Multiple sequence alignment - TraesCS1B01G247500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G247500 chr1B 100.000 3860 0 0 1 3860 438061651 438057792 0.000000e+00 7129.0
1 TraesCS1B01G247500 chr1B 84.774 729 81 18 3149 3860 116979594 116978879 0.000000e+00 704.0
2 TraesCS1B01G247500 chr1B 95.904 415 15 2 1511 1923 30443006 30442592 0.000000e+00 671.0
3 TraesCS1B01G247500 chr1B 81.713 432 56 14 3429 3852 351233646 351234062 4.780000e-89 339.0
4 TraesCS1B01G247500 chr1A 89.940 1332 70 22 211 1512 418602511 418603808 0.000000e+00 1659.0
5 TraesCS1B01G247500 chr1A 90.823 948 65 12 2911 3852 418616261 418617192 0.000000e+00 1249.0
6 TraesCS1B01G247500 chr1A 94.250 713 32 4 2210 2914 418609896 418610607 0.000000e+00 1081.0
7 TraesCS1B01G247500 chr1A 91.388 418 30 6 1510 1923 371940884 371940469 5.600000e-158 568.0
8 TraesCS1B01G247500 chr1A 91.154 260 7 9 1977 2226 418603875 418604128 4.780000e-89 339.0
9 TraesCS1B01G247500 chr1A 93.258 89 0 4 1924 2008 418603798 418603884 4.050000e-25 126.0
10 TraesCS1B01G247500 chr1D 94.023 686 33 5 2232 2913 325628059 325627378 0.000000e+00 1033.0
11 TraesCS1B01G247500 chr1D 94.108 628 35 2 887 1512 325629576 325628949 0.000000e+00 953.0
12 TraesCS1B01G247500 chr1D 96.178 314 5 5 1924 2232 325628959 325628648 1.240000e-139 507.0
13 TraesCS1B01G247500 chr1D 79.504 605 62 20 142 721 325630143 325629576 1.310000e-99 374.0
14 TraesCS1B01G247500 chr1D 94.444 108 6 0 2910 3017 325626731 325626624 2.390000e-37 167.0
15 TraesCS1B01G247500 chr2B 96.386 415 13 2 1512 1924 67303035 67302621 0.000000e+00 682.0
16 TraesCS1B01G247500 chr2B 86.215 428 30 21 3448 3860 385778353 385777940 1.650000e-118 436.0
17 TraesCS1B01G247500 chr2B 81.295 278 33 10 3555 3825 672723371 672723636 1.410000e-49 207.0
18 TraesCS1B01G247500 chr2B 86.957 69 4 3 3783 3849 372368756 372368821 5.350000e-09 73.1
19 TraesCS1B01G247500 chr3B 96.377 414 13 2 1512 1923 828254409 828254822 0.000000e+00 680.0
20 TraesCS1B01G247500 chr3B 91.971 411 29 3 1514 1923 790333376 790333783 1.200000e-159 573.0
21 TraesCS1B01G247500 chr3B 83.146 356 37 14 3505 3852 15082018 15081678 1.740000e-78 303.0
22 TraesCS1B01G247500 chr3B 79.771 262 44 7 3030 3285 801348762 801349020 8.520000e-42 182.0
23 TraesCS1B01G247500 chr3B 85.806 155 20 2 3029 3182 803525479 803525632 3.090000e-36 163.0
24 TraesCS1B01G247500 chr3B 77.863 262 49 7 3030 3285 801323327 801323585 1.860000e-33 154.0
25 TraesCS1B01G247500 chr6B 95.904 415 15 2 1511 1923 656168325 656167911 0.000000e+00 671.0
26 TraesCS1B01G247500 chr6B 95.652 414 14 4 1512 1923 718320478 718320067 0.000000e+00 662.0
27 TraesCS1B01G247500 chr5B 94.928 414 19 2 1512 1923 590374862 590374449 0.000000e+00 647.0
28 TraesCS1B01G247500 chrUn 90.909 418 33 5 1511 1924 241199630 241199214 1.210000e-154 556.0
29 TraesCS1B01G247500 chrUn 75.283 882 129 51 3031 3860 45816286 45817130 4.780000e-89 339.0
30 TraesCS1B01G247500 chrUn 75.283 882 129 51 3031 3860 347260737 347261581 4.780000e-89 339.0
31 TraesCS1B01G247500 chr7B 88.479 434 41 8 1512 1938 4230440 4230009 2.060000e-142 516.0
32 TraesCS1B01G247500 chr5D 87.143 420 45 8 1514 1931 33680118 33679706 5.840000e-128 468.0
33 TraesCS1B01G247500 chr3A 81.439 264 40 3 3030 3285 664161685 664161947 1.410000e-49 207.0
34 TraesCS1B01G247500 chr3D 80.989 263 42 6 3030 3285 530431649 530431910 6.540000e-48 202.0
35 TraesCS1B01G247500 chr2D 77.722 395 45 17 3462 3850 595080052 595079695 6.540000e-48 202.0
36 TraesCS1B01G247500 chr7D 88.435 147 14 3 3023 3169 535732618 535732761 1.430000e-39 174.0
37 TraesCS1B01G247500 chr7D 89.474 76 5 3 3787 3860 633815346 633815420 4.110000e-15 93.5
38 TraesCS1B01G247500 chr7A 93.651 63 2 2 3800 3860 722772213 722772151 4.110000e-15 93.5
39 TraesCS1B01G247500 chr7A 90.476 63 6 0 3787 3849 652277388 652277450 2.470000e-12 84.2
40 TraesCS1B01G247500 chr4A 86.842 76 8 2 3787 3860 72879389 72879314 2.470000e-12 84.2
41 TraesCS1B01G247500 chr5A 85.915 71 9 1 3780 3849 561185650 561185720 1.490000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G247500 chr1B 438057792 438061651 3859 True 7129.0 7129 100.000000 1 3860 1 chr1B.!!$R3 3859
1 TraesCS1B01G247500 chr1B 116978879 116979594 715 True 704.0 704 84.774000 3149 3860 1 chr1B.!!$R2 711
2 TraesCS1B01G247500 chr1A 418616261 418617192 931 False 1249.0 1249 90.823000 2911 3852 1 chr1A.!!$F2 941
3 TraesCS1B01G247500 chr1A 418609896 418610607 711 False 1081.0 1081 94.250000 2210 2914 1 chr1A.!!$F1 704
4 TraesCS1B01G247500 chr1A 418602511 418604128 1617 False 708.0 1659 91.450667 211 2226 3 chr1A.!!$F3 2015
5 TraesCS1B01G247500 chr1D 325626624 325630143 3519 True 606.8 1033 91.651400 142 3017 5 chr1D.!!$R1 2875
6 TraesCS1B01G247500 chrUn 45816286 45817130 844 False 339.0 339 75.283000 3031 3860 1 chrUn.!!$F1 829
7 TraesCS1B01G247500 chrUn 347260737 347261581 844 False 339.0 339 75.283000 3031 3860 1 chrUn.!!$F2 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 555 0.028110 GCCGATGAAGTTCAATCGCC 59.972 55.0 21.91 13.69 35.45 5.54 F
1554 1620 0.032912 TGCTCCACACCCCTATACGA 60.033 55.0 0.00 0.00 0.00 3.43 F
1916 1982 0.032815 GCACCCGAGAGCTCTAATCC 59.967 60.0 18.25 2.78 0.00 3.01 F
1925 1991 0.106619 AGCTCTAATCCTCGTCCGGT 60.107 55.0 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 1963 0.032815 GGATTAGAGCTCTCGGGTGC 59.967 60.000 22.17 0.00 34.09 5.01 R
2799 3499 0.383246 CGCTATTCTCCGACGACGAG 60.383 60.000 9.28 4.75 42.66 4.18 R
2843 3543 1.131126 TCCGTTAGTTCACCGTCGATC 59.869 52.381 0.00 0.00 0.00 3.69 R
3061 4411 2.148916 TCAAACTGAACATCGAGCGT 57.851 45.000 0.00 0.00 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.436843 AATTGGTTTGTTGGAGATATCGAC 57.563 37.500 0.00 0.00 0.00 4.20
26 27 4.545208 TGGTTTGTTGGAGATATCGACA 57.455 40.909 0.00 0.00 0.00 4.35
27 28 4.900684 TGGTTTGTTGGAGATATCGACAA 58.099 39.130 9.99 9.99 36.90 3.18
28 29 5.309638 TGGTTTGTTGGAGATATCGACAAA 58.690 37.500 17.68 17.68 42.71 2.83
29 30 5.765677 TGGTTTGTTGGAGATATCGACAAAA 59.234 36.000 20.68 12.99 44.91 2.44
30 31 6.072728 TGGTTTGTTGGAGATATCGACAAAAG 60.073 38.462 20.68 0.00 44.91 2.27
31 32 6.314784 GTTTGTTGGAGATATCGACAAAAGG 58.685 40.000 20.68 0.00 44.91 3.11
32 33 3.938963 TGTTGGAGATATCGACAAAAGGC 59.061 43.478 14.11 5.66 0.00 4.35
33 34 3.194005 TGGAGATATCGACAAAAGGCC 57.806 47.619 0.00 0.00 0.00 5.19
34 35 2.771943 TGGAGATATCGACAAAAGGCCT 59.228 45.455 0.00 0.00 0.00 5.19
35 36 3.134458 GGAGATATCGACAAAAGGCCTG 58.866 50.000 5.69 0.00 0.00 4.85
36 37 3.134458 GAGATATCGACAAAAGGCCTGG 58.866 50.000 5.69 0.97 0.00 4.45
37 38 2.505819 AGATATCGACAAAAGGCCTGGT 59.494 45.455 5.69 5.11 0.00 4.00
38 39 2.871096 TATCGACAAAAGGCCTGGTT 57.129 45.000 5.69 0.00 0.00 3.67
39 40 1.247567 ATCGACAAAAGGCCTGGTTG 58.752 50.000 22.19 22.19 0.00 3.77
40 41 1.007387 CGACAAAAGGCCTGGTTGC 60.007 57.895 23.25 16.55 0.00 4.17
41 42 1.733402 CGACAAAAGGCCTGGTTGCA 61.733 55.000 23.25 0.00 0.00 4.08
42 43 0.249447 GACAAAAGGCCTGGTTGCAC 60.249 55.000 23.25 16.00 0.00 4.57
43 44 0.687427 ACAAAAGGCCTGGTTGCACT 60.687 50.000 23.25 7.13 0.00 4.40
44 45 0.249573 CAAAAGGCCTGGTTGCACTG 60.250 55.000 5.69 0.00 0.00 3.66
45 46 2.031674 AAAAGGCCTGGTTGCACTGC 62.032 55.000 5.69 0.00 0.00 4.40
46 47 3.736996 AAGGCCTGGTTGCACTGCA 62.737 57.895 5.69 0.00 36.47 4.41
47 48 2.993264 GGCCTGGTTGCACTGCAT 60.993 61.111 4.10 0.00 38.76 3.96
48 49 2.570181 GCCTGGTTGCACTGCATC 59.430 61.111 4.10 3.92 38.76 3.91
49 50 1.975407 GCCTGGTTGCACTGCATCT 60.975 57.895 4.10 0.00 38.76 2.90
50 51 1.880894 CCTGGTTGCACTGCATCTG 59.119 57.895 4.10 4.93 38.76 2.90
