Multiple sequence alignment - TraesCS1B01G247000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G247000 chr1B 100.000 4226 0 0 1 4226 437554929 437550704 0.000000e+00 7805.0
1 TraesCS1B01G247000 chr1B 97.710 262 5 1 246 506 268592162 268592423 2.320000e-122 449.0
2 TraesCS1B01G247000 chr1B 97.701 261 5 1 1 261 268588602 268588861 8.330000e-122 448.0
3 TraesCS1B01G247000 chr1D 93.219 1814 89 17 2428 4226 324746339 324744545 0.000000e+00 2638.0
4 TraesCS1B01G247000 chr1D 95.677 347 13 1 854 1200 324748171 324747827 1.330000e-154 556.0
5 TraesCS1B01G247000 chr1D 81.193 553 42 22 1514 2065 324747702 324747211 5.120000e-104 388.0
6 TraesCS1B01G247000 chr1D 89.831 118 10 1 1315 1432 324747816 324747701 2.630000e-32 150.0
7 TraesCS1B01G247000 chr1D 80.263 228 15 15 642 864 324754047 324753845 1.220000e-30 145.0
8 TraesCS1B01G247000 chr1A 95.908 1173 38 4 2550 3721 419480456 419481619 0.000000e+00 1892.0
9 TraesCS1B01G247000 chr1A 96.246 666 19 4 772 1433 419478934 419479597 0.000000e+00 1086.0
10 TraesCS1B01G247000 chr1A 95.956 544 18 2 1465 2005 419479870 419480412 0.000000e+00 880.0
11 TraesCS1B01G247000 chr1A 95.000 480 17 3 3750 4226 419482746 419483221 0.000000e+00 747.0
12 TraesCS1B01G247000 chr1A 84.906 106 4 4 669 768 419443234 419443333 3.480000e-16 97.1
13 TraesCS1B01G247000 chr1A 100.000 29 0 0 1487 1515 500969982 500969954 2.000000e-03 54.7
14 TraesCS1B01G247000 chr4D 86.411 574 56 10 1 572 24095227 24095780 3.610000e-170 608.0
15 TraesCS1B01G247000 chr4D 86.063 574 58 10 1 572 215178160 215177607 7.820000e-167 597.0
16 TraesCS1B01G247000 chr6D 86.063 574 58 11 1 572 291686413 291686966 7.820000e-167 597.0
17 TraesCS1B01G247000 chr5D 85.913 575 58 11 1 572 108543283 108542729 3.640000e-165 592.0
18 TraesCS1B01G247000 chr5A 82.692 572 60 16 4 572 294613225 294613760 4.950000e-129 472.0
19 TraesCS1B01G247000 chr3A 80.789 380 52 15 2435 2802 57893966 57893596 1.160000e-70 278.0
20 TraesCS1B01G247000 chr3D 79.576 377 58 12 2435 2802 46474090 46473724 7.010000e-63 252.0
21 TraesCS1B01G247000 chr6B 84.416 77 8 4 1441 1515 408686100 408686026 5.860000e-09 73.1
22 TraesCS1B01G247000 chr6B 84.211 76 8 4 1442 1515 448974392 448974319 2.110000e-08 71.3
23 TraesCS1B01G247000 chrUn 97.059 34 1 0 1485 1518 75207157 75207124 1.640000e-04 58.4
24 TraesCS1B01G247000 chr3B 92.683 41 2 1 2424 2464 72485829 72485790 1.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G247000 chr1B 437550704 437554929 4225 True 7805.00 7805 100.0000 1 4226 1 chr1B.!!$R1 4225
1 TraesCS1B01G247000 chr1B 268588602 268592423 3821 False 448.50 449 97.7055 1 506 2 chr1B.!!$F1 505
2 TraesCS1B01G247000 chr1D 324744545 324748171 3626 True 933.00 2638 89.9800 854 4226 4 chr1D.!!$R2 3372
3 TraesCS1B01G247000 chr1A 419478934 419483221 4287 False 1151.25 1892 95.7775 772 4226 4 chr1A.!!$F2 3454
4 TraesCS1B01G247000 chr4D 24095227 24095780 553 False 608.00 608 86.4110 1 572 1 chr4D.!!$F1 571
5 TraesCS1B01G247000 chr4D 215177607 215178160 553 True 597.00 597 86.0630 1 572 1 chr4D.!!$R1 571
6 TraesCS1B01G247000 chr6D 291686413 291686966 553 False 597.00 597 86.0630 1 572 1 chr6D.!!$F1 571
7 TraesCS1B01G247000 chr5D 108542729 108543283 554 True 592.00 592 85.9130 1 572 1 chr5D.!!$R1 571
8 TraesCS1B01G247000 chr5A 294613225 294613760 535 False 472.00 472 82.6920 4 572 1 chr5A.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 4042 0.108615 CTGGACGAGCCTTCACGATT 60.109 55.0 0.00 0.0 37.63 3.34 F
775 4096 0.109532 TTGCGGACAGTTGAATCCCA 59.890 50.0 0.00 0.0 0.00 4.37 F
2115 5716 0.394352 CCCCCTGAATTTCACCGGAG 60.394 60.0 9.46 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 5723 0.030092 TGGGAGATAGGGGGTGAAGG 60.030 60.0 0.0 0.0 0.0 3.46 R
2125 5726 0.193574 GGATGGGAGATAGGGGGTGA 59.806 60.0 0.0 0.0 0.0 4.02 R
3243 7393 0.107703 TGCATAGCCCGTCCTTTGAG 60.108 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 247 7.968014 TGGAGCTGATGATATATACACTCAT 57.032 36.000 0.00 0.00 32.46 2.90
382 3700 0.601046 CATATCGGCCGAGCACACAT 60.601 55.000 33.87 17.23 0.00 3.21
552 3873 8.367911 TGATGATAACTGGATAGATACCACAAC 58.632 37.037 0.00 0.00 33.57 3.32
581 3902 5.734855 TTTTTCTCACTTTCCGACTCTTG 57.265 39.130 0.00 0.00 0.00 3.02
582 3903 3.386768 TTCTCACTTTCCGACTCTTGG 57.613 47.619 0.00 0.00 0.00 3.61
583 3904 2.317040 TCTCACTTTCCGACTCTTGGT 58.683 47.619 0.00 0.00 0.00 3.67
584 3905 2.698797 TCTCACTTTCCGACTCTTGGTT 59.301 45.455 0.00 0.00 0.00 3.67
585 3906 3.060602 CTCACTTTCCGACTCTTGGTTC 58.939 50.000 0.00 0.00 0.00 3.62
586 3907 1.792949 CACTTTCCGACTCTTGGTTCG 59.207 52.381 0.00 0.00 0.00 3.95
587 3908 1.684983 ACTTTCCGACTCTTGGTTCGA 59.315 47.619 0.00 0.00 0.00 3.71
588 3909 2.299297 ACTTTCCGACTCTTGGTTCGAT 59.701 45.455 0.00 0.00 0.00 3.59
589 3910 2.649331 TTCCGACTCTTGGTTCGATC 57.351 50.000 0.00 0.00 0.00 3.69
590 3911 0.450583 TCCGACTCTTGGTTCGATCG 59.549 55.000 9.36 9.36 0.00 3.69
591 3912 0.450583 CCGACTCTTGGTTCGATCGA 59.549 55.000 15.15 15.15 0.00 3.59
592 3913 1.135489 CCGACTCTTGGTTCGATCGAA 60.135 52.381 25.96 25.96 0.00 3.71
593 3914 2.592194 CGACTCTTGGTTCGATCGAAA 58.408 47.619 30.61 14.90 35.75 3.46
594 3915 2.341760 CGACTCTTGGTTCGATCGAAAC 59.658 50.000 33.58 33.58 41.83 2.78
595 3916 3.576648 GACTCTTGGTTCGATCGAAACT 58.423 45.455 37.41 22.66 41.98 2.66
596 3917 3.988517 GACTCTTGGTTCGATCGAAACTT 59.011 43.478 37.41 20.97 41.98 2.66
597 3918 4.377897 ACTCTTGGTTCGATCGAAACTTT 58.622 39.130 37.41 19.26 41.98 2.66
598 3919 5.535333 ACTCTTGGTTCGATCGAAACTTTA 58.465 37.500 37.41 24.47 41.98 1.85
599 3920 6.164176 ACTCTTGGTTCGATCGAAACTTTAT 58.836 36.000 37.41 21.07 41.98 1.40
600 3921 6.090898 ACTCTTGGTTCGATCGAAACTTTATG 59.909 38.462 37.41 26.42 41.98 1.90
601 3922 6.160684 TCTTGGTTCGATCGAAACTTTATGA 58.839 36.000 37.41 24.58 41.98 2.15
602 3923 6.816640 TCTTGGTTCGATCGAAACTTTATGAT 59.183 34.615 37.41 0.00 41.98 2.45
603 3924 6.978343 TGGTTCGATCGAAACTTTATGATT 57.022 33.333 37.41 0.00 41.98 2.57
604 3925 7.372451 TGGTTCGATCGAAACTTTATGATTT 57.628 32.000 37.41 0.00 41.98 2.17
605 3926 7.812648 TGGTTCGATCGAAACTTTATGATTTT 58.187 30.769 37.41 0.00 41.98 1.82
606 3927 7.960738 TGGTTCGATCGAAACTTTATGATTTTC 59.039 33.333 37.41 18.65 41.98 2.29
607 3928 7.428472 GGTTCGATCGAAACTTTATGATTTTCC 59.572 37.037 33.10 20.01 38.67 3.13
608 3929 7.843490 TCGATCGAAACTTTATGATTTTCCT 57.157 32.000 16.99 0.00 0.00 3.36
609 3930 7.906160 TCGATCGAAACTTTATGATTTTCCTC 58.094 34.615 16.99 0.00 0.00 3.71
610 3931 7.011109 TCGATCGAAACTTTATGATTTTCCTCC 59.989 37.037 16.99 0.00 0.00 4.30
611 3932 6.753107 TCGAAACTTTATGATTTTCCTCCC 57.247 37.500 0.00 0.00 0.00 4.30
612 3933 5.353123 TCGAAACTTTATGATTTTCCTCCCG 59.647 40.000 0.00 0.00 0.00 5.14
613 3934 5.123344 CGAAACTTTATGATTTTCCTCCCGT 59.877 40.000 0.00 0.00 0.00 5.28
614 3935 6.349033 CGAAACTTTATGATTTTCCTCCCGTT 60.349 38.462 0.00 0.00 0.00 4.44
615 3936 5.897377 ACTTTATGATTTTCCTCCCGTTG 57.103 39.130 0.00 0.00 0.00 4.10
616 3937 4.157840 ACTTTATGATTTTCCTCCCGTTGC 59.842 41.667 0.00 0.00 0.00 4.17
617 3938 2.214376 ATGATTTTCCTCCCGTTGCA 57.786 45.000 0.00 0.00 0.00 4.08
618 3939 1.988293 TGATTTTCCTCCCGTTGCAA 58.012 45.000 0.00 0.00 0.00 4.08
619 3940 2.311463 TGATTTTCCTCCCGTTGCAAA 58.689 42.857 0.00 0.00 0.00 3.68
620 3941 2.295909 TGATTTTCCTCCCGTTGCAAAG 59.704 45.455 0.00 2.09 0.00 2.77
621 3942 0.387565 TTTTCCTCCCGTTGCAAAGC 59.612 50.000 0.00 0.00 0.00 3.51
622 3943 0.753479 TTTCCTCCCGTTGCAAAGCA 60.753 50.000 0.00 0.00 36.47 3.91
623 3944 1.452145 TTCCTCCCGTTGCAAAGCAC 61.452 55.000 0.00 0.00 38.71 4.40
624 3945 2.252260 CTCCCGTTGCAAAGCACG 59.748 61.111 0.00 0.05 38.71 5.34
625 3946 2.203084 TCCCGTTGCAAAGCACGA 60.203 55.556 10.13 1.20 38.71 4.35
626 3947 2.175184 CTCCCGTTGCAAAGCACGAG 62.175 60.000 10.13 8.62 38.71 4.18
627 3948 2.542907 CCCGTTGCAAAGCACGAGT 61.543 57.895 10.13 0.00 38.71 4.18
628 3949 1.082756 CCGTTGCAAAGCACGAGTC 60.083 57.895 10.13 0.00 38.71 3.36
629 3950 1.498865 CCGTTGCAAAGCACGAGTCT 61.499 55.000 10.13 0.00 38.71 3.24
630 3951 0.304705 CGTTGCAAAGCACGAGTCTT 59.695 50.000 0.00 0.00 38.71 3.01
631 3952 1.268032 CGTTGCAAAGCACGAGTCTTT 60.268 47.619 0.00 0.00 38.71 2.52
632 3953 2.791158 CGTTGCAAAGCACGAGTCTTTT 60.791 45.455 0.00 0.00 38.71 2.27
633 3954 3.179048 GTTGCAAAGCACGAGTCTTTTT 58.821 40.909 0.00 0.00 38.71 1.94
634 3955 2.796304 TGCAAAGCACGAGTCTTTTTG 58.204 42.857 0.00 0.00 31.71 2.44
635 3956 1.518515 GCAAAGCACGAGTCTTTTTGC 59.481 47.619 11.83 11.83 44.33 3.68
637 3958 3.548014 GCAAAGCACGAGTCTTTTTGCTA 60.548 43.478 16.48 0.00 44.57 3.49
638 3959 4.214437 CAAAGCACGAGTCTTTTTGCTAG 58.786 43.478 6.01 0.00 44.57 3.42
639 3960 3.113260 AGCACGAGTCTTTTTGCTAGT 57.887 42.857 0.00 0.00 43.51 2.57
640 3961 4.252971 AGCACGAGTCTTTTTGCTAGTA 57.747 40.909 0.00 0.00 43.51 1.82
641 3962 4.628074 AGCACGAGTCTTTTTGCTAGTAA 58.372 39.130 0.00 0.00 43.51 2.24
642 3963 5.054477 AGCACGAGTCTTTTTGCTAGTAAA 58.946 37.500 1.42 1.42 43.51 2.01
643 3964 5.177696 AGCACGAGTCTTTTTGCTAGTAAAG 59.822 40.000 6.11 6.88 43.51 1.85
644 3965 5.176958 GCACGAGTCTTTTTGCTAGTAAAGA 59.823 40.000 6.11 8.84 37.88 2.52
645 3966 6.128526 GCACGAGTCTTTTTGCTAGTAAAGAT 60.129 38.462 15.19 8.29 41.07 2.40
646 3967 7.063074 GCACGAGTCTTTTTGCTAGTAAAGATA 59.937 37.037 15.19 0.67 41.07 1.98
647 3968 8.922676 CACGAGTCTTTTTGCTAGTAAAGATAA 58.077 33.333 15.19 5.02 41.07 1.75
648 3969 9.485206 ACGAGTCTTTTTGCTAGTAAAGATAAA 57.515 29.630 15.19 4.75 41.07 1.40
649 3970 9.959775 CGAGTCTTTTTGCTAGTAAAGATAAAG 57.040 33.333 15.19 11.98 41.07 1.85
680 4001 9.661563 ATTGATACAGATACAAACGTTTAAGGA 57.338 29.630 14.20 0.00 0.00 3.36
681 4002 9.491675 TTGATACAGATACAAACGTTTAAGGAA 57.508 29.630 14.20 0.00 0.00 3.36
682 4003 9.491675 TGATACAGATACAAACGTTTAAGGAAA 57.508 29.630 14.20 0.00 0.00 3.13
683 4004 9.968743 GATACAGATACAAACGTTTAAGGAAAG 57.031 33.333 14.20 1.83 0.00 2.62
684 4005 9.715121 ATACAGATACAAACGTTTAAGGAAAGA 57.285 29.630 14.20 0.00 0.00 2.52
685 4006 8.441312 ACAGATACAAACGTTTAAGGAAAGAA 57.559 30.769 14.20 0.00 0.00 2.52
686 4007 8.895737 ACAGATACAAACGTTTAAGGAAAGAAA 58.104 29.630 14.20 0.00 0.00 2.52
687 4008 9.724839 CAGATACAAACGTTTAAGGAAAGAAAA 57.275 29.630 14.20 0.00 0.00 2.29
691 4012 8.415192 ACAAACGTTTAAGGAAAGAAAAATCC 57.585 30.769 14.20 0.00 35.88 3.01
693 4014 9.738832 CAAACGTTTAAGGAAAGAAAAATCCTA 57.261 29.630 14.20 0.00 45.33 2.94
694 4015 9.961265 AAACGTTTAAGGAAAGAAAAATCCTAG 57.039 29.630 12.83 0.00 45.33 3.02
695 4016 8.913487 ACGTTTAAGGAAAGAAAAATCCTAGA 57.087 30.769 0.00 0.00 45.33 2.43
696 4017 9.000486 ACGTTTAAGGAAAGAAAAATCCTAGAG 58.000 33.333 0.00 0.00 45.33 2.43
697 4018 9.000486 CGTTTAAGGAAAGAAAAATCCTAGAGT 58.000 33.333 0.00 0.00 45.33 3.24
699 4020 8.773404 TTAAGGAAAGAAAAATCCTAGAGTCG 57.227 34.615 0.00 0.00 45.33 4.18
700 4021 6.361768 AGGAAAGAAAAATCCTAGAGTCGT 57.638 37.500 0.00 0.00 44.24 4.34
701 4022 6.770542 AGGAAAGAAAAATCCTAGAGTCGTT 58.229 36.000 0.00 0.00 44.24 3.85
702 4023 6.874664 AGGAAAGAAAAATCCTAGAGTCGTTC 59.125 38.462 0.00 0.00 44.24 3.95
703 4024 6.874664 GGAAAGAAAAATCCTAGAGTCGTTCT 59.125 38.462 0.00 0.00 40.06 3.01
704 4025 7.148557 GGAAAGAAAAATCCTAGAGTCGTTCTG 60.149 40.741 0.00 0.00 36.61 3.02
705 4026 5.725362 AGAAAAATCCTAGAGTCGTTCTGG 58.275 41.667 0.00 0.47 36.61 3.86
706 4027 5.480772 AGAAAAATCCTAGAGTCGTTCTGGA 59.519 40.000 0.00 8.21 36.56 3.86
707 4028 4.722361 AAATCCTAGAGTCGTTCTGGAC 57.278 45.455 0.00 0.00 36.56 4.02
717 4038 2.828933 GTTCTGGACGAGCCTTCAC 58.171 57.895 0.00 0.00 37.63 3.18
718 4039 1.009389 GTTCTGGACGAGCCTTCACG 61.009 60.000 0.00 0.00 37.63 4.35
719 4040 1.176619 TTCTGGACGAGCCTTCACGA 61.177 55.000 0.00 0.00 37.63 4.35
720 4041 0.965866 TCTGGACGAGCCTTCACGAT 60.966 55.000 0.00 0.00 37.63 3.73
721 4042 0.108615 CTGGACGAGCCTTCACGATT 60.109 55.000 0.00 0.00 37.63 3.34
722 4043 0.320374 TGGACGAGCCTTCACGATTT 59.680 50.000 0.00 0.00 37.63 2.17
723 4044 1.270625 TGGACGAGCCTTCACGATTTT 60.271 47.619 0.00 0.00 37.63 1.82
724 4045 1.804748 GGACGAGCCTTCACGATTTTT 59.195 47.619 0.00 0.00 0.00 1.94
761 4082 1.745264 TTTTTCAAGGGGCTTGCGG 59.255 52.632 0.00 0.00 40.84 5.69
762 4083 0.757188 TTTTTCAAGGGGCTTGCGGA 60.757 50.000 0.00 0.00 40.84 5.54
763 4084 1.460273 TTTTCAAGGGGCTTGCGGAC 61.460 55.000 0.00 0.00 40.84 4.79
764 4085 2.632602 TTTCAAGGGGCTTGCGGACA 62.633 55.000 0.00 0.00 40.84 4.02
765 4086 3.058160 CAAGGGGCTTGCGGACAG 61.058 66.667 0.00 0.00 34.63 3.51
766 4087 3.570212 AAGGGGCTTGCGGACAGT 61.570 61.111 0.00 0.00 0.00 3.55
767 4088 3.133365 AAGGGGCTTGCGGACAGTT 62.133 57.895 0.00 0.00 0.00 3.16
768 4089 3.365265 GGGGCTTGCGGACAGTTG 61.365 66.667 0.00 0.00 0.00 3.16
769 4090 2.281484 GGGCTTGCGGACAGTTGA 60.281 61.111 0.00 0.00 0.00 3.18
770 4091 1.896660 GGGCTTGCGGACAGTTGAA 60.897 57.895 0.00 0.00 0.00 2.69
771 4092 1.244019 GGGCTTGCGGACAGTTGAAT 61.244 55.000 0.00 0.00 0.00 2.57
772 4093 0.169009 GGCTTGCGGACAGTTGAATC 59.831 55.000 0.00 0.00 0.00 2.52
773 4094 0.169009 GCTTGCGGACAGTTGAATCC 59.831 55.000 0.00 0.00 0.00 3.01
774 4095 0.804989 CTTGCGGACAGTTGAATCCC 59.195 55.000 0.00 0.00 0.00 3.85
775 4096 0.109532 TTGCGGACAGTTGAATCCCA 59.890 50.000 0.00 0.00 0.00 4.37
776 4097 0.109532 TGCGGACAGTTGAATCCCAA 59.890 50.000 0.00 0.00 0.00 4.12
777 4098 1.243902 GCGGACAGTTGAATCCCAAA 58.756 50.000 0.00 0.00 36.36 3.28
860 4182 2.436417 CCAGCCCGAATCAAAGAAGAA 58.564 47.619 0.00 0.00 0.00 2.52
896 4218 3.555966 GGCCAAATCAGCACTTACCTAT 58.444 45.455 0.00 0.00 0.00 2.57
897 4219 4.445735 GGGCCAAATCAGCACTTACCTATA 60.446 45.833 4.39 0.00 0.00 1.31
905 4227 5.972698 TCAGCACTTACCTATAATCCCCTA 58.027 41.667 0.00 0.00 0.00 3.53
961 4283 3.691342 CCGTTCTCCTGGCGACCA 61.691 66.667 0.00 0.00 0.00 4.02
1181 4503 0.672711 GGCAAGGTTCGTCTACCCAC 60.673 60.000 0.00 0.00 39.08 4.61
1203 4525 1.064463 CCTTTCCAGCTCCCATTAGCA 60.064 52.381 0.00 0.00 45.30 3.49
1319 4643 3.241156 AGTATCTCATCTGATGCTGCCT 58.759 45.455 12.78 2.50 37.85 4.75
1344 4668 2.035674 CCATTCGATTTCGTCTCGTTCG 60.036 50.000 0.00 0.00 40.80 3.95
1433 4757 3.689347 TCGGTGTGTGGTATGTACTACT 58.311 45.455 7.94 0.00 38.35 2.57
1434 4758 3.691118 TCGGTGTGTGGTATGTACTACTC 59.309 47.826 7.94 5.34 38.35 2.59
1435 4759 3.181493 CGGTGTGTGGTATGTACTACTCC 60.181 52.174 7.94 6.97 38.35 3.85
1436 4760 3.131755 GGTGTGTGGTATGTACTACTCCC 59.868 52.174 7.94 5.04 38.35 4.30
1437 4761 4.021916 GTGTGTGGTATGTACTACTCCCT 58.978 47.826 7.94 0.00 38.35 4.20
1438 4762 4.097589 GTGTGTGGTATGTACTACTCCCTC 59.902 50.000 7.94 0.00 38.35 4.30
1439 4763 3.635836 GTGTGGTATGTACTACTCCCTCC 59.364 52.174 7.94 0.00 38.35 4.30
1447 4771 0.697079 ACTACTCCCTCCGTGTCTCA 59.303 55.000 0.00 0.00 0.00 3.27
1455 4779 2.353803 CCCTCCGTGTCTCAACTTTAGG 60.354 54.545 0.00 0.00 0.00 2.69
1458 4782 2.960384 TCCGTGTCTCAACTTTAGGACA 59.040 45.455 0.00 0.00 36.52 4.02
1459 4783 3.385433 TCCGTGTCTCAACTTTAGGACAA 59.615 43.478 0.00 0.00 39.83 3.18
1461 4785 4.369182 CGTGTCTCAACTTTAGGACAACT 58.631 43.478 0.00 0.00 39.83 3.16
1463 4787 5.293569 CGTGTCTCAACTTTAGGACAACTTT 59.706 40.000 0.00 0.00 39.83 2.66
1541 5113 1.664151 CCCCGCTGTCTTTATTCGAAC 59.336 52.381 0.00 0.00 0.00 3.95
1617 5192 3.295093 TCTGTCAGGGTTTTGATTTGCA 58.705 40.909 0.00 0.00 0.00 4.08
1875 5451 9.630098 CAAGCTGATTACACTTTAAATGTCAAT 57.370 29.630 6.56 6.15 0.00 2.57
1898 5474 2.683968 TCGAGTTCTATGTGCCACAAC 58.316 47.619 0.00 0.00 0.00 3.32
1944 5520 3.864160 GCCAAGATTTCCCATTCGCAAAA 60.864 43.478 0.00 0.00 0.00 2.44
2008 5609 4.558226 AGTTGGCTGACATCTGTTGATA 57.442 40.909 0.00 0.00 0.00 2.15
2038 5639 7.148171 GCCTAGGTGATTTTAGCCATGAATATC 60.148 40.741 11.31 0.00 0.00 1.63
2039 5640 7.337942 CCTAGGTGATTTTAGCCATGAATATCC 59.662 40.741 0.00 0.00 0.00 2.59
2052 5653 6.658391 GCCATGAATATCCTAAAGAGAATGCT 59.342 38.462 0.00 0.00 0.00 3.79
2065 5666 6.976934 AAGAGAATGCTTTGTCCCTAAAAA 57.023 33.333 5.93 0.00 0.00 1.94
2067 5668 7.544804 AGAGAATGCTTTGTCCCTAAAAATT 57.455 32.000 5.93 0.00 0.00 1.82
2069 5670 7.874528 AGAGAATGCTTTGTCCCTAAAAATTTG 59.125 33.333 5.93 0.00 0.00 2.32
2070 5671 7.734942 AGAATGCTTTGTCCCTAAAAATTTGA 58.265 30.769 0.00 0.00 0.00 2.69
2071 5672 8.377799 AGAATGCTTTGTCCCTAAAAATTTGAT 58.622 29.630 0.00 0.00 0.00 2.57
2072 5673 9.651913 GAATGCTTTGTCCCTAAAAATTTGATA 57.348 29.630 0.00 0.00 0.00 2.15
2076 5677 9.098355 GCTTTGTCCCTAAAAATTTGATAATCC 57.902 33.333 0.00 0.00 0.00 3.01
2102 5703 4.848562 GTTTAACTGAAACTTCCCCCTG 57.151 45.455 0.00 0.00 43.58 4.45
2104 5705 4.799715 TTAACTGAAACTTCCCCCTGAA 57.200 40.909 0.00 0.00 0.00 3.02
2105 5706 3.903530 AACTGAAACTTCCCCCTGAAT 57.096 42.857 0.00 0.00 31.06 2.57
2106 5707 3.903530 ACTGAAACTTCCCCCTGAATT 57.096 42.857 0.00 0.00 31.06 2.17
2107 5708 4.199002 ACTGAAACTTCCCCCTGAATTT 57.801 40.909 0.00 0.00 31.06 1.82
2108 5709 4.152647 ACTGAAACTTCCCCCTGAATTTC 58.847 43.478 0.00 0.00 34.53 2.17
2110 5711 3.895041 TGAAACTTCCCCCTGAATTTCAC 59.105 43.478 0.00 0.00 36.57 3.18
2111 5712 2.604912 ACTTCCCCCTGAATTTCACC 57.395 50.000 0.00 0.00 31.06 4.02
2112 5713 1.271926 ACTTCCCCCTGAATTTCACCG 60.272 52.381 0.00 0.00 31.06 4.94
2114 5715 0.842905 TCCCCCTGAATTTCACCGGA 60.843 55.000 9.46 3.96 0.00 5.14
2115 5716 0.394352 CCCCCTGAATTTCACCGGAG 60.394 60.000 9.46 0.00 0.00 4.63
2117 5718 1.453155 CCCTGAATTTCACCGGAGTG 58.547 55.000 9.46 0.00 46.00 3.51
2118 5719 1.453155 CCTGAATTTCACCGGAGTGG 58.547 55.000 9.46 0.00 44.64 4.00
2119 5720 1.453155 CTGAATTTCACCGGAGTGGG 58.547 55.000 9.46 0.00 44.64 4.61
2120 5721 0.608035 TGAATTTCACCGGAGTGGGC 60.608 55.000 9.46 0.00 44.64 5.36
2121 5722 1.304134 AATTTCACCGGAGTGGGCC 60.304 57.895 9.46 0.00 44.64 5.80
2122 5723 2.781431 AATTTCACCGGAGTGGGCCC 62.781 60.000 17.59 17.59 44.64 5.80
2128 5729 4.410400 CGGAGTGGGCCCCTTCAC 62.410 72.222 22.27 11.14 0.00 3.18
2134 5735 4.771745 GGGCCCCTTCACCCCCTA 62.772 72.222 12.23 0.00 40.56 3.53
2136 5737 2.461739 GGCCCCTTCACCCCCTATC 61.462 68.421 0.00 0.00 0.00 2.08
2137 5738 1.386057 GCCCCTTCACCCCCTATCT 60.386 63.158 0.00 0.00 0.00 1.98
2138 5739 1.419720 GCCCCTTCACCCCCTATCTC 61.420 65.000 0.00 0.00 0.00 2.75
2139 5740 0.768609 CCCCTTCACCCCCTATCTCC 60.769 65.000 0.00 0.00 0.00 3.71
2140 5741 0.768609 CCCTTCACCCCCTATCTCCC 60.769 65.000 0.00 0.00 0.00 4.30
2141 5742 0.030092 CCTTCACCCCCTATCTCCCA 60.030 60.000 0.00 0.00 0.00 4.37
2142 5743 1.416608 CCTTCACCCCCTATCTCCCAT 60.417 57.143 0.00 0.00 0.00 4.00
2143 5744 1.981495 CTTCACCCCCTATCTCCCATC 59.019 57.143 0.00 0.00 0.00 3.51
2149 5750 3.148795 ACCCCCTATCTCCCATCCTAATT 59.851 47.826 0.00 0.00 0.00 1.40
2151 5752 4.515538 CCCCCTATCTCCCATCCTAATTCT 60.516 50.000 0.00 0.00 0.00 2.40
2152 5753 5.104409 CCCCTATCTCCCATCCTAATTCTT 58.896 45.833 0.00 0.00 0.00 2.52
2153 5754 5.190726 CCCCTATCTCCCATCCTAATTCTTC 59.809 48.000 0.00 0.00 0.00 2.87
2154 5755 5.787494 CCCTATCTCCCATCCTAATTCTTCA 59.213 44.000 0.00 0.00 0.00 3.02
2155 5756 6.296145 CCCTATCTCCCATCCTAATTCTTCAC 60.296 46.154 0.00 0.00 0.00 3.18
2156 5757 4.672587 TCTCCCATCCTAATTCTTCACG 57.327 45.455 0.00 0.00 0.00 4.35
2157 5758 4.030913 TCTCCCATCCTAATTCTTCACGT 58.969 43.478 0.00 0.00 0.00 4.49
2159 5760 3.772572 TCCCATCCTAATTCTTCACGTCA 59.227 43.478 0.00 0.00 0.00 4.35
2160 5761 4.122776 CCCATCCTAATTCTTCACGTCAG 58.877 47.826 0.00 0.00 0.00 3.51
2163 5764 6.338146 CCATCCTAATTCTTCACGTCAGTTA 58.662 40.000 0.00 0.00 0.00 2.24
2164 5765 6.477033 CCATCCTAATTCTTCACGTCAGTTAG 59.523 42.308 0.00 0.00 0.00 2.34
2165 5766 6.585695 TCCTAATTCTTCACGTCAGTTAGT 57.414 37.500 0.00 0.00 0.00 2.24
2166 5767 6.618811 TCCTAATTCTTCACGTCAGTTAGTC 58.381 40.000 0.00 0.00 0.00 2.59
2167 5768 5.805994 CCTAATTCTTCACGTCAGTTAGTCC 59.194 44.000 0.00 0.00 0.00 3.85
2168 5769 2.983402 TCTTCACGTCAGTTAGTCCG 57.017 50.000 0.00 0.00 0.00 4.79
2171 5772 3.814842 TCTTCACGTCAGTTAGTCCGTTA 59.185 43.478 0.00 0.00 0.00 3.18
2172 5773 4.275689 TCTTCACGTCAGTTAGTCCGTTAA 59.724 41.667 0.00 0.00 0.00 2.01
2173 5774 4.566545 TCACGTCAGTTAGTCCGTTAAA 57.433 40.909 0.00 0.00 0.00 1.52
2174 5775 5.125100 TCACGTCAGTTAGTCCGTTAAAT 57.875 39.130 0.00 0.00 0.00 1.40
2175 5776 5.156355 TCACGTCAGTTAGTCCGTTAAATC 58.844 41.667 0.00 0.00 0.00 2.17
2177 5778 5.060569 CACGTCAGTTAGTCCGTTAAATCTG 59.939 44.000 0.00 0.00 0.00 2.90
2181 5782 7.487189 CGTCAGTTAGTCCGTTAAATCTGTAAT 59.513 37.037 0.00 0.00 0.00 1.89
2182 5783 9.148104 GTCAGTTAGTCCGTTAAATCTGTAATT 57.852 33.333 0.00 0.00 0.00 1.40
2183 5784 9.715121 TCAGTTAGTCCGTTAAATCTGTAATTT 57.285 29.630 0.00 0.00 0.00 1.82
2184 5785 9.755064 CAGTTAGTCCGTTAAATCTGTAATTTG 57.245 33.333 0.00 0.00 0.00 2.32
2185 5786 9.498176 AGTTAGTCCGTTAAATCTGTAATTTGT 57.502 29.630 0.00 0.00 0.00 2.83
2189 5790 9.148104 AGTCCGTTAAATCTGTAATTTGTACTC 57.852 33.333 0.00 0.00 0.00 2.59
2190 5791 8.385858 GTCCGTTAAATCTGTAATTTGTACTCC 58.614 37.037 0.00 0.00 0.00 3.85
2191 5792 8.095792 TCCGTTAAATCTGTAATTTGTACTCCA 58.904 33.333 0.00 0.00 0.00 3.86
2192 5793 8.889717 CCGTTAAATCTGTAATTTGTACTCCAT 58.110 33.333 0.00 0.00 0.00 3.41
2201 5802 9.632807 CTGTAATTTGTACTCCATAGATCTAGC 57.367 37.037 8.70 0.00 0.00 3.42
2202 5803 9.143155 TGTAATTTGTACTCCATAGATCTAGCA 57.857 33.333 8.70 0.00 0.00 3.49
2207 5808 8.941995 TTGTACTCCATAGATCTAGCATTACT 57.058 34.615 8.70 0.00 0.00 2.24
2224 6362 7.213678 AGCATTACTCTTAATCTAGACTTGGC 58.786 38.462 0.00 0.00 0.00 4.52
2229 6367 6.410540 ACTCTTAATCTAGACTTGGCTTTGG 58.589 40.000 0.00 0.00 0.00 3.28
2246 6384 6.220726 GCTTTGGCCTCAAATATTTCCTTA 57.779 37.500 3.32 0.00 41.45 2.69
2253 6391 7.838696 TGGCCTCAAATATTTCCTTATTCTGAA 59.161 33.333 3.32 0.00 0.00 3.02
2264 6402 5.790593 TCCTTATTCTGAATATACGCCCAC 58.209 41.667 10.68 0.00 0.00 4.61
2267 6405 6.485313 CCTTATTCTGAATATACGCCCACAAA 59.515 38.462 10.68 0.00 0.00 2.83
2268 6406 7.012894 CCTTATTCTGAATATACGCCCACAAAA 59.987 37.037 10.68 0.00 0.00 2.44
2286 6424 4.099419 ACAAAATTGTTCCTGGTTCTGGAC 59.901 41.667 0.00 0.00 38.47 4.02
2305 6443 3.559171 GGACATGCCCTTTCTGTCAGTTA 60.559 47.826 0.00 0.00 40.80 2.24
2315 6453 3.530265 TCTGTCAGTTAACCGTGTGTT 57.470 42.857 0.88 0.00 41.11 3.32
2329 6467 6.770746 ACCGTGTGTTGATCTATAAGTAGT 57.229 37.500 0.00 0.00 0.00 2.73
2344 6482 9.383519 TCTATAAGTAGTGATTGAAGCTTTTGG 57.616 33.333 0.00 0.00 0.00 3.28
2389 6527 4.688021 CAGAAATACCTCTGTGTAGCTCC 58.312 47.826 0.00 0.00 38.43 4.70
2391 6529 4.160626 AGAAATACCTCTGTGTAGCTCCAC 59.839 45.833 1.83 1.83 35.86 4.02
2392 6530 2.901338 TACCTCTGTGTAGCTCCACT 57.099 50.000 11.03 0.00 36.30 4.00
2393 6531 1.551452 ACCTCTGTGTAGCTCCACTC 58.449 55.000 11.03 0.00 36.30 3.51
2395 6533 1.476085 CCTCTGTGTAGCTCCACTCTG 59.524 57.143 11.03 1.73 36.30 3.35
2397 6535 3.348119 CTCTGTGTAGCTCCACTCTGTA 58.652 50.000 11.03 0.00 36.30 2.74
2399 6537 3.948473 TCTGTGTAGCTCCACTCTGTATC 59.052 47.826 11.03 0.00 36.30 2.24
2400 6538 3.024547 TGTGTAGCTCCACTCTGTATCC 58.975 50.000 11.03 0.00 36.30 2.59
2401 6539 2.362717 GTGTAGCTCCACTCTGTATCCC 59.637 54.545 1.54 0.00 32.50 3.85
2402 6540 2.024369 TGTAGCTCCACTCTGTATCCCA 60.024 50.000 0.00 0.00 0.00 4.37
2403 6541 2.485966 AGCTCCACTCTGTATCCCAT 57.514 50.000 0.00 0.00 0.00 4.00
2404 6542 2.769209 AGCTCCACTCTGTATCCCATT 58.231 47.619 0.00 0.00 0.00 3.16
2405 6543 3.928754 AGCTCCACTCTGTATCCCATTA 58.071 45.455 0.00 0.00 0.00 1.90
2406 6544 3.900601 AGCTCCACTCTGTATCCCATTAG 59.099 47.826 0.00 0.00 0.00 1.73
2407 6545 3.007398 GCTCCACTCTGTATCCCATTAGG 59.993 52.174 0.00 0.00 0.00 2.69
2434 6572 5.773176 ACCGGAAACAAATAGAAAATGAGGT 59.227 36.000 9.46 0.00 0.00 3.85
2464 6602 4.846779 TTGCTGGACTGGTTAATGAAAC 57.153 40.909 0.00 0.00 37.36 2.78
2483 6621 8.977267 ATGAAACCCATGATTTTTCTTTTTCA 57.023 26.923 0.00 0.00 35.54 2.69
2486 6624 9.502145 GAAACCCATGATTTTTCTTTTTCAAAC 57.498 29.630 0.00 0.00 0.00 2.93
2498 6637 6.096673 TCTTTTTCAAACCCAGGCTTATTC 57.903 37.500 0.00 0.00 0.00 1.75
2531 6670 4.781934 ACTTGCTGTTCTTAGTGGTTTCT 58.218 39.130 0.00 0.00 0.00 2.52
2534 6673 6.152831 ACTTGCTGTTCTTAGTGGTTTCTTTT 59.847 34.615 0.00 0.00 0.00 2.27
2536 6675 7.817418 TGCTGTTCTTAGTGGTTTCTTTTAT 57.183 32.000 0.00 0.00 0.00 1.40
2537 6676 8.232913 TGCTGTTCTTAGTGGTTTCTTTTATT 57.767 30.769 0.00 0.00 0.00 1.40
2538 6677 8.134895 TGCTGTTCTTAGTGGTTTCTTTTATTG 58.865 33.333 0.00 0.00 0.00 1.90
2539 6678 7.114953 GCTGTTCTTAGTGGTTTCTTTTATTGC 59.885 37.037 0.00 0.00 0.00 3.56
2540 6679 8.232913 TGTTCTTAGTGGTTTCTTTTATTGCT 57.767 30.769 0.00 0.00 0.00 3.91
2747 6894 3.380004 TGTCACAAACTCACAATCCAACC 59.620 43.478 0.00 0.00 0.00 3.77
2751 6898 4.023291 ACAAACTCACAATCCAACCAGTT 58.977 39.130 0.00 0.00 0.00 3.16
2796 6943 5.011431 CCACTCTATGCTAGATGTCCATGAA 59.989 44.000 0.00 0.00 33.66 2.57
2797 6944 5.925397 CACTCTATGCTAGATGTCCATGAAC 59.075 44.000 0.00 0.00 33.66 3.18
2798 6945 5.126396 TCTATGCTAGATGTCCATGAACG 57.874 43.478 0.00 0.00 0.00 3.95
2799 6946 4.827284 TCTATGCTAGATGTCCATGAACGA 59.173 41.667 0.00 0.00 0.00 3.85
2800 6947 4.613925 ATGCTAGATGTCCATGAACGAT 57.386 40.909 0.00 0.00 0.00 3.73
2801 6948 3.721035 TGCTAGATGTCCATGAACGATG 58.279 45.455 0.00 0.00 0.00 3.84
2802 6949 3.384467 TGCTAGATGTCCATGAACGATGA 59.616 43.478 0.00 0.00 33.31 2.92
2822 6969 5.514274 TGAACCTGATGTTTCCAGTTTTC 57.486 39.130 0.00 0.00 37.29 2.29
2910 7057 1.628846 GGAGCCTTCCCTAAAGTCACA 59.371 52.381 0.00 0.00 37.53 3.58
3006 7156 6.451393 GCGATCAGAGATATTAACAGGAGTT 58.549 40.000 0.00 0.00 41.74 3.01
3064 7214 5.422012 TCAAGGAACAGCATCAGTACATCTA 59.578 40.000 0.00 0.00 0.00 1.98
3072 7222 7.739825 ACAGCATCAGTACATCTATTATGGTT 58.260 34.615 0.00 0.00 0.00 3.67
3090 7240 0.249699 TTGCGGCGGTATACCATCAG 60.250 55.000 21.76 13.44 35.14 2.90
3093 7243 1.337823 GCGGCGGTATACCATCAGATT 60.338 52.381 21.76 0.00 35.14 2.40
3138 7288 0.901827 TGGACTATGTGCACCACGAT 59.098 50.000 15.69 3.27 37.14 3.73
3243 7393 5.179555 GGTCTGAGTTCACCATGTTAGTTTC 59.820 44.000 0.00 0.00 32.33 2.78
3272 7422 1.064505 CGGGCTATGCACTCATTTGTG 59.935 52.381 0.00 0.00 40.62 3.33
3341 7492 2.151202 TCTGTTTCCCGCATGAACTTC 58.849 47.619 0.00 0.00 0.00 3.01
3342 7493 1.879380 CTGTTTCCCGCATGAACTTCA 59.121 47.619 0.00 0.00 0.00 3.02
3356 7507 4.040339 ATGAACTTCATTGGTTTCCAACCC 59.960 41.667 3.23 0.00 46.95 4.11
3447 7598 8.180267 CCTATCAGATAACAAGTTTCTGCAAAG 58.820 37.037 14.63 12.10 37.41 2.77
3528 7679 3.621268 TCTGCAACTCGTATTTGGTATGC 59.379 43.478 0.00 0.00 0.00 3.14
3545 7696 3.436001 GCTTCCTAGCACAGCGTAA 57.564 52.632 0.00 0.00 46.95 3.18
3570 7722 7.384439 TCGCACATATTTTCCATGTAAGAAA 57.616 32.000 0.00 0.00 34.88 2.52
3612 7764 1.199615 GAAGCTTCTCCCTAGTGGCT 58.800 55.000 19.44 0.00 34.78 4.75
3726 7878 2.846206 TGTGGAATTGCTGGGATACTCT 59.154 45.455 0.00 0.00 0.00 3.24
3770 9020 1.475280 TGTACTCAGTACGGTGATGGC 59.525 52.381 10.46 0.00 41.41 4.40
3952 9202 4.263209 TGTGTTTTGGCCGCTGCG 62.263 61.111 16.34 16.34 38.85 5.18
3992 9242 1.804151 TCTTGCAGTCGTTTACATGCC 59.196 47.619 0.00 0.00 37.89 4.40
4137 9387 1.077828 TCTCCCCAGTGTCACAGAGAT 59.922 52.381 5.62 0.00 0.00 2.75
4147 9397 2.266554 GTCACAGAGATGCAGTACAGC 58.733 52.381 2.82 2.82 33.80 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 214 2.923121 TCATCAGCTCCATTTGCCTAC 58.077 47.619 0.00 0.00 0.00 3.18
244 247 4.162131 TGATGCTATCAACTGCTTACCTCA 59.838 41.667 0.00 0.00 36.11 3.86
276 3594 1.003839 TGATCTTCCCACGTGTGCC 60.004 57.895 15.65 0.00 0.00 5.01
277 3595 1.021390 CCTGATCTTCCCACGTGTGC 61.021 60.000 15.65 0.00 0.00 4.57
347 3665 7.012327 CGGCCGATATGATAATCAACCATAAAT 59.988 37.037 24.07 0.00 0.00 1.40
362 3680 1.067416 GTGTGCTCGGCCGATATGA 59.933 57.895 31.19 10.79 0.00 2.15
382 3700 0.740868 GCCTTGATGACAGCAGCGTA 60.741 55.000 0.00 0.00 31.73 4.42
563 3884 2.317040 ACCAAGAGTCGGAAAGTGAGA 58.683 47.619 0.00 0.00 0.00 3.27
564 3885 2.821991 ACCAAGAGTCGGAAAGTGAG 57.178 50.000 0.00 0.00 0.00 3.51
565 3886 2.545113 CGAACCAAGAGTCGGAAAGTGA 60.545 50.000 0.00 0.00 0.00 3.41
566 3887 1.792949 CGAACCAAGAGTCGGAAAGTG 59.207 52.381 0.00 0.00 0.00 3.16
567 3888 1.684983 TCGAACCAAGAGTCGGAAAGT 59.315 47.619 0.00 0.00 0.00 2.66
568 3889 2.433868 TCGAACCAAGAGTCGGAAAG 57.566 50.000 0.00 0.00 0.00 2.62
571 3892 0.450583 CGATCGAACCAAGAGTCGGA 59.549 55.000 10.26 0.00 0.00 4.55
572 3893 0.450583 TCGATCGAACCAAGAGTCGG 59.549 55.000 16.99 0.00 0.00 4.79
573 3894 2.257974 TTCGATCGAACCAAGAGTCG 57.742 50.000 25.96 0.00 0.00 4.18
574 3895 3.576648 AGTTTCGATCGAACCAAGAGTC 58.423 45.455 29.15 12.07 33.41 3.36
575 3896 3.662247 AGTTTCGATCGAACCAAGAGT 57.338 42.857 29.15 14.67 33.41 3.24
576 3897 4.992381 AAAGTTTCGATCGAACCAAGAG 57.008 40.909 29.15 0.00 33.41 2.85
577 3898 6.160684 TCATAAAGTTTCGATCGAACCAAGA 58.839 36.000 29.15 16.97 33.41 3.02
578 3899 6.403333 TCATAAAGTTTCGATCGAACCAAG 57.597 37.500 29.15 15.16 33.41 3.61
579 3900 6.978343 ATCATAAAGTTTCGATCGAACCAA 57.022 33.333 29.15 13.21 33.41 3.67
580 3901 6.978343 AATCATAAAGTTTCGATCGAACCA 57.022 33.333 29.15 13.97 33.41 3.67
581 3902 7.428472 GGAAAATCATAAAGTTTCGATCGAACC 59.572 37.037 29.15 22.87 33.05 3.62
582 3903 8.175716 AGGAAAATCATAAAGTTTCGATCGAAC 58.824 33.333 29.15 22.19 33.05 3.95
583 3904 8.263940 AGGAAAATCATAAAGTTTCGATCGAA 57.736 30.769 25.96 25.96 33.05 3.71
584 3905 7.011109 GGAGGAAAATCATAAAGTTTCGATCGA 59.989 37.037 15.15 15.15 33.05 3.59
585 3906 7.126398 GGAGGAAAATCATAAAGTTTCGATCG 58.874 38.462 9.36 9.36 33.05 3.69
586 3907 7.418408 GGGAGGAAAATCATAAAGTTTCGATC 58.582 38.462 0.00 0.00 33.05 3.69
587 3908 6.038271 CGGGAGGAAAATCATAAAGTTTCGAT 59.962 38.462 0.00 0.00 33.05 3.59
588 3909 5.353123 CGGGAGGAAAATCATAAAGTTTCGA 59.647 40.000 0.00 0.00 33.05 3.71
589 3910 5.123344 ACGGGAGGAAAATCATAAAGTTTCG 59.877 40.000 0.00 0.00 33.05 3.46
590 3911 6.510879 ACGGGAGGAAAATCATAAAGTTTC 57.489 37.500 0.00 0.00 0.00 2.78
591 3912 6.687604 CAACGGGAGGAAAATCATAAAGTTT 58.312 36.000 0.00 0.00 0.00 2.66
592 3913 5.336451 GCAACGGGAGGAAAATCATAAAGTT 60.336 40.000 0.00 0.00 0.00 2.66
593 3914 4.157840 GCAACGGGAGGAAAATCATAAAGT 59.842 41.667 0.00 0.00 0.00 2.66
594 3915 4.157656 TGCAACGGGAGGAAAATCATAAAG 59.842 41.667 0.00 0.00 0.00 1.85
595 3916 4.082845 TGCAACGGGAGGAAAATCATAAA 58.917 39.130 0.00 0.00 0.00 1.40
596 3917 3.691575 TGCAACGGGAGGAAAATCATAA 58.308 40.909 0.00 0.00 0.00 1.90
597 3918 3.358111 TGCAACGGGAGGAAAATCATA 57.642 42.857 0.00 0.00 0.00 2.15
598 3919 2.214376 TGCAACGGGAGGAAAATCAT 57.786 45.000 0.00 0.00 0.00 2.45
599 3920 1.988293 TTGCAACGGGAGGAAAATCA 58.012 45.000 0.00 0.00 0.00 2.57
600 3921 2.926586 GCTTTGCAACGGGAGGAAAATC 60.927 50.000 0.00 0.00 0.00 2.17
601 3922 1.000843 GCTTTGCAACGGGAGGAAAAT 59.999 47.619 0.00 0.00 0.00 1.82
602 3923 0.387565 GCTTTGCAACGGGAGGAAAA 59.612 50.000 0.00 0.00 0.00 2.29
603 3924 0.753479 TGCTTTGCAACGGGAGGAAA 60.753 50.000 0.00 0.00 34.76 3.13
604 3925 1.152860 TGCTTTGCAACGGGAGGAA 60.153 52.632 0.00 0.00 34.76 3.36
605 3926 1.896660 GTGCTTTGCAACGGGAGGA 60.897 57.895 0.00 0.00 41.47 3.71
606 3927 2.644992 GTGCTTTGCAACGGGAGG 59.355 61.111 0.00 0.00 41.47 4.30
607 3928 2.175184 CTCGTGCTTTGCAACGGGAG 62.175 60.000 2.29 0.00 41.47 4.30
608 3929 2.203084 TCGTGCTTTGCAACGGGA 60.203 55.556 8.66 0.00 41.47 5.14
609 3930 2.252260 CTCGTGCTTTGCAACGGG 59.748 61.111 8.66 1.35 41.47 5.28
610 3931 1.082756 GACTCGTGCTTTGCAACGG 60.083 57.895 8.66 1.87 41.47 4.44
611 3932 0.304705 AAGACTCGTGCTTTGCAACG 59.695 50.000 0.00 0.00 41.47 4.10
612 3933 2.475200 AAAGACTCGTGCTTTGCAAC 57.525 45.000 0.00 0.00 41.47 4.17
613 3934 3.178267 CAAAAAGACTCGTGCTTTGCAA 58.822 40.909 0.00 0.00 41.47 4.08
614 3935 2.796304 CAAAAAGACTCGTGCTTTGCA 58.204 42.857 7.37 0.00 35.86 4.08
615 3936 1.518515 GCAAAAAGACTCGTGCTTTGