Multiple sequence alignment - TraesCS1B01G247600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G247600 chr1B 100.000 3402 0 0 1 3402 438159142 438162543 0.000000e+00 6283
1 TraesCS1B01G247600 chr1B 94.648 1887 68 16 632 2513 594014821 594016679 0.000000e+00 2894
2 TraesCS1B01G247600 chr1B 92.063 1915 87 27 632 2513 673447337 673445455 0.000000e+00 2634
3 TraesCS1B01G247600 chr1B 95.211 1566 46 15 950 2513 649429258 649430796 0.000000e+00 2449
4 TraesCS1B01G247600 chr1B 96.966 890 27 0 2506 3395 594016710 594017599 0.000000e+00 1495
5 TraesCS1B01G247600 chr1B 96.633 891 29 1 2506 3395 649430827 649431717 0.000000e+00 1478
6 TraesCS1B01G247600 chr1B 93.082 636 36 3 1 631 256293789 256294421 0.000000e+00 924
7 TraesCS1B01G247600 chr1B 92.767 636 38 3 1 631 228216067 228215435 0.000000e+00 913
8 TraesCS1B01G247600 chr1B 92.913 635 34 6 1 628 491409887 491410517 0.000000e+00 913
9 TraesCS1B01G247600 chr1B 84.000 175 8 2 2506 2660 61448991 61448817 2.110000e-32 150
10 TraesCS1B01G247600 chr6B 99.083 1744 16 0 1659 3402 558313354 558311611 0.000000e+00 3133
11 TraesCS1B01G247600 chr6B 98.330 1317 20 1 632 1948 169167830 169166516 0.000000e+00 2309
12 TraesCS1B01G247600 chr6B 97.013 837 22 1 630 1463 558314209 558313373 0.000000e+00 1404
13 TraesCS1B01G247600 chr6B 92.626 895 37 15 918 1810 151206940 151206073 0.000000e+00 1260
14 TraesCS1B01G247600 chr7B 95.587 1881 58 12 633 2513 506548811 506550666 0.000000e+00 2990
15 TraesCS1B01G247600 chr7B 98.026 912 18 0 2484 3395 506550669 506551580 0.000000e+00 1585
16 TraesCS1B01G247600 chr7B 93.729 893 33 1 2506 3398 145546256 145545387 0.000000e+00 1317
17 TraesCS1B01G247600 chr3B 93.763 1892 77 19 632 2513 52631696 52629836 0.000000e+00 2802
18 TraesCS1B01G247600 chr3B 93.763 1892 76 19 632 2513 53026235 53028094 0.000000e+00 2802
19 TraesCS1B01G247600 chr3B 96.647 686 22 1 2701 3385 53028728 53029413 0.000000e+00 1138
20 TraesCS1B01G247600 chr3B 93.354 632 33 5 1 627 70990234 70989607 0.000000e+00 926
21 TraesCS1B01G247600 chr3B 92.790 638 33 7 1 631 166566081 166566712 0.000000e+00 911
22 TraesCS1B01G247600 chr2B 91.436 1915 85 34 632 2513 453819523 453821391 0.000000e+00 2555
23 TraesCS1B01G247600 chr2B 96.794 655 19 1 2731 3385 794529885 794530537 0.000000e+00 1092
24 TraesCS1B01G247600 chr2B 96.061 660 26 0 2736 3395 453822386 453823045 0.000000e+00 1075
25 TraesCS1B01G247600 chr2B 92.936 637 32 6 1 631 183723325 183722696 0.000000e+00 915
26 TraesCS1B01G247600 chr5B 90.949 1370 49 25 632 1995 567014791 567013491 0.000000e+00 1773
27 TraesCS1B01G247600 chr5B 98.096 788 15 0 1726 2513 578450926 578451713 0.000000e+00 1373
28 TraesCS1B01G247600 chr5B 93.729 893 33 1 2506 3398 567004237 567003368 0.000000e+00 1317
29 TraesCS1B01G247600 chr5B 93.134 903 26 2 2506 3395 578451744 578452623 0.000000e+00 1291
30 TraesCS1B01G247600 chr5B 93.711 636 32 3 1 631 381852818 381853450 0.000000e+00 946
31 TraesCS1B01G247600 chr5B 92.779 637 35 6 1 631 490939361 490939992 0.000000e+00 911
32 TraesCS1B01G247600 chrUn 92.991 856 45 7 632 1477 371388781 371389631 0.000000e+00 1234
33 TraesCS1B01G247600 chrUn 96.647 686 22 1 2701 3385 415919906 415919221 0.000000e+00 1138
34 TraesCS1B01G247600 chrUn 96.501 686 23 1 2701 3385 438247095 438247780 0.000000e+00 1133
35 TraesCS1B01G247600 chrUn 90.955 199 7 2 2506 2704 211279252 211279439 1.210000e-64 257
36 TraesCS1B01G247600 chr4B 92.767 636 36 5 1 631 584861658 584862288 0.000000e+00 911
37 TraesCS1B01G247600 chr2A 86.294 197 20 4 2506 2701 753953521 753953711 1.240000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G247600 chr1B 438159142 438162543 3401 False 6283.0 6283 100.0000 1 3402 1 chr1B.!!$F2 3401
1 TraesCS1B01G247600 chr1B 673445455 673447337 1882 True 2634.0 2634 92.0630 632 2513 1 chr1B.!!$R3 1881
2 TraesCS1B01G247600 chr1B 594014821 594017599 2778 False 2194.5 2894 95.8070 632 3395 2 chr1B.!!$F4 2763
3 TraesCS1B01G247600 chr1B 649429258 649431717 2459 False 1963.5 2449 95.9220 950 3395 2 chr1B.!!$F5 2445
4 TraesCS1B01G247600 chr1B 256293789 256294421 632 False 924.0 924 93.0820 1 631 1 chr1B.!!$F1 630
5 TraesCS1B01G247600 chr1B 228215435 228216067 632 True 913.0 913 92.7670 1 631 1 chr1B.!!$R2 630
6 TraesCS1B01G247600 chr1B 491409887 491410517 630 False 913.0 913 92.9130 1 628 1 chr1B.!!$F3 627
7 TraesCS1B01G247600 chr6B 169166516 169167830 1314 True 2309.0 2309 98.3300 632 1948 1 chr6B.!!$R2 1316
8 TraesCS1B01G247600 chr6B 558311611 558314209 2598 True 2268.5 3133 98.0480 630 3402 2 chr6B.!!$R3 2772
9 TraesCS1B01G247600 chr6B 151206073 151206940 867 True 1260.0 1260 92.6260 918 1810 1 chr6B.!!$R1 892
10 TraesCS1B01G247600 chr7B 506548811 506551580 2769 False 2287.5 2990 96.8065 633 3395 2 chr7B.!!$F1 2762
11 TraesCS1B01G247600 chr7B 145545387 145546256 869 True 1317.0 1317 93.7290 2506 3398 1 chr7B.!!$R1 892
12 TraesCS1B01G247600 chr3B 52629836 52631696 1860 True 2802.0 2802 93.7630 632 2513 1 chr3B.!!$R1 1881
13 TraesCS1B01G247600 chr3B 53026235 53029413 3178 False 1970.0 2802 95.2050 632 3385 2 chr3B.!!$F2 2753
14 TraesCS1B01G247600 chr3B 70989607 70990234 627 True 926.0 926 93.3540 1 627 1 chr3B.!!$R2 626
15 TraesCS1B01G247600 chr3B 166566081 166566712 631 False 911.0 911 92.7900 1 631 1 chr3B.!!$F1 630
16 TraesCS1B01G247600 chr2B 453819523 453823045 3522 False 1815.0 2555 93.7485 632 3395 2 chr2B.!!$F2 2763
17 TraesCS1B01G247600 chr2B 794529885 794530537 652 False 1092.0 1092 96.7940 2731 3385 1 chr2B.!!$F1 654
18 TraesCS1B01G247600 chr2B 183722696 183723325 629 True 915.0 915 92.9360 1 631 1 chr2B.!!$R1 630
19 TraesCS1B01G247600 chr5B 567013491 567014791 1300 True 1773.0 1773 90.9490 632 1995 1 chr5B.!!$R2 1363
20 TraesCS1B01G247600 chr5B 578450926 578452623 1697 False 1332.0 1373 95.6150 1726 3395 2 chr5B.!!$F3 1669
21 TraesCS1B01G247600 chr5B 567003368 567004237 869 True 1317.0 1317 93.7290 2506 3398 1 chr5B.!!$R1 892
22 TraesCS1B01G247600 chr5B 381852818 381853450 632 False 946.0 946 93.7110 1 631 1 chr5B.!!$F1 630
23 TraesCS1B01G247600 chr5B 490939361 490939992 631 False 911.0 911 92.7790 1 631 1 chr5B.!!$F2 630
24 TraesCS1B01G247600 chrUn 371388781 371389631 850 False 1234.0 1234 92.9910 632 1477 1 chrUn.!!$F2 845
25 TraesCS1B01G247600 chrUn 415919221 415919906 685 True 1138.0 1138 96.6470 2701 3385 1 chrUn.!!$R1 684
26 TraesCS1B01G247600 chrUn 438247095 438247780 685 False 1133.0 1133 96.5010 2701 3385 1 chrUn.!!$F3 684
27 TraesCS1B01G247600 chr4B 584861658 584862288 630 False 911.0 911 92.7670 1 631 1 chr4B.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 462 0.102300 CACACATCGACCGCTATCCA 59.898 55.0 0.0 0.0 0.0 3.41 F
622 626 0.250234 CCTTCTGTCGCTGGGATCAA 59.750 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 2192 2.086869 CATGTCCTTGTCCACATCCAC 58.913 52.381 0.00 0.00 30.48 4.02 R
2940 3956 2.554032 ACTAGTCAGTGCACAATTTGGC 59.446 45.455 21.04 10.11 32.25 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.402259 CCACGTAAACAACACCTGCAA 59.598 47.619 0.00 0.00 0.00 4.08
25 26 2.159366 CCACGTAAACAACACCTGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
123 125 5.357596 AGGCAAAAACGTGAGGTAAAAAGTA 59.642 36.000 0.00 0.00 0.00 2.24
162 164 2.510874 TCGCGGAACAAATAAATTGCG 58.489 42.857 6.13 0.00 43.13 4.85
171 173 7.033185 GGAACAAATAAATTGCGTCAAGGTAT 58.967 34.615 0.00 0.00 43.13 2.73
172 174 7.544217 GGAACAAATAAATTGCGTCAAGGTATT 59.456 33.333 0.00 3.04 43.13 1.89
234 237 5.731686 GCAAGAGAAAATAGATCGCAAAGGG 60.732 44.000 0.00 0.00 0.00 3.95
253 256 8.419442 GCAAAGGGAAATATGATGAAAAGAGAT 58.581 33.333 0.00 0.00 0.00 2.75
262 266 1.204786 TGAAAAGAGATCCGGGGGCA 61.205 55.000 0.00 0.00 0.00 5.36
335 339 4.881920 ACAATTACTGTTGGGCAATTGAC 58.118 39.130 10.34 6.06 39.59 3.18
336 340 4.343526 ACAATTACTGTTGGGCAATTGACA 59.656 37.500 14.60 6.39 39.59 3.58
337 341 5.163364 ACAATTACTGTTGGGCAATTGACAA 60.163 36.000 14.60 12.31 39.59 3.18
338 342 5.543507 ATTACTGTTGGGCAATTGACAAA 57.456 34.783 14.60 5.02 0.00 2.83
339 343 3.902881 ACTGTTGGGCAATTGACAAAA 57.097 38.095 14.60 9.48 0.00 2.44
340 344 3.530535 ACTGTTGGGCAATTGACAAAAC 58.469 40.909 14.60 16.58 0.00 2.43
341 345 3.197549 ACTGTTGGGCAATTGACAAAACT 59.802 39.130 22.53 7.50 0.00 2.66
342 346 4.190772 CTGTTGGGCAATTGACAAAACTT 58.809 39.130 22.53 0.00 0.00 2.66
343 347 4.187694 TGTTGGGCAATTGACAAAACTTC 58.812 39.130 22.53 5.48 0.00 3.01
344 348 4.187694 GTTGGGCAATTGACAAAACTTCA 58.812 39.130 14.60 0.00 0.00 3.02
345 349 4.478206 TGGGCAATTGACAAAACTTCAA 57.522 36.364 14.60 0.00 37.38 2.69
346 350 4.836825 TGGGCAATTGACAAAACTTCAAA 58.163 34.783 14.60 0.00 36.57 2.69
347 351 5.435291 TGGGCAATTGACAAAACTTCAAAT 58.565 33.333 14.60 0.00 36.57 2.32
348 352 6.586344 TGGGCAATTGACAAAACTTCAAATA 58.414 32.000 14.60 0.00 36.57 1.40
349 353 7.050377 TGGGCAATTGACAAAACTTCAAATAA 58.950 30.769 14.60 0.00 36.57 1.40
350 354 7.718753 TGGGCAATTGACAAAACTTCAAATAAT 59.281 29.630 14.60 0.00 36.57 1.28
351 355 8.567104 GGGCAATTGACAAAACTTCAAATAATT 58.433 29.630 14.60 0.00 36.57 1.40
367 371 8.492673 TCAAATAATTATGACGATATCCAGGC 57.507 34.615 0.00 0.00 0.00 4.85
368 372 8.100164 TCAAATAATTATGACGATATCCAGGCA 58.900 33.333 0.00 0.00 0.00 4.75
369 373 8.729756 CAAATAATTATGACGATATCCAGGCAA 58.270 33.333 0.00 0.00 0.00 4.52
370 374 9.466497 AAATAATTATGACGATATCCAGGCAAT 57.534 29.630 0.00 0.00 0.00 3.56
371 375 6.748333 AATTATGACGATATCCAGGCAATG 57.252 37.500 0.00 0.00 0.00 2.82
372 376 5.482163 TTATGACGATATCCAGGCAATGA 57.518 39.130 0.00 0.00 0.00 2.57
373 377 4.564782 ATGACGATATCCAGGCAATGAT 57.435 40.909 0.00 0.00 0.00 2.45
374 378 3.930336 TGACGATATCCAGGCAATGATC 58.070 45.455 0.00 0.00 0.00 2.92
375 379 3.324556 TGACGATATCCAGGCAATGATCA 59.675 43.478 0.00 0.00 0.00 2.92
376 380 4.019950 TGACGATATCCAGGCAATGATCAT 60.020 41.667 1.18 1.18 0.00 2.45
377 381 4.914983 ACGATATCCAGGCAATGATCATT 58.085 39.130 15.36 15.36 0.00 2.57
378 382 6.053632 ACGATATCCAGGCAATGATCATTA 57.946 37.500 20.32 4.74 0.00 1.90
379 383 6.656902 ACGATATCCAGGCAATGATCATTAT 58.343 36.000 20.32 11.66 0.00 1.28
380 384 7.795047 ACGATATCCAGGCAATGATCATTATA 58.205 34.615 20.32 13.34 0.00 0.98
381 385 8.435187 ACGATATCCAGGCAATGATCATTATAT 58.565 33.333 20.32 16.96 0.00 0.86
382 386 9.933723 CGATATCCAGGCAATGATCATTATATA 57.066 33.333 20.32 11.59 0.00 0.86
385 389 6.359804 TCCAGGCAATGATCATTATATAGGC 58.640 40.000 20.32 18.28 0.00 3.93
386 390 6.069498 TCCAGGCAATGATCATTATATAGGCA 60.069 38.462 20.32 2.79 0.00 4.75
387 391 6.776116 CCAGGCAATGATCATTATATAGGCAT 59.224 38.462 20.32 13.11 0.00 4.40
388 392 7.040617 CCAGGCAATGATCATTATATAGGCATC 60.041 40.741 20.32 7.31 0.00 3.91
389 393 7.501225 CAGGCAATGATCATTATATAGGCATCA 59.499 37.037 20.32 3.39 0.00 3.07
390 394 7.501559 AGGCAATGATCATTATATAGGCATCAC 59.498 37.037 20.32 6.39 0.00 3.06
391 395 7.283807 GGCAATGATCATTATATAGGCATCACA 59.716 37.037 20.32 0.00 0.00 3.58
392 396 8.847196 GCAATGATCATTATATAGGCATCACAT 58.153 33.333 20.32 0.00 0.00 3.21
394 398 9.570468 AATGATCATTATATAGGCATCACATCC 57.430 33.333 19.42 0.00 0.00 3.51
395 399 8.093118 TGATCATTATATAGGCATCACATCCA 57.907 34.615 0.00 0.00 0.00 3.41
396 400 8.550585 TGATCATTATATAGGCATCACATCCAA 58.449 33.333 0.00 0.00 0.00 3.53
397 401 8.975663 ATCATTATATAGGCATCACATCCAAG 57.024 34.615 0.00 0.00 0.00 3.61
398 402 8.149631 TCATTATATAGGCATCACATCCAAGA 57.850 34.615 0.00 0.00 0.00 3.02
399 403 8.775151 TCATTATATAGGCATCACATCCAAGAT 58.225 33.333 0.00 0.00 0.00 2.40
400 404 9.404848 CATTATATAGGCATCACATCCAAGATT 57.595 33.333 0.00 0.00 0.00 2.40
403 407 4.785346 AGGCATCACATCCAAGATTAGT 57.215 40.909 0.00 0.00 0.00 2.24
404 408 5.894298 AGGCATCACATCCAAGATTAGTA 57.106 39.130 0.00 0.00 0.00 1.82
405 409 5.862845 AGGCATCACATCCAAGATTAGTAG 58.137 41.667 0.00 0.00 0.00 2.57
406 410 5.604231 AGGCATCACATCCAAGATTAGTAGA 59.396 40.000 0.00 0.00 0.00 2.59
407 411 5.698545 GGCATCACATCCAAGATTAGTAGAC 59.301 44.000 0.00 0.00 0.00 2.59
408 412 5.698545 GCATCACATCCAAGATTAGTAGACC 59.301 44.000 0.00 0.00 0.00 3.85
409 413 5.515797 TCACATCCAAGATTAGTAGACCG 57.484 43.478 0.00 0.00 0.00 4.79
410 414 5.198207 TCACATCCAAGATTAGTAGACCGA 58.802 41.667 0.00 0.00 0.00 4.69
411 415 5.067413 TCACATCCAAGATTAGTAGACCGAC 59.933 44.000 0.00 0.00 0.00 4.79
412 416 5.067936 CACATCCAAGATTAGTAGACCGACT 59.932 44.000 0.00 0.00 0.00 4.18
413 417 5.299782 ACATCCAAGATTAGTAGACCGACTC 59.700 44.000 0.00 0.00 0.00 3.36
414 418 5.113446 TCCAAGATTAGTAGACCGACTCT 57.887 43.478 0.00 0.00 0.00 3.24
415 419 5.124645 TCCAAGATTAGTAGACCGACTCTC 58.875 45.833 0.00 0.00 0.00 3.20
416 420 4.024725 CCAAGATTAGTAGACCGACTCTCG 60.025 50.000 0.00 0.00 40.07 4.04
417 421 3.132925 AGATTAGTAGACCGACTCTCGC 58.867 50.000 0.00 0.00 38.82 5.03
418 422 1.661341 TTAGTAGACCGACTCTCGCC 58.339 55.000 0.00 0.00 38.82 5.54
419 423 0.829333 TAGTAGACCGACTCTCGCCT 59.171 55.000 0.00 0.00 38.82 5.52
420 424 0.745128 AGTAGACCGACTCTCGCCTG 60.745 60.000 0.00 0.00 38.82 4.85
421 425 2.113433 TAGACCGACTCTCGCCTGC 61.113 63.158 0.00 0.00 38.82 4.85
422 426 2.814913 TAGACCGACTCTCGCCTGCA 62.815 60.000 0.00 0.00 38.82 4.41
423 427 3.069980 GACCGACTCTCGCCTGCAT 62.070 63.158 0.00 0.00 38.82 3.96
424 428 2.279120 CCGACTCTCGCCTGCATC 60.279 66.667 0.00 0.00 38.82 3.91
425 429 2.780094 CCGACTCTCGCCTGCATCT 61.780 63.158 0.00 0.00 38.82 2.90
426 430 1.448119 CCGACTCTCGCCTGCATCTA 61.448 60.000 0.00 0.00 38.82 1.98
427 431 0.317436 CGACTCTCGCCTGCATCTAC 60.317 60.000 0.00 0.00 31.14 2.59
428 432 1.028905 GACTCTCGCCTGCATCTACT 58.971 55.000 0.00 0.00 0.00 2.57
429 433 2.222886 GACTCTCGCCTGCATCTACTA 58.777 52.381 0.00 0.00 0.00 1.82
430 434 1.950909 ACTCTCGCCTGCATCTACTAC 59.049 52.381 0.00 0.00 0.00 2.73
431 435 2.226330 CTCTCGCCTGCATCTACTACT 58.774 52.381 0.00 0.00 0.00 2.57
432 436 3.181453 ACTCTCGCCTGCATCTACTACTA 60.181 47.826 0.00 0.00 0.00 1.82
433 437 4.006989 CTCTCGCCTGCATCTACTACTAT 58.993 47.826 0.00 0.00 0.00 2.12
434 438 4.399219 TCTCGCCTGCATCTACTACTATT 58.601 43.478 0.00 0.00 0.00 1.73
435 439 5.557866 TCTCGCCTGCATCTACTACTATTA 58.442 41.667 0.00 0.00 0.00 0.98
436 440 5.411977 TCTCGCCTGCATCTACTACTATTAC 59.588 44.000 0.00 0.00 0.00 1.89
437 441 5.314529 TCGCCTGCATCTACTACTATTACT 58.685 41.667 0.00 0.00 0.00 2.24
438 442 5.411977 TCGCCTGCATCTACTACTATTACTC 59.588 44.000 0.00 0.00 0.00 2.59
439 443 5.392165 CGCCTGCATCTACTACTATTACTCC 60.392 48.000 0.00 0.00 0.00 3.85
440 444 5.477291 GCCTGCATCTACTACTATTACTCCA 59.523 44.000 0.00 0.00 0.00 3.86
441 445 6.570764 GCCTGCATCTACTACTATTACTCCAC 60.571 46.154 0.00 0.00 0.00 4.02
442 446 6.490381 CCTGCATCTACTACTATTACTCCACA 59.510 42.308 0.00 0.00 0.00 4.17
443 447 7.273320 TGCATCTACTACTATTACTCCACAC 57.727 40.000 0.00 0.00 0.00 3.82
444 448 6.831868 TGCATCTACTACTATTACTCCACACA 59.168 38.462 0.00 0.00 0.00 3.72
445 449 7.505923 TGCATCTACTACTATTACTCCACACAT 59.494 37.037 0.00 0.00 0.00 3.21
446 450 8.024285 GCATCTACTACTATTACTCCACACATC 58.976 40.741 0.00 0.00 0.00 3.06
447 451 7.725818 TCTACTACTATTACTCCACACATCG 57.274 40.000 0.00 0.00 0.00 3.84
448 452 7.503549 TCTACTACTATTACTCCACACATCGA 58.496 38.462 0.00 0.00 0.00 3.59
449 453 6.374565 ACTACTATTACTCCACACATCGAC 57.625 41.667 0.00 0.00 0.00 4.20
450 454 4.650754 ACTATTACTCCACACATCGACC 57.349 45.455 0.00 0.00 0.00 4.79
451 455 2.579207 ATTACTCCACACATCGACCG 57.421 50.000 0.00 0.00 0.00 4.79
452 456 0.108992 TTACTCCACACATCGACCGC 60.109 55.000 0.00 0.00 0.00 5.68
453 457 0.963856 TACTCCACACATCGACCGCT 60.964 55.000 0.00 0.00 0.00 5.52
454 458 0.963856 ACTCCACACATCGACCGCTA 60.964 55.000 0.00 0.00 0.00 4.26
455 459 0.385751 CTCCACACATCGACCGCTAT 59.614 55.000 0.00 0.00 0.00 2.97
456 460 0.384309 TCCACACATCGACCGCTATC 59.616 55.000 0.00 0.00 0.00 2.08
457 461 0.597637 CCACACATCGACCGCTATCC 60.598 60.000 0.00 0.00 0.00 2.59
458 462 0.102300 CACACATCGACCGCTATCCA 59.898 55.000 0.00 0.00 0.00 3.41
459 463 0.385751 ACACATCGACCGCTATCCAG 59.614 55.000 0.00 0.00 0.00 3.86
460 464 0.941463 CACATCGACCGCTATCCAGC 60.941 60.000 0.00 0.00 44.90 4.85
476 480 7.918536 CTATCCAGCATGCATCTATTAAGTT 57.081 36.000 21.98 0.00 31.97 2.66
477 481 6.814506 ATCCAGCATGCATCTATTAAGTTC 57.185 37.500 21.98 0.00 31.97 3.01
478 482 5.683681 TCCAGCATGCATCTATTAAGTTCA 58.316 37.500 21.98 0.00 31.97 3.18
479 483 6.301486 TCCAGCATGCATCTATTAAGTTCAT 58.699 36.000 21.98 0.00 31.97 2.57
480 484 6.206048 TCCAGCATGCATCTATTAAGTTCATG 59.794 38.462 21.98 2.89 34.59 3.07
481 485 6.206048 CCAGCATGCATCTATTAAGTTCATGA 59.794 38.462 21.98 0.00 33.64 3.07
482 486 7.298854 CAGCATGCATCTATTAAGTTCATGAG 58.701 38.462 21.98 0.00 33.64 2.90
483 487 7.172703 CAGCATGCATCTATTAAGTTCATGAGA 59.827 37.037 21.98 0.00 33.64 3.27
484 488 7.718314 AGCATGCATCTATTAAGTTCATGAGAA 59.282 33.333 21.98 0.00 33.64 2.87
485 489 8.347771 GCATGCATCTATTAAGTTCATGAGAAA 58.652 33.333 14.21 0.00 35.08 2.52
488 492 8.390354 TGCATCTATTAAGTTCATGAGAAAACG 58.610 33.333 0.00 0.00 35.08 3.60
489 493 7.852945 GCATCTATTAAGTTCATGAGAAAACGG 59.147 37.037 0.00 0.00 35.08 4.44
490 494 9.098355 CATCTATTAAGTTCATGAGAAAACGGA 57.902 33.333 0.00 0.00 35.08 4.69
491 495 8.703604 TCTATTAAGTTCATGAGAAAACGGAG 57.296 34.615 0.00 0.00 35.08 4.63
493 497 9.582431 CTATTAAGTTCATGAGAAAACGGAGTA 57.418 33.333 0.00 0.00 45.00 2.59
494 498 8.842358 ATTAAGTTCATGAGAAAACGGAGTAA 57.158 30.769 0.00 0.00 45.00 2.24
495 499 8.842358 TTAAGTTCATGAGAAAACGGAGTAAT 57.158 30.769 0.00 0.00 45.00 1.89
496 500 6.727824 AGTTCATGAGAAAACGGAGTAATG 57.272 37.500 0.00 0.00 45.00 1.90
497 501 5.122396 AGTTCATGAGAAAACGGAGTAATGC 59.878 40.000 0.00 0.00 45.00 3.56
498 502 4.574892 TCATGAGAAAACGGAGTAATGCA 58.425 39.130 0.00 0.00 45.00 3.96
499 503 5.000591 TCATGAGAAAACGGAGTAATGCAA 58.999 37.500 0.00 0.00 45.00 4.08
500 504 5.647658 TCATGAGAAAACGGAGTAATGCAAT 59.352 36.000 0.00 0.00 45.00 3.56
501 505 6.821160 TCATGAGAAAACGGAGTAATGCAATA 59.179 34.615 0.00 0.00 45.00 1.90
502 506 7.335673 TCATGAGAAAACGGAGTAATGCAATAA 59.664 33.333 0.00 0.00 45.00 1.40
503 507 7.072177 TGAGAAAACGGAGTAATGCAATAAG 57.928 36.000 0.00 0.00 45.00 1.73
504 508 6.876789 TGAGAAAACGGAGTAATGCAATAAGA 59.123 34.615 0.00 0.00 45.00 2.10
505 509 7.389330 TGAGAAAACGGAGTAATGCAATAAGAA 59.611 33.333 0.00 0.00 45.00 2.52
506 510 7.527457 AGAAAACGGAGTAATGCAATAAGAAC 58.473 34.615 0.00 0.00 45.00 3.01
507 511 5.464965 AACGGAGTAATGCAATAAGAACG 57.535 39.130 0.00 0.00 45.00 3.95
508 512 4.751060 ACGGAGTAATGCAATAAGAACGA 58.249 39.130 0.00 0.00 41.94 3.85
509 513 5.357257 ACGGAGTAATGCAATAAGAACGAT 58.643 37.500 0.00 0.00 41.94 3.73
510 514 5.234329 ACGGAGTAATGCAATAAGAACGATG 59.766 40.000 0.00 0.00 41.94 3.84
511 515 5.462068 CGGAGTAATGCAATAAGAACGATGA 59.538 40.000 0.00 0.00 0.00 2.92
512 516 6.562270 CGGAGTAATGCAATAAGAACGATGAC 60.562 42.308 0.00 0.00 0.00 3.06
513 517 6.257849 GGAGTAATGCAATAAGAACGATGACA 59.742 38.462 0.00 0.00 0.00 3.58
514 518 7.041780 GGAGTAATGCAATAAGAACGATGACAT 60.042 37.037 0.00 0.00 0.00 3.06
515 519 7.633621 AGTAATGCAATAAGAACGATGACATG 58.366 34.615 0.00 0.00 0.00 3.21
516 520 6.682423 AATGCAATAAGAACGATGACATGA 57.318 33.333 0.00 0.00 0.00 3.07
517 521 6.872628 ATGCAATAAGAACGATGACATGAT 57.127 33.333 0.00 0.00 0.00 2.45
518 522 6.051646 TGCAATAAGAACGATGACATGATG 57.948 37.500 0.00 0.00 0.00 3.07
519 523 5.585844 TGCAATAAGAACGATGACATGATGT 59.414 36.000 0.00 0.00 0.00 3.06
520 524 6.760770 TGCAATAAGAACGATGACATGATGTA 59.239 34.615 0.00 0.00 0.00 2.29
521 525 7.042523 TGCAATAAGAACGATGACATGATGTAG 60.043 37.037 0.00 0.00 0.00 2.74
522 526 7.169813 GCAATAAGAACGATGACATGATGTAGA 59.830 37.037 0.00 0.00 0.00 2.59
523 527 8.483218 CAATAAGAACGATGACATGATGTAGAC 58.517 37.037 0.00 0.00 0.00 2.59
524 528 4.602006 AGAACGATGACATGATGTAGACG 58.398 43.478 0.00 7.10 0.00 4.18
525 529 4.335594 AGAACGATGACATGATGTAGACGA 59.664 41.667 18.78 0.00 0.00 4.20
526 530 4.216366 ACGATGACATGATGTAGACGAG 57.784 45.455 18.78 4.84 0.00 4.18
527 531 3.877508 ACGATGACATGATGTAGACGAGA 59.122 43.478 18.78 0.00 0.00 4.04
528 532 4.517075 ACGATGACATGATGTAGACGAGAT 59.483 41.667 18.78 1.24 0.00 2.75
529 533 5.085390 CGATGACATGATGTAGACGAGATC 58.915 45.833 0.00 0.00 0.00 2.75
530 534 5.106752 CGATGACATGATGTAGACGAGATCT 60.107 44.000 0.00 0.00 41.95 2.75
531 535 5.429957 TGACATGATGTAGACGAGATCTG 57.570 43.478 0.00 0.00 38.49 2.90
532 536 4.884164 TGACATGATGTAGACGAGATCTGT 59.116 41.667 0.00 0.00 38.49 3.41
533 537 5.358160 TGACATGATGTAGACGAGATCTGTT 59.642 40.000 0.00 0.00 38.49 3.16
534 538 6.127619 TGACATGATGTAGACGAGATCTGTTT 60.128 38.462 0.00 0.00 38.49 2.83
535 539 7.067008 TGACATGATGTAGACGAGATCTGTTTA 59.933 37.037 0.00 0.00 38.49 2.01
536 540 7.946207 ACATGATGTAGACGAGATCTGTTTAT 58.054 34.615 0.00 0.00 38.49 1.40
537 541 8.079203 ACATGATGTAGACGAGATCTGTTTATC 58.921 37.037 0.00 3.44 38.49 1.75
538 542 7.809546 TGATGTAGACGAGATCTGTTTATCT 57.190 36.000 0.00 0.00 38.49 1.98
539 543 8.904099 TGATGTAGACGAGATCTGTTTATCTA 57.096 34.615 0.00 0.00 38.49 1.98
540 544 9.508642 TGATGTAGACGAGATCTGTTTATCTAT 57.491 33.333 0.00 0.00 38.49 1.98
543 547 8.076781 TGTAGACGAGATCTGTTTATCTATTGC 58.923 37.037 0.00 0.00 38.49 3.56
544 548 6.146216 AGACGAGATCTGTTTATCTATTGCG 58.854 40.000 0.00 0.00 36.33 4.85
545 549 6.017026 AGACGAGATCTGTTTATCTATTGCGA 60.017 38.462 0.00 0.00 36.33 5.10
546 550 5.915758 ACGAGATCTGTTTATCTATTGCGAC 59.084 40.000 0.00 0.00 36.33 5.19
547 551 5.915196 CGAGATCTGTTTATCTATTGCGACA 59.085 40.000 0.00 0.00 36.33 4.35
548 552 6.584184 CGAGATCTGTTTATCTATTGCGACAT 59.416 38.462 0.00 0.00 36.33 3.06
549 553 7.750903 CGAGATCTGTTTATCTATTGCGACATA 59.249 37.037 0.00 0.00 36.33 2.29
550 554 9.579768 GAGATCTGTTTATCTATTGCGACATAT 57.420 33.333 0.00 0.00 36.33 1.78
565 569 9.747293 ATTGCGACATATATAGATCTCATCTTG 57.253 33.333 0.00 0.00 40.76 3.02
566 570 8.286191 TGCGACATATATAGATCTCATCTTGT 57.714 34.615 0.00 0.00 40.76 3.16
567 571 8.743714 TGCGACATATATAGATCTCATCTTGTT 58.256 33.333 0.00 0.00 40.76 2.83
579 583 8.802267 AGATCTCATCTTGTTATCCTTAGTAGC 58.198 37.037 0.00 0.00 35.76 3.58
580 584 7.898014 TCTCATCTTGTTATCCTTAGTAGCA 57.102 36.000 0.00 0.00 0.00 3.49
581 585 8.306313 TCTCATCTTGTTATCCTTAGTAGCAA 57.694 34.615 0.00 0.00 0.00 3.91
582 586 8.198109 TCTCATCTTGTTATCCTTAGTAGCAAC 58.802 37.037 0.00 0.00 0.00 4.17
583 587 6.978659 TCATCTTGTTATCCTTAGTAGCAACG 59.021 38.462 0.00 0.00 0.00 4.10
584 588 5.657474 TCTTGTTATCCTTAGTAGCAACGG 58.343 41.667 0.00 0.00 0.00 4.44
585 589 5.186409 TCTTGTTATCCTTAGTAGCAACGGT 59.814 40.000 0.00 0.00 0.00 4.83
586 590 6.377996 TCTTGTTATCCTTAGTAGCAACGGTA 59.622 38.462 0.00 0.00 0.00 4.02
587 591 5.894807 TGTTATCCTTAGTAGCAACGGTAC 58.105 41.667 0.00 0.00 36.86 3.34
588 592 5.418524 TGTTATCCTTAGTAGCAACGGTACA 59.581 40.000 6.17 0.00 38.76 2.90
589 593 6.097270 TGTTATCCTTAGTAGCAACGGTACAT 59.903 38.462 6.17 0.00 38.76 2.29
590 594 7.285172 TGTTATCCTTAGTAGCAACGGTACATA 59.715 37.037 6.17 0.00 38.76 2.29
591 595 6.912951 ATCCTTAGTAGCAACGGTACATAT 57.087 37.500 6.17 0.00 38.76 1.78
592 596 6.080648 TCCTTAGTAGCAACGGTACATATG 57.919 41.667 0.00 0.00 38.76 1.78
593 597 5.595542 TCCTTAGTAGCAACGGTACATATGT 59.404 40.000 13.93 13.93 38.76 2.29
594 598 5.690409 CCTTAGTAGCAACGGTACATATGTG 59.310 44.000 18.81 4.37 38.76 3.21
