Multiple sequence alignment - TraesCS1B01G247300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G247300 chr1B 100.000 3865 0 0 571 4435 438033665 438037529 0.000000e+00 7138.0
1 TraesCS1B01G247300 chr1B 100.000 208 0 0 1 208 438033095 438033302 6.960000e-103 385.0
2 TraesCS1B01G247300 chr1A 93.266 1396 56 21 3058 4435 418934298 418932923 0.000000e+00 2023.0
3 TraesCS1B01G247300 chr1A 97.388 957 23 2 1825 2780 418935320 418934365 0.000000e+00 1628.0
4 TraesCS1B01G247300 chr1A 91.003 1156 57 14 571 1684 418936688 418935538 0.000000e+00 1515.0
5 TraesCS1B01G247300 chr1A 98.131 107 2 0 46 152 418936953 418936847 2.110000e-43 187.0
6 TraesCS1B01G247300 chr1A 94.366 71 4 0 2979 3049 418934343 418934273 4.690000e-20 110.0
7 TraesCS1B01G247300 chr1A 100.000 32 0 0 1939 1970 418935510 418935541 4.790000e-05 60.2
8 TraesCS1B01G247300 chr1D 93.944 1255 34 6 1476 2695 325591580 325592827 0.000000e+00 1858.0
9 TraesCS1B01G247300 chr1D 94.750 800 20 4 3058 3852 325592952 325593734 0.000000e+00 1225.0
10 TraesCS1B01G247300 chr1D 91.065 873 44 9 571 1412 325590707 325591576 0.000000e+00 1149.0
11 TraesCS1B01G247300 chr1D 88.372 430 40 6 3851 4271 325593874 325594302 3.960000e-140 508.0
12 TraesCS1B01G247300 chr1D 93.301 209 12 2 1 208 325590382 325590589 1.550000e-79 307.0
13 TraesCS1B01G247300 chr1D 96.450 169 6 0 2778 2946 238940216 238940384 3.380000e-71 279.0
14 TraesCS1B01G247300 chr1D 86.525 141 16 2 1340 1478 104466124 104466263 7.680000e-33 152.0
15 TraesCS1B01G247300 chr1D 95.588 68 3 0 2979 3046 325592907 325592974 4.690000e-20 110.0
16 TraesCS1B01G247300 chr1D 100.000 58 0 0 2723 2780 325592828 325592885 1.690000e-19 108.0
17 TraesCS1B01G247300 chr2D 92.172 511 32 5 1265 1774 506282828 506283331 0.000000e+00 715.0
18 TraesCS1B01G247300 chr2D 97.006 167 5 0 2776 2942 316333946 316334112 9.390000e-72 281.0
19 TraesCS1B01G247300 chr2D 86.525 141 16 2 1340 1478 53761885 53762024 7.680000e-33 152.0
20 TraesCS1B01G247300 chr7B 89.412 510 46 5 1265 1774 29941785 29941284 1.740000e-178 636.0
21 TraesCS1B01G247300 chr5D 96.491 171 6 0 2776 2946 274578010 274578180 2.610000e-72 283.0
22 TraesCS1B01G247300 chr4D 96.491 171 6 0 2774 2944 93338210 93338040 2.610000e-72 283.0
23 TraesCS1B01G247300 chr6B 96.471 170 4 2 2777 2945 57455632 57455800 3.380000e-71 279.0
24 TraesCS1B01G247300 chr3B 94.475 181 8 2 2774 2954 580469268 580469446 1.210000e-70 278.0
25 TraesCS1B01G247300 chr3B 88.489 139 12 2 1340 1478 772757058 772756924 9.870000e-37 165.0
26 TraesCS1B01G247300 chr7D 95.882 170 7 0 2773 2942 517575230 517575399 4.370000e-70 276.0
27 TraesCS1B01G247300 chr7D 85.106 141 18 2 1340 1478 103803607 103803468 1.660000e-29 141.0
28 TraesCS1B01G247300 chr4B 95.402 174 7 1 2770 2943 80990642 80990814 4.370000e-70 276.0
29 TraesCS1B01G247300 chr3D 91.237 194 15 2 2750 2942 353212342 353212150 3.400000e-66 263.0
30 TraesCS1B01G247300 chr3D 92.500 120 9 0 1265 1384 488892500 488892619 5.900000e-39 172.0
31 TraesCS1B01G247300 chr6D 77.305 141 15 14 4022 4153 444900476 444900608 2.860000e-07 67.6
32 TraesCS1B01G247300 chr6D 77.305 141 15 14 4022 4153 444903003 444903135 2.860000e-07 67.6
33 TraesCS1B01G247300 chr6D 77.305 141 15 14 4022 4153 444913241 444913373 2.860000e-07 67.6
34 TraesCS1B01G247300 chr6D 77.305 141 15 14 4022 4153 444929112 444929244 2.860000e-07 67.6
35 TraesCS1B01G247300 chr6D 77.305 141 15 14 4022 4153 444939589 444939721 2.860000e-07 67.6
36 TraesCS1B01G247300 chr6D 77.305 141 15 14 4022 4153 444950873 444951005 2.860000e-07 67.6