51 52 0.607217 CCTGGTTGCACTGCATCTGA 60.607 55.000 4.10 0.00 38.76 3.27
52 53 0.803117 CTGGTTGCACTGCATCTGAG 59.197 55.000 4.10 1.61 38.76 3.35
53 54 1.239296 TGGTTGCACTGCATCTGAGC 61.239 55.000 4.10 0.00 38.76 4.26
54 55 0.959372 GGTTGCACTGCATCTGAGCT 60.959 55.000 4.10 0.00 38.76 4.09
55 56 0.879765 GTTGCACTGCATCTGAGCTT 59.120 50.000 4.10 0.00 38.76 3.74
56 57 2.079158 GTTGCACTGCATCTGAGCTTA 58.921 47.619 4.10 0.00 38.76 3.09
57 58 2.019948 TGCACTGCATCTGAGCTTAG 57.980 50.000 0.00 0.00 31.71 2.18
58 59 1.277273 TGCACTGCATCTGAGCTTAGT 59.723 47.619 5.29 0.00 31.71 2.24
59 60 2.289882 TGCACTGCATCTGAGCTTAGTT 60.290 45.455 5.29 0.00 31.71 2.24
60 61 2.746362 GCACTGCATCTGAGCTTAGTTT 59.254 45.455 5.29 0.00 34.99 2.66
61 62 3.181512 GCACTGCATCTGAGCTTAGTTTC 60.182 47.826 5.29 0.00 34.99 2.78
62 63 3.373439 CACTGCATCTGAGCTTAGTTTCC 59.627 47.826 5.29 0.00 34.99 3.13
63 64 3.008375 ACTGCATCTGAGCTTAGTTTCCA 59.992 43.478 5.29 0.00 34.99 3.53
64 65 4.197750 CTGCATCTGAGCTTAGTTTCCAT 58.802 43.478 5.29 0.00 34.99 3.41
65 66 5.104776 ACTGCATCTGAGCTTAGTTTCCATA 60.105 40.000 5.29 0.00 34.99 2.74
66 67 5.744171 TGCATCTGAGCTTAGTTTCCATAA 58.256 37.500 5.29 0.00 34.99 1.90
67 68 5.819379 TGCATCTGAGCTTAGTTTCCATAAG 59.181 40.000 5.29 0.00 34.09 1.73
68 69 6.051717 GCATCTGAGCTTAGTTTCCATAAGA 58.948 40.000 5.29 0.00 32.96 2.10
69 70 6.709846 GCATCTGAGCTTAGTTTCCATAAGAT 59.290 38.462 5.29 0.00 32.96 2.40
70 71 7.307870 GCATCTGAGCTTAGTTTCCATAAGATG 60.308 40.741 5.29 0.00 40.01 2.90
71 72 6.051717 TCTGAGCTTAGTTTCCATAAGATGC 58.948 40.000 5.29 0.00 32.96 3.91
72 73 5.744171 TGAGCTTAGTTTCCATAAGATGCA 58.256 37.500 0.00 0.00 32.96 3.96
73 74 5.819379 TGAGCTTAGTTTCCATAAGATGCAG 59.181 40.000 0.00 0.00 32.96 4.41
74 75 5.994250 AGCTTAGTTTCCATAAGATGCAGA 58.006 37.500 0.00 0.00 32.96 4.26
75 76 6.054295 AGCTTAGTTTCCATAAGATGCAGAG 58.946 40.000 0.00 0.00 32.96 3.35
76 77 5.819901 GCTTAGTTTCCATAAGATGCAGAGT 59.180 40.000 0.00 0.00 32.96 3.24
77 78 6.317391 GCTTAGTTTCCATAAGATGCAGAGTT 59.683 38.462 0.00 0.00 32.96 3.01
78 79 7.615582 TTAGTTTCCATAAGATGCAGAGTTG 57.384 36.000 0.00 0.00 0.00 3.16
79 80 4.946157 AGTTTCCATAAGATGCAGAGTTGG 59.054 41.667 0.00 0.00 0.00 3.77
80 81 4.842531 TTCCATAAGATGCAGAGTTGGA 57.157 40.909 0.00 0.00 0.00 3.53
81 82 5.378230 TTCCATAAGATGCAGAGTTGGAT 57.622 39.130 8.46 0.00 38.16 3.41
82 83 6.499106 TTCCATAAGATGCAGAGTTGGATA 57.501 37.500 8.46 0.29 35.28 2.59
83 84 5.858381 TCCATAAGATGCAGAGTTGGATAC 58.142 41.667 0.00 0.00 35.28 2.24
84 85 5.604231 TCCATAAGATGCAGAGTTGGATACT 59.396 40.000 0.00 0.00 40.71 2.12
85 86 6.100279 TCCATAAGATGCAGAGTTGGATACTT 59.900 38.462 0.00 0.00 37.17 2.24
86 87 6.204301 CCATAAGATGCAGAGTTGGATACTTG 59.796 42.308 0.00 0.00 37.17 3.16
87 88 4.833478 AGATGCAGAGTTGGATACTTGT 57.167 40.909 0.00 0.00 37.17 3.16
88 89 4.764172 AGATGCAGAGTTGGATACTTGTC 58.236 43.478 0.00 0.00 37.17 3.18
89 90 4.223700 AGATGCAGAGTTGGATACTTGTCA 59.776 41.667 0.00 0.00 37.17 3.58
90 91 3.664107 TGCAGAGTTGGATACTTGTCAC 58.336 45.455 0.00 0.00 37.17 3.67
91 92 3.324846 TGCAGAGTTGGATACTTGTCACT 59.675 43.478 0.00 0.00 37.17 3.41
92 93 3.929610 GCAGAGTTGGATACTTGTCACTC 59.070 47.826 0.00 0.00 37.17 3.51
93 94 4.169508 CAGAGTTGGATACTTGTCACTCG 58.830 47.826 0.00 0.00 37.17 4.18
94 95 4.079970 AGAGTTGGATACTTGTCACTCGA 58.920 43.478 0.00 0.00 37.17 4.04
95 96 4.156922 AGAGTTGGATACTTGTCACTCGAG 59.843 45.833 11.84 11.84 37.17 4.04
96 97 3.193691 AGTTGGATACTTGTCACTCGAGG 59.806 47.826 18.41 5.96 31.29 4.63
97 98 1.476891 TGGATACTTGTCACTCGAGGC 59.523 52.381 18.41 7.16 37.61 4.70
98 99 1.534175 GGATACTTGTCACTCGAGGCG 60.534 57.143 18.41 7.62 32.04 5.52
99 100 0.456221 ATACTTGTCACTCGAGGCGG 59.544 55.000 18.41 6.02 32.04 6.13
100 101 1.592400 TACTTGTCACTCGAGGCGGG 61.592 60.000 18.41 3.34 32.04 6.13
101 102 2.915659 TTGTCACTCGAGGCGGGT 60.916 61.111 18.41 0.00 43.31 5.28
102 103 1.592400 CTTGTCACTCGAGGCGGGTA 61.592 60.000 18.41 0.00 39.12 3.69
103 104 1.592400 TTGTCACTCGAGGCGGGTAG 61.592 60.000 18.41 0.00 39.12 3.18
104 105 2.439701 TCACTCGAGGCGGGTAGG 60.440 66.667 18.41 0.00 39.12 3.18
105 106 2.754658 CACTCGAGGCGGGTAGGT 60.755 66.667 18.41 0.00 39.12 3.08
106 107 2.754658 ACTCGAGGCGGGTAGGTG 60.755 66.667 18.41 0.00 39.48 4.00
107 108 4.208686 CTCGAGGCGGGTAGGTGC 62.209 72.222 3.91 0.00 0.00 5.01
108 109 4.753662 TCGAGGCGGGTAGGTGCT 62.754 66.667 0.00 0.00 0.00 4.40
109 110 2.831742 CGAGGCGGGTAGGTGCTA 60.832 66.667 0.00 0.00 0.00 3.49
110 111 2.420568 CGAGGCGGGTAGGTGCTAA 61.421 63.158 0.00 0.00 0.00 3.09
111 112 1.902556 GAGGCGGGTAGGTGCTAAA 59.097 57.895 0.00 0.00 0.00 1.85
112 113 0.251073 GAGGCGGGTAGGTGCTAAAA 59.749 55.000 0.00 0.00 0.00 1.52
113 114 0.916809 AGGCGGGTAGGTGCTAAAAT 59.083 50.000 0.00 0.00 0.00 1.82
114 115 2.103601 GAGGCGGGTAGGTGCTAAAATA 59.896 50.000 0.00 0.00 0.00 1.40
115 116 2.506644 AGGCGGGTAGGTGCTAAAATAA 59.493 45.455 0.00 0.00 0.00 1.40
116 117 2.615447 GGCGGGTAGGTGCTAAAATAAC 59.385 50.000 0.00 0.00 0.00 1.89
117 118 2.615447 GCGGGTAGGTGCTAAAATAACC 59.385 50.000 0.00 0.00 0.00 2.85
118 119 3.683564 GCGGGTAGGTGCTAAAATAACCT 60.684 47.826 0.00 0.00 46.14 3.50
119 120 4.520179 CGGGTAGGTGCTAAAATAACCTT 58.480 43.478 0.00 0.00 41.65 3.50
120 121 4.334481 CGGGTAGGTGCTAAAATAACCTTG 59.666 45.833 0.00 0.00 41.65 3.61
121 122 4.097437 GGGTAGGTGCTAAAATAACCTTGC 59.903 45.833 0.00 0.00 41.65 4.01
122 123 4.703093 GGTAGGTGCTAAAATAACCTTGCA 59.297 41.667 0.00 0.00 41.65 4.08
123 124 5.359860 GGTAGGTGCTAAAATAACCTTGCAT 59.640 40.000 0.00 0.00 41.65 3.96
124 125 6.127451 GGTAGGTGCTAAAATAACCTTGCATT 60.127 38.462 0.00 0.00 41.65 3.56
125 126 7.067737 GGTAGGTGCTAAAATAACCTTGCATTA 59.932 37.037 0.00 0.00 41.65 1.90
126 127 7.475137 AGGTGCTAAAATAACCTTGCATTAA 57.525 32.000 0.00 0.00 41.65 1.40
127 128 7.320399 AGGTGCTAAAATAACCTTGCATTAAC 58.680 34.615 0.00 0.00 41.65 2.01
128 129 7.178451 AGGTGCTAAAATAACCTTGCATTAACT 59.822 33.333 0.00 0.00 41.65 2.24
129 130 8.463607 GGTGCTAAAATAACCTTGCATTAACTA 58.536 33.333 0.00 0.00 32.98 2.24
130 131 9.849166 GTGCTAAAATAACCTTGCATTAACTAA 57.151 29.630 0.00 0.00 32.98 2.24
163 164 7.725251 ACTAGATGAATCCTTCTCTGATTGTC 58.275 38.462 0.00 0.00 32.74 3.18
166 167 6.612456 AGATGAATCCTTCTCTGATTGTCTCT 59.388 38.462 0.00 0.00 32.74 3.10
179 180 1.478631 TGTCTCTGATGATCGCCACT 58.521 50.000 0.00 0.00 0.00 4.00
188 189 2.768253 TGATCGCCACTTCATCACTT 57.232 45.000 0.00 0.00 0.00 3.16
189 190 2.621338 TGATCGCCACTTCATCACTTC 58.379 47.619 0.00 0.00 0.00 3.01
197 198 3.588955 CACTTCATCACTTCGGATGTCA 58.411 45.455 0.00 0.00 44.00 3.58
198 199 4.186926 CACTTCATCACTTCGGATGTCAT 58.813 43.478 0.00 0.00 44.00 3.06
199 200 4.633126 CACTTCATCACTTCGGATGTCATT 59.367 41.667 0.00 0.00 44.00 2.57
200 201 5.812127 CACTTCATCACTTCGGATGTCATTA 59.188 40.000 0.00 0.00 44.00 1.90
201 202 6.313658 CACTTCATCACTTCGGATGTCATTAA 59.686 38.462 0.00 0.00 44.00 1.40
202 203 7.011763 CACTTCATCACTTCGGATGTCATTAAT 59.988 37.037 0.00 0.00 44.00 1.40
203 204 7.554118 ACTTCATCACTTCGGATGTCATTAATT 59.446 33.333 0.00 0.00 44.00 1.40
204 205 8.956533 TTCATCACTTCGGATGTCATTAATTA 57.043 30.769 0.00 0.00 44.00 1.40
205 206 8.956533 TCATCACTTCGGATGTCATTAATTAA 57.043 30.769 0.00 0.00 44.00 1.40
206 207 9.559732 TCATCACTTCGGATGTCATTAATTAAT 57.440 29.630 4.81 4.81 44.00 1.40
241 242 1.203063 TGCTGAGGACACTAGTCACCT 60.203 52.381 14.87 14.87 46.80 4.00
340 351 4.394920 ACCAATGGTTAGTATTTGTCAGCG 59.605 41.667 0.00 0.00 27.29 5.18
342 353 5.447279 CCAATGGTTAGTATTTGTCAGCGTC 60.447 44.000 0.00 0.00 0.00 5.19
361 372 4.344448 CGTCGTTCTTATCAGAGGAGAAC 58.656 47.826 14.55 14.55 43.52 3.01