595 599 4.730949 AGTAGCAACGGTACATATGTGT 57.269 40.909 18.81 5.05 38.76 3.72
596 600 4.679662 AGTAGCAACGGTACATATGTGTC 58.320 43.478 18.81 10.86 38.76 3.67
597 601 3.603158 AGCAACGGTACATATGTGTCA 57.397 42.857 18.81 0.00 39.77 3.58
598 602 3.521560 AGCAACGGTACATATGTGTCAG 58.478 45.455 18.81 13.41 39.77 3.51
599 603 3.056107 AGCAACGGTACATATGTGTCAGT 60.056 43.478 18.81 13.99 39.77 3.41
600 604 3.682858 GCAACGGTACATATGTGTCAGTT 59.317 43.478 18.81 18.23 39.77 3.16
601 605 4.201685 GCAACGGTACATATGTGTCAGTTC 60.202 45.833 18.81 12.55 39.77 3.01
602 606 4.119442 ACGGTACATATGTGTCAGTTCC 57.881 45.455 18.81 7.99 39.77 3.62
603 607 3.118884 ACGGTACATATGTGTCAGTTCCC 60.119 47.826 18.81 4.56 39.77 3.97
604 608 3.740141 CGGTACATATGTGTCAGTTCCCC 60.740 52.174 18.81 3.63 39.77 4.81
605 609 3.454812 GGTACATATGTGTCAGTTCCCCT 59.545 47.826 18.81 0.00 39.77 4.79
606 610 4.080526 GGTACATATGTGTCAGTTCCCCTT 60.081 45.833 18.81 0.00 39.77 3.95
607 611 4.222124 ACATATGTGTCAGTTCCCCTTC 57.778 45.455 7.78 0.00 31.41 3.46
608 612 3.846588 ACATATGTGTCAGTTCCCCTTCT 59.153 43.478 7.78 0.00 31.41 2.85
609 613 2.867109 ATGTGTCAGTTCCCCTTCTG 57.133 50.000 0.00 0.00 0.00 3.02
610 614 1.507140 TGTGTCAGTTCCCCTTCTGT 58.493 50.000 0.00 0.00 33.89 3.41
611 615 1.416401 TGTGTCAGTTCCCCTTCTGTC 59.584 52.381 0.00 0.00 33.89 3.51
612 616 0.679505 TGTCAGTTCCCCTTCTGTCG 59.320 55.000 0.00 0.00 33.89 4.35
613 617 0.670854 GTCAGTTCCCCTTCTGTCGC 60.671 60.000 0.00 0.00 33.89 5.19
614 618 0.832135 TCAGTTCCCCTTCTGTCGCT 60.832 55.000 0.00 0.00 33.89 4.93
615 619 0.671781 CAGTTCCCCTTCTGTCGCTG 60.672 60.000 0.00 0.00 0.00 5.18
616 620 1.376037 GTTCCCCTTCTGTCGCTGG 60.376 63.158 0.00 0.00 0.00 4.85
617 621 2.592993 TTCCCCTTCTGTCGCTGGG 61.593 63.158 0.00 0.00 39.37 4.45
618 622 3.003173 CCCCTTCTGTCGCTGGGA 61.003 66.667 0.00 0.00 42.11 4.37
619 623 2.370445 CCCCTTCTGTCGCTGGGAT 61.370 63.158 0.00 0.00 42.11 3.85
620 624 1.144936 CCCTTCTGTCGCTGGGATC 59.855 63.158 0.00 0.00 42.11 3.36
621 625 1.617018 CCCTTCTGTCGCTGGGATCA 61.617 60.000 0.00 0.00 42.11 2.92
622 626 0.250234 CCTTCTGTCGCTGGGATCAA 59.750 55.000 0.00 0.00 0.00 2.57
623 627 1.649664 CTTCTGTCGCTGGGATCAAG 58.350 55.000 0.00 0.00 0.00 3.02
624 628 0.391661 TTCTGTCGCTGGGATCAAGC 60.392 55.000 9.09 9.09 0.00 4.01
625 629 1.078918 CTGTCGCTGGGATCAAGCA 60.079 57.895 17.02 4.70 0.00 3.91
626 630 1.364626 CTGTCGCTGGGATCAAGCAC 61.365 60.000 17.02 14.02 0.00 4.40
627 631 2.109126 GTCGCTGGGATCAAGCACC 61.109 63.158 17.02 5.47 0.00 5.01
628 632 3.197790 CGCTGGGATCAAGCACCG 61.198 66.667 17.02 0.96 0.00 4.94
937 950 1.197430 CCCCACTCTGCTCTGTCCTT 61.197 60.000 0.00 0.00 0.00 3.36
1136 1149 5.449999 GGGTTCAAGTGTTCTTCGTTTTGAT 60.450 40.000 0.00 0.00 0.00 2.57
1398 1411 6.687081 TTGTGTTTTTGGTAGTTAGTCTGG 57.313 37.500 0.00 0.00 0.00 3.86
1448 1475 2.762887 TCAACAACAGCATGGTTTGGAA 59.237 40.909 17.82 6.14 43.62 3.53
1718 1745 3.030291 TGAAGCATTGACCCTGTTGTTT 58.970 40.909 0.00 0.00 0.00 2.83
2102 2192 2.181954 AGAGTTCAAGCAGAAGCAGG 57.818 50.000 0.00 0.00 45.49 4.85
2940 3956 4.261197 GGCAGGTAGTTCAAAAGACAACAG 60.261 45.833 0.00 0.00 0.00 3.16
3146 4162 1.007238 TGGGAAGGAGTAGTAGCAGCT 59.993 52.381 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.758123 AACCCCTTTAACACGTCGGA 59.242 50.000 0.00 0.00 0.00 4.55
123 125 7.281098 TCCGCGATCTATTTATCCTATCTACT 58.719 38.462 8.23 0.00 0.00 2.57
234 237 6.150140 CCCCGGATCTCTTTTCATCATATTTC 59.850 42.308 0.73 0.00 0.00 2.17
253 256 1.208844 TGAAACCTATTGCCCCCGGA 61.209 55.000 0.73 0.00 0.00 5.14
262 266 5.485708 AGAGAAGCCACTAGTGAAACCTATT 59.514 40.000 24.68 7.50 37.80 1.73
341 345 8.946085 GCCTGGATATCGTCATAATTATTTGAA 58.054 33.333 0.00 0.00 0.00 2.69
342 346 8.100164 TGCCTGGATATCGTCATAATTATTTGA 58.900 33.333 0.00 0.00 0.00 2.69
343 347 8.267620 TGCCTGGATATCGTCATAATTATTTG 57.732 34.615 0.00 0.00 0.00 2.32
344 348 8.862325 TTGCCTGGATATCGTCATAATTATTT 57.138 30.769 0.00 0.00 0.00 1.40
345 349 8.896744 CATTGCCTGGATATCGTCATAATTATT 58.103 33.333 0.00 0.00 0.00 1.40
346 350 8.267183 TCATTGCCTGGATATCGTCATAATTAT 58.733 33.333 0.00 0.00 0.00 1.28
347 351 7.619965 TCATTGCCTGGATATCGTCATAATTA 58.380 34.615 0.00 0.00 0.00 1.40
348 352 6.475504 TCATTGCCTGGATATCGTCATAATT 58.524 36.000 0.00 0.00 0.00 1.40
349 353 6.053632 TCATTGCCTGGATATCGTCATAAT 57.946 37.500 0.00 0.00 0.00 1.28
350 354 5.482163 TCATTGCCTGGATATCGTCATAA 57.518 39.130 0.00 0.00 0.00 1.90
351 355 5.187576 TGATCATTGCCTGGATATCGTCATA 59.812 40.000 0.00 0.00 0.00 2.15
352 356 4.019950 TGATCATTGCCTGGATATCGTCAT 60.020 41.667 0.00 0.00 0.00 3.06
353 357 3.324556 TGATCATTGCCTGGATATCGTCA 59.675 43.478 0.00 0.00 0.00 4.35
354 358 3.930336 TGATCATTGCCTGGATATCGTC 58.070 45.455 0.00 0.00 0.00 4.20
355 359 4.564782 ATGATCATTGCCTGGATATCGT 57.435 40.909 1.18 0.00 0.00 3.73
356 360 8.843885 ATATAATGATCATTGCCTGGATATCG 57.156 34.615 27.59 0.00 32.50 2.92
359 363 8.159447 GCCTATATAATGATCATTGCCTGGATA 58.841 37.037 27.59 17.08 32.50 2.59
360 364 7.002879 GCCTATATAATGATCATTGCCTGGAT 58.997 38.462 27.59 15.63 32.50 3.41
361 365 6.069498 TGCCTATATAATGATCATTGCCTGGA 60.069 38.462 27.59 9.70 32.50 3.86
362 366 6.124340 TGCCTATATAATGATCATTGCCTGG 58.876 40.000 27.59 21.54 32.50 4.45
363 367 7.501225 TGATGCCTATATAATGATCATTGCCTG 59.499 37.037 27.59 14.52 32.50 4.85
364 368 7.501559 GTGATGCCTATATAATGATCATTGCCT 59.498 37.037 27.59 15.24 32.50 4.75
365 369 7.283807 TGTGATGCCTATATAATGATCATTGCC 59.716 37.037 27.59 11.67 32.50 4.52
366 370 8.217131 TGTGATGCCTATATAATGATCATTGC 57.783 34.615 27.59 21.06 32.50 3.56
368 372 9.570468 GGATGTGATGCCTATATAATGATCATT 57.430 33.333 23.75 23.75 34.93 2.57
369 373 8.720537 TGGATGTGATGCCTATATAATGATCAT 58.279 33.333 1.18 1.18 0.00 2.45
370 374 8.093118 TGGATGTGATGCCTATATAATGATCA 57.907 34.615 0.00 0.00 0.00 2.92
371 375 8.969260 TTGGATGTGATGCCTATATAATGATC 57.031 34.615 0.00 0.00 0.00 2.92
372 376 8.775151 TCTTGGATGTGATGCCTATATAATGAT 58.225 33.333 0.00 0.00 0.00 2.45
373 377 8.149631 TCTTGGATGTGATGCCTATATAATGA 57.850 34.615 0.00 0.00 0.00 2.57
374 378 8.975663 ATCTTGGATGTGATGCCTATATAATG 57.024 34.615 0.00 0.00 0.00 1.90
377 381 9.271921 ACTAATCTTGGATGTGATGCCTATATA 57.728 33.333 0.00 0.00 0.00 0.86
378 382 8.155620 ACTAATCTTGGATGTGATGCCTATAT 57.844 34.615 0.00 0.00 0.00 0.86
379 383 7.559335 ACTAATCTTGGATGTGATGCCTATA 57.441 36.000 0.00 0.00 0.00 1.31
380 384 6.445451 ACTAATCTTGGATGTGATGCCTAT 57.555 37.500 0.00 0.00 0.00 2.57
381 385 5.894298 ACTAATCTTGGATGTGATGCCTA 57.106 39.130 0.00 0.00 0.00 3.93
382 386 4.785346 ACTAATCTTGGATGTGATGCCT 57.215 40.909 0.00 0.00 0.00 4.75
383 387 5.698545 GTCTACTAATCTTGGATGTGATGCC 59.301 44.000 0.00 0.00 0.00 4.40
384 388 5.698545 GGTCTACTAATCTTGGATGTGATGC 59.301 44.000 0.00 0.00 0.00 3.91
385 389 5.923114 CGGTCTACTAATCTTGGATGTGATG 59.077 44.000 0.00 0.00 0.00 3.07
386 390 5.833667 TCGGTCTACTAATCTTGGATGTGAT 59.166 40.000 0.00 0.00 0.00 3.06
387 391 5.067413 GTCGGTCTACTAATCTTGGATGTGA 59.933 44.000 0.00 0.00 0.00 3.58
388 392 5.067936 AGTCGGTCTACTAATCTTGGATGTG 59.932 44.000 0.00 0.00 0.00 3.21
389 393 5.202004 AGTCGGTCTACTAATCTTGGATGT 58.798 41.667 0.00 0.00 0.00 3.06
390 394 5.533154 AGAGTCGGTCTACTAATCTTGGATG 59.467 44.000 0.00 0.00 31.71 3.51
391 395 5.697067 AGAGTCGGTCTACTAATCTTGGAT 58.303 41.667 0.00 0.00 31.71 3.41
392 396 5.113446 AGAGTCGGTCTACTAATCTTGGA 57.887 43.478 0.00 0.00 31.71 3.53
393 397 4.024725 CGAGAGTCGGTCTACTAATCTTGG 60.025 50.000 0.00 0.00 34.71 3.61
394 398 4.553156 GCGAGAGTCGGTCTACTAATCTTG 60.553 50.000 0.00 0.00 40.84 3.02
395 399 3.560896 GCGAGAGTCGGTCTACTAATCTT 59.439 47.826 0.00 0.00 40.84 2.40
396 400 3.132925 GCGAGAGTCGGTCTACTAATCT 58.867 50.000 0.00 0.00 40.84 2.40
397 401 2.223845 GGCGAGAGTCGGTCTACTAATC 59.776 54.545 0.00 0.00 40.84 1.75
398 402 2.158784 AGGCGAGAGTCGGTCTACTAAT 60.159 50.000 0.00 0.00 43.49 1.73
399 403 1.209019 AGGCGAGAGTCGGTCTACTAA 59.791 52.381 0.00 0.00 43.49 2.24
400 404 0.829333 AGGCGAGAGTCGGTCTACTA 59.171 55.000 0.00 0.00 43.49 1.82
401 405 0.745128 CAGGCGAGAGTCGGTCTACT 60.745 60.000 0.00 0.00 43.49 2.57
402 406 1.722677 CAGGCGAGAGTCGGTCTAC 59.277 63.158 0.00 0.00 43.49 2.59
403 407 2.113433 GCAGGCGAGAGTCGGTCTA 61.113 63.158 0.00 0.00 43.49 2.59
404 408 3.444805 GCAGGCGAGAGTCGGTCT 61.445 66.667 0.00 0.00 43.49 3.85
405 409 2.945398 GATGCAGGCGAGAGTCGGTC 62.945 65.000 0.00 0.00 43.49 4.79
406 410 3.069980 GATGCAGGCGAGAGTCGGT 62.070 63.158 0.00 0.00 43.49 4.69
407 411 1.448119 TAGATGCAGGCGAGAGTCGG 61.448 60.000 0.00 0.00 43.49 4.79
408 412 0.317436 GTAGATGCAGGCGAGAGTCG 60.317 60.000 0.00 0.00 43.49 4.18
409 413 1.028905 AGTAGATGCAGGCGAGAGTC 58.971 55.000 0.00 0.00 0.00 3.36
410 414 1.950909 GTAGTAGATGCAGGCGAGAGT 59.049 52.381 0.00 0.00 0.00 3.24
411 415 2.226330 AGTAGTAGATGCAGGCGAGAG 58.774 52.381 0.00 0.00 0.00 3.20
412 416 2.350057 AGTAGTAGATGCAGGCGAGA 57.650 50.000 0.00 0.00 0.00 4.04
413 417 4.775058 AATAGTAGTAGATGCAGGCGAG 57.225 45.455 0.00 0.00 0.00 5.03
414 418 5.314529 AGTAATAGTAGTAGATGCAGGCGA 58.685 41.667 0.00 0.00 0.00 5.54
415 419 5.392165 GGAGTAATAGTAGTAGATGCAGGCG 60.392 48.000 0.00 0.00 0.00 5.52
416 420 5.477291 TGGAGTAATAGTAGTAGATGCAGGC 59.523 44.000 0.00 0.00 0.00 4.85
417 421 6.490381 TGTGGAGTAATAGTAGTAGATGCAGG 59.510 42.308 0.00 0.00 0.00 4.85
418 422 7.013369 TGTGTGGAGTAATAGTAGTAGATGCAG 59.987 40.741 0.00 0.00 0.00 4.41
419 423 6.831868 TGTGTGGAGTAATAGTAGTAGATGCA 59.168 38.462 0.00 0.00 0.00 3.96
420 424 7.273320 TGTGTGGAGTAATAGTAGTAGATGC 57.727 40.000 0.00 0.00 0.00 3.91
421 425 8.231161 CGATGTGTGGAGTAATAGTAGTAGATG 58.769 40.741 0.00 0.00 0.00 2.90
422 426 8.155510 TCGATGTGTGGAGTAATAGTAGTAGAT 58.844 37.037 0.00 0.00 0.00 1.98
423 427 7.440556 GTCGATGTGTGGAGTAATAGTAGTAGA 59.559 40.741 0.00 0.00 0.00 2.59
424 428 7.307870 GGTCGATGTGTGGAGTAATAGTAGTAG 60.308 44.444 0.00 0.00 0.00 2.57
425 429 6.484643 GGTCGATGTGTGGAGTAATAGTAGTA 59.515 42.308 0.00 0.00 0.00 1.82
426 430 5.298777 GGTCGATGTGTGGAGTAATAGTAGT 59.701 44.000 0.00 0.00 0.00 2.73
427 431 5.560375 CGGTCGATGTGTGGAGTAATAGTAG 60.560 48.000 0.00 0.00 0.00 2.57
428 432 4.274214 CGGTCGATGTGTGGAGTAATAGTA 59.726 45.833 0.00 0.00 0.00 1.82
429 433 3.066342 CGGTCGATGTGTGGAGTAATAGT 59.934 47.826 0.00 0.00 0.00 2.12
430 434 3.629058 CGGTCGATGTGTGGAGTAATAG 58.371 50.000 0.00 0.00 0.00 1.73
431 435 2.223641 GCGGTCGATGTGTGGAGTAATA 60.224 50.000 0.00 0.00 0.00 0.98
432 436 1.470979 GCGGTCGATGTGTGGAGTAAT 60.471 52.381 0.00 0.00 0.00 1.89
433 437 0.108992 GCGGTCGATGTGTGGAGTAA 60.109 55.000 0.00 0.00 0.00 2.24
434 438 0.963856 AGCGGTCGATGTGTGGAGTA 60.964 55.000 0.00 0.00 0.00 2.59
435 439 0.963856 TAGCGGTCGATGTGTGGAGT 60.964 55.000 0.00 0.00 0.00 3.85
436 440 0.385751 ATAGCGGTCGATGTGTGGAG 59.614 55.000 0.00 0.00 0.00 3.86
437 441 0.384309 GATAGCGGTCGATGTGTGGA 59.616 55.000 0.00 0.00 0.00 4.02
438 442 0.597637 GGATAGCGGTCGATGTGTGG 60.598 60.000 0.00 0.00 0.00 4.17
439 443 0.102300 TGGATAGCGGTCGATGTGTG 59.898 55.000 0.00 0.00 0.00 3.82
440 444 0.385751 CTGGATAGCGGTCGATGTGT 59.614 55.000 0.00 0.00 0.00 3.72
441 445 0.941463 GCTGGATAGCGGTCGATGTG 60.941 60.000 0.00 0.00 40.67 3.21
442 446 1.364171 GCTGGATAGCGGTCGATGT 59.636 57.895 0.00 0.00 40.67 3.06
443 447 4.251760 GCTGGATAGCGGTCGATG 57.748 61.111 0.00 0.00 40.67 3.84
452 456 7.605309 TGAACTTAATAGATGCATGCTGGATAG 59.395 37.037 20.33 8.37 0.00 2.08
453 457 7.452562 TGAACTTAATAGATGCATGCTGGATA 58.547 34.615 20.33 7.07 0.00 2.59
454 458 6.301486 TGAACTTAATAGATGCATGCTGGAT 58.699 36.000 20.33 3.62 0.00 3.41
455 459 5.683681 TGAACTTAATAGATGCATGCTGGA 58.316 37.500 20.33 0.00 0.00 3.86
456 460 6.206048 TCATGAACTTAATAGATGCATGCTGG 59.794 38.462 20.33 1.20 32.81 4.85
457 461 7.172703 TCTCATGAACTTAATAGATGCATGCTG 59.827 37.037 20.33 2.60 32.81 4.41
458 462 7.222161 TCTCATGAACTTAATAGATGCATGCT 58.778 34.615 20.33 4.11 32.81 3.79
459 463 7.430992 TCTCATGAACTTAATAGATGCATGC 57.569 36.000 11.82 11.82 32.81 4.06
462 466 8.390354 CGTTTTCTCATGAACTTAATAGATGCA 58.610 33.333 0.00 0.00 31.02 3.96
463 467 7.852945 CCGTTTTCTCATGAACTTAATAGATGC 59.147 37.037 0.00 0.00 31.02 3.91
464 468 9.098355 TCCGTTTTCTCATGAACTTAATAGATG 57.902 33.333 0.00 0.00 31.02 2.90
465 469 9.319143 CTCCGTTTTCTCATGAACTTAATAGAT 57.681 33.333 0.00 0.00 31.02 1.98
466 470 8.311836 ACTCCGTTTTCTCATGAACTTAATAGA 58.688 33.333 0.00 0.00 31.02 1.98
467 471 8.480643 ACTCCGTTTTCTCATGAACTTAATAG 57.519 34.615 0.00 0.00 31.02 1.73
468 472 9.932207 TTACTCCGTTTTCTCATGAACTTAATA 57.068 29.630 0.00 0.00 31.02 0.98
469 473 8.842358 TTACTCCGTTTTCTCATGAACTTAAT 57.158 30.769 0.00 0.00 31.02 1.40
470 474 8.717821 CATTACTCCGTTTTCTCATGAACTTAA 58.282 33.333 0.00 0.00 31.02 1.85
471 475 7.148474 GCATTACTCCGTTTTCTCATGAACTTA 60.148 37.037 0.00 0.00 31.02 2.24
472 476 6.348540 GCATTACTCCGTTTTCTCATGAACTT 60.349 38.462 0.00 0.00 31.02 2.66
473 477 5.122396 GCATTACTCCGTTTTCTCATGAACT 59.878 40.000 0.00 0.00 31.02 3.01
474 478 5.106712 TGCATTACTCCGTTTTCTCATGAAC 60.107 40.000 0.00 0.00 31.02 3.18
475 479 5.000591 TGCATTACTCCGTTTTCTCATGAA 58.999 37.500 0.00 0.00 0.00 2.57
476 480 4.574892 TGCATTACTCCGTTTTCTCATGA 58.425 39.130 0.00 0.00 0.00 3.07
477 481 4.944962 TGCATTACTCCGTTTTCTCATG 57.055 40.909 0.00 0.00 0.00 3.07
478 482 7.552687 TCTTATTGCATTACTCCGTTTTCTCAT 59.447 33.333 0.00 0.00 0.00 2.90
479 483 6.876789 TCTTATTGCATTACTCCGTTTTCTCA 59.123 34.615 0.00 0.00 0.00 3.27
480 484 7.303634 TCTTATTGCATTACTCCGTTTTCTC 57.696 36.000 0.00 0.00 0.00 2.87
481 485 7.527457 GTTCTTATTGCATTACTCCGTTTTCT 58.473 34.615 0.00 0.00 0.00 2.52
482 486 6.464834 CGTTCTTATTGCATTACTCCGTTTTC 59.535 38.462 0.00 0.00 0.00 2.29
483 487 6.148150 TCGTTCTTATTGCATTACTCCGTTTT 59.852 34.615 0.00 0.00 0.00 2.43
484 488 5.640357 TCGTTCTTATTGCATTACTCCGTTT 59.360 36.000 0.00 0.00 0.00 3.60
485 489 5.172934 TCGTTCTTATTGCATTACTCCGTT 58.827 37.500 0.00 0.00 0.00 4.44
486 490 4.751060 TCGTTCTTATTGCATTACTCCGT 58.249 39.130 0.00 0.00 0.00 4.69
487 491 5.462068 TCATCGTTCTTATTGCATTACTCCG 59.538 40.000 0.00 0.00 0.00 4.63
488 492 6.257849 TGTCATCGTTCTTATTGCATTACTCC 59.742 38.462 0.00 0.00 0.00 3.85
489 493 7.234187 TGTCATCGTTCTTATTGCATTACTC 57.766 36.000 0.00 0.00 0.00 2.59
490 494 7.495606 TCATGTCATCGTTCTTATTGCATTACT 59.504 33.333 0.00 0.00 0.00 2.24
491 495 7.630026 TCATGTCATCGTTCTTATTGCATTAC 58.370 34.615 0.00 0.00 0.00 1.89
492 496 7.784633 TCATGTCATCGTTCTTATTGCATTA 57.215 32.000 0.00 0.00 0.00 1.90
493 497 6.682423 TCATGTCATCGTTCTTATTGCATT 57.318 33.333 0.00 0.00 0.00 3.56
494 498 6.261603 ACATCATGTCATCGTTCTTATTGCAT 59.738 34.615 0.00 0.00 0.00 3.96
495 499 5.585844 ACATCATGTCATCGTTCTTATTGCA 59.414 36.000 0.00 0.00 0.00 4.08
496 500 6.052840 ACATCATGTCATCGTTCTTATTGC 57.947 37.500 0.00 0.00 0.00 3.56
497 501 8.483218 GTCTACATCATGTCATCGTTCTTATTG 58.517 37.037 0.00 0.00 0.00 1.90
498 502 7.379797 CGTCTACATCATGTCATCGTTCTTATT 59.620 37.037 0.00 0.00 0.00 1.40
499 503 6.858478 CGTCTACATCATGTCATCGTTCTTAT 59.142 38.462 0.00 0.00 0.00 1.73
500 504 6.037830 TCGTCTACATCATGTCATCGTTCTTA 59.962 38.462 0.00 0.00 0.00 2.10
501 505 5.037385 CGTCTACATCATGTCATCGTTCTT 58.963 41.667 0.00 0.00 0.00 2.52
502 506 4.335594 TCGTCTACATCATGTCATCGTTCT 59.664 41.667 0.00 0.00 0.00 3.01
503 507 4.598062 TCGTCTACATCATGTCATCGTTC 58.402 43.478 0.00 0.00 0.00 3.95
504 508 4.335594 TCTCGTCTACATCATGTCATCGTT 59.664 41.667 0.00 0.00 0.00 3.85
505 509 3.877508 TCTCGTCTACATCATGTCATCGT 59.122 43.478 0.00 0.00 0.00 3.73
506 510 4.474226 TCTCGTCTACATCATGTCATCG 57.526 45.455 0.00 0.00 0.00 3.84
507 511 6.085573 CAGATCTCGTCTACATCATGTCATC 58.914 44.000 0.00 0.00 34.69 2.92
508 512 5.534278 ACAGATCTCGTCTACATCATGTCAT 59.466 40.000 0.00 0.00 34.69 3.06
509 513 4.884164 ACAGATCTCGTCTACATCATGTCA 59.116 41.667 0.00 0.00 34.69 3.58
510 514 5.431420 ACAGATCTCGTCTACATCATGTC 57.569 43.478 0.00 0.00 34.69 3.06
511 515 5.843673 AACAGATCTCGTCTACATCATGT 57.156 39.130 0.00 0.00 34.69 3.21
512 516 8.296000 AGATAAACAGATCTCGTCTACATCATG 58.704 37.037 0.00 0.00 34.69 3.07
513 517 8.402798 AGATAAACAGATCTCGTCTACATCAT 57.597 34.615 0.00 0.00 34.69 2.45
514 518 7.809546 AGATAAACAGATCTCGTCTACATCA 57.190 36.000 0.00 0.00 34.69 3.07
517 521 8.076781 GCAATAGATAAACAGATCTCGTCTACA 58.923 37.037 0.00 0.00 37.38 2.74
518 522 7.269511 CGCAATAGATAAACAGATCTCGTCTAC 59.730 40.741 0.00 0.00 37.38 2.59
519 523 7.172703 TCGCAATAGATAAACAGATCTCGTCTA 59.827 37.037 0.00 0.00 37.38 2.59
520 524 6.017026 TCGCAATAGATAAACAGATCTCGTCT 60.017 38.462 0.00 0.00 37.38 4.18
521 525 6.087028 GTCGCAATAGATAAACAGATCTCGTC 59.913 42.308 0.00 0.00 37.38 4.20
522 526 5.915758 GTCGCAATAGATAAACAGATCTCGT 59.084 40.000 0.00 0.00 37.38 4.18
523 527 5.915196 TGTCGCAATAGATAAACAGATCTCG 59.085 40.000 0.00 0.00 37.38 4.04
524 528 7.881643 ATGTCGCAATAGATAAACAGATCTC 57.118 36.000 0.00 0.00 37.38 2.75
539 543 9.747293 CAAGATGAGATCTATATATGTCGCAAT 57.253 33.333 0.00 0.00 39.08 3.56
540 544 8.743714 ACAAGATGAGATCTATATATGTCGCAA 58.256 33.333 0.00 0.00 39.08 4.85
541 545 8.286191 ACAAGATGAGATCTATATATGTCGCA 57.714 34.615 0.00 0.18 39.08 5.10
553 557 8.802267 GCTACTAAGGATAACAAGATGAGATCT 58.198 37.037 0.00 0.00 42.61 2.75
554 558 8.580720 TGCTACTAAGGATAACAAGATGAGATC 58.419 37.037 0.00 0.00 0.00 2.75
555 559 8.484214 TGCTACTAAGGATAACAAGATGAGAT 57.516 34.615 0.00 0.00 0.00 2.75
556 560 7.898014 TGCTACTAAGGATAACAAGATGAGA 57.102 36.000 0.00 0.00 0.00 3.27
557 561 7.168302 CGTTGCTACTAAGGATAACAAGATGAG 59.832 40.741 0.00 0.00 0.00 2.90
558 562 6.978659 CGTTGCTACTAAGGATAACAAGATGA 59.021 38.462 0.00 0.00 0.00 2.92
559 563 6.201044 CCGTTGCTACTAAGGATAACAAGATG 59.799 42.308 0.00 0.00 0.00 2.90
560 564 6.127140 ACCGTTGCTACTAAGGATAACAAGAT 60.127 38.462 0.00 0.00 0.00 2.40
561 565 5.186409 ACCGTTGCTACTAAGGATAACAAGA 59.814 40.000 0.00 0.00 0.00 3.02
562 566 5.416947 ACCGTTGCTACTAAGGATAACAAG 58.583 41.667 0.00 0.00 0.00 3.16
563 567 5.410355 ACCGTTGCTACTAAGGATAACAA 57.590 39.130 0.00 0.00 0.00 2.83
564 568 5.418524 TGTACCGTTGCTACTAAGGATAACA 59.581 40.000 0.00 0.00 0.00 2.41
565 569 5.894807 TGTACCGTTGCTACTAAGGATAAC 58.105 41.667 0.00 0.00 0.00 1.89
566 570 6.720112 ATGTACCGTTGCTACTAAGGATAA 57.280 37.500 0.00 0.00 0.00 1.75
567 571 7.449395 ACATATGTACCGTTGCTACTAAGGATA 59.551 37.037 6.56 0.00 0.00 2.59
568 572 6.267014 ACATATGTACCGTTGCTACTAAGGAT 59.733 38.462 6.56 0.00 0.00 3.24
569 573 5.595542 ACATATGTACCGTTGCTACTAAGGA 59.404 40.000 6.56 0.00 0.00 3.36
570 574 5.690409 CACATATGTACCGTTGCTACTAAGG 59.310 44.000 8.32 0.00 0.00 2.69
571 575 6.270815 ACACATATGTACCGTTGCTACTAAG 58.729 40.000 8.32 0.00 37.26 2.18
572 576 6.127675 TGACACATATGTACCGTTGCTACTAA 60.128 38.462 8.32 0.00 39.95 2.24
573 577 5.357596 TGACACATATGTACCGTTGCTACTA 59.642 40.000 8.32 0.00 39.95 1.82
574 578 4.158949 TGACACATATGTACCGTTGCTACT 59.841 41.667 8.32 0.00 39.95 2.57
575 579 4.426416 TGACACATATGTACCGTTGCTAC 58.574 43.478 8.32 0.00 39.95 3.58
576 580 4.158949 ACTGACACATATGTACCGTTGCTA 59.841 41.667 8.32 0.00 39.95 3.49
577 581 3.056107 ACTGACACATATGTACCGTTGCT 60.056 43.478 8.32 0.00 39.95 3.91
578 582 3.259064 ACTGACACATATGTACCGTTGC 58.741 45.455 8.32 0.00 39.95 4.17
579 583 4.328983 GGAACTGACACATATGTACCGTTG 59.671 45.833 18.78 6.88 39.95 4.10
580 584 4.501071 GGAACTGACACATATGTACCGTT 58.499 43.478 8.32 13.34 39.95 4.44
581 585 3.118884 GGGAACTGACACATATGTACCGT 60.119 47.826 8.32 2.22 39.95 4.83
582 586 3.454375 GGGAACTGACACATATGTACCG 58.546 50.000 8.32 5.24 39.95 4.02
583 587 3.454812 AGGGGAACTGACACATATGTACC 59.545 47.826 8.32 3.96 39.95 3.34
584 588 4.755266 AGGGGAACTGACACATATGTAC 57.245 45.455 8.32 6.65 39.95 2.90
585 589 5.030147 AGAAGGGGAACTGACACATATGTA 58.970 41.667 8.32 0.00 39.95 2.29
586 590 3.846588 AGAAGGGGAACTGACACATATGT 59.153 43.478 1.41 1.41 43.71 2.29
587 591 4.194640 CAGAAGGGGAACTGACACATATG 58.805 47.826 0.00 0.00 36.38 1.78
588 592 3.846588 ACAGAAGGGGAACTGACACATAT 59.153 43.478 0.00 0.00 37.54 1.78
589 593 3.248024 ACAGAAGGGGAACTGACACATA 58.752 45.455 0.00 0.00 37.54 2.29
590 594 2.039084 GACAGAAGGGGAACTGACACAT 59.961 50.000 0.00 0.00 37.54 3.21
591 595 1.416401 GACAGAAGGGGAACTGACACA 59.584 52.381 0.00 0.00 37.54 3.72
592 596 1.605712 CGACAGAAGGGGAACTGACAC 60.606 57.143 0.00 0.00 37.54 3.67
593 597 0.679505 CGACAGAAGGGGAACTGACA 59.320 55.000 0.00 0.00 37.54 3.58
594 598 0.670854 GCGACAGAAGGGGAACTGAC 60.671 60.000 0.00 0.00 37.54 3.51
595 599 0.832135 AGCGACAGAAGGGGAACTGA 60.832 55.000 0.00 0.00 37.54 3.41
596 600 0.671781 CAGCGACAGAAGGGGAACTG 60.672 60.000 0.00 0.00 39.65 3.16
597 601 1.674057 CAGCGACAGAAGGGGAACT 59.326 57.895 0.00 0.00 0.00 3.01
598 602 1.376037 CCAGCGACAGAAGGGGAAC 60.376 63.158 0.00 0.00 0.00 3.62
599 603 2.592993 CCCAGCGACAGAAGGGGAA 61.593 63.158 0.00 0.00 41.49 3.97
600 604 3.003173 CCCAGCGACAGAAGGGGA 61.003 66.667 0.00 0.00 41.49 4.81
601 605 2.317149 GATCCCAGCGACAGAAGGGG 62.317 65.000 0.00 0.00 41.77 4.79
602 606 1.144936 GATCCCAGCGACAGAAGGG 59.855 63.158 0.00 0.00 42.86 3.95
603 607 0.250234 TTGATCCCAGCGACAGAAGG 59.750 55.000 0.00 0.00 0.00 3.46
604 608 1.649664 CTTGATCCCAGCGACAGAAG 58.350 55.000 0.00 0.00 0.00 2.85
605 609 0.391661 GCTTGATCCCAGCGACAGAA 60.392 55.000 0.00 0.00 0.00 3.02
606 610 1.219124 GCTTGATCCCAGCGACAGA 59.781 57.895 0.00 0.00 0.00 3.41
607 611 1.078918 TGCTTGATCCCAGCGACAG 60.079 57.895 8.95 0.00 0.00 3.51
608 612 1.375908 GTGCTTGATCCCAGCGACA 60.376 57.895 8.95 0.00 0.00 4.35
609 613 2.109126 GGTGCTTGATCCCAGCGAC 61.109 63.158 8.95 8.11 0.00 5.19
610 614 2.268920 GGTGCTTGATCCCAGCGA 59.731 61.111 8.95 0.00 0.00 4.93
611 615 3.197790 CGGTGCTTGATCCCAGCG 61.198 66.667 12.87 12.87 44.70 5.18
612 616 0.811616 CTACGGTGCTTGATCCCAGC 60.812 60.000 6.99 6.99 0.00 4.85
613 617 0.824109 TCTACGGTGCTTGATCCCAG 59.176 55.000 0.00 0.00 0.00 4.45
614 618 0.824109 CTCTACGGTGCTTGATCCCA 59.176 55.000 0.00 0.00 0.00 4.37
615 619 0.824759 ACTCTACGGTGCTTGATCCC 59.175 55.000 0.00 0.00 0.00 3.85
616 620 1.476891 TCACTCTACGGTGCTTGATCC 59.523 52.381 0.00 0.00 37.16 3.36
617 621 2.941453 TCACTCTACGGTGCTTGATC 57.059 50.000 0.00 0.00 37.16 2.92
618 622 3.895232 ATTCACTCTACGGTGCTTGAT 57.105 42.857 0.00 0.00 37.16 2.57
619 623 3.325870 CAATTCACTCTACGGTGCTTGA 58.674 45.455 0.00 0.00 37.16 3.02
620 624 2.159653 GCAATTCACTCTACGGTGCTTG 60.160 50.000 0.00 0.00 37.16 4.01
621 625 2.076863 GCAATTCACTCTACGGTGCTT 58.923 47.619 0.00 0.00 37.16 3.91
622 626 1.001974 TGCAATTCACTCTACGGTGCT 59.998 47.619 0.00 0.00 37.16 4.40
623 627 1.438651 TGCAATTCACTCTACGGTGC 58.561 50.000 0.00 0.00 37.16 5.01
624 628 4.481930 TTTTGCAATTCACTCTACGGTG 57.518 40.909 0.00 0.00 38.44 4.94
654 658 7.031372 GCAATCTGATGCTTCAACTTGAAATA 58.969 34.615 19.63 0.00 43.06 1.40
1136 1149 2.295909 GCAAGTGCTCCAAACCATTGTA 59.704 45.455 0.00 0.00 38.21 2.41
1448 1475 9.491675 TGATTTTATTGTTGCATCTTCAAACAT 57.508 25.926 0.00 0.00 0.00 2.71
1616 1643 8.394877 CAATTGCTGCATCATGTTTCATTTAAT 58.605 29.630 1.84 0.00 0.00 1.40
2102 2192 2.086869 CATGTCCTTGTCCACATCCAC 58.913 52.381 0.00 0.00 30.48 4.02
2940 3956 2.554032 ACTAGTCAGTGCACAATTTGGC 59.446 45.455 21.04 10.11 32.25 4.52
3025 4041 3.467803 ACTACAACAGAGGAAGCAACAC 58.532 45.455 0.00 0.00 0.00 3.32
3146 4162 0.892358 CAAGGCCAAGAAGAGCAGCA 60.892 55.000 5.01 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.