.545 0.00 0.00 0.00 4.46
90 91 2.814805 AGATGTGGAAGGGACAATGG 57.185 50.000 0.00 0.00 0.00 3.16
107 109 1.065410 TGGGAAGAAAGGGGAGCACA 61.065 55.000 0.00 0.00 0.00 4.57
112 114 1.062488 AGAAAGGGGAGCACACCAGT 61.062 55.000 4.86 0.00 43.15 4.00
119 121 1.871772 GAGCACACCAGTGATGCAC 59.128 57.895 19.94 13.63 45.89 4.57
139 141 2.806244 ACGGAAGTACTTGCAACATCAC 59.194 45.455 24.48 2.64 46.88 3.06
142 144 4.537015 GGAAGTACTTGCAACATCACAAC 58.463 43.478 20.93 0.00 0.00 3.32
153 155 1.001745 CATCACAACAGCGACGACGA 61.002 55.000 12.29 0.00 42.66 4.20
158 160 1.065273 AACAGCGACGACGACTTGT 59.935 52.632 12.29 8.88 42.66 3.16
203 205 2.656192 GCACGACGACAAAAAGCTTA 57.344 45.000 0.00 0.00 0.00 3.09
208 210 2.095969 CGACGACAAAAAGCTTATGGCA 60.096 45.455 15.95 0.00 44.79 4.92
216 218 5.048364 ACAAAAAGCTTATGGCACGTGAATA 60.048 36.000 22.23 13.25 44.79 1.75
218 220 3.819564 AGCTTATGGCACGTGAATAGA 57.180 42.857 22.23 0.00 44.79 1.98
272 276 4.769345 AGGGAATGAAGAGGAGAATGTC 57.231 45.455 0.00 0.00 0.00 3.06
282 286 2.497675 GAGGAGAATGTCTGGTGCTACA 59.502 50.000 0.00 0.00 0.00 2.74
313 317 0.317938 GCTACTGTGATACGGGCTCG 60.318 60.000 3.27 3.27 43.02 5.03
327 331 4.643733 CTCGTGAGCCATCGGATC 57.356 61.111 0.00 0.00 38.78 3.36
345 349 4.617959 GGATCCTCAAATCGAACGACATA 58.382 43.478 3.84 0.00 0.00 2.29
348 352 5.257082 TCCTCAAATCGAACGACATATGA 57.743 39.130 10.38 1.83 0.00 2.15
391 395 6.481644 GGATCTATGCTCAATTTTCGAACTCT 59.518 38.462 0.00 0.00 0.00 3.24
401 405 8.385898 TCAATTTTCGAACTCTTAAAAGGCTA 57.614 30.769 0.00 0.00 0.00 3.93
420 425 6.704310 AGGCTATTTTTCAAATGTTGCAGAT 58.296 32.000 0.00 0.00 0.00 2.90
423 428 8.291740 GGCTATTTTTCAAATGTTGCAGATTTT 58.708 29.630 3.63 0.00 0.00 1.82
424 429 9.321590 GCTATTTTTCAAATGTTGCAGATTTTC 57.678 29.630 3.63 0.00 0.00 2.29
435 440 2.105766 GCAGATTTTCTGGGAGCCATT 58.894 47.619 6.64 0.00 44.43 3.16
450 455 4.458397 GAGCCATTCAATCTGAGAATCCA 58.542 43.478 0.00 0.00 33.64 3.41
456 461 1.672881 CAATCTGAGAATCCAACGGCC 59.327 52.381 0.00 0.00 0.00 6.13
457 462 0.179073 ATCTGAGAATCCAACGGCCG 60.179 55.000 26.86 26.86 0.00 6.13
459 464 0.807667 CTGAGAATCCAACGGCCGAG 60.808 60.000 35.90 23.30 0.00 4.63
460 465 1.254975 TGAGAATCCAACGGCCGAGA 61.255 55.000 35.90 24.79 0.00 4.04
463 468 1.706287 GAATCCAACGGCCGAGAAGC 61.706 60.000 35.90 16.35 0.00 3.86
464 469 2.185310 AATCCAACGGCCGAGAAGCT 62.185 55.000 35.90 4.54 0.00 3.74
481 486 0.381089 GCTCGTATCACGGTAGCACT 59.619 55.000 7.32 0.00 40.02 4.40
487 492 2.852495 ATCACGGTAGCACTTGGGCG 62.852 60.000 0.00 0.00 39.27 6.13
510 515 2.028930 CGGTAGCACCAGATATTCTCCC 60.029 54.545 6.21 0.00 38.47 4.30
511 516 2.028930 GGTAGCACCAGATATTCTCCCG 60.029 54.545 1.01 0.00 38.42 5.14
528 533 0.035056 CCGGAAATGAAGGTGGCTCT 60.035 55.000 0.00 0.00 0.00 4.09
544 549 1.502163 CTCTTGGATGATTCGGCGCC 61.502 60.000 19.07 19.07 0.00 6.53
586 591 3.118454 CGCGTGGCAAAGACGGAT 61.118 61.111 0.00 0.00 37.30 4.18
602 607 1.098050 GGATGACACTTGTGGCATCC 58.902 55.000 37.50 37.50 46.84 3.51
612 617 1.199615 TGTGGCATCCTCAACCGATA 58.800 50.000 0.00 0.00 0.00 2.92
720 726 2.029020 TCATTTACGCTGTCAGCAGACT 60.029 45.455 24.13 6.14 45.28 3.24
792 799 1.433064 CACGCAGCCTCTCTCTCTC 59.567 63.158 0.00 0.00 0.00 3.20
793 800 1.031571 CACGCAGCCTCTCTCTCTCT 61.032 60.000 0.00 0.00 0.00 3.10
794 801 0.748005 ACGCAGCCTCTCTCTCTCTC 60.748 60.000 0.00 0.00 0.00 3.20
795 802 0.464373 CGCAGCCTCTCTCTCTCTCT 60.464 60.000 0.00 0.00 0.00 3.10
867 874 2.262603 CCGCACTGCTCTGCTGTA 59.737 61.111 0.00 0.00 38.59 2.74
868 875 2.097038 CCGCACTGCTCTGCTGTAC 61.097 63.158 0.00 0.00 38.59 2.90
869 876 1.080230 CGCACTGCTCTGCTGTACT 60.080 57.895 0.00 0.00 38.59 2.73
920 927 1.450312 CAAACCCTAGCCAGCCTCG 60.450 63.158 0.00 0.00 0.00 4.63
1089 1099 4.262851 GGAAGAAGAAGAGGAAGAAGCTGT 60.263 45.833 0.00 0.00 0.00 4.40
1093 1103 3.169099 AGAAGAGGAAGAAGCTGTAGCA 58.831 45.455 6.65 0.00 45.16 3.49
1366 1376 6.598457 AGTGACTAAATCAGCGACTAGACTTA 59.402 38.462 0.00 0.00 38.28 2.24
1370 1380 6.773685 ACTAAATCAGCGACTAGACTTAGGAT 59.226 38.462 0.00 0.00 0.00 3.24
1414 1425 2.370281 TTGCGCCTCTGAGAGTAAAG 57.630 50.000 4.18 0.00 0.00 1.85
1536 1547 7.205297 ACACATACGGTATAACACAGTTATCC 58.795 38.462 5.74 6.89 36.84 2.59
1566 1580 6.017440 GCTATTCTTGCCGGTAAACATGATAA 60.017 38.462 6.40 0.00 0.00 1.75
1733 1747 0.322008 GGGGAGTTTCTGGTGCAGAG 60.322 60.000 0.00 0.00 41.75 3.35
1740 1754 2.880890 GTTTCTGGTGCAGAGTTGTGAT 59.119 45.455 0.00 0.00 41.75 3.06
2103 2119 6.946583 AGATCATGGCAACTGCATAGAAATAT 59.053 34.615 3.76 0.00 44.36 1.28
2165 2181 8.474025 ACATCCTGACACAATTTTCAGTTTAAA 58.526 29.630 7.41 0.00 38.06 1.52
2199 2215 1.072173 TCATGGGCCGGTGAGATAATG 59.928 52.381 1.90 0.00 0.00 1.90
2228 2244 7.042119 CCGACAAAAATTGCCATAAAAGAAAGT 60.042 33.333 0.00 0.00 0.00 2.66
2304 2320 2.601314 GACAAAAGTTGCCGTGAAAACC 59.399 45.455 0.00 0.00 0.00 3.27
2305 2321 1.930503 CAAAAGTTGCCGTGAAAACCC 59.069 47.619 0.00 0.00 0.00 4.11
2441 2458 4.628333 ACAGTTTAATGACGGGTTATGTCG 59.372 41.667 0.00 0.00 39.22 4.35
2570 2587 8.814038 ATAAAATAGTGATGCCTGAAGTTTCT 57.186 30.769 0.00 0.00 0.00 2.52
2611 2628 3.372822 CCGCGATAGAAAAGGCAAAAGTA 59.627 43.478 8.23 0.00 39.76 2.24
2641 2659 6.558771 TGGTGACATTAGAAGTTGATGTTG 57.441 37.500 0.00 0.00 34.38 3.33
2675 2693 3.326588 TCCCTTCATATACGGAATGGTGG 59.673 47.826 8.95 0.00 33.40 4.61
2676 2694 3.072476 CCCTTCATATACGGAATGGTGGT 59.928 47.826 0.00 0.00 0.00 4.16
2677 2695 4.285003 CCCTTCATATACGGAATGGTGGTA 59.715 45.833 0.00 0.00 0.00 3.25
2705 2723 6.989169 AGCTATATTGAACTGATGGAAGTGAC 59.011 38.462 0.00 0.00 0.00 3.67
2712 2730 5.481824 TGAACTGATGGAAGTGACTATGTCT 59.518 40.000 0.00 0.00 33.15 3.41
2753 2771 6.648879 TTTGATGTAAAGAACCTTTGAGGG 57.351 37.500 2.49 0.00 40.58 4.30
2815 2852 7.675870 GCATAATTTTGTCTACAGTGAGCTCTG 60.676 40.741 16.19 8.41 40.80 3.35
3010 3047 6.159293 TGTCTAAGTAGCTTTGATCACACAG 58.841 40.000 0.00 0.00 29.44 3.66
3069 3107 2.103771 TCCACATGATGCTTCTAGGAGC 59.896 50.000 16.79 16.79 43.00 4.70
3198 3236 2.351350 CCAAATTGGTCGCCACACTTAC 60.351 50.000 3.34 0.00 30.78 2.34
3382 3438 6.203530 ACAATCATTAATACTCATGTCCGCTG 59.796 38.462 0.00 0.00 0.00 5.18
3398 3454 2.271800 CGCTGAGTTGAGGTAATGTCC 58.728 52.381 0.00 0.00 0.00 4.02
3421 3477 6.418819 TCCGTCTCTTTTACTTGTTTACTTCG 59.581 38.462 0.00 0.00 0.00 3.79
3484 3540 5.824429 TGTGATCTTTTCTGTTGAGCTTTG 58.176 37.500 0.00 0.00 0.00 2.77
3590 3646 5.616488 TTATGCTACAAAAGACGGTTTCC 57.384 39.130 0.00 0.00 0.00 3.13
3698 3754 8.748412 TGCTGCACCTTATTTATTTACTTCATT 58.252 29.630 0.00 0.00 0.00 2.57
3748 3804 1.055849 TGTCATGTACAGTGTGCCCT 58.944 50.000 5.88 0.00 33.01 5.19
3764 3820 1.732259 GCCCTACAATCTGTCAACGTG 59.268 52.381 0.00 0.00 0.00 4.49
3768 3824 5.416083 CCCTACAATCTGTCAACGTGATTA 58.584 41.667 0.00 0.00 0.00 1.75
3771 3827 7.255569 CCTACAATCTGTCAACGTGATTACTA 58.744 38.462 0.00 0.00 0.00 1.82
4086 4142 8.566260 CATCTTTCAACTTCACTCTGAATTTCT 58.434 33.333 0.00 0.00 35.59 2.52
4121 4177 9.802039 AAGGTACAGGATAAAACAAATGAGTTA 57.198 29.630 0.00 0.00 0.00 2.24
4243 4299 9.216117 ACTACCATGTCATGTTAGTTTAGTTTC 57.784 33.333 15.29 0.00 35.30 2.78
4266 4322 3.513515 ACACACTTGTCACCACCAAATTT 59.486 39.130 0.00 0.00 0.00 1.82
4305 4361 3.751479 AAGGTTGGATGCTTGGTTTTC 57.249 42.857 0.00 0.00 0.00 2.29
4364 4425 1.218316 GGTTCGATTCCTGCGTCCT 59.782 57.895 0.00 0.00 0.00 3.85
4370 4431 1.067060 CGATTCCTGCGTCCTCATGTA 59.933 52.381 0.00 0.00 0.00 2.29
4720 5041 7.787904 TCCATACTTGCCCTAAGACTCTTATTA 59.212 37.037 0.00 0.00 39.76 0.98
4875 5196 6.843069 AAATTGACAAATTTGGAAGGTTCG 57.157 33.333 21.74 0.00 42.97 3.95
4905 5226 1.202651 CCTCCAACAGTTGTTCGGTCT 60.203 52.381 12.42 0.00 35.83 3.85
5035 5356 4.555262 TGTATTTGGCAAAGTAAAGCAGC 58.445 39.130 18.61 0.00 0.00 5.25
5223 5544 5.692204 CCGTAGTCATGAAGTAATTAGGCAG 59.308 44.000 0.00 0.00 0.00 4.85
5277 5598 3.897239 TGTGGAACAGCCCAAATATAGG 58.103 45.455 0.00 0.00 45.67 2.57
5449 5770 0.247736 ATCACCTTCTGCTCGTCACC 59.752 55.000 0.00 0.00 0.00 4.02
5553 5874 0.952280 CTCATGCACATCATCCTGCC 59.048 55.000 0.00 0.00 31.79 4.85
5616 5937 8.970859 AGTCTTTTCTCTCTTTTCTCATTTCA 57.029 30.769 0.00 0.00 0.00 2.69
5751 6076 3.882288 TGCTTGTCACTGCAATTTGAGTA 59.118 39.130 0.00 0.00 36.15 2.59
5816 6158 2.743938 CACTGCTATGTCGGTGATACC 58.256 52.381 2.81 0.00 44.09 2.73
5829 6171 3.050619 GGTGATACCGATGAAACTAGCG 58.949 50.000 0.00 0.00 0.00 4.26
5830 6172 3.243301 GGTGATACCGATGAAACTAGCGA 60.243 47.826 0.00 0.00 0.00 4.93
5831 6173 4.357142 GTGATACCGATGAAACTAGCGAA 58.643 43.478 0.00 0.00 0.00 4.70
5854 6196 7.330454 CGAATAGTAGCTTAATGCATGTCTCAT 59.670 37.037 0.00 0.00 45.94 2.90
5860 6202 5.597182 AGCTTAATGCATGTCTCATGGAATT 59.403 36.000 0.00 6.24 45.94 2.17
5872 6214 9.696917 ATGTCTCATGGAATTTCTTACAAAAAC 57.303 29.630 0.00 0.00 0.00 2.43
5910 6252 8.861033 TCATCTTTGTTCTCTGTTTCAATTTG 57.139 30.769 0.00 0.00 0.00 2.32
5912 6254 8.749499 CATCTTTGTTCTCTGTTTCAATTTGTC 58.251 33.333 0.00 0.00 0.00 3.18
5943 6286 3.567585 GCTAGGAAATCTTTCATCCTGCC 59.432 47.826 3.86 0.00 43.34 4.85
5946 6289 5.393068 AGGAAATCTTTCATCCTGCCATA 57.607 39.130 5.14 0.00 41.96 2.74
6036 6379 2.736347 TCCTCTCCTGCTACTTACCAC 58.264 52.381 0.00 0.00 0.00 4.16
6097 6440 1.180456 CCTGTCAATGGGCACTTGCA 61.180 55.000 3.15 0.00 44.36 4.08
6103 6446 0.899720 AATGGGCACTTGCAATCCTG 59.100 50.000 0.00 0.00 44.36 3.86
6157 6500 1.094073 AAGCTAGCATGCTGAAGGCG 61.094 55.000 30.42 11.68 43.24 5.52
6170 6513 3.305744 GCTGAAGGCGGTCCAAAATAAAA 60.306 43.478 0.00 0.00 33.74 1.52
6171 6514 4.620567 GCTGAAGGCGGTCCAAAATAAAAT 60.621 41.667 0.00 0.00 33.74 1.82
6172 6515 5.393678 GCTGAAGGCGGTCCAAAATAAAATA 60.394 40.000 0.00 0.00 33.74 1.40
6173 6516 6.591750 TGAAGGCGGTCCAAAATAAAATAA 57.408 33.333 0.00 0.00 33.74 1.40
6220 6563 0.868406 CTGTTTTCAGGAGGTCGCAC 59.132 55.000 0.00 0.00 43.61 5.34
6286 6629 8.657074 TGTTATAGCATGTAAATACTGGTGTC 57.343 34.615 0.00 0.00 0.00 3.67
6294 6637 3.553828 AAATACTGGTGTCGGGGTATG 57.446 47.619 0.00 0.00 0.00 2.39
6295 6638 2.464796 ATACTGGTGTCGGGGTATGA 57.535 50.000 0.00 0.00 0.00 2.15
6296 6639 1.771565 TACTGGTGTCGGGGTATGAG 58.228 55.000 0.00 0.00 0.00 2.90
6297 6640 0.976073 ACTGGTGTCGGGGTATGAGG 60.976 60.000 0.00 0.00 0.00 3.86
6298 6641 2.311688 CTGGTGTCGGGGTATGAGGC 62.312 65.000 0.00 0.00 0.00 4.70
6528 6871 5.943416 ACCGATAGATTCTCGATGATTCTCT 59.057 40.000 10.51 4.57 38.38 3.10
6545 6888 8.063200 TGATTCTCTCGAATAGTAAACCTGAA 57.937 34.615 0.00 0.00 39.89 3.02
6546 6889 8.696374 TGATTCTCTCGAATAGTAAACCTGAAT 58.304 33.333 0.00 0.00 39.89 2.57
6547 6890 9.535878 GATTCTCTCGAATAGTAAACCTGAATT 57.464 33.333 0.00 0.00 39.89 2.17
6549 6892 8.703604 TCTCTCGAATAGTAAACCTGAATTTG 57.296 34.615 0.00 0.00 0.00 2.32
6550 6893 7.277981 TCTCTCGAATAGTAAACCTGAATTTGC 59.722 37.037 0.00 0.00 0.00 3.68
6551 6894 6.876789 TCTCGAATAGTAAACCTGAATTTGCA 59.123 34.615 0.00 0.00 0.00 4.08
6552 6895 7.552687 TCTCGAATAGTAAACCTGAATTTGCAT 59.447 33.333 0.00 0.00 0.00 3.96
6553 6896 7.693952 TCGAATAGTAAACCTGAATTTGCATC 58.306 34.615 0.00 0.00 0.00 3.91
6554 6897 7.335673 TCGAATAGTAAACCTGAATTTGCATCA 59.664 33.333 0.00 0.00 0.00 3.07
6560 6903 2.865343 CTGAATTTGCATCAGGAGGC 57.135 50.000 7.76 0.00 40.48 4.70
6566 6909 3.719816 TGCATCAGGAGGCATGATC 57.280 52.632 4.30 0.00 43.66 2.92
6603 6946 1.650153 CATTGCGCCTTGAATTTGACG 59.350 47.619 4.18 0.00 0.00 4.35
6658 7001 3.136123 CCCCTGATGGCAGTTGCG 61.136 66.667 0.00 0.00 43.26 4.85
6669 7012 0.388520 GCAGTTGCGGGGATTTCAAC 60.389 55.000 0.00 0.00 40.08 3.18
6755 7098 9.567776 TCTAGGAAATTTGTGTCTGAAAATGTA 57.432 29.630 0.00 0.00 0.00 2.29
6799 7142 1.135859 GTGAGCGGCAATAGCATATGC 60.136 52.381 20.36 20.36 44.61 3.14
6834 7177 3.254166 AGCGTGATTGTGAGCTTCATTTT 59.746 39.130 0.00 0.00 36.41 1.82
6871 7214 2.613026 TGTGAAACTGTGTCGATGGT 57.387 45.000 0.00 0.00 38.04 3.55
6939 7283 3.195610 ACTGGATGTAAATGACTCGCAGA 59.804 43.478 0.00 0.00 0.00 4.26
6952 7296 3.664107 ACTCGCAGACTGAAAATGCTAA 58.336 40.909 6.65 0.00 37.81 3.09
6978 7322 0.543749 GCTTGAGCTCCATGTAGGGT 59.456 55.000 12.15 0.00 38.24 4.34
6981 7325 2.180946 TGAGCTCCATGTAGGGTGAT 57.819 50.000 12.15 0.00 38.24 3.06
6984 7341 3.266772 TGAGCTCCATGTAGGGTGATTTT 59.733 43.478 12.15 0.00 38.24 1.82
6985 7342 4.263905 TGAGCTCCATGTAGGGTGATTTTT 60.264 41.667 12.15 0.00 38.24 1.94
7044 7402 8.717717 TCTGGAAAATTCACATATACCAGAGAT 58.282 33.333 0.00 0.00 44.69 2.75
7127 7488 5.535753 AAAACTTTGTGCCTTCTTAGCAT 57.464 34.783 0.00 0.00 43.29 3.79
7128 7489 6.648879 AAAACTTTGTGCCTTCTTAGCATA 57.351 33.333 0.00 0.00 43.29 3.14
7129 7490 6.648879 AAACTTTGTGCCTTCTTAGCATAA 57.351 33.333 0.00 0.00 43.29 1.90
7130 7491 5.886960 ACTTTGTGCCTTCTTAGCATAAG 57.113 39.130 0.00 0.00 41.46 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.618709 GCAAGAACAACTACTGCACCTT 59.381 45.455 0.00 0.00 33.87 3.50
1 2 2.222027 GCAAGAACAACTACTGCACCT 58.778 47.619 0.00 0.00 33.87 4.00
2 3 1.946768 TGCAAGAACAACTACTGCACC 59.053 47.619 0.00 0.00 37.41 5.01
3 4 2.872245 TCTGCAAGAACAACTACTGCAC 59.128 45.455 0.00 0.00 42.31 4.57
4 5 3.192541 TCTGCAAGAACAACTACTGCA 57.807 42.857 0.00 0.00 42.31 4.41
24 25 1.268899 CTACGAGGGACGACAGTTGTT 59.731 52.381 0.00 0.00 45.77 2.83
85 86 1.272648 TGCTCCCCTTTCTTCCCATTG 60.273 52.381 0.00 0.00 0.00 2.82
90 91 0.609406 GGTGTGCTCCCCTTTCTTCC 60.609 60.000 0.00 0.00 0.00 3.46
107 109 0.973632 TACTTCCGTGCATCACTGGT 59.026 50.000 0.00 0.00 32.77 4.00
112 114 1.270571 TGCAAGTACTTCCGTGCATCA 60.271 47.619 14.48 0.00 41.85 3.07
119 121 2.805671 TGTGATGTTGCAAGTACTTCCG 59.194 45.455 4.77 0.00 0.00 4.30
137 139 1.206745 AAGTCGTCGTCGCTGTTGTG 61.207 55.000 0.00 0.00 36.96 3.33
139 141 1.206745 ACAAGTCGTCGTCGCTGTTG 61.207 55.000 0.00 3.65 36.96 3.33
142 144 1.396543 GCTACAAGTCGTCGTCGCTG 61.397 60.000 0.00 0.00 36.96 5.18
153 155 3.431766 GGAATATCACCACGGCTACAAGT 60.432 47.826 0.00 0.00 0.00 3.16
158 160 1.691976 CAGGGAATATCACCACGGCTA 59.308 52.381 0.00 0.00 0.00 3.93
192 194 2.621055 TCACGTGCCATAAGCTTTTTGT 59.379 40.909 11.67 0.00 44.23 2.83
224 226 4.987285 CCTCATCTATCACAATCGGACTTG 59.013 45.833 0.00 0.00 0.00 3.16
226 228 3.576118 CCCTCATCTATCACAATCGGACT 59.424 47.826 0.00 0.00 0.00 3.85
228 230 3.844640 TCCCTCATCTATCACAATCGGA 58.155 45.455 0.00 0.00 0.00 4.55
229 231 4.607293 TTCCCTCATCTATCACAATCGG 57.393 45.455 0.00 0.00 0.00 4.18
231 233 5.072329 TCCCTTTCCCTCATCTATCACAATC 59.928 44.000 0.00 0.00 0.00 2.67
232 234 4.977739 TCCCTTTCCCTCATCTATCACAAT 59.022 41.667 0.00 0.00 0.00 2.71
233 235 4.370776 TCCCTTTCCCTCATCTATCACAA 58.629 43.478 0.00 0.00 0.00 3.33
234 236 4.007581 TCCCTTTCCCTCATCTATCACA 57.992 45.455 0.00 0.00 0.00 3.58
272 276 2.249413 CTGGGCCTCTGTAGCACCAG 62.249 65.000 4.53 0.00 40.15 4.00
282 286 1.992277 CAGTAGCACCTGGGCCTCT 60.992 63.158 4.53 0.00 0.00 3.69
313 317 0.465705 TTGAGGATCCGATGGCTCAC 59.534 55.000 5.98 0.00 0.00 3.51
316 320 1.270518 CGATTTGAGGATCCGATGGCT 60.271 52.381 5.98 0.00 0.00 4.75
327 331 5.966636 TTCATATGTCGTTCGATTTGAGG 57.033 39.130 1.90 0.00 0.00 3.86
345 349 5.316167 TCCAGCAGATACAACAACTTTCAT 58.684 37.500 0.00 0.00 0.00 2.57
348 352 5.564550 AGATCCAGCAGATACAACAACTTT 58.435 37.500 0.00 0.00 34.42 2.66
391 395 9.113838 TGCAACATTTGAAAAATAGCCTTTTAA 57.886 25.926 0.00 0.00 0.00 1.52
401 405 8.347035 CCAGAAAATCTGCAACATTTGAAAAAT 58.653 29.630 1.79 0.00 42.98 1.82
406 411 4.588106 TCCCAGAAAATCTGCAACATTTGA 59.412 37.500 1.79 0.00 42.98 2.69
420 425 3.765511 CAGATTGAATGGCTCCCAGAAAA 59.234 43.478 0.00 0.00 36.75 2.29
423 428 2.172082 CTCAGATTGAATGGCTCCCAGA 59.828 50.000 0.00 0.00 36.75 3.86
424 429 2.172082 TCTCAGATTGAATGGCTCCCAG 59.828 50.000 0.00 0.00 36.75 4.45
435 440 2.632377 GCCGTTGGATTCTCAGATTGA 58.368 47.619 0.00 0.00 0.00 2.57
457 462 2.602694 GCTACCGTGATACGAGCTTCTC 60.603 54.545 2.52 0.00 46.05 2.87
459 464 1.065102 TGCTACCGTGATACGAGCTTC 59.935 52.381 13.61 0.00 46.05 3.86
460 465 1.100510 TGCTACCGTGATACGAGCTT 58.899 50.000 13.61 0.00 46.05 3.74
463 468 2.451132 CAAGTGCTACCGTGATACGAG 58.549 52.381 2.52 0.00 46.05 4.18
464 469 1.133598 CCAAGTGCTACCGTGATACGA 59.866 52.381 2.52 0.00 46.05 3.43
481 486 4.382320 GGTGCTACCGACGCCCAA 62.382 66.667 0.00 0.00 0.00 4.12
487 492 3.305471 GGAGAATATCTGGTGCTACCGAC 60.305 52.174 0.00 0.00 42.58 4.79
499 504 4.660771 ACCTTCATTTCCGGGAGAATATCT 59.339 41.667 0.00 0.00 33.44 1.98
510 515 1.470098 CAAGAGCCACCTTCATTTCCG 59.530 52.381 0.00 0.00 0.00 4.30
511 516 1.821136 CCAAGAGCCACCTTCATTTCC 59.179 52.381 0.00 0.00 0.00 3.13
528 533 1.819208 CAGGCGCCGAATCATCCAA 60.819 57.895 23.20 0.00 0.00 3.53
544 549 0.807667 GTGCATCCTCCACGTAGCAG 60.808 60.000 0.00 0.00 32.03 4.24
586 591 0.764271 TGAGGATGCCACAAGTGTCA 59.236 50.000 0.00 0.00 0.00 3.58
602 607 7.521509 AAACGTTTCTAATCTATCGGTTGAG 57.478 36.000 7.96 0.00 0.00 3.02
689 695 7.603963 TGACAGCGTAAATGATTTTAGCTTA 57.396 32.000 14.22 5.06 33.43 3.09
751 758 4.373116 GCGTGCGAGGACAAGGGA 62.373 66.667 0.00 0.00 0.00 4.20
792 799 1.065126 GGAGTGGAAATGGTGGGAGAG 60.065 57.143 0.00 0.00 0.00 3.20
793 800 0.991920 GGAGTGGAAATGGTGGGAGA 59.008 55.000 0.00 0.00 0.00 3.71
794 801 0.698238 TGGAGTGGAAATGGTGGGAG 59.302 55.000 0.00 0.00 0.00 4.30
795 802 0.404040 GTGGAGTGGAAATGGTGGGA 59.596 55.000 0.00 0.00 0.00 4.37
895 902 2.351244 GGCTAGGGTTTGGGCTTGC 61.351 63.158 0.00 0.00 0.00 4.01
1058 1068 4.757692 TCCTCTTCTTCTTCCTTCTCCTT 58.242 43.478 0.00 0.00 0.00 3.36
1089 1099 4.457496 GACCTGCGGCAGCTGCTA 62.457 66.667 35.82 21.69 45.42 3.49
1294 1304 7.851963 CACAACGAGACCGATTTAAAAACTAAA 59.148 33.333 0.00 0.00 39.50 1.85
1310 1320 2.308039 GGCGTCCACACAACGAGAC 61.308 63.158 0.00 0.00 42.62 3.36
1366 1376 4.302455 CTTGAATCACTCGCGAATATCCT 58.698 43.478 11.33 0.00 0.00 3.24
1370 1380 2.887337 TGCTTGAATCACTCGCGAATA 58.113 42.857 11.33 0.00 0.00 1.75
1414 1425 6.038356 CCAGATGCAAGTATTTTGGTTCATC 58.962 40.000 0.00 0.00 0.00 2.92
1470 1481 9.704098 GCAGAAGCTAATAAAAACATGTACTAC 57.296 33.333 0.00 0.00 37.91 2.73
1471 1482 8.889717 GGCAGAAGCTAATAAAAACATGTACTA 58.110 33.333 0.00 0.00 41.70 1.82
1472 1483 7.393234 TGGCAGAAGCTAATAAAAACATGTACT 59.607 33.333 0.00 0.00 41.70 2.73
1473 1484 7.535139 TGGCAGAAGCTAATAAAAACATGTAC 58.465 34.615 0.00 0.00 41.70 2.90
1536 1547 0.392998 ACCGGCAAGAATAGCACCTG 60.393 55.000 0.00 0.00 0.00 4.00
1566 1580 0.958822 GTGGTTTGGCCGACATTTCT 59.041 50.000 10.79 0.00 41.21 2.52
1766 1780 1.870402 ACGCATCGTTCACACATTGAA 59.130 42.857 0.00 0.00 42.26 2.69
1923 1938 5.719563 TCAATACCCAGATCTTCAGTACACA 59.280 40.000 0.00 0.00 0.00 3.72
1924 1939 6.222038 TCAATACCCAGATCTTCAGTACAC 57.778 41.667 0.00 0.00 0.00 2.90
1925 1940 8.727100 ATATCAATACCCAGATCTTCAGTACA 57.273 34.615 0.00 0.00 0.00 2.90
1928 1943 8.263640 GCATATATCAATACCCAGATCTTCAGT 58.736 37.037 0.00 0.00 0.00 3.41
1929 1944 8.484575 AGCATATATCAATACCCAGATCTTCAG 58.515 37.037 0.00 0.00 0.00 3.02
2073 2089 3.538591 TGCAGTTGCCATGATCTTCTAG 58.461 45.455 1.06 0.00 41.18 2.43
2165 2181 2.820330 CCCATGAAACGTTGCTGTTTT 58.180 42.857 8.00 0.00 41.89 2.43
2170 2186 2.625823 CGGCCCATGAAACGTTGCT 61.626 57.895 8.00 0.00 0.00 3.91
2199 2215 2.741759 ATGGCAATTTTTGTCGGGAC 57.258 45.000 0.00 0.00 38.34 4.46
2228 2244 8.548025 TGATCTAATCTATCCAAAAGGTGTTGA 58.452 33.333 0.00 0.00 0.00 3.18
2304 2320 2.023673 TCTATTCGGCAAAGCATTGGG 58.976 47.619 3.55 0.00 37.02 4.12
2305 2321 2.423185 TGTCTATTCGGCAAAGCATTGG 59.577 45.455 3.55 0.00 37.02 3.16
2441 2458 2.481276 GCAAGTTTTGTTGGGACCTCAC 60.481 50.000 0.00 0.00 0.00 3.51
2570 2587 3.612955 GCGGCAGTTTTTGTTAAGGCATA 60.613 43.478 0.00 0.00 0.00 3.14
2675 2693 9.632807 CTTCCATCAGTTCAATATAGCTACTAC 57.367 37.037 0.00 0.00 0.00 2.73
2676 2694 9.368416 ACTTCCATCAGTTCAATATAGCTACTA 57.632 33.333 0.00 0.00 0.00 1.82
2677 2695 8.147058 CACTTCCATCAGTTCAATATAGCTACT 58.853 37.037 0.00 0.00 0.00 2.57
2705 2723 9.941325 AAATTATATCTCCAAGAGCAGACATAG 57.059 33.333 0.00 0.00 0.00 2.23
2712 2730 8.985315 ACATCAAAATTATATCTCCAAGAGCA 57.015 30.769 0.00 0.00 0.00 4.26
2753 2771 1.134521 TCCGTGCATTGACCATACTCC 60.135 52.381 0.00 0.00 0.00 3.85
2783 2801 8.664798 TCACTGTAGACAAAATTATGCATACAC 58.335 33.333 5.74 0.00 0.00 2.90
2815 2852 4.510167 TTCCCTGATTCCCTGAAAGATC 57.490 45.455 0.00 0.00 34.07 2.75
2922 2959 1.427368 TGTTGGATGCCCTAGGTGTTT 59.573 47.619 8.29 0.00 0.00 2.83
3010 3047 6.434340 AGGACCATGTTCCATTTTTCTACTTC 59.566 38.462 12.37 0.00 38.25 3.01
3060 3098 4.406456 TCAAGGCATTTTTGCTCCTAGAA 58.594 39.130 0.00 0.00 34.73 2.10
3061 3099 4.032960 TCAAGGCATTTTTGCTCCTAGA 57.967 40.909 0.00 0.00 34.73 2.43
3198 3236 0.313672 TTGCTAGCCAACTTTTGCCG 59.686 50.000 13.29 0.00 0.00 5.69
3317 3355 1.168714 GGTTGCCATCCACACTTCTC 58.831 55.000 0.00 0.00 0.00 2.87
3382 3438 3.444388 AGAGACGGACATTACCTCAACTC 59.556 47.826 0.00 0.00 0.00 3.01
3398 3454 6.063272 GCGAAGTAAACAAGTAAAAGAGACG 58.937 40.000 0.00 0.00 0.00 4.18
3421 3477 7.105241 AGAAGTCAAAATGGGAATCATTAGC 57.895 36.000 0.00 0.00 44.68 3.09
3590 3646 7.707035 AGCTTAGGTATACTTTCATTCAACTCG 59.293 37.037 2.25 0.00 0.00 4.18
3704 3760 8.711457 CAGGAAGAACATTCGCAAAATAAAAAT 58.289 29.630 0.00 0.00 0.00 1.82
3705 3761 7.708752 ACAGGAAGAACATTCGCAAAATAAAAA 59.291 29.630 0.00 0.00 0.00 1.94
3706 3762 7.206687 ACAGGAAGAACATTCGCAAAATAAAA 58.793 30.769 0.00 0.00 0.00 1.52
3707 3763 6.744112 ACAGGAAGAACATTCGCAAAATAAA 58.256 32.000 0.00 0.00 0.00 1.40
3708 3764 6.016693 TGACAGGAAGAACATTCGCAAAATAA 60.017 34.615 0.00 0.00 0.00 1.40
3709 3765 5.471797 TGACAGGAAGAACATTCGCAAAATA 59.528 36.000 0.00 0.00 0.00 1.40
3710 3766 4.278170 TGACAGGAAGAACATTCGCAAAAT 59.722 37.500 0.00 0.00 0.00 1.82
3748 3804 9.647797 AATTAGTAATCACGTTGACAGATTGTA 57.352 29.630 8.00 0.00 34.19 2.41
3768 3824 9.975218 AACCTGTACAATCATTTAGGAATTAGT 57.025 29.630 0.00 0.00 0.00 2.24
3771 3827 7.397192 AGCAACCTGTACAATCATTTAGGAATT 59.603 33.333 0.00 0.00 0.00 2.17
3894 3950 6.111382 TGAAATGAGACCTAAGAATGCTCAG 58.889 40.000 0.00 0.00 38.79 3.35
4086 4142 5.925506 TTATCCTGTACCTTGTCGATTGA 57.074 39.130 0.00 0.00 0.00 2.57
4121 4177 2.158325 TCCTGCCCTCATTTGGTCTTTT 60.158 45.455 0.00 0.00 0.00 2.27
4204 4260 8.715998 CATGACATGGTAGTTATTGCTAGAATC 58.284 37.037 7.60 0.00 0.00 2.52
4243 4299 1.458398 TTGGTGGTGACAAGTGTGTG 58.542 50.000 0.00 0.00 46.06 3.82
4266 4322 6.187727 ACCTTTCAGATTTGGTTCTACAGA 57.812 37.500 0.00 0.00 0.00 3.41
4370 4431 5.279607 ACATGGTTGTTCTGCTTTTGCATAT 60.280 36.000 0.00 0.00 44.03 1.78
4520 4581 2.772568 TGTGTTTCTTGCATGTTCGG 57.227 45.000 0.00 0.00 0.00 4.30
4649 4970 5.451381 CCCATACTGTCGTACTGCTATTGAA 60.451 44.000 0.00 0.00 0.00 2.69
4720 5041 5.964887 CAACATTTTGGAACGTTCAACAT 57.035 34.783 28.24 15.70 0.00 2.71
4875 5196 0.951040 CTGTTGGAGGAGCAACCGTC 60.951 60.000 0.00 0.00 44.74 4.79
4905 5226 8.556589 TGATTCCCAACTTCTAGAATAATGGAA 58.443 33.333 23.08 21.57 33.16 3.53
5035 5356 3.719840 CGCAGATACGACGAAAGACTTAG 59.280 47.826 0.00 0.00 34.06 2.18
5223 5544 1.028868 GTGCAGGAGATGGAGGCAAC 61.029 60.000 0.00 0.00 36.08 4.17
5277 5598 1.216990 AACCAGATGGGGATGGAGAC 58.783 55.000 3.48 0.00 42.91 3.36
5449 5770 4.097892 GTGCCTGTTGGGAATATTTGTAGG 59.902 45.833 0.00 0.00 34.74 3.18
5582 5903 6.793492 AAGAGAGAAAAGACTAACATGTGC 57.207 37.500 0.00 0.00 0.00 4.57
5616 5937 0.538977 AGCAATGTCTGGCAGCTGTT 60.539 50.000 16.64 0.83 33.67 3.16
5690 6015 4.666512 AGGTCTGCATGGAATAAAACTGT 58.333 39.130 0.00 0.00 0.00 3.55
5770 6095 0.473755 ACATGGACTCCACAGCACAA 59.526 50.000 0.00 0.00 35.80 3.33
5774 6099 2.744202 CAGTTTACATGGACTCCACAGC 59.256 50.000 0.00 0.00 35.80 4.40
5816 6158 5.453648 AGCTACTATTCGCTAGTTTCATCG 58.546 41.667 3.31 0.00 41.10 3.84
5822 6164 6.513180 TGCATTAAGCTACTATTCGCTAGTT 58.487 36.000 3.31 0.00 45.94 2.24
5829 6171 7.953158 TGAGACATGCATTAAGCTACTATTC 57.047 36.000 0.00 0.00 45.94 1.75
5830 6172 7.389884 CCATGAGACATGCATTAAGCTACTATT 59.610 37.037 0.00 0.00 45.94 1.73
5831 6173 6.877855 CCATGAGACATGCATTAAGCTACTAT 59.122 38.462 0.00 0.00 45.94 2.12
5854 6196 7.271511 AGCATGTGTTTTTGTAAGAAATTCCA 58.728 30.769 0.00 0.00 0.00 3.53
5872 6214 8.206325 AGAACAAAGATGATACTAAGCATGTG 57.794 34.615 0.00 0.00 30.10 3.21
5908 6250 9.466497 AAAGATTTCCTAGCATGAATAAGACAA 57.534 29.630 0.00 0.00 0.00 3.18
5910 6252 9.113838 TGAAAGATTTCCTAGCATGAATAAGAC 57.886 33.333 0.00 0.00 36.36 3.01
5931 6274 4.400251 ACAACACATATGGCAGGATGAAAG 59.600 41.667 16.60 9.54 39.69 2.62
5943 6286 9.920826 GATAGTTTACACATGACAACACATATG 57.079 33.333 0.00 0.00 31.91 1.78
5946 6289 6.939730 TGGATAGTTTACACATGACAACACAT 59.060 34.615 0.00 0.00 0.00 3.21
6097 6440 1.069049 GCCAGCAAACACAACAGGATT 59.931 47.619 0.00 0.00 0.00 3.01
6103 6446 2.027460 CCCGCCAGCAAACACAAC 59.973 61.111 0.00 0.00 0.00 3.32
6170 6513 7.724490 AGCTCTTGAAGGCCTTTTATTTTAT 57.276 32.000 21.54 0.00 0.00 1.40
6171 6514 7.148069 GCTAGCTCTTGAAGGCCTTTTATTTTA 60.148 37.037 21.54 6.84 0.00 1.52
6172 6515 6.350528 GCTAGCTCTTGAAGGCCTTTTATTTT 60.351 38.462 21.54 6.00 0.00 1.82
6173 6516 5.126222 GCTAGCTCTTGAAGGCCTTTTATTT 59.874 40.000 21.54 0.00 0.00 1.40
6181 6524 1.307097 CATGCTAGCTCTTGAAGGCC 58.693 55.000 17.23 0.00 0.00 5.19
6220 6563 0.452784 GCGCAGTTTTTCACGCCTAG 60.453 55.000 0.30 0.00 45.35 3.02
6257 6600 8.609176 ACCAGTATTTACATGCTATAACAAACG 58.391 33.333 0.00 0.00 0.00 3.60
6286 6629 3.466791 CTGCCTGCCTCATACCCCG 62.467 68.421 0.00 0.00 0.00 5.73
6294 6637 3.060615 CAGTTGCCTGCCTGCCTC 61.061 66.667 0.00 0.00 0.00 4.70
6295 6638 4.673375 CCAGTTGCCTGCCTGCCT 62.673 66.667 0.00 0.00 37.38 4.75
6298 6641 4.980702 TGCCCAGTTGCCTGCCTG 62.981 66.667 0.00 0.00 37.38 4.85
6528 6871 7.335673 TGATGCAAATTCAGGTTTACTATTCGA 59.664 33.333 0.00 0.00 0.00 3.71
6545 6888 2.447408 TCATGCCTCCTGATGCAAAT 57.553 45.000 1.27 0.00 41.50 2.32
6546 6889 2.304092 GATCATGCCTCCTGATGCAAA 58.696 47.619 1.27 0.00 41.50 3.68
6547 6890 1.213430 TGATCATGCCTCCTGATGCAA 59.787 47.619 1.27 0.00 41.50 4.08
6549 6892 1.813178 CATGATCATGCCTCCTGATGC 59.187 52.381 22.20 0.00 33.56 3.91
6550 6893 2.814336 CACATGATCATGCCTCCTGATG 59.186 50.000 31.17 17.42 42.39 3.07
6551 6894 2.442126 ACACATGATCATGCCTCCTGAT 59.558 45.455 31.17 10.11 42.39 2.90
6552 6895 1.841919 ACACATGATCATGCCTCCTGA 59.158 47.619 31.17 0.00 42.39 3.86
6553 6896 2.343484 ACACATGATCATGCCTCCTG 57.657 50.000 31.17 23.59 42.39 3.86
6554 6897 3.377253 AAACACATGATCATGCCTCCT 57.623 42.857 31.17 12.22 42.39 3.69
6556 6899 4.707030 TCAAAACACATGATCATGCCTC 57.293 40.909 31.17 0.00 42.39 4.70
6557 6900 4.707934 TCATCAAAACACATGATCATGCCT 59.292 37.500 31.17 16.19 42.39 4.75
6558 6901 4.802039 GTCATCAAAACACATGATCATGCC 59.198 41.667 31.17 5.31 42.39 4.40
6559 6902 5.287752 GTGTCATCAAAACACATGATCATGC 59.712 40.000 31.17 13.51 45.05 4.06
6560 6903 6.864560 GTGTCATCAAAACACATGATCATG 57.135 37.500 29.95 29.95 45.05 3.07
6644 6987 2.898920 ATCCCCGCAACTGCCATCAG 62.899 60.000 0.00 0.00 45.71 2.90
6658 7001 1.215382 GGCTTGCGTTGAAATCCCC 59.785 57.895 0.00 0.00 0.00 4.81
6764 7107 3.535860 CGCTCACGTGAAAGAAAGAAAG 58.464 45.455 20.49 4.74 33.53 2.62
6766 7109 1.864711 CCGCTCACGTGAAAGAAAGAA 59.135 47.619 20.49 0.00 37.70 2.52
6767 7110 1.497991 CCGCTCACGTGAAAGAAAGA 58.502 50.000 20.49 0.00 37.70 2.52
6799 7142 3.349006 ACGCTGCTTTGCACCGAG 61.349 61.111 13.12 0.00 39.60 4.63
6939 7283 5.990120 AGCTCCATTTTAGCATTTTCAGT 57.010 34.783 0.00 0.00 42.62 3.41
7102 7463 5.127031 TGCTAAGAAGGCACAAAGTTTTTCT 59.873 36.000 0.00 0.00 34.56 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.