431 450 7.744733 TCAATCATTGGGATGCACTATTACTA 58.255 34.615 0.00 0.00 36.02 1.82
432 451 7.661437 TCAATCATTGGGATGCACTATTACTAC 59.339 37.037 0.00 0.00 36.02 2.73
483 511 3.929417 TGTCTTGTTTAAACACGTCCG 57.071 42.857 20.43 7.33 38.92 4.79
527 555 0.028110 GCCGATGAAGTTCAATCGCC 59.972 55.000 21.91 13.69 35.45 5.54
528 556 0.301687 CCGATGAAGTTCAATCGCCG 59.698 55.000 21.91 15.03 35.45 6.46
529 557 0.301687 CGATGAAGTTCAATCGCCGG 59.698 55.000 10.14 0.00 0.00 6.13
530 558 0.657840 GATGAAGTTCAATCGCCGGG 59.342 55.000 10.14 0.00 0.00 5.73
531 559 0.748005 ATGAAGTTCAATCGCCGGGG 60.748 55.000 13.31 13.31 0.00 5.73
653 691 3.642755 GGTTGTCACCTGTCAGCG 58.357 61.111 0.00 0.00 40.44 5.18
668 706 1.621814 TCAGCGGTTACAAAGCTAGGT 59.378 47.619 0.00 0.00 39.48 3.08
732 771 2.001076 AAGAAGGCTTCTGGTTTGGG 57.999 50.000 29.19 0.00 40.59 4.12
742 781 0.974010 CTGGTTTGGGCATCATGGCT 60.974 55.000 11.60 0.00 43.20 4.75
746 785 1.321805 TTTGGGCATCATGGCTTCCG 61.322 55.000 11.60 0.00 43.20 4.30
747 786 2.192979 GGGCATCATGGCTTCCGA 59.807 61.111 11.60 0.00 43.20 4.55
772 811 4.379243 CGTGCCCCTTCGTGCTCT 62.379 66.667 0.00 0.00 0.00 4.09
794 838 1.810151 GGCTTGACTTTTCCGTGCATA 59.190 47.619 0.00 0.00 0.00 3.14
797 841 3.914364 GCTTGACTTTTCCGTGCATAAAG 59.086 43.478 0.00 0.84 35.53 1.85
826 870 4.659002 CGTACGCACGTAGAGGTC 57.341 61.111 0.52 0.00 43.31 3.85
827 871 1.296432 CGTACGCACGTAGAGGTCG 60.296 63.158 0.52 0.00 43.31 4.79
828 872 1.582168 GTACGCACGTAGAGGTCGC 60.582 63.158 2.62 0.00 0.00 5.19
859 903 1.504647 GAGGGCGCTATAAAACCGGC 61.505 60.000 7.64 0.00 45.29 6.13
861 905 1.525306 GGCGCTATAAAACCGGCCT 60.525 57.895 7.64 0.00 41.00 5.19
883 927 4.719369 GCCGTGGCTTCTCGTCGT 62.719 66.667 2.98 0.00 38.26 4.34
890 934 1.587933 GGCTTCTCGTCGTCTCCACT 61.588 60.000 0.00 0.00 0.00 4.00
892 936 1.157585 CTTCTCGTCGTCTCCACTGA 58.842 55.000 0.00 0.00 0.00 3.41
896 940 0.035343 TCGTCGTCTCCACTGATCCT 60.035 55.000 0.00 0.00 0.00 3.24
897 941 0.811915 CGTCGTCTCCACTGATCCTT 59.188 55.000 0.00 0.00 0.00 3.36
931 984 2.416432 CCGGACGGTTCCTCTCCTC 61.416 68.421 0.00 0.00 40.23 3.71
971 1025 0.851332 TCTCCTCACCTCCTCCCTCA 60.851 60.000 0.00 0.00 0.00 3.86
1035 1089 1.071471 CAAAGAGGACGTGGCCACT 59.929 57.895 32.28 19.76 0.00 4.00
1111 1165 4.415150 CCATGTCCGCCAGCCACT 62.415 66.667 0.00 0.00 0.00 4.00
1203 1269 3.411351 CCCAAAGCCGACGTCGTG 61.411 66.667 33.49 24.66 37.74 4.35
1218 1284 3.771160 GTGGAGGTGGCGTCGGAT 61.771 66.667 0.00 0.00 0.00 4.18
1317 1383 4.408821 GCCATGGTGGACGAGGCA 62.409 66.667 14.67 0.00 44.59 4.75
1330 1396 4.711949 AGGCAGCGCAACCTCCTG 62.712 66.667 14.90 0.60 0.00 3.86
1366 1432 1.094785 GCTGCCGAAATACACCATGT 58.905 50.000 0.00 0.00 0.00 3.21
1434 1500 4.537751 AGGAAGCAGTAGTAGCACTCATA 58.462 43.478 0.00 0.00 0.00 2.15
1448 1514 3.055094 GCACTCATAAAGGAGGAGACCAA 60.055 47.826 0.00 0.00 38.28 3.67
1470 1536 1.040339 CCGAGGAGACCAAGGAGGAG 61.040 65.000 0.00 0.00 41.22 3.69
1507 1573 1.066257 ACAAACGAGCGTGGTACGT 59.934 52.632 0.00 0.00 44.73 3.57
1508 1574 0.936297 ACAAACGAGCGTGGTACGTC 60.936 55.000 0.00 0.00 44.73 4.34
1509 1575 0.662374 CAAACGAGCGTGGTACGTCT 60.662 55.000 0.00 1.19 44.73 4.18
1510 1576 0.386478 AAACGAGCGTGGTACGTCTC 60.386 55.000 0.00 12.45 44.73 3.36
1512 1578 2.099831 GAGCGTGGTACGTCTCGG 59.900 66.667 0.00 0.00 44.73 4.63
1513 1579 2.359107 AGCGTGGTACGTCTCGGA 60.359 61.111 0.00 0.00 44.73 4.55
1514 1580 1.915614 GAGCGTGGTACGTCTCGGAA 61.916 60.000 0.00 0.00 44.73 4.30
1515 1581 1.081242 GCGTGGTACGTCTCGGAAA 60.081 57.895 0.00 0.00 44.73 3.13
1516 1582 0.664166 GCGTGGTACGTCTCGGAAAA 60.664 55.000 0.00 0.00 44.73 2.29
1517 1583 1.986698 CGTGGTACGTCTCGGAAAAT 58.013 50.000 0.00 0.00 36.74 1.82
1518 1584 2.731968 GCGTGGTACGTCTCGGAAAATA 60.732 50.000 0.00 0.00 44.73 1.40
1519 1585 2.848302 CGTGGTACGTCTCGGAAAATAC 59.152 50.000 0.00 0.00 36.74 1.89
1520 1586 3.670359 CGTGGTACGTCTCGGAAAATACA 60.670 47.826 0.00 0.00 36.74 2.29
1521 1587 3.609807 GTGGTACGTCTCGGAAAATACAC 59.390 47.826 0.00 0.00 0.00 2.90
1522 1588 3.255395 TGGTACGTCTCGGAAAATACACA 59.745 43.478 0.00 0.00 0.00 3.72
1523 1589 3.855950 GGTACGTCTCGGAAAATACACAG 59.144 47.826 0.00 0.00 0.00 3.66
1524 1590 2.955614 ACGTCTCGGAAAATACACAGG 58.044 47.619 0.00 0.00 0.00 4.00
1525 1591 2.559668 ACGTCTCGGAAAATACACAGGA 59.440 45.455 0.00 0.00 0.00 3.86
1526 1592 3.179830 CGTCTCGGAAAATACACAGGAG 58.820 50.000 0.00 0.00 0.00 3.69
1527 1593 2.930682 GTCTCGGAAAATACACAGGAGC 59.069 50.000 0.00 0.00 0.00 4.70
1528 1594 2.832129 TCTCGGAAAATACACAGGAGCT 59.168 45.455 0.00 0.00 0.00 4.09
1529 1595 3.119101 TCTCGGAAAATACACAGGAGCTC 60.119 47.826 4.71 4.71 0.00 4.09
1530 1596 2.832129 TCGGAAAATACACAGGAGCTCT 59.168 45.455 14.64 0.00 0.00 4.09
1531 1597 3.119101 TCGGAAAATACACAGGAGCTCTC 60.119 47.826 14.64 3.76 0.00 3.20
1532 1598 3.190874 GGAAAATACACAGGAGCTCTCG 58.809 50.000 14.64 7.53 0.00 4.04
1533 1599 2.969628 AAATACACAGGAGCTCTCGG 57.030 50.000 14.64 7.21 0.00 4.63
1534 1600 1.115467 AATACACAGGAGCTCTCGGG 58.885 55.000 14.64 8.66 0.00 5.14
1535 1601 0.033011 ATACACAGGAGCTCTCGGGT 60.033 55.000 14.64 14.26 0.00 5.28
1536 1602 0.965866 TACACAGGAGCTCTCGGGTG 60.966 60.000 14.64 17.38 39.01 4.61
1537 1603 3.386237 ACAGGAGCTCTCGGGTGC 61.386 66.667 14.64 0.00 0.00 5.01
1538 1604 3.073735 CAGGAGCTCTCGGGTGCT 61.074 66.667 12.49 12.49 44.69 4.40
1541 1607 3.071206 GAGCTCTCGGGTGCTCCA 61.071 66.667 25.39 0.00 46.93 3.86
1542 1608 3.363844 GAGCTCTCGGGTGCTCCAC 62.364 68.421 25.39 4.50 46.93 4.02
1543 1609 3.695606 GCTCTCGGGTGCTCCACA 61.696 66.667 7.20 0.00 35.86 4.17
1553 1619 0.104304 GTGCTCCACACCCCTATACG 59.896 60.000 0.00 0.00 44.02 3.06
1554 1620 0.032912 TGCTCCACACCCCTATACGA 60.033 55.000 0.00 0.00 0.00 3.43
1555 1621 1.117150 GCTCCACACCCCTATACGAA 58.883 55.000 0.00 0.00 0.00 3.85
1556 1622 1.483415 GCTCCACACCCCTATACGAAA 59.517 52.381 0.00 0.00 0.00 3.46
1557 1623 2.093341 GCTCCACACCCCTATACGAAAA 60.093 50.000 0.00 0.00 0.00 2.29
1558 1624 3.620472 GCTCCACACCCCTATACGAAAAA 60.620 47.826 0.00 0.00 0.00 1.94
1559 1625 4.777463 CTCCACACCCCTATACGAAAAAT 58.223 43.478 0.00 0.00 0.00 1.82
1560 1626 5.685599 GCTCCACACCCCTATACGAAAAATA 60.686 44.000 0.00 0.00 0.00 1.40
1561 1627 6.503560 TCCACACCCCTATACGAAAAATAT 57.496 37.500 0.00 0.00 0.00 1.28
1562 1628 6.902408 TCCACACCCCTATACGAAAAATATT 58.098 36.000 0.00 0.00 0.00 1.28
1563 1629 6.993902 TCCACACCCCTATACGAAAAATATTC 59.006 38.462 0.00 0.00 0.00 1.75
1564 1630 6.073440 CCACACCCCTATACGAAAAATATTCG 60.073 42.308 8.86 8.86 46.36 3.34
1611 1677 7.519032 AAAAGTCTAAATTTTCGGGATGTCA 57.481 32.000 0.00 0.00 0.00 3.58
1612 1678 7.519032 AAAGTCTAAATTTTCGGGATGTCAA 57.481 32.000 0.00 0.00 0.00 3.18
1613 1679 7.519032 AAGTCTAAATTTTCGGGATGTCAAA 57.481 32.000 0.00 0.00 0.00 2.69
1614 1680 6.909909 AGTCTAAATTTTCGGGATGTCAAAC 58.090 36.000 0.00 0.00 0.00 2.93
1615 1681 6.072119 AGTCTAAATTTTCGGGATGTCAAACC 60.072 38.462 0.00 0.00 0.00 3.27
1616 1682 6.007703 TCTAAATTTTCGGGATGTCAAACCT 58.992 36.000 0.00 0.00 0.00 3.50
1617 1683 4.519540 AATTTTCGGGATGTCAAACCTG 57.480 40.909 0.00 0.00 0.00 4.00
1618 1684 1.904287 TTTCGGGATGTCAAACCTGG 58.096 50.000 0.00 0.00 33.75 4.45
1619 1685 0.768622 TTCGGGATGTCAAACCTGGT 59.231 50.000 0.00 0.00 33.75 4.00
1620 1686 0.323629 TCGGGATGTCAAACCTGGTC 59.676 55.000 0.00 0.00 33.75 4.02
1621 1687 0.676782 CGGGATGTCAAACCTGGTCC 60.677 60.000 0.00 0.00 0.00 4.46
1622 1688 0.323451 GGGATGTCAAACCTGGTCCC 60.323 60.000 0.00 0.00 38.61 4.46
1623 1689 0.323451 GGATGTCAAACCTGGTCCCC 60.323 60.000 0.00 0.00 0.00 4.81
1624 1690 0.323451 GATGTCAAACCTGGTCCCCC 60.323 60.000 0.00 0.00 0.00 5.40
1625 1691 1.071314 ATGTCAAACCTGGTCCCCCA 61.071 55.000 0.00 0.00 38.87 4.96
1626 1692 1.289982 TGTCAAACCTGGTCCCCCAA 61.290 55.000 0.00 0.00 41.27 4.12
1627 1693 0.114364 GTCAAACCTGGTCCCCCAAT 59.886 55.000 0.00 0.00 41.27 3.16
1628 1694 0.407918 TCAAACCTGGTCCCCCAATC 59.592 55.000 0.00 0.00 41.27 2.67
1629 1695 0.409484 CAAACCTGGTCCCCCAATCT 59.591 55.000 0.00 0.00 41.27 2.40
1630 1696 1.638589 CAAACCTGGTCCCCCAATCTA 59.361 52.381 0.00 0.00 41.27 1.98
1631 1697 1.296002 AACCTGGTCCCCCAATCTAC 58.704 55.000 0.00 0.00 41.27 2.59
1632 1698 0.421904 ACCTGGTCCCCCAATCTACT 59.578 55.000 0.00 0.00 41.27 2.57
1633 1699 1.203570 ACCTGGTCCCCCAATCTACTT 60.204 52.381 0.00 0.00 41.27 2.24
1634 1700 1.490910 CCTGGTCCCCCAATCTACTTC 59.509 57.143 0.00 0.00 41.27 3.01
1635 1701 1.490910 CTGGTCCCCCAATCTACTTCC 59.509 57.143 0.00 0.00 41.27 3.46
1636 1702 0.468648 GGTCCCCCAATCTACTTCCG 59.531 60.000 0.00 0.00 0.00 4.30
1637 1703 1.201424 GTCCCCCAATCTACTTCCGT 58.799 55.000 0.00 0.00 0.00 4.69
1638 1704 1.134491 GTCCCCCAATCTACTTCCGTG 60.134 57.143 0.00 0.00 0.00 4.94
1639 1705 0.463833 CCCCCAATCTACTTCCGTGC 60.464 60.000 0.00 0.00 0.00 5.34
1640 1706 0.810031 CCCCAATCTACTTCCGTGCG 60.810 60.000 0.00 0.00 0.00 5.34
1641 1707 0.174845 CCCAATCTACTTCCGTGCGA 59.825 55.000 0.00 0.00 0.00 5.10
1642 1708 1.404986 CCCAATCTACTTCCGTGCGAA 60.405 52.381 0.00 0.00 0.00 4.70
1643 1709 2.343101 CCAATCTACTTCCGTGCGAAA 58.657 47.619 0.00 0.00 0.00 3.46
1644 1710 2.936498 CCAATCTACTTCCGTGCGAAAT 59.064 45.455 0.00 0.00 0.00 2.17
1645 1711 3.374058 CCAATCTACTTCCGTGCGAAATT 59.626 43.478 0.00 0.00 0.00 1.82
1646 1712 4.142687 CCAATCTACTTCCGTGCGAAATTT 60.143 41.667 0.00 0.00 0.00 1.82
1647 1713 5.390613 CAATCTACTTCCGTGCGAAATTTT 58.609 37.500 0.00 0.00 0.00 1.82
1648 1714 4.398549 TCTACTTCCGTGCGAAATTTTG 57.601 40.909 0.59 0.59 0.00 2.44
1649 1715 3.810941 TCTACTTCCGTGCGAAATTTTGT 59.189 39.130 7.27 0.00 0.00 2.83
1650 1716 2.726633 ACTTCCGTGCGAAATTTTGTG 58.273 42.857 7.27 0.00 0.00 3.33
1651 1717 2.356382 ACTTCCGTGCGAAATTTTGTGA 59.644 40.909 7.27 0.00 0.00 3.58
1652 1718 3.181495 ACTTCCGTGCGAAATTTTGTGAA 60.181 39.130 7.27 4.98 0.00 3.18
1653 1719 3.422417 TCCGTGCGAAATTTTGTGAAA 57.578 38.095 7.27 0.00 0.00 2.69
1654 1720 3.770666 TCCGTGCGAAATTTTGTGAAAA 58.229 36.364 7.27 0.00 34.41 2.29
1655 1721 4.174009 TCCGTGCGAAATTTTGTGAAAAA 58.826 34.783 7.27 0.00 33.47 1.94
1674 1740 4.608948 AAAATACCCAAAAACGCATCCA 57.391 36.364 0.00 0.00 0.00 3.41
1675 1741 4.817318 AAATACCCAAAAACGCATCCAT 57.183 36.364 0.00 0.00 0.00 3.41
1676 1742 3.799281 ATACCCAAAAACGCATCCATG 57.201 42.857 0.00 0.00 0.00 3.66
1677 1743 0.607620 ACCCAAAAACGCATCCATGG 59.392 50.000 4.97 4.97 0.00 3.66
1678 1744 0.740516 CCCAAAAACGCATCCATGGC 60.741 55.000 6.96 0.00 0.00 4.40
1685 1751 4.240881 GCATCCATGGCGAAGGAA 57.759 55.556 6.96 0.00 37.48 3.36
1686 1752 2.724520 GCATCCATGGCGAAGGAAT 58.275 52.632 6.96 0.00 37.48 3.01
1687 1753 1.035139 GCATCCATGGCGAAGGAATT 58.965 50.000 6.96 0.00 37.48 2.17
1688 1754 2.229792 GCATCCATGGCGAAGGAATTA 58.770 47.619 6.96 0.00 37.48 1.40
1689 1755 2.030805 GCATCCATGGCGAAGGAATTAC 60.031 50.000 6.96 0.00 37.48 1.89
1690 1756 3.480470 CATCCATGGCGAAGGAATTACT 58.520 45.455 6.96 0.00 37.48 2.24
1691 1757 2.917933 TCCATGGCGAAGGAATTACTG 58.082 47.619 6.96 0.00 0.00 2.74
1692 1758 1.334869 CCATGGCGAAGGAATTACTGC 59.665 52.381 0.00 0.00 0.00 4.40
1693 1759 1.334869 CATGGCGAAGGAATTACTGCC 59.665 52.381 11.39 11.39 42.76 4.85
1694 1760 0.393808 TGGCGAAGGAATTACTGCCC 60.394 55.000 14.85 6.43 41.77 5.36
1695 1761 1.436983 GGCGAAGGAATTACTGCCCG 61.437 60.000 7.67 5.57 36.51 6.13
1696 1762 1.436983 GCGAAGGAATTACTGCCCGG 61.437 60.000 0.00 0.00 0.00 5.73
1697 1763 0.177141 CGAAGGAATTACTGCCCGGA 59.823 55.000 0.73 0.00 0.00 5.14
1698 1764 1.406341 CGAAGGAATTACTGCCCGGAA 60.406 52.381 0.73 0.00 0.00 4.30
1699 1765 2.718563 GAAGGAATTACTGCCCGGAAA 58.281 47.619 0.73 0.00 0.00 3.13
1700 1766 2.891191 AGGAATTACTGCCCGGAAAA 57.109 45.000 0.73 0.00 0.00 2.29
1701 1767 3.163616 AGGAATTACTGCCCGGAAAAA 57.836 42.857 0.73 0.00 0.00 1.94
1732 1798 8.659569 CACAAACAGTGTTTTGCTATACATAG 57.340 34.615 18.59 5.74 43.40 2.23
1733 1799 8.503196 CACAAACAGTGTTTTGCTATACATAGA 58.497 33.333 18.59 0.00 43.40 1.98
1734 1800 9.062524 ACAAACAGTGTTTTGCTATACATAGAA 57.937 29.630 18.59 0.00 39.67 2.10
1735 1801 9.891828 CAAACAGTGTTTTGCTATACATAGAAA 57.108 29.630 18.59 0.00 32.05 2.52
1765 1831 2.402640 TTTTTGCCGCGAATACGTTT 57.597 40.000 8.23 0.00 41.98 3.60
1766 1832 1.953113 TTTTGCCGCGAATACGTTTC 58.047 45.000 8.23 0.00 41.98 2.78
1767 1833 0.166379 TTTGCCGCGAATACGTTTCC 59.834 50.000 8.23 0.00 41.98 3.13
1768 1834 0.671163 TTGCCGCGAATACGTTTCCT 60.671 50.000 8.23 0.00 41.98 3.36
1769 1835 1.347221 GCCGCGAATACGTTTCCTG 59.653 57.895 8.23 0.00 41.98 3.86
1770 1836 2.003672 CCGCGAATACGTTTCCTGG 58.996 57.895 8.23 0.00 41.98 4.45
1771 1837 0.738412 CCGCGAATACGTTTCCTGGT 60.738 55.000 8.23 0.00 41.98 4.00
1772 1838 1.469595 CCGCGAATACGTTTCCTGGTA 60.470 52.381 8.23 0.00 41.98 3.25
1773 1839 2.466846 CGCGAATACGTTTCCTGGTAT 58.533 47.619 0.00 0.00 41.98 2.73
1774 1840 2.861935 CGCGAATACGTTTCCTGGTATT 59.138 45.455 0.00 0.00 40.89 1.89
1775 1841 3.307782 CGCGAATACGTTTCCTGGTATTT 59.692 43.478 0.00 0.00 38.93 1.40
1776 1842 4.201744 CGCGAATACGTTTCCTGGTATTTT 60.202 41.667 0.00 0.00 38.93 1.82
1777 1843 5.633927 GCGAATACGTTTCCTGGTATTTTT 58.366 37.500 0.00 0.00 38.93 1.94
1796 1862 4.735662 TTTTTCACGAAACCTCATACGG 57.264 40.909 0.00 0.00 0.00 4.02
1797 1863 2.373540 TTCACGAAACCTCATACGGG 57.626 50.000 0.00 0.00 0.00 5.28
1798 1864 1.548081 TCACGAAACCTCATACGGGA 58.452 50.000 0.00 0.00 35.84 5.14
1799 1865 1.894466 TCACGAAACCTCATACGGGAA 59.106 47.619 0.00 0.00 35.29 3.97
1800 1866 2.498481 TCACGAAACCTCATACGGGAAT 59.502 45.455 0.00 0.00 35.29 3.01
1801 1867 3.700539 TCACGAAACCTCATACGGGAATA 59.299 43.478 0.00 0.00 35.29 1.75
1802 1868 3.800506 CACGAAACCTCATACGGGAATAC 59.199 47.826 0.00 0.00 0.00 1.89
1803 1869 3.448301 ACGAAACCTCATACGGGAATACA 59.552 43.478 0.00 0.00 0.00 2.29
1804 1870 4.100498 ACGAAACCTCATACGGGAATACAT 59.900 41.667 0.00 0.00 0.00 2.29
1805 1871 4.684703 CGAAACCTCATACGGGAATACATC 59.315 45.833 0.00 0.00 0.00 3.06
1806 1872 3.936372 ACCTCATACGGGAATACATCG 57.064 47.619 0.00 0.00 0.00 3.84
1807 1873 2.561419 ACCTCATACGGGAATACATCGG 59.439 50.000 0.00 0.00 0.00 4.18
1808 1874 2.561419 CCTCATACGGGAATACATCGGT 59.439 50.000 0.00 0.00 0.00 4.69
1809 1875 3.760151 CCTCATACGGGAATACATCGGTA 59.240 47.826 0.00 0.00 0.00 4.02
1810 1876 4.219070 CCTCATACGGGAATACATCGGTAA 59.781 45.833 0.00 0.00 32.19 2.85
1811 1877 5.125100 TCATACGGGAATACATCGGTAAC 57.875 43.478 0.00 0.00 32.19 2.50
1812 1878 2.896745 ACGGGAATACATCGGTAACC 57.103 50.000 0.00 0.00 32.19 2.85
1813 1879 1.413812 ACGGGAATACATCGGTAACCC 59.586 52.381 0.00 0.00 42.08 4.11
1814 1880 1.413445 CGGGAATACATCGGTAACCCA 59.587 52.381 15.48 0.00 43.89 4.51
1815 1881 2.804212 CGGGAATACATCGGTAACCCAC 60.804 54.545 15.48 0.00 43.89 4.61
1816 1882 2.476821 GGAATACATCGGTAACCCACG 58.523 52.381 0.00 0.00 32.19 4.94
1817 1883 2.159057 GGAATACATCGGTAACCCACGT 60.159 50.000 0.00 0.00 32.19 4.49
1818 1884 3.524541 GAATACATCGGTAACCCACGTT 58.475 45.455 0.00 0.00 35.90 3.99
1819 1885 3.615224 ATACATCGGTAACCCACGTTT 57.385 42.857 0.00 0.00 33.17 3.60
1820 1886 1.515081 ACATCGGTAACCCACGTTTG 58.485 50.000 0.00 0.00 33.17 2.93
1821 1887 1.070445 ACATCGGTAACCCACGTTTGA 59.930 47.619 0.00 0.00 33.17 2.69
1822 1888 2.289819 ACATCGGTAACCCACGTTTGAT 60.290 45.455 0.00 0.00 33.17 2.57
1823 1889 3.055963 ACATCGGTAACCCACGTTTGATA 60.056 43.478 0.00 0.00 33.17 2.15
1824 1890 3.891422 TCGGTAACCCACGTTTGATAT 57.109 42.857 0.00 0.00 33.17 1.63
1825 1891 4.205065 TCGGTAACCCACGTTTGATATT 57.795 40.909 0.00 0.00 33.17 1.28
1826 1892 4.183101 TCGGTAACCCACGTTTGATATTC 58.817 43.478 0.00 0.00 33.17 1.75
1827 1893 3.310501 CGGTAACCCACGTTTGATATTCC 59.689 47.826 0.00 0.00 33.17 3.01
1828 1894 4.263435 GGTAACCCACGTTTGATATTCCA 58.737 43.478 0.00 0.00 33.17 3.53
1829 1895 4.701171 GGTAACCCACGTTTGATATTCCAA 59.299 41.667 0.00 0.00 33.17 3.53
1830 1896 5.183522 GGTAACCCACGTTTGATATTCCAAA 59.816 40.000 0.00 0.00 34.03 3.28
1831 1897 5.793030 AACCCACGTTTGATATTCCAAAA 57.207 34.783 0.00 0.00 37.72 2.44
1832 1898 5.128992 ACCCACGTTTGATATTCCAAAAC 57.871 39.130 0.00 0.00 37.72 2.43
1833 1899 4.021807 ACCCACGTTTGATATTCCAAAACC 60.022 41.667 0.00 0.00 37.72 3.27
1834 1900 4.490743 CCACGTTTGATATTCCAAAACCC 58.509 43.478 0.00 0.00 37.72 4.11
1835 1901 4.490743 CACGTTTGATATTCCAAAACCCC 58.509 43.478 0.00 0.00 37.72 4.95
1836 1902 4.021894 CACGTTTGATATTCCAAAACCCCA 60.022 41.667 0.00 0.00 37.72 4.96
1837 1903 4.219725 ACGTTTGATATTCCAAAACCCCAG 59.780 41.667 0.00 0.00 37.72 4.45
1838 1904 4.461081 CGTTTGATATTCCAAAACCCCAGA 59.539 41.667 0.00 0.00 37.72 3.86
1839 1905 5.127031 CGTTTGATATTCCAAAACCCCAGAT 59.873 40.000 0.00 0.00 37.72 2.90
1840 1906 6.350949 CGTTTGATATTCCAAAACCCCAGATT 60.351 38.462 0.00 0.00 37.72 2.40
1841 1907 7.394016 GTTTGATATTCCAAAACCCCAGATTT 58.606 34.615 0.00 0.00 37.72 2.17
1842 1908 7.566658 TTGATATTCCAAAACCCCAGATTTT 57.433 32.000 0.00 0.00 0.00 1.82
1843 1909 7.566658 TGATATTCCAAAACCCCAGATTTTT 57.433 32.000 0.00 0.00 0.00 1.94
1890 1956 6.945636 TTCCTGGTATTGTACATATAGGGG 57.054 41.667 0.00 0.00 0.00 4.79
1891 1957 5.984827 TCCTGGTATTGTACATATAGGGGT 58.015 41.667 0.00 0.00 0.00 4.95
1892 1958 5.783360 TCCTGGTATTGTACATATAGGGGTG 59.217 44.000 0.00 0.00 0.00 4.61
1893 1959 5.488341 CTGGTATTGTACATATAGGGGTGC 58.512 45.833 0.00 0.00 0.00 5.01
1894 1960 4.020928 TGGTATTGTACATATAGGGGTGCG 60.021 45.833 0.00 0.00 0.00 5.34
1895 1961 3.695830 ATTGTACATATAGGGGTGCGG 57.304 47.619 0.00 0.00 0.00 5.69
1896 1962 2.385135 TGTACATATAGGGGTGCGGA 57.615 50.000 0.00 0.00 0.00 5.54
1897 1963 2.244695 TGTACATATAGGGGTGCGGAG 58.755 52.381 0.00 0.00 0.00 4.63
1913 1979 4.766272 AGCACCCGAGAGCTCTAA 57.234 55.556 18.25 0.00 34.53 2.10
1914 1980 3.215671 AGCACCCGAGAGCTCTAAT 57.784 52.632 18.25 0.00 34.53 1.73
1915 1981 1.036707 AGCACCCGAGAGCTCTAATC 58.963 55.000 18.25 3.51 34.53 1.75
1916 1982 0.032815 GCACCCGAGAGCTCTAATCC 59.967 60.000 18.25 2.78 0.00 3.01
1917 1983 1.698506 CACCCGAGAGCTCTAATCCT 58.301 55.000 18.25 0.00 0.00 3.24
1918 1984 1.611491 CACCCGAGAGCTCTAATCCTC 59.389 57.143 18.25 1.86 0.00 3.71
1919 1985 0.878416 CCCGAGAGCTCTAATCCTCG 59.122 60.000 18.25 14.75 45.54 4.63
1920 1986 1.600023 CCGAGAGCTCTAATCCTCGT 58.400 55.000 18.25 0.00 44.79 4.18
1921 1987 1.533731 CCGAGAGCTCTAATCCTCGTC 59.466 57.143 18.25 0.00 44.79 4.20
1922 1988 1.533731 CGAGAGCTCTAATCCTCGTCC 59.466 57.143 18.25 0.00 42.29 4.79
1923 1989 1.533731 GAGAGCTCTAATCCTCGTCCG 59.466 57.143 18.25 0.00 33.39 4.79
1924 1990 0.594110 GAGCTCTAATCCTCGTCCGG 59.406 60.000 6.43 0.00 0.00 5.14
1925 1991 0.106619 AGCTCTAATCCTCGTCCGGT 60.107 55.000 0.00 0.00 0.00 5.28
1926 1992 1.142465 AGCTCTAATCCTCGTCCGGTA 59.858 52.381 0.00 0.00 0.00 4.02
1927 1993 1.266446 GCTCTAATCCTCGTCCGGTAC 59.734 57.143 0.00 0.00 0.00 3.34
1950 2016 7.303634 ACGTCTCGCACTAATTTGAATTTAT 57.696 32.000 0.00 0.00 0.00 1.40
1951 2017 8.415192 ACGTCTCGCACTAATTTGAATTTATA 57.585 30.769 0.00 0.00 0.00 0.98
2126 2228 1.484653 GAAAGCCCCAAACAACCAAGT 59.515 47.619 0.00 0.00 0.00 3.16
2296 2988 5.585844 TCATATACCGAGTGAGAACAACGTA 59.414 40.000 0.00 0.00 0.00 3.57
2356 3048 2.884012 GCCAATTTTTGACCCAAAAGGG 59.116 45.455 0.00 0.00 42.91 3.95
2687 3386 7.118390 AGACAGTAAGAAGATGTAAACATGTGC 59.882 37.037 0.00 0.00 36.57 4.57
2861 3561 2.174764 CAGATCGACGGTGAACTAACG 58.825 52.381 0.00 0.00 0.00 3.18
3044 4394 6.931840 GTGAATGGAGAAGAGGTAATATCACC 59.068 42.308 0.00 0.00 39.02 4.02
3045 4395 6.615316 TGAATGGAGAAGAGGTAATATCACCA 59.385 38.462 0.00 0.00 41.40 4.17
3139 4489 6.975772 TCTAACTTGTTGTTTGGTGCAAATAC 59.024 34.615 0.00 0.00 39.89 1.89
3144 4494 3.802948 TGTTTGGTGCAAATACGGTTT 57.197 38.095 0.00 0.00 35.74 3.27
3171 4521 0.597568 CTGTAACCGGACGTACACCA 59.402 55.000 9.46 0.00 0.00 4.17
3276 4652 0.962489 CGAGACCCACTTGTCAGTCT 59.038 55.000 0.00 0.00 42.15 3.24
3303 4692 5.545723 CAGTATTGAGGAATGATAGGAGGGT 59.454 44.000 0.00 0.00 0.00 4.34
3331 4720 3.756082 TTGAATGCCCTACCTTCCAAT 57.244 42.857 0.00 0.00 0.00 3.16
3430 4821 0.394488 TGGAGCTCCTGAGTCTACCG 60.394 60.000 32.28 0.00 36.82 4.02
3440 4831 2.166459 CTGAGTCTACCGGCTCAAATGA 59.834 50.000 0.00 0.00 40.68 2.57
3708 5107 2.104111 ACGATCAAAGACACCCTTCACA 59.896 45.455 0.00 0.00 33.02 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.106890 TGTCGATATCTCCAACAAACCAATTA 58.893 34.615 0.34 0.00 0.00 1.40
3 4 5.496556 TGTCGATATCTCCAACAAACCAAT 58.503 37.500 0.34 0.00 0.00 3.16
4 5 4.900684 TGTCGATATCTCCAACAAACCAA 58.099 39.130 0.34 0.00 0.00 3.67
5 6 4.545208 TGTCGATATCTCCAACAAACCA 57.455 40.909 0.34 0.00 0.00 3.67
7 8 6.314784 CCTTTTGTCGATATCTCCAACAAAC 58.685 40.000 15.88 0.00 38.97 2.93
8 9 5.106317 GCCTTTTGTCGATATCTCCAACAAA 60.106 40.000 13.79 13.79 37.87 2.83
9 10 4.394920 GCCTTTTGTCGATATCTCCAACAA 59.605 41.667 0.34 3.90 0.00 2.83
10 11 3.938963 GCCTTTTGTCGATATCTCCAACA 59.061 43.478 0.34 0.00 0.00 3.33
11 12 3.312697 GGCCTTTTGTCGATATCTCCAAC 59.687 47.826 0.00 0.00 0.00 3.77
12 13 3.199946 AGGCCTTTTGTCGATATCTCCAA 59.800 43.478 0.00 0.80 0.00 3.53
13 14 2.771943 AGGCCTTTTGTCGATATCTCCA 59.228 45.455 0.00 0.00 0.00 3.86
14 15 3.134458 CAGGCCTTTTGTCGATATCTCC 58.866 50.000 0.00 0.00 0.00 3.71
15 16 3.134458 CCAGGCCTTTTGTCGATATCTC 58.866 50.000 0.00 0.00 0.00 2.75
16 17 2.505819 ACCAGGCCTTTTGTCGATATCT 59.494 45.455 0.00 0.00 0.00 1.98
17 18 2.919228 ACCAGGCCTTTTGTCGATATC 58.081 47.619 0.00 0.00 0.00 1.63
18 19 3.016736 CAACCAGGCCTTTTGTCGATAT 58.983 45.455 0.00 0.00 0.00 1.63
19 20 2.432444 CAACCAGGCCTTTTGTCGATA 58.568 47.619 0.00 0.00 0.00 2.92
20 21 1.247567 CAACCAGGCCTTTTGTCGAT 58.752 50.000 0.00 0.00 0.00 3.59
21 22 1.452145 GCAACCAGGCCTTTTGTCGA 61.452 55.000 20.38 0.00 0.00 4.20
22 23 1.007387 GCAACCAGGCCTTTTGTCG 60.007 57.895 20.38 3.59 0.00 4.35
23 24 0.249447 GTGCAACCAGGCCTTTTGTC 60.249 55.000 20.38 14.60 0.00 3.18
24 25 0.687427 AGTGCAACCAGGCCTTTTGT 60.687 50.000 20.38 9.16 37.80 2.83
25 26 0.249573 CAGTGCAACCAGGCCTTTTG 60.250 55.000 16.70 16.70 37.80 2.44
26 27 2.031674 GCAGTGCAACCAGGCCTTTT 62.032 55.000 11.09 0.00 37.80 2.27
27 28 2.501602 GCAGTGCAACCAGGCCTTT 61.502 57.895 11.09 0.00 37.80 3.11
28 29 2.914097 GCAGTGCAACCAGGCCTT 60.914 61.111 11.09 0.00 37.80 4.35
29 30 3.518552 ATGCAGTGCAACCAGGCCT 62.519 57.895 23.90 0.00 43.62 5.19
30 31 2.993264 ATGCAGTGCAACCAGGCC 60.993 61.111 23.90 0.00 43.62 5.19
31 32 1.975407 AGATGCAGTGCAACCAGGC 60.975 57.895 23.90 7.54 43.62 4.85
32 33 0.607217 TCAGATGCAGTGCAACCAGG 60.607 55.000 23.90 11.97 43.62 4.45
33 34 0.803117 CTCAGATGCAGTGCAACCAG 59.197 55.000 23.90 14.83 43.62 4.00
34 35 1.239296 GCTCAGATGCAGTGCAACCA 61.239 55.000 23.90 8.14 43.62 3.67
35 36 0.959372 AGCTCAGATGCAGTGCAACC 60.959 55.000 23.90 16.71 43.62 3.77
36 37 0.879765 AAGCTCAGATGCAGTGCAAC 59.120 50.000 23.90 20.18 43.62 4.17
37 38 2.289882 ACTAAGCTCAGATGCAGTGCAA 60.290 45.455 23.90 4.21 43.62 4.08
38 39 1.277273 ACTAAGCTCAGATGCAGTGCA 59.723 47.619 22.22 22.22 44.86 4.57
39 40 2.021355 ACTAAGCTCAGATGCAGTGC 57.979 50.000 8.58 8.58 34.99 4.40