37 TraesCS1B01G247300 chr6D 77.305 141 15 14 4022 4153 444956080 444956212 2.860000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G247300 chr1B 438033095 438037529 4434 False 3761.500000 7138 100.0000 1 4435 2 chr1B.!!$F1 4434
1 TraesCS1B01G247300 chr1A 418932923 418936953 4030 True 1092.600000 2023 94.8308 46 4435 5 chr1A.!!$R1 4389
2 TraesCS1B01G247300 chr1D 325590382 325594302 3920 False 752.142857 1858 93.8600 1 4271 7 chr1D.!!$F3 4270
3 TraesCS1B01G247300 chr2D 506282828 506283331 503 False 715.000000 715 92.1720 1265 1774 1 chr2D.!!$F3 509
4 TraesCS1B01G247300 chr7B 29941284 29941785 501 True 636.000000 636 89.4120 1265 1774 1 chr7B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 967 0.179073 CCGCAAATGATCCGAGTCCT 60.179 55.0 0.00 0.00 0.0 3.85 F
1113 1154 0.387565 GCCTCTCTCCCATCGTTCTC 59.612 60.0 0.00 0.00 0.0 2.87 F
2611 2746 0.875908 TTCAGCGTGTCACACTCTGC 60.876 55.0 21.06 10.33 44.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2611 2746 1.155042 GAAGCTTGACCTCAGTGCAG 58.845 55.000 2.1 0.0 32.36 4.41 R
2656 2791 3.971032 AGCTTCGAGAACAAAACTTGG 57.029 42.857 0.0 0.0 34.12 3.61 R
4391 4686 1.028330 CCTCAATGCCACGACATGCT 61.028 55.000 0.0 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.813027 TGTAGAAACCAAGTAACTAGCGG 58.187 43.478 0.00 0.00 0.00 5.52
113 114 2.076100 CAGCAAGCACATTAGAACCGA 58.924 47.619 0.00 0.00 0.00 4.69
681 682 5.074115 TGATGGGGGCGGTAAATAAAATAG 58.926 41.667 0.00 0.00 0.00 1.73
683 684 4.721132 TGGGGGCGGTAAATAAAATAGAG 58.279 43.478 0.00 0.00 0.00 2.43
684 685 3.504906 GGGGGCGGTAAATAAAATAGAGC 59.495 47.826 0.00 0.00 0.00 4.09
685 686 3.187842 GGGGCGGTAAATAAAATAGAGCG 59.812 47.826 0.00 0.00 0.00 5.03
692 705 9.099820 GCGGTAAATAAAATAGAGCGAAATAAC 57.900 33.333 0.00 0.00 33.07 1.89
701 714 2.101835 GCGAAATAACCCGCGGACA 61.102 57.895 30.73 11.68 42.02 4.02
704 717 1.371337 GAAATAACCCGCGGACACCC 61.371 60.000 30.73 5.40 0.00 4.61
792 832 2.889018 GGTCGCCGTCGGGAATTC 60.889 66.667 14.38 0.00 36.13 2.17
829 870 2.024871 GCGACCCGAGACAGATCG 59.975 66.667 0.00 0.00 42.36 3.69
926 967 0.179073 CCGCAAATGATCCGAGTCCT 60.179 55.000 0.00 0.00 0.00 3.85
1059 1100 2.827642 GACGACCTCCCCGACGAT 60.828 66.667 0.00 0.00 0.00 3.73
1103 1144 4.154347 CCAGGTGCGCCTCTCTCC 62.154 72.222 18.11 0.00 44.97 3.71
1106 1147 3.474570 GGTGCGCCTCTCTCCCAT 61.475 66.667 9.68 0.00 0.00 4.00
1112 1153 1.388065 CGCCTCTCTCCCATCGTTCT 61.388 60.000 0.00 0.00 0.00 3.01
1113 1154 0.387565 GCCTCTCTCCCATCGTTCTC 59.612 60.000 0.00 0.00 0.00 2.87
1114 1155 2.026905 GCCTCTCTCCCATCGTTCTCT 61.027 57.143 0.00 0.00 0.00 3.10
1115 1156 1.953686 CCTCTCTCCCATCGTTCTCTC 59.046 57.143 0.00 0.00 0.00 3.20
1116 1157 2.422803 CCTCTCTCCCATCGTTCTCTCT 60.423 54.545 0.00 0.00 0.00 3.10
1117 1158 2.618241 CTCTCTCCCATCGTTCTCTCTG 59.382 54.545 0.00 0.00 0.00 3.35
1118 1159 2.025793 TCTCTCCCATCGTTCTCTCTGT 60.026 50.000 0.00 0.00 0.00 3.41
1163 1205 3.482783 GGCTCGCTCGTTGACTGC 61.483 66.667 0.00 0.00 0.00 4.40
1167 1209 2.811317 CGCTCGTTGACTGCCTCC 60.811 66.667 0.00 0.00 0.00 4.30
1263 1305 2.352805 GTGTGGGAGGGCCTCTTG 59.647 66.667 31.39 0.00 0.00 3.02
1333 1375 4.680237 CTTCCCGTGCGCAGGTGA 62.680 66.667 26.57 19.45 0.00 4.02
1413 1455 2.227388 CTCTTGGGTTCACAGTTCATGC 59.773 50.000 0.00 0.00 0.00 4.06
1441 1483 6.308371 TGCATACTCGATTGAACGACTATA 57.692 37.500 0.00 0.00 37.37 1.31
1443 1485 7.368059 TGCATACTCGATTGAACGACTATAAT 58.632 34.615 0.00 0.00 37.37 1.28
1444 1486 8.508875 TGCATACTCGATTGAACGACTATAATA 58.491 33.333 0.00 0.00 37.37 0.98
1445 1487 8.786955 GCATACTCGATTGAACGACTATAATAC 58.213 37.037 0.00 0.00 37.37 1.89
1570 1612 1.656441 CTTTCACACCCTGCAGTGC 59.344 57.895 13.81 8.58 41.67 4.40
1663 1706 4.937620 ACTGTCGTACGTCAACTAGGAATA 59.062 41.667 16.05 0.00 0.00 1.75
1674 1717 6.401688 CGTCAACTAGGAATAATTTTGTCGCA 60.402 38.462 0.00 0.00 0.00 5.10
1676 1719 7.270579 GTCAACTAGGAATAATTTTGTCGCAAC 59.729 37.037 0.00 0.00 0.00 4.17
1708 1790 9.965902 ACTAGGACAATTCATGAGTTTCTTATT 57.034 29.630 0.00 0.00 0.00 1.40
1774 1857 7.159372 TGAATTTGGGTTCTAGTTCAGTCTAC 58.841 38.462 0.00 0.00 0.00 2.59
1823 1931 1.819903 GAGGTCTCTTAGCCAGTTCGT 59.180 52.381 0.00 0.00 0.00 3.85
2205 2340 4.494855 GGTCGCTTGAAGCTGAATGTTATC 60.495 45.833 15.92 1.32 39.60 1.75
2229 2364 4.156556 TGAAAGCTATGTCTGATTTGGCAC 59.843 41.667 0.00 0.00 0.00 5.01
2235 2370 2.439409 TGTCTGATTTGGCACTGATGG 58.561 47.619 0.00 0.00 0.00 3.51
2367 2502 7.125659 TGGTGAGTTATGATTCCTGATGTTCTA 59.874 37.037 0.00 0.00 0.00 2.10
2512 2647 9.036980 ACCTATTACCTGGTATAAAGAGCTATG 57.963 37.037 7.50 0.00 34.36 2.23
2520 2655 7.933577 CCTGGTATAAAGAGCTATGTCATTCAA 59.066 37.037 0.00 0.00 0.00 2.69
2611 2746 0.875908 TTCAGCGTGTCACACTCTGC 60.876 55.000 21.06 10.33 44.00 4.26
2656 2791 4.097892 TCTGTCTTTTTCCTCAAACAAGGC 59.902 41.667 0.00 0.00 36.29 4.35
2670 2805 3.801114 ACAAGGCCAAGTTTTGTTCTC 57.199 42.857 5.01 0.00 31.38 2.87
2779 2914 4.659111 CATGCCATGTTTGGTCATGTAT 57.341 40.909 15.33 0.00 44.19 2.29
2780 2915 5.013568 CATGCCATGTTTGGTCATGTATT 57.986 39.130 15.33 0.00 44.19 1.89
2781 2916 4.717233 TGCCATGTTTGGTCATGTATTC 57.283 40.909 0.00 0.00 45.57 1.75
2782 2917 3.446873 TGCCATGTTTGGTCATGTATTCC 59.553 43.478 0.00 0.00 45.57 3.01
2783 2918 3.181476 GCCATGTTTGGTCATGTATTCCC 60.181 47.826 0.00 0.00 45.57 3.97
2784 2919 4.280819 CCATGTTTGGTCATGTATTCCCT 58.719 43.478 0.00 0.00 42.29 4.20
2785 2920 4.339247 CCATGTTTGGTCATGTATTCCCTC 59.661 45.833 0.00 0.00 42.29 4.30
2786 2921 3.963129 TGTTTGGTCATGTATTCCCTCC 58.037 45.455 0.00 0.00 0.00 4.30
2787 2922 2.943033 GTTTGGTCATGTATTCCCTCCG 59.057 50.000 0.00 0.00 0.00 4.63
2788 2923 1.874129 TGGTCATGTATTCCCTCCGT 58.126 50.000 0.00 0.00 0.00 4.69
2789 2924 2.193127 TGGTCATGTATTCCCTCCGTT 58.807 47.619 0.00 0.00 0.00 4.44
2790 2925 2.169769 TGGTCATGTATTCCCTCCGTTC 59.830 50.000 0.00 0.00 0.00 3.95
2791 2926 2.484947 GGTCATGTATTCCCTCCGTTCC 60.485 54.545 0.00 0.00 0.00 3.62
2792 2927 2.434702 GTCATGTATTCCCTCCGTTCCT 59.565 50.000 0.00 0.00 0.00 3.36
2793 2928 3.640029 GTCATGTATTCCCTCCGTTCCTA 59.360 47.826 0.00 0.00 0.00 2.94
2794 2929 4.100498 GTCATGTATTCCCTCCGTTCCTAA 59.900 45.833 0.00 0.00 0.00 2.69
2795 2930 4.717778 TCATGTATTCCCTCCGTTCCTAAA 59.282 41.667 0.00 0.00 0.00 1.85
2796 2931 5.368523 TCATGTATTCCCTCCGTTCCTAAAT 59.631 40.000 0.00 0.00 0.00 1.40
2797 2932 6.555738 TCATGTATTCCCTCCGTTCCTAAATA 59.444 38.462 0.00 0.00 0.00 1.40
2798 2933 7.236847 TCATGTATTCCCTCCGTTCCTAAATAT 59.763 37.037 0.00 0.00 0.00 1.28
2799 2934 7.383156 TGTATTCCCTCCGTTCCTAAATATT 57.617 36.000 0.00 0.00 0.00 1.28
2800 2935 7.808218 TGTATTCCCTCCGTTCCTAAATATTT 58.192 34.615 5.89 5.89 0.00 1.40
2801 2936 8.936787 TGTATTCCCTCCGTTCCTAAATATTTA 58.063 33.333 7.66 7.66 0.00 1.40
2802 2937 9.955102 GTATTCCCTCCGTTCCTAAATATTTAT 57.045 33.333 8.34 0.00 0.00 1.40
2804 2939 7.867160 TCCCTCCGTTCCTAAATATTTATCT 57.133 36.000 8.34 0.00 0.00 1.98
2805 2940 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
2806 2941 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
2807 2942 9.350951 CCCTCCGTTCCTAAATATTTATCTTTT 57.649 33.333 8.34 0.00 0.00 2.27