40 41 3.373439 GGAAACTAAGCTCAGATGCAGTG 59.627 47.826 0.00 0.00 34.99 3.66
41 42 3.008375 TGGAAACTAAGCTCAGATGCAGT 59.992 43.478 0.00 0.00 34.99 4.40
42 43 3.603532 TGGAAACTAAGCTCAGATGCAG 58.396 45.455 0.00 0.00 34.99 4.41
43 44 3.701205 TGGAAACTAAGCTCAGATGCA 57.299 42.857 0.00 0.00 34.99 3.96
44 45 6.051717 TCTTATGGAAACTAAGCTCAGATGC 58.948 40.000 0.00 0.00 0.00 3.91
45 46 7.307870 GCATCTTATGGAAACTAAGCTCAGATG 60.308 40.741 0.00 0.00 0.00 2.90
46 47 6.709846 GCATCTTATGGAAACTAAGCTCAGAT 59.290 38.462 0.00 0.00 0.00 2.90
47 48 6.051717 GCATCTTATGGAAACTAAGCTCAGA 58.948 40.000 0.00 0.00 0.00 3.27
48 49 5.819379 TGCATCTTATGGAAACTAAGCTCAG 59.181 40.000 0.00 0.00 0.00 3.35
49 50 5.744171 TGCATCTTATGGAAACTAAGCTCA 58.256 37.500 0.00 0.00 0.00 4.26
50 51 6.051717 TCTGCATCTTATGGAAACTAAGCTC 58.948 40.000 0.00 0.00 0.00 4.09
51 52 5.994250 TCTGCATCTTATGGAAACTAAGCT 58.006 37.500 0.00 0.00 0.00 3.74
52 53 5.819901 ACTCTGCATCTTATGGAAACTAAGC 59.180 40.000 0.00 0.00 0.00 3.09
53 54 7.201679 CCAACTCTGCATCTTATGGAAACTAAG 60.202 40.741 0.00 0.00 0.00 2.18
54 55 6.599244 CCAACTCTGCATCTTATGGAAACTAA 59.401 38.462 0.00 0.00 0.00 2.24
55 56 6.070251 TCCAACTCTGCATCTTATGGAAACTA 60.070 38.462 6.06 0.00 32.84 2.24
56 57 4.946157 CCAACTCTGCATCTTATGGAAACT 59.054 41.667 0.00 0.00 0.00 2.66
57 58 4.943705 TCCAACTCTGCATCTTATGGAAAC 59.056 41.667 6.06 0.00 32.84 2.78
58 59 5.178096 TCCAACTCTGCATCTTATGGAAA 57.822 39.130 6.06 0.00 32.84 3.13
59 60 4.842531 TCCAACTCTGCATCTTATGGAA 57.157 40.909 6.06 0.00 32.84 3.53
60 61 5.604231 AGTATCCAACTCTGCATCTTATGGA 59.396 40.000 9.82 9.82 39.59 3.41
61 62 5.862845 AGTATCCAACTCTGCATCTTATGG 58.137 41.667 0.00 0.00 30.33 2.74
62 63 6.765036 ACAAGTATCCAACTCTGCATCTTATG 59.235 38.462 0.00 0.00 37.50 1.90
63 64 6.893583 ACAAGTATCCAACTCTGCATCTTAT 58.106 36.000 0.00 0.00 37.50 1.73
64 65 6.070824 TGACAAGTATCCAACTCTGCATCTTA 60.071 38.462 0.00 0.00 37.50 2.10
65 66 5.171339 ACAAGTATCCAACTCTGCATCTT 57.829 39.130 0.00 0.00 37.50 2.40
66 67 4.223700 TGACAAGTATCCAACTCTGCATCT 59.776 41.667 0.00 0.00 37.50 2.90
67 68 4.331168 GTGACAAGTATCCAACTCTGCATC 59.669 45.833 0.00 0.00 37.50 3.91
68 69 4.019860 AGTGACAAGTATCCAACTCTGCAT 60.020 41.667 0.00 0.00 37.50 3.96
69 70 3.324846 AGTGACAAGTATCCAACTCTGCA 59.675 43.478 0.00 0.00 37.50 4.41
70 71 3.929610 GAGTGACAAGTATCCAACTCTGC 59.070 47.826 0.00 0.00 37.50 4.26
71 72 4.082733 TCGAGTGACAAGTATCCAACTCTG 60.083 45.833 0.00 0.00 37.50 3.35
72 73 4.079970 TCGAGTGACAAGTATCCAACTCT 58.920 43.478 0.00 0.00 37.50 3.24
73 74 4.416620 CTCGAGTGACAAGTATCCAACTC 58.583 47.826 3.62 0.00 37.50 3.01
74 75 3.193691 CCTCGAGTGACAAGTATCCAACT 59.806 47.826 12.31 0.00 41.49 3.16
75 76 3.512680 CCTCGAGTGACAAGTATCCAAC 58.487 50.000 12.31 0.00 0.00 3.77
76 77 2.094182 GCCTCGAGTGACAAGTATCCAA 60.094 50.000 12.31 0.00 0.00 3.53
77 78 1.476891 GCCTCGAGTGACAAGTATCCA 59.523 52.381 12.31 0.00 0.00 3.41
78 79 1.534175 CGCCTCGAGTGACAAGTATCC 60.534 57.143 12.31 0.00 0.00 2.59
79 80 1.534175 CCGCCTCGAGTGACAAGTATC 60.534 57.143 12.31 0.00 0.00 2.24
80 81 0.456221 CCGCCTCGAGTGACAAGTAT 59.544 55.000 12.31 0.00 0.00 2.12
81 82 1.592400 CCCGCCTCGAGTGACAAGTA 61.592 60.000 12.31 0.00 0.00 2.24
82 83 2.651361 CCGCCTCGAGTGACAAGT 59.349 61.111 12.31 0.00 0.00 3.16
83 84 1.592400 TACCCGCCTCGAGTGACAAG 61.592 60.000 12.31 0.00 0.00 3.16
84 85 1.592400 CTACCCGCCTCGAGTGACAA 61.592 60.000 12.31 0.00 0.00 3.18
85 86 2.034532 TACCCGCCTCGAGTGACA 59.965 61.111 12.31 0.00 0.00 3.58
86 87 2.772691 CCTACCCGCCTCGAGTGAC 61.773 68.421 12.31 0.00 0.00 3.67
87 88 2.439701 CCTACCCGCCTCGAGTGA 60.440 66.667 12.31 0.00 0.00 3.41
88 89 2.754658 ACCTACCCGCCTCGAGTG 60.755 66.667 12.31 4.07 0.00 3.51
89 90 2.754658 CACCTACCCGCCTCGAGT 60.755 66.667 12.31 0.00 0.00 4.18
90 91 4.208686 GCACCTACCCGCCTCGAG 62.209 72.222 5.13 5.13 0.00 4.04
91 92 2.842188 TTAGCACCTACCCGCCTCGA 62.842 60.000 0.00 0.00 0.00 4.04
92 93 1.952102 TTTAGCACCTACCCGCCTCG 61.952 60.000 0.00 0.00 0.00 4.63
93 94 0.251073 TTTTAGCACCTACCCGCCTC 59.749 55.000 0.00 0.00 0.00 4.70
94 95 0.916809 ATTTTAGCACCTACCCGCCT 59.083 50.000 0.00 0.00 0.00 5.52
95 96 2.615447 GTTATTTTAGCACCTACCCGCC 59.385 50.000 0.00 0.00 0.00 6.13
96 97 2.615447 GGTTATTTTAGCACCTACCCGC 59.385 50.000 0.00 0.00 0.00 6.13
97 98 4.146745 AGGTTATTTTAGCACCTACCCG 57.853 45.455 0.00 0.00 39.28 5.28
98 99 4.097437 GCAAGGTTATTTTAGCACCTACCC 59.903 45.833 0.00 0.00 40.23 3.69
99 100 4.703093 TGCAAGGTTATTTTAGCACCTACC 59.297 41.667 0.00 0.00 40.23 3.18
100 101 5.890424 TGCAAGGTTATTTTAGCACCTAC 57.110 39.130 0.00 0.00 40.23 3.18
101 102 8.463607 GTTAATGCAAGGTTATTTTAGCACCTA 58.536 33.333 0.00 0.00 40.23 3.08
102 103 7.178451 AGTTAATGCAAGGTTATTTTAGCACCT 59.822 33.333 0.00 0.00 43.17 4.00
103 104 7.320399 AGTTAATGCAAGGTTATTTTAGCACC 58.680 34.615 0.00 0.00 34.54 5.01
104 105 9.849166 TTAGTTAATGCAAGGTTATTTTAGCAC 57.151 29.630 0.00 0.00 34.54 4.40
146 147 6.383436 TCATCAGAGACAATCAGAGAAGGATT 59.617 38.462 0.00 0.00 35.43 3.01
147 148 5.898397 TCATCAGAGACAATCAGAGAAGGAT 59.102 40.000 0.00 0.00 0.00 3.24
153 154 3.982701 GCGATCATCAGAGACAATCAGAG 59.017 47.826 0.00 0.00 0.00 3.35
163 164 2.591571 TGAAGTGGCGATCATCAGAG 57.408 50.000 0.00 0.00 0.00 3.35
179 180 7.864108 AATTAATGACATCCGAAGTGATGAA 57.136 32.000 7.93 0.00 43.94 2.57
235 236 1.550524 TGGTCTATGCACTCAGGTGAC 59.449 52.381 0.00 0.00 45.61 3.67
241 242 5.483685 AGTTAAACTGGTCTATGCACTCA 57.516 39.130 0.00 0.00 0.00 3.41
340 351 4.158025 TGGTTCTCCTCTGATAAGAACGAC 59.842 45.833 18.35 10.96 46.29 4.34
342 353 4.720649 TGGTTCTCCTCTGATAAGAACG 57.279 45.455 18.35 0.00 46.29 3.95
361 372 6.128391 CCATGCATGAACTTTTCTGATTTTGG 60.128 38.462 28.31 1.78 0.00 3.28
483 511 1.153549 GTGGCCAGGACAGACGATC 60.154 63.158 5.11 0.00 0.00 3.69
511 539 0.657840 CCCGGCGATTGAACTTCATC 59.342 55.000 9.30 0.00 0.00 2.92
527 555 1.378778 TTTATTGTTCCCCGCCCCG 60.379 57.895 0.00 0.00 0.00 5.73
528 556 0.612453 TGTTTATTGTTCCCCGCCCC 60.612 55.000 0.00 0.00 0.00 5.80
529 557 1.480789 ATGTTTATTGTTCCCCGCCC 58.519 50.000 0.00 0.00 0.00 6.13
530 558 3.056465 TCAAATGTTTATTGTTCCCCGCC 60.056 43.478 0.00 0.00 0.00 6.13
531 559 4.082463 TCTCAAATGTTTATTGTTCCCCGC 60.082 41.667 0.00 0.00 0.00 6.13
653 691 5.475564 TCATTTCCAACCTAGCTTTGTAACC 59.524 40.000 0.00 0.00 0.00 2.85
732 771 0.101219 GGTTTCGGAAGCCATGATGC 59.899 55.000 17.51 0.00 0.00 3.91
742 781 1.595929 GGCACGACAGGTTTCGGAA 60.596 57.895 0.00 0.00 43.58 4.30
746 785 1.228154 AAGGGGCACGACAGGTTTC 60.228 57.895 0.00 0.00 0.00 2.78
747 786 1.228154 GAAGGGGCACGACAGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
772 811 1.452145 GCACGGAAAAGTCAAGCCCA 61.452 55.000 0.00 0.00 0.00 5.36
811 855 2.787249 GCGACCTCTACGTGCGTA 59.213 61.111 0.00 4.35 0.00 4.42
838 882 0.179067 CGGTTTTATAGCGCCCTCCA 60.179 55.000 2.29 0.00 41.26 3.86
870 914 1.602605 TGGAGACGACGAGAAGCCA 60.603 57.895 0.00 0.00 0.00 4.75
879 923 1.135333 GGAAGGATCAGTGGAGACGAC 59.865 57.143 0.00 0.00 0.00 4.34
883 927 1.362584 TCCAGGAAGGATCAGTGGAGA 59.637 52.381 0.00 0.00 43.07 3.71
896 940 3.760035 GCGGTCGAGCTCCAGGAA 61.760 66.667 13.48 0.00 0.00 3.36
931 984 0.251519 AAAGCAGCAAAGAGGGGGAG 60.252 55.000 0.00 0.00 0.00 4.30
1203 1269 3.432051 CTCATCCGACGCCACCTCC 62.432 68.421 0.00 0.00 0.00 4.30
1240 1306 3.246535 ACCACCTCCTCTTCCTTATCCTT 60.247 47.826 0.00 0.00 0.00 3.36
1317 1383 1.302033 CTTCACAGGAGGTTGCGCT 60.302 57.895 9.73 0.00 0.00 5.92
1330 1396 2.896443 CTCGCCCTCCTCCTTCAC 59.104 66.667 0.00 0.00 0.00 3.18
1358 1424 1.221840 GCCTCATCGGACATGGTGT 59.778 57.895 0.00 0.00 33.16 4.16
1434 1500 0.400594 CGGGTTTGGTCTCCTCCTTT 59.599 55.000 0.00 0.00 0.00 3.11
1448 1514 0.905337 CTCCTTGGTCTCCTCGGGTT 60.905 60.000 0.00 0.00 0.00 4.11
1507 1573 2.832129 AGCTCCTGTGTATTTTCCGAGA 59.168 45.455 0.00 0.00 0.00 4.04
1508 1574 3.118956 AGAGCTCCTGTGTATTTTCCGAG 60.119 47.826 10.93 0.00 0.00 4.63
1509 1575 2.832129 AGAGCTCCTGTGTATTTTCCGA 59.168 45.455 10.93 0.00 0.00 4.55
1510 1576 3.190874 GAGAGCTCCTGTGTATTTTCCG 58.809 50.000 10.93 0.00 0.00 4.30
1511 1577 3.190874 CGAGAGCTCCTGTGTATTTTCC 58.809 50.000 10.93 0.00 0.00 3.13
1512 1578 3.190874 CCGAGAGCTCCTGTGTATTTTC 58.809 50.000 10.93 0.00 0.00 2.29
1513 1579 2.093447 CCCGAGAGCTCCTGTGTATTTT 60.093 50.000 10.93 0.00 0.00 1.82
1514 1580 1.482593 CCCGAGAGCTCCTGTGTATTT 59.517 52.381 10.93 0.00 0.00 1.40
1515 1581 1.115467 CCCGAGAGCTCCTGTGTATT 58.885 55.000 10.93 0.00 0.00 1.89
1516 1582 0.033011 ACCCGAGAGCTCCTGTGTAT 60.033 55.000 10.93 0.00 0.00 2.29
1517 1583 0.965866 CACCCGAGAGCTCCTGTGTA 60.966 60.000 10.93 0.00 0.00 2.90
1518 1584 2.118513 ACCCGAGAGCTCCTGTGT 59.881 61.111 10.93 0.00 0.00 3.72
1519 1585 2.575993 CACCCGAGAGCTCCTGTG 59.424 66.667 10.93 8.97 0.00 3.66
1520 1586 3.386237 GCACCCGAGAGCTCCTGT 61.386 66.667 10.93 0.00 0.00 4.00
1521 1587 3.073735 AGCACCCGAGAGCTCCTG 61.074 66.667 10.93 2.57 34.53 3.86
1525 1591 3.386237 GTGGAGCACCCGAGAGCT 61.386 66.667 0.00 0.00 43.17 4.09
1526 1592 3.695606 TGTGGAGCACCCGAGAGC 61.696 66.667 0.00 0.00 37.93 4.09
1527 1593 2.262915 GTGTGGAGCACCCGAGAG 59.737 66.667 0.00 0.00 42.10 3.20
1534 1600 0.104304 CGTATAGGGGTGTGGAGCAC 59.896 60.000 0.00 0.00 46.97 4.40
1535 1601 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.000 0.00 0.00 0.00 4.26
1536 1602 1.117150 TTCGTATAGGGGTGTGGAGC 58.883 55.000 0.00 0.00 0.00 4.70
1537 1603 3.899052 TTTTCGTATAGGGGTGTGGAG 57.101 47.619 0.00 0.00 0.00 3.86
1538 1604 4.847990 ATTTTTCGTATAGGGGTGTGGA 57.152 40.909 0.00 0.00 0.00 4.02
1539 1605 6.073440 CGAATATTTTTCGTATAGGGGTGTGG 60.073 42.308 1.66 0.00 37.18 4.17
1540 1606 6.884187 CGAATATTTTTCGTATAGGGGTGTG 58.116 40.000 1.66 0.00 37.18 3.82
1586 1652 7.947282 TGACATCCCGAAAATTTAGACTTTTT 58.053 30.769 0.00 0.00 0.00 1.94
1587 1653 7.519032 TGACATCCCGAAAATTTAGACTTTT 57.481 32.000 0.00 0.00 0.00 2.27
1588 1654 7.519032 TTGACATCCCGAAAATTTAGACTTT 57.481 32.000 0.00 0.00 0.00 2.66
1589 1655 7.368059 GTTTGACATCCCGAAAATTTAGACTT 58.632 34.615 0.00 0.00 0.00 3.01
1590 1656 6.072119 GGTTTGACATCCCGAAAATTTAGACT 60.072 38.462 0.00 0.00 0.00 3.24
1591 1657 6.072119 AGGTTTGACATCCCGAAAATTTAGAC 60.072 38.462 0.00 0.00 0.00 2.59
1592 1658 6.007703 AGGTTTGACATCCCGAAAATTTAGA 58.992 36.000 0.00 0.00 0.00 2.10
1593 1659 6.092748 CAGGTTTGACATCCCGAAAATTTAG 58.907 40.000 0.00 0.00 0.00 1.85
1594 1660 5.047660 CCAGGTTTGACATCCCGAAAATTTA 60.048 40.000 0.00 0.00 0.00 1.40
1595 1661 4.262420 CCAGGTTTGACATCCCGAAAATTT 60.262 41.667 0.00 0.00 0.00 1.82
1596 1662 3.258123 CCAGGTTTGACATCCCGAAAATT 59.742 43.478 0.00 0.00 0.00 1.82
1597 1663 2.825532 CCAGGTTTGACATCCCGAAAAT 59.174 45.455 0.00 0.00 0.00 1.82
1598 1664 2.235016 CCAGGTTTGACATCCCGAAAA 58.765 47.619 0.00 0.00 0.00 2.29
1599 1665 1.144093 ACCAGGTTTGACATCCCGAAA 59.856 47.619 0.00 0.00 0.00 3.46
1600 1666 0.768622 ACCAGGTTTGACATCCCGAA 59.231 50.000 0.00 0.00 0.00 4.30
1601 1667 0.323629 GACCAGGTTTGACATCCCGA 59.676 55.000 0.00 0.00 0.00 5.14
1602 1668 0.676782 GGACCAGGTTTGACATCCCG 60.677 60.000 0.00 0.00 0.00 5.14
1603 1669 0.323451 GGGACCAGGTTTGACATCCC 60.323 60.000 0.00 0.00 39.16 3.85
1604 1670 3.266240 GGGACCAGGTTTGACATCC 57.734 57.895 0.00 0.00 0.00 3.51
1618 1684 1.201424 ACGGAAGTAGATTGGGGGAC 58.799 55.000 0.00 0.00 46.88 4.46
1619 1685 3.724001 ACGGAAGTAGATTGGGGGA 57.276 52.632 0.00 0.00 46.88 4.81
1631 1697 2.993545 TCACAAAATTTCGCACGGAAG 58.006 42.857 0.00 0.00 35.70 3.46
1632 1698 3.422417 TTCACAAAATTTCGCACGGAA 57.578 38.095 0.00 0.00 0.00 4.30
1633 1699 3.422417 TTTCACAAAATTTCGCACGGA 57.578 38.095 0.00 0.00 0.00 4.69
1634 1700 4.506838 TTTTTCACAAAATTTCGCACGG 57.493 36.364 0.00 0.00 0.00 4.94
1652 1718 4.962155 TGGATGCGTTTTTGGGTATTTTT 58.038 34.783 0.00 0.00 0.00 1.94
1653 1719 4.608948 TGGATGCGTTTTTGGGTATTTT 57.391 36.364 0.00 0.00 0.00 1.82
1654 1720 4.502962 CATGGATGCGTTTTTGGGTATTT 58.497 39.130 0.00 0.00 0.00 1.40
1655 1721 3.118811 CCATGGATGCGTTTTTGGGTATT 60.119 43.478 5.56 0.00 0.00 1.89
1656 1722 2.430332 CCATGGATGCGTTTTTGGGTAT 59.570 45.455 5.56 0.00 0.00 2.73
1657 1723 1.821753 CCATGGATGCGTTTTTGGGTA 59.178 47.619 5.56 0.00 0.00 3.69
1658 1724 0.607620 CCATGGATGCGTTTTTGGGT 59.392 50.000 5.56 0.00 0.00 4.51
1659 1725 0.740516 GCCATGGATGCGTTTTTGGG 60.741 55.000 18.40 0.00 0.00 4.12
1660 1726 1.077645 CGCCATGGATGCGTTTTTGG 61.078 55.000 18.40 0.00 46.59 3.28
1661 1727 2.361797 CGCCATGGATGCGTTTTTG 58.638 52.632 18.40 0.00 46.59 2.44
1662 1728 4.887290 CGCCATGGATGCGTTTTT 57.113 50.000 18.40 0.00 46.59 1.94
1668 1734 1.035139 AATTCCTTCGCCATGGATGC 58.965 50.000 18.40 0.00 31.76 3.91
1669 1735 3.251729 CAGTAATTCCTTCGCCATGGATG 59.748 47.826 18.40 7.05 31.76 3.51
1670 1736 3.480470 CAGTAATTCCTTCGCCATGGAT 58.520 45.455 18.40 0.00 31.76 3.41
1671 1737 2.917933 CAGTAATTCCTTCGCCATGGA 58.082 47.619 18.40 0.00 0.00 3.41
1672 1738 1.334869 GCAGTAATTCCTTCGCCATGG 59.665 52.381 7.63 7.63 0.00 3.66
1673 1739 1.334869 GGCAGTAATTCCTTCGCCATG 59.665 52.381 0.00 0.00 39.38 3.66
1674 1740 1.680338 GGCAGTAATTCCTTCGCCAT 58.320 50.000 0.00 0.00 39.38 4.40
1675 1741 0.393808 GGGCAGTAATTCCTTCGCCA 60.394 55.000 0.00 0.00 41.41 5.69
1676 1742 1.436983 CGGGCAGTAATTCCTTCGCC 61.437 60.000 0.00 0.00 38.85 5.54
1677 1743 1.436983 CCGGGCAGTAATTCCTTCGC 61.437 60.000 0.00 0.00 0.00 4.70
1678 1744 0.177141 TCCGGGCAGTAATTCCTTCG 59.823 55.000 0.00 0.00 0.00 3.79
1679 1745 2.413310 TTCCGGGCAGTAATTCCTTC 57.587 50.000 0.00 0.00 0.00 3.46
1680 1746 2.891191 TTTCCGGGCAGTAATTCCTT 57.109 45.000 0.00 0.00 0.00 3.36
1681 1747 2.891191 TTTTCCGGGCAGTAATTCCT 57.109 45.000 0.00 0.00 0.00 3.36
1708 1774 8.615878 TCTATGTATAGCAAAACACTGTTTGT 57.384 30.769 7.93 0.00 40.06 2.83
1709 1775 9.891828 TTTCTATGTATAGCAAAACACTGTTTG 57.108 29.630 7.93 4.30 40.72 2.93
1746 1812 2.308811 GAAACGTATTCGCGGCAAAAA 58.691 42.857 6.13 0.00 41.18 1.94
1747 1813 1.399984 GGAAACGTATTCGCGGCAAAA 60.400 47.619 6.13 0.00 41.18 2.44
1748 1814 0.166379 GGAAACGTATTCGCGGCAAA 59.834 50.000 6.13 0.00 41.18 3.68
1749 1815 0.671163 AGGAAACGTATTCGCGGCAA 60.671 50.000 6.13 0.00 41.18 4.52
1750 1816 1.079681 AGGAAACGTATTCGCGGCA 60.080 52.632 6.13 0.00 41.18 5.69
1751 1817 1.347221 CAGGAAACGTATTCGCGGC 59.653 57.895 6.13 0.00 41.18 6.53
1752 1818 0.738412 ACCAGGAAACGTATTCGCGG 60.738 55.000 6.13 2.34 41.18 6.46
1753 1819 1.912001 TACCAGGAAACGTATTCGCG 58.088 50.000 0.00 0.00 41.18 5.87
1754 1820 4.870221 AAATACCAGGAAACGTATTCGC 57.130 40.909 0.00 0.00 41.18 4.70
1775 1841 3.499157 CCCGTATGAGGTTTCGTGAAAAA 59.501 43.478 0.00 0.00 31.33 1.94
1776 1842 3.068560 CCCGTATGAGGTTTCGTGAAAA 58.931 45.455 0.00 0.00 31.33 2.29
1777 1843 2.299582 TCCCGTATGAGGTTTCGTGAAA 59.700 45.455 0.00 0.00 0.00 2.69
1778 1844 1.894466 TCCCGTATGAGGTTTCGTGAA 59.106 47.619 0.00 0.00 0.00 3.18
1779 1845 1.548081 TCCCGTATGAGGTTTCGTGA 58.452 50.000 0.00 0.00 0.00 4.35
1780 1846 2.373540 TTCCCGTATGAGGTTTCGTG 57.626 50.000 0.00 0.00 0.00 4.35
1781 1847 3.448301 TGTATTCCCGTATGAGGTTTCGT 59.552 43.478 0.00 0.00 0.00 3.85
1782 1848 4.049546 TGTATTCCCGTATGAGGTTTCG 57.950 45.455 0.00 0.00 0.00 3.46
1783 1849 4.684703 CGATGTATTCCCGTATGAGGTTTC 59.315 45.833 0.00 0.00 0.00 2.78
1784 1850 4.502604 CCGATGTATTCCCGTATGAGGTTT 60.503 45.833 0.00 0.00 0.00 3.27
1785 1851 3.006537 CCGATGTATTCCCGTATGAGGTT 59.993 47.826 0.00 0.00 0.00 3.50
1786 1852 2.561419 CCGATGTATTCCCGTATGAGGT 59.439 50.000 0.00 0.00 0.00 3.85
1787 1853 2.561419 ACCGATGTATTCCCGTATGAGG 59.439 50.000 0.00 0.00 0.00 3.86
1788 1854 3.936372 ACCGATGTATTCCCGTATGAG 57.064 47.619 0.00 0.00 0.00 2.90
1789 1855 4.022068 GGTTACCGATGTATTCCCGTATGA 60.022 45.833 0.00 0.00 0.00 2.15
1790 1856 4.240096 GGTTACCGATGTATTCCCGTATG 58.760 47.826 0.00 0.00 0.00 2.39
1791 1857 3.259123 GGGTTACCGATGTATTCCCGTAT 59.741 47.826 0.00 0.00 34.25 3.06
1792 1858 2.627699 GGGTTACCGATGTATTCCCGTA 59.372 50.000 0.00 0.00 34.25 4.02
1793 1859 1.413812 GGGTTACCGATGTATTCCCGT 59.586 52.381 0.00 0.00 34.25 5.28
1794 1860 1.413445 TGGGTTACCGATGTATTCCCG 59.587 52.381 0.00 0.00 40.96 5.14
1795 1861 2.804212 CGTGGGTTACCGATGTATTCCC 60.804 54.545 0.00 0.00 39.71 3.97
1796 1862 2.159057 ACGTGGGTTACCGATGTATTCC 60.159 50.000 9.52 0.00 40.75 3.01
1797 1863 3.169355 ACGTGGGTTACCGATGTATTC 57.831 47.619 9.52 0.00 40.75 1.75
1798 1864 3.615224 AACGTGGGTTACCGATGTATT 57.385 42.857 11.53 0.00 40.75 1.89
1799 1865 3.055963 TCAAACGTGGGTTACCGATGTAT 60.056 43.478 11.53 0.60 40.75 2.29
1800 1866 2.298446 TCAAACGTGGGTTACCGATGTA 59.702 45.455 11.53 0.00 40.75 2.29
1801 1867 1.070445 TCAAACGTGGGTTACCGATGT 59.930 47.619 5.42 5.42 40.75 3.06
1802 1868 1.798283 TCAAACGTGGGTTACCGATG 58.202 50.000 4.04 4.04 40.75 3.84
1803 1869 2.773993 ATCAAACGTGGGTTACCGAT 57.226 45.000 0.00 0.00 40.75 4.18
1804 1870 3.891422 ATATCAAACGTGGGTTACCGA 57.109 42.857 0.00 0.00 40.75 4.69
1805 1871 3.310501 GGAATATCAAACGTGGGTTACCG 59.689 47.826 0.00 0.00 40.75 4.02
1806 1872 4.263435 TGGAATATCAAACGTGGGTTACC 58.737 43.478 0.00 0.00 34.62 2.85
1807 1873 5.883503 TTGGAATATCAAACGTGGGTTAC 57.116 39.130 0.00 0.00 34.62 2.50
1808 1874 6.294620 GGTTTTGGAATATCAAACGTGGGTTA 60.295 38.462 0.00 0.00 36.49 2.85
1809 1875 5.510009 GGTTTTGGAATATCAAACGTGGGTT 60.510 40.000 0.00 0.00 36.49 4.11
1810 1876 4.021807 GGTTTTGGAATATCAAACGTGGGT 60.022 41.667 0.00 0.00 36.49 4.51
1811 1877 4.490743 GGTTTTGGAATATCAAACGTGGG 58.509 43.478 0.00 0.00 36.49 4.61
1812 1878 4.490743 GGGTTTTGGAATATCAAACGTGG 58.509 43.478 0.00 0.00 36.49 4.94
1813 1879 4.021894 TGGGGTTTTGGAATATCAAACGTG 60.022 41.667 0.00 0.00 36.49 4.49
1814 1880 4.153411 TGGGGTTTTGGAATATCAAACGT 58.847 39.130 0.00 0.00 36.49 3.99
1815 1881 4.461081 TCTGGGGTTTTGGAATATCAAACG 59.539 41.667 0.00 0.00 36.49 3.60
1816 1882 5.993748 TCTGGGGTTTTGGAATATCAAAC 57.006 39.130 0.00 0.00 36.49 2.93
1817 1883 7.566658 AAATCTGGGGTTTTGGAATATCAAA 57.433 32.000 0.00 0.00 35.15 2.69
1818 1884 7.566658 AAAATCTGGGGTTTTGGAATATCAA 57.433 32.000 0.00 0.00 0.00 2.57
1819 1885 7.566658 AAAAATCTGGGGTTTTGGAATATCA 57.433 32.000 0.00 0.00 0.00 2.15
1864 1930 8.221944 CCCCTATATGTACAATACCAGGAAAAA 58.778 37.037 0.00 0.00 0.00 1.94
1865 1931 7.351454 ACCCCTATATGTACAATACCAGGAAAA 59.649 37.037 0.00 0.00 0.00 2.29
1866 1932 6.852908 ACCCCTATATGTACAATACCAGGAAA 59.147 38.462 0.00 0.00 0.00 3.13
1867 1933 6.271391 CACCCCTATATGTACAATACCAGGAA 59.729 42.308 0.00 0.00 0.00 3.36
1868 1934 5.783360 CACCCCTATATGTACAATACCAGGA 59.217 44.000 0.00 0.00 0.00 3.86
1869 1935 5.570844 GCACCCCTATATGTACAATACCAGG 60.571 48.000 0.00 2.66 0.00 4.45
1870 1936 5.488341 GCACCCCTATATGTACAATACCAG 58.512 45.833 0.00 0.00 0.00 4.00
1871 1937 4.020928 CGCACCCCTATATGTACAATACCA 60.021 45.833 0.00 0.00 0.00 3.25
1872 1938 4.501071 CGCACCCCTATATGTACAATACC 58.499 47.826 0.00 0.00 0.00 2.73
1873 1939 4.221262 TCCGCACCCCTATATGTACAATAC 59.779 45.833 0.00 0.00 0.00 1.89
1874 1940 4.418359 TCCGCACCCCTATATGTACAATA 58.582 43.478 0.00 0.00 0.00 1.90
1875 1941 3.244582 TCCGCACCCCTATATGTACAAT 58.755 45.455 0.00 0.00 0.00 2.71
1876 1942 2.631062 CTCCGCACCCCTATATGTACAA 59.369 50.000 0.00 0.00 0.00 2.41
1877 1943 2.244695 CTCCGCACCCCTATATGTACA 58.755 52.381 0.00 0.00 0.00 2.90
1878 1944 1.067071 GCTCCGCACCCCTATATGTAC 60.067 57.143 0.00 0.00 0.00 2.90
1879 1945 1.263356 GCTCCGCACCCCTATATGTA 58.737 55.000 0.00 0.00 0.00 2.29
1880 1946 0.762842 TGCTCCGCACCCCTATATGT 60.763 55.000 0.00 0.00 31.71 2.29
1881 1947 2.057830 TGCTCCGCACCCCTATATG 58.942 57.895 0.00 0.00 31.71 1.78
1882 1948 4.639726 TGCTCCGCACCCCTATAT 57.360 55.556 0.00 0.00 31.71 0.86
1896 1962 1.036707 GATTAGAGCTCTCGGGTGCT 58.963 55.000 22.17 12.49 43.76 4.40
1897 1963 0.032815 GGATTAGAGCTCTCGGGTGC 59.967 60.000 22.17 0.00 34.09 5.01
1898 1964 1.611491 GAGGATTAGAGCTCTCGGGTG 59.389 57.143 22.17 0.00 34.09 4.61
1899 1965 1.816183 CGAGGATTAGAGCTCTCGGGT 60.816 57.143 22.17 4.55 43.49 5.28
1900 1966 0.878416 CGAGGATTAGAGCTCTCGGG 59.122 60.000 22.17 0.00 43.49 5.14
1903 1969 1.533731 CGGACGAGGATTAGAGCTCTC 59.466 57.143 22.17 6.17 0.00 3.20
1904 1970 1.600023 CGGACGAGGATTAGAGCTCT 58.400 55.000 22.17 22.17 0.00 4.09
1905 1971 0.594110 CCGGACGAGGATTAGAGCTC 59.406 60.000 5.27 5.27 0.00 4.09
1906 1972 0.106619 ACCGGACGAGGATTAGAGCT 60.107 55.000 9.46 0.00 34.73 4.09
1907 1973 1.266446 GTACCGGACGAGGATTAGAGC 59.734 57.143 9.46 0.00 34.73 4.09
1919 1985 1.361668 TAGTGCGAGACGTACCGGAC 61.362 60.000 20.40 20.40 42.98 4.79
1920 1986 0.673333 TTAGTGCGAGACGTACCGGA 60.673 55.000 9.46 5.33 42.98 5.14
1921 1987 0.379669 ATTAGTGCGAGACGTACCGG 59.620 55.000 0.00 0.00 42.98 5.28
1922 1988 2.184385 AATTAGTGCGAGACGTACCG 57.816 50.000 8.51 4.88 42.98 4.02
1923 1989 3.504863 TCAAATTAGTGCGAGACGTACC 58.495 45.455 8.51 0.00 42.98 3.34
1924 1990 5.697848 ATTCAAATTAGTGCGAGACGTAC 57.302 39.130 4.43 4.43 42.35 3.67
1925 1991 6.715344 AAATTCAAATTAGTGCGAGACGTA 57.285 33.333 0.00 0.00 0.00 3.57
1926 1992 5.607119 AAATTCAAATTAGTGCGAGACGT 57.393 34.783 0.00 0.00 0.00 4.34
1927 1993 7.527516 GCTATAAATTCAAATTAGTGCGAGACG 59.472 37.037 0.00 0.00 0.00 4.18
1928 1994 8.335356 TGCTATAAATTCAAATTAGTGCGAGAC 58.665 33.333 0.00 0.00 0.00 3.36
1950 2016 6.983890 TGCTTAAATCACGATTGTAGATGCTA 59.016 34.615 0.00 0.00 0.00 3.49
1951 2017 5.817296 TGCTTAAATCACGATTGTAGATGCT 59.183 36.000 0.00 0.00 0.00 3.79
2296 2988 4.003648 GACGAACAACCATTCTCATTCCT 58.996 43.478 0.00 0.00 0.00 3.36
2462 3158 6.183360 GGCATAGAAACAAAGAGAGAATCCAC 60.183 42.308 0.00 0.00 33.66 4.02
2499 3198 7.381408 AGGCGAAGAAACTTGTTTTATTTAAGC 59.619 33.333 0.06 6.48 28.51 3.09
2687 3386 1.867233 CCGATTCTCCTGCAAATACCG 59.133 52.381 0.00 0.00 0.00 4.02
2725 3424 1.250840 GGGTTGGCCTCCATGTGTTC 61.251 60.000 16.91 0.00 31.53 3.18
2799 3499 0.383246 CGCTATTCTCCGACGACGAG 60.383 60.000 9.28 4.75 42.66 4.18
2843 3543 1.131126 TCCGTTAGTTCACCGTCGATC 59.869 52.381 0.00 0.00 0.00 3.69
2861 3561 2.269241 CCTTCCCGCCTTCACTCC 59.731 66.667 0.00 0.00 0.00 3.85
2881 3581 3.286751 GCCTGCTTGCAACGTCCA 61.287 61.111 0.00 0.00 0.00 4.02
3044 4394 6.427974 TCGAGCGTAAGTTCTATGACTATTG 58.572 40.000 0.00 0.00 46.30 1.90
3045 4395 6.615264 TCGAGCGTAAGTTCTATGACTATT 57.385 37.500 0.00 0.00 46.30 1.73
3061 4411 2.148916 TCAAACTGAACATCGAGCGT 57.851 45.000 0.00 0.00 0.00 5.07
3101 4451 7.280356 ACAACAAGTTAGATGACTACAAACCT 58.720 34.615 0.00 0.00 0.00 3.50
3103 4453 9.221775 CAAACAACAAGTTAGATGACTACAAAC 57.778 33.333 0.00 0.00 40.26 2.93
3107 4457 7.352739 CACCAAACAACAAGTTAGATGACTAC 58.647 38.462 0.00 0.00 40.26 2.73
3109 4459 5.221048 GCACCAAACAACAAGTTAGATGACT 60.221 40.000 0.00 0.00 40.26 3.41
3144 4494 3.149196 ACGTCCGGTTACAGTAGAAAGA 58.851 45.455 0.00 0.00 0.00 2.52
3276 4652 7.235606 CCCTCCTATCATTCCTCAATACTGTTA 59.764 40.741 0.00 0.00 0.00 2.41
3399 4790 3.439476 CAGGAGCTCCAAATGAAGAGTTG 59.561 47.826 33.90 15.00 38.89 3.16
3440 4831 6.346477 TGGTCTTCGCTGATTATTATAGCT 57.654 37.500 0.00 0.00 35.36 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.