2845 2980 7.727578 TGGATTACCACATACGGATGTATAT 57.272 36.000 14.23 4.37 44.82 0.86
2846 2981 8.826293 TGGATTACCACATACGGATGTATATA 57.174 34.615 14.23 3.33 44.82 0.86
2847 2982 8.909923 TGGATTACCACATACGGATGTATATAG 58.090 37.037 14.23 0.00 44.82 1.31
2848 2983 9.128404 GGATTACCACATACGGATGTATATAGA 57.872 37.037 14.23 0.00 44.82 1.98
2849 2984 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
2850 2985 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
2851 2986 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2853 2988 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2882 3017 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2883 3018 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2884 3019 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
2885 3020 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
2886 3021 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
2887 3022 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
2888 3023 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
2889 3024 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
2890 3025 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
2891 3026 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
2892 3027 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
2893 3028 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
2894 3029 6.539826 CACTCATTTTGCTCCATATGTAGTCA 59.460 38.462 1.24 0.00 0.00 3.41
2895 3030 6.540189 ACTCATTTTGCTCCATATGTAGTCAC 59.460 38.462 1.24 0.00 0.00 3.67
2896 3031 6.653020 TCATTTTGCTCCATATGTAGTCACT 58.347 36.000 1.24 0.00 0.00 3.41
2897 3032 7.112122 TCATTTTGCTCCATATGTAGTCACTT 58.888 34.615 1.24 0.00 0.00 3.16
2898 3033 6.741992 TTTTGCTCCATATGTAGTCACTTG 57.258 37.500 1.24 0.00 0.00 3.16
2899 3034 5.420725 TTGCTCCATATGTAGTCACTTGT 57.579 39.130 1.24 0.00 0.00 3.16
2900 3035 5.420725 TGCTCCATATGTAGTCACTTGTT 57.579 39.130 1.24 0.00 0.00 2.83
2901 3036 5.178061 TGCTCCATATGTAGTCACTTGTTG 58.822 41.667 1.24 0.00 0.00 3.33
2902 3037 5.046663 TGCTCCATATGTAGTCACTTGTTGA 60.047 40.000 1.24 0.00 0.00 3.18
2903 3038 5.874810 GCTCCATATGTAGTCACTTGTTGAA 59.125 40.000 1.24 0.00 35.39 2.69
2904 3039 6.371548 GCTCCATATGTAGTCACTTGTTGAAA 59.628 38.462 1.24 0.00 35.39 2.69
2905 3040 7.066284 GCTCCATATGTAGTCACTTGTTGAAAT 59.934 37.037 1.24 0.00 35.39 2.17
2906 3041 8.492673 TCCATATGTAGTCACTTGTTGAAATC 57.507 34.615 1.24 0.00 35.39 2.17
2907 3042 8.321353 TCCATATGTAGTCACTTGTTGAAATCT 58.679 33.333 1.24 0.00 35.39 2.40
2908 3043 8.607459 CCATATGTAGTCACTTGTTGAAATCTC 58.393 37.037 1.24 0.00 35.39 2.75
2909 3044 9.376075 CATATGTAGTCACTTGTTGAAATCTCT 57.624 33.333 0.00 0.00 35.39 3.10
2911 3046 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2912 3047 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2913 3048 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2914 3049 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2915 3050 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2916 3051 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2917 3052 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2918 3053 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2919 3054 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2920 3055 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2936 3071 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
2937 3072 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
2938 3073 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
3035 3170 4.724399 TGGTAACATCAGAAAGCTTTGGA 58.276 39.130 18.30 14.14 46.17 3.53
3036 3171 5.324409 TGGTAACATCAGAAAGCTTTGGAT 58.676 37.500 18.30 15.79 46.17 3.41
3037 3172 6.480763 TGGTAACATCAGAAAGCTTTGGATA 58.519 36.000 18.30 2.27 46.17 2.59
3038 3173 6.945435 TGGTAACATCAGAAAGCTTTGGATAA 59.055 34.615 18.30 5.96 46.17 1.75
3039 3174 7.615365 TGGTAACATCAGAAAGCTTTGGATAAT 59.385 33.333 18.30 12.60 46.17 1.28
3040 3175 9.120538 GGTAACATCAGAAAGCTTTGGATAATA 57.879 33.333 18.30 11.75 0.00 0.98
3329 3468 3.802685 AGTCGTACAAAAACTCACTGAGC 59.197 43.478 5.92 0.00 32.04 4.26
3360 3499 0.596082 CGATGACGGGGCAAAAGTTT 59.404 50.000 0.00 0.00 35.72 2.66
3583 3723 3.554129 GGGGAAATACCAAACACTGTTGC 60.554 47.826 0.00 0.00 41.20 4.17
3629 3769 0.249699 TCGCCATGACGTGTGACTTT 60.250 50.000 0.16 0.00 0.00 2.66
3638 3778 4.300803 TGACGTGTGACTTTGGTGTATAC 58.699 43.478 0.00 0.00 0.00 1.47
3670 3810 5.508825 GGTGACAAATTGACAATGCCAGTTA 60.509 40.000 0.34 0.00 0.00 2.24
3709 3849 4.655762 TCTCTCATTTCCGTATGGTCTG 57.344 45.455 0.00 0.00 36.30 3.51
3757 3897 6.991938 AGAGAATACATCATCCTACTTCAGC 58.008 40.000 0.00 0.00 0.00 4.26
3973 4256 9.794719 AAGGAGTTAAAAGCTTTTACTGAGTAT 57.205 29.630 27.22 11.34 32.77 2.12
3987 4270 4.366267 ACTGAGTATTTCCTCCATCTGGT 58.634 43.478 0.00 0.00 36.34 4.00
3992 4275 7.872138 TGAGTATTTCCTCCATCTGGTTTTAT 58.128 34.615 0.00 0.00 36.34 1.40
4138 4422 2.778270 AGAGGGCCTAATAAACCTGGAC 59.222 50.000 5.73 0.00 32.42 4.02
4202 4486 2.879103 CCTTGAGGAGTAGGCCAAAA 57.121 50.000 5.01 0.00 37.39 2.44
4203 4487 3.154827 CCTTGAGGAGTAGGCCAAAAA 57.845 47.619 5.01 0.00 37.39 1.94
4261 4555 8.193438 AACTTTTCAGTTTCCAGAAATTCTGAG 58.807 33.333 23.32 13.52 42.71 3.35
4367 4662 2.609350 TCATCGTTAAGGTTACGGCAC 58.391 47.619 0.00 0.00 39.38 5.01
4371 4666 1.387756 CGTTAAGGTTACGGCACTTCG 59.612 52.381 0.00 0.00 35.47 3.79
4386 4681 6.073765 ACGGCACTTCGATGCTTAATTAATAG 60.074 38.462 10.61 0.00 45.38 1.73
4388 4683 7.148573 CGGCACTTCGATGCTTAATTAATAGAT 60.149 37.037 10.61 0.00 45.38 1.98
4389 4684 9.151471 GGCACTTCGATGCTTAATTAATAGATA 57.849 33.333 10.61 0.00 45.38 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.292569 TCCGCTATCCGCTAGTTACTTG 59.707 50.000 0.00 0.00 36.13 3.16
11 12 2.267174 TCCGCTATCCGCTAGTTACT 57.733 50.000 0.00 0.00 36.13 2.24
12 13 2.486982 TCATCCGCTATCCGCTAGTTAC 59.513 50.000 0.00 0.00 36.13 2.50
13 14 2.486982 GTCATCCGCTATCCGCTAGTTA 59.513 50.000 0.00 0.00 36.13 2.24
14 15 1.269998 GTCATCCGCTATCCGCTAGTT 59.730 52.381 0.00 0.00 36.13 2.24
16 17 0.179187 CGTCATCCGCTATCCGCTAG 60.179 60.000 0.00 0.00 36.13 3.42
17 18 1.583495 CCGTCATCCGCTATCCGCTA 61.583 60.000 0.00 0.00 36.13 4.26
18 19 2.645567 CGTCATCCGCTATCCGCT 59.354 61.111 0.00 0.00 36.13 5.52
19 20 1.859427 TACCGTCATCCGCTATCCGC 61.859 60.000 0.00 0.00 35.03 5.54
20 21 0.809385 ATACCGTCATCCGCTATCCG 59.191 55.000 0.00 0.00 34.38 4.18
21 22 3.314541 AAATACCGTCATCCGCTATCC 57.685 47.619 0.00 0.00 34.38 2.59
22 23 3.678548 GGAAAATACCGTCATCCGCTATC 59.321 47.826 0.00 0.00 34.38 2.08
581 582 8.219178 ACTTCTCCTACTCCGAATATTTCTCTA 58.781 37.037 0.00 0.00 0.00 2.43
649 650 1.032014 CGCCCCCATCAACTTTATGG 58.968 55.000 0.00 0.00 43.06 2.74
661 662 4.721132 CTCTATTTTATTTACCGCCCCCA 58.279 43.478 0.00 0.00 0.00 4.96
684 685 1.698714 GGTGTCCGCGGGTTATTTCG 61.699 60.000 27.83 0.00 0.00 3.46
685 686 1.371337 GGGTGTCCGCGGGTTATTTC 61.371 60.000 27.83 8.63 0.00 2.17
699 712 3.980442 AACGTGCCGTGTTGGGTGT 62.980 57.895 0.94 0.00 39.99 4.16
701 714 0.747283 TAAAACGTGCCGTGTTGGGT 60.747 50.000 11.85 0.00 39.99 4.51
704 717 3.791887 TCAAAATAAAACGTGCCGTGTTG 59.208 39.130 11.85 0.00 39.99 3.33
736 756 8.030106 CACTTAATCAAATTAAAACGCCCCTAA 58.970 33.333 0.00 0.00 34.59 2.69
759 779 3.314331 CCGAGGTGGACCAGCACT 61.314 66.667 24.98 9.58 42.00 4.40
792 832 0.327000 ACCTCTCCCCCTCCTCAATG 60.327 60.000 0.00 0.00 0.00 2.82
829 870 2.190578 CCGGGATTCTCTGTGGCC 59.809 66.667 0.00 0.00 0.00 5.36
868 909 3.319198 GGGCCACGTGGAGGAAGA 61.319 66.667 38.30 0.00 37.39 2.87
1059 1100 2.257371 GCGACGGCGATGGCTATA 59.743 61.111 18.90 0.00 40.82 1.31
1103 1144 2.223595 ACGCATACAGAGAGAACGATGG 60.224 50.000 0.00 0.00 0.00 3.51
1106 1147 2.031807 GCTACGCATACAGAGAGAACGA 59.968 50.000 0.00 0.00 0.00 3.85
1163 1205 4.463879 CCTGAGCACGGCTGGAGG 62.464 72.222 2.98 5.00 39.88 4.30
1366 1408 2.009681 AAGTTGGGGGAAATGGACAC 57.990 50.000 0.00 0.00 0.00 3.67
1413 1455 0.249447 TCAATCGAGTATGCAGGCCG 60.249 55.000 0.00 0.00 0.00 6.13
1570 1612 4.504461 CCGACTTAGTAGCATAGCAAACAG 59.496 45.833 0.00 0.00 0.00 3.16
1624 1667 3.123621 CGACAGTGAAATTAGCCTCACAC 59.876 47.826 9.94 0.00 43.64 3.82
1663 1706 6.597672 TCCTAGTATGATGTTGCGACAAAATT 59.402 34.615 11.67 0.00 39.66 1.82
1674 1717 8.489489 ACTCATGAATTGTCCTAGTATGATGTT 58.511 33.333 0.00 0.00 0.00 2.71
1676 1719 8.899427 AACTCATGAATTGTCCTAGTATGATG 57.101 34.615 0.00 0.00 0.00 3.07
1774 1857 3.365969 GGCTCTACACAAAAATTGGACCG 60.366 47.826 0.00 0.00 34.12 4.79
2051 2186 5.463061 CACCAAAAAGCAAGGTTAATCTGTG 59.537 40.000 0.00 0.00 32.15 3.66
2205 2340 4.397103 TGCCAAATCAGACATAGCTTTCAG 59.603 41.667 0.00 0.00 0.00 3.02
2229 2364 3.766591 ACGAAGCCTATATCCTCCATCAG 59.233 47.826 0.00 0.00 0.00 2.90
2235 2370 5.140747 ACATTGACGAAGCCTATATCCTC 57.859 43.478 0.00 0.00 0.00 3.71
2367 2502 6.705381 GCATGTATCATAAGAAGAGCTCAACT 59.295 38.462 17.77 11.54 0.00 3.16
2503 2638 9.013229 TGTTTACATTTGAATGACATAGCTCTT 57.987 29.630 10.48 0.00 39.67 2.85
2611 2746 1.155042 GAAGCTTGACCTCAGTGCAG 58.845 55.000 2.10 0.00 32.36 4.41
2656 2791 3.971032 AGCTTCGAGAACAAAACTTGG 57.029 42.857 0.00 0.00 34.12 3.61
2776 2911 9.955102 ATAAATATTTAGGAACGGAGGGAATAC 57.045 33.333 13.15 0.00 0.00 1.89
2778 2913 8.891501 AGATAAATATTTAGGAACGGAGGGAAT 58.108 33.333 13.15 0.00 0.00 3.01
2779 2914 8.271398 AGATAAATATTTAGGAACGGAGGGAA 57.729 34.615 13.15 0.00 0.00 3.97
2780 2915 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
2781 2916 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
2810 2945 9.878599 CGTATGTGGTAATCCATTTAAAATCTC 57.121 33.333 0.00 0.00 46.20 2.75
2811 2946 8.846211 CCGTATGTGGTAATCCATTTAAAATCT 58.154 33.333 0.00 0.00 46.20 2.40
2812 2947 8.842280 TCCGTATGTGGTAATCCATTTAAAATC 58.158 33.333 0.00 0.00 46.20 2.17
2813 2948 8.754991 TCCGTATGTGGTAATCCATTTAAAAT 57.245 30.769 0.00 0.00 46.20 1.82
2814 2949 8.625651 CATCCGTATGTGGTAATCCATTTAAAA 58.374 33.333 0.00 0.00 46.20 1.52
2815 2950 7.776030 ACATCCGTATGTGGTAATCCATTTAAA 59.224 33.333 0.00 0.00 44.79 1.52
2816 2951 7.284074 ACATCCGTATGTGGTAATCCATTTAA 58.716 34.615 0.00 0.00 44.79 1.52
2817 2952 6.833041 ACATCCGTATGTGGTAATCCATTTA 58.167 36.000 0.00 0.00 44.79 1.40
2818 2953 5.690865 ACATCCGTATGTGGTAATCCATTT 58.309 37.500 0.00 0.00 44.79 2.32
2819 2954 5.304686 ACATCCGTATGTGGTAATCCATT 57.695 39.130 0.00 0.00 44.79 3.16
2820 2955 4.974645 ACATCCGTATGTGGTAATCCAT 57.025 40.909 0.00 0.00 44.79 3.41
2821 2956 7.727578 ATATACATCCGTATGTGGTAATCCA 57.272 36.000 3.56 0.00 45.99 3.41
2822 2957 9.128404 TCTATATACATCCGTATGTGGTAATCC 57.872 37.037 3.56 0.00 45.99 3.01
2823 2958 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
2824 2959 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
2825 2960 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
2827 2962 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2860 2995 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
2861 2996 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
2862 2997 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
2863 2998 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
2864 2999 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
2865 3000 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
2866 3001 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
2867 3002 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
2868 3003 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
2869 3004 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
2870 3005 6.540189 GTGACTACATATGGAGCAAAATGAGT 59.460 38.462 15.30 0.00 0.00 3.41
2871 3006 6.765036 AGTGACTACATATGGAGCAAAATGAG 59.235 38.462 15.30 0.00 0.00 2.90
2872 3007 6.653020 AGTGACTACATATGGAGCAAAATGA 58.347 36.000 15.30 0.00 0.00 2.57
2873 3008 6.932356 AGTGACTACATATGGAGCAAAATG 57.068 37.500 15.30 0.00 0.00 2.32
2874 3009 6.886459 ACAAGTGACTACATATGGAGCAAAAT 59.114 34.615 15.30 0.00 0.00 1.82
2875 3010 6.237901 ACAAGTGACTACATATGGAGCAAAA 58.762 36.000 15.30 0.00 0.00 2.44
2876 3011 5.804639 ACAAGTGACTACATATGGAGCAAA 58.195 37.500 15.30 0.00 0.00 3.68
2877 3012 5.420725 ACAAGTGACTACATATGGAGCAA 57.579 39.130 15.30 0.16 0.00 3.91
2878 3013 5.046663 TCAACAAGTGACTACATATGGAGCA 60.047 40.000 15.30 10.95 0.00 4.26
2879 3014 5.419542 TCAACAAGTGACTACATATGGAGC 58.580 41.667 15.30 8.47 0.00 4.70
2880 3015 7.905604 TTTCAACAAGTGACTACATATGGAG 57.094 36.000 13.77 13.77 35.39 3.86
2881 3016 8.321353 AGATTTCAACAAGTGACTACATATGGA 58.679 33.333 7.80 0.00 35.39 3.41
2882 3017 8.498054 AGATTTCAACAAGTGACTACATATGG 57.502 34.615 7.80 0.00 35.39 2.74
2883 3018 9.376075 AGAGATTTCAACAAGTGACTACATATG 57.624 33.333 0.00 0.00 35.39 1.78
2886 3021 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2887 3022 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2888 3023 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2889 3024 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2890 3025 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2891 3026 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2892 3027 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2893 3028 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2894 3029 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2910 3045 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
2911 3046 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
2912 3047 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
2913 3048 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
2914 3049 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
2915 3050 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
2916 3051 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
2921 3056 8.591072 CGTTTATACTCCCTCCATTCCTAAATA 58.409 37.037 0.00 0.00 0.00 1.40
2922 3057 7.072076 ACGTTTATACTCCCTCCATTCCTAAAT 59.928 37.037 0.00 0.00 0.00 1.40
2923 3058 6.384886 ACGTTTATACTCCCTCCATTCCTAAA 59.615 38.462 0.00 0.00 0.00 1.85
2924 3059 5.901276 ACGTTTATACTCCCTCCATTCCTAA 59.099 40.000 0.00 0.00 0.00 2.69
2925 3060 5.461327 ACGTTTATACTCCCTCCATTCCTA 58.539 41.667 0.00 0.00 0.00 2.94
2926 3061 4.296056 ACGTTTATACTCCCTCCATTCCT 58.704 43.478 0.00 0.00 0.00 3.36
2927 3062 4.684484 ACGTTTATACTCCCTCCATTCC 57.316 45.455 0.00 0.00 0.00 3.01
2928 3063 6.402456 AGTACGTTTATACTCCCTCCATTC 57.598 41.667 0.00 0.00 28.86 2.67
2929 3064 7.727186 TCATAGTACGTTTATACTCCCTCCATT 59.273 37.037 0.00 0.00 36.74 3.16
2930 3065 7.176340 GTCATAGTACGTTTATACTCCCTCCAT 59.824 40.741 0.00 0.00 36.74 3.41
2931 3066 6.488006 GTCATAGTACGTTTATACTCCCTCCA 59.512 42.308 0.00 0.00 36.74 3.86
2932 3067 6.488006 TGTCATAGTACGTTTATACTCCCTCC 59.512 42.308 0.00 0.00 36.74 4.30
2933 3068 7.502120 TGTCATAGTACGTTTATACTCCCTC 57.498 40.000 0.00 0.00 36.74 4.30
2934 3069 9.007901 GTATGTCATAGTACGTTTATACTCCCT 57.992 37.037 0.00 0.00 36.74 4.20
2935 3070 8.239998 GGTATGTCATAGTACGTTTATACTCCC 58.760 40.741 0.00 0.00 36.74 4.30
2936 3071 9.007901 AGGTATGTCATAGTACGTTTATACTCC 57.992 37.037 0.00 0.00 36.74 3.85
2938 3073 9.565090 TGAGGTATGTCATAGTACGTTTATACT 57.435 33.333 0.00 0.00 38.89 2.12
2975 3110 9.570468 TCTGAAGTAGTAAAGTGTTCTCTTCTA 57.430 33.333 0.00 0.00 33.57 2.10
2976 3111 8.466617 TCTGAAGTAGTAAAGTGTTCTCTTCT 57.533 34.615 0.00 0.00 33.57 2.85
3010 3145 6.945435 TCCAAAGCTTTCTGATGTTACCAATA 59.055 34.615 9.23 0.00 0.00 1.90
3049 3184 6.627395 TTGTCCGAAGCTTTCTATTTGAAA 57.373 33.333 0.00 0.00 41.85 2.69
3050 3185 6.817765 ATTGTCCGAAGCTTTCTATTTGAA 57.182 33.333 0.00 0.00 0.00 2.69
3051 3186 9.607988 TTATATTGTCCGAAGCTTTCTATTTGA 57.392 29.630 0.00 0.00 0.00 2.69
3055 3190 9.561069 ACAATTATATTGTCCGAAGCTTTCTAT 57.439 29.630 0.00 0.00 0.00 1.98
3056 3191 8.958119 ACAATTATATTGTCCGAAGCTTTCTA 57.042 30.769 0.00 0.00 0.00 2.10
3066 3201 6.377327 AAGGCTTGACAATTATATTGTCCG 57.623 37.500 22.75 16.73 46.01 4.79
3344 3483 2.619646 GACTAAAACTTTTGCCCCGTCA 59.380 45.455 0.00 0.00 0.00 4.35
3360 3499 3.659786 CACCACGGTTGAGAATGACTAA 58.340 45.455 0.00 0.00 0.00 2.24
3638 3778 3.105203 GTCAATTTGTCACCAACGTGTG 58.895 45.455 0.00 0.00 41.09 3.82
3731 3871 7.255766 GCTGAAGTAGGATGATGTATTCTCTCA 60.256 40.741 0.00 0.00 0.00 3.27
3757 3897 8.678510 GTTTCTCAAACAACATGTAATACAACG 58.321 33.333 0.00 0.00 41.04 4.10
3973 4256 8.434589 AAATTCATAAAACCAGATGGAGGAAA 57.565 30.769 5.72 0.00 38.94 3.13
4113 4397 5.023452 CCAGGTTTATTAGGCCCTCTTTTT 58.977 41.667 0.00 0.00 0.00 1.94
4115 4399 3.856206 TCCAGGTTTATTAGGCCCTCTTT 59.144 43.478 0.00 0.00 0.00 2.52
4117 4401 2.778270 GTCCAGGTTTATTAGGCCCTCT 59.222 50.000 0.00 0.00 0.00 3.69
4118 4402 2.484947 CGTCCAGGTTTATTAGGCCCTC 60.485 54.545 0.00 0.00 0.00 4.30
4119 4403 1.489230 CGTCCAGGTTTATTAGGCCCT 59.511 52.381 0.00 0.00 0.00 5.19
4138 4422 7.369803 TGTAACAAGTCTACTACTTCTACCG 57.630 40.000 0.00 0.00 45.64 4.02
4170 4454 2.146342 CCTCAAGGCGGCATTATACAG 58.854 52.381 13.08 0.00 0.00 2.74
4178 4462 2.359169 CCTACTCCTCAAGGCGGCA 61.359 63.158 13.08 0.00 34.44 5.69
4223 4517 9.920826 GGAAACTGAAAAGTTTGAATTTTGATC 57.079 29.630 8.49 0.00 41.49 2.92
4225 4519 8.839310 TGGAAACTGAAAAGTTTGAATTTTGA 57.161 26.923 8.49 0.00 41.49 2.69
4226 4520 8.934825 TCTGGAAACTGAAAAGTTTGAATTTTG 58.065 29.630 8.49 0.00 41.49 2.44
4327 4622 3.318886 GAACTCCAGTTCCTTCGTCTTC 58.681 50.000 8.09 0.00 46.42 2.87
4349 4644 3.256558 GAAGTGCCGTAACCTTAACGAT 58.743 45.455 0.00 0.00 42.90 3.73
4386 4681 3.065233 TCAATGCCACGACATGCTTTATC 59.935 43.478 0.00 0.00 0.00 1.75
4388 4683 2.419673 CTCAATGCCACGACATGCTTTA 59.580 45.455 0.00 0.00 0.00 1.85
4389 4684 1.200716 CTCAATGCCACGACATGCTTT 59.799 47.619 0.00 0.00 0.00 3.51
4391 4686 1.028330 CCTCAATGCCACGACATGCT 61.028 55.000 0.00 0.00 0.00 3.79
4394 4689 3.909662 GCCTCAATGCCACGACAT 58.090 55.556 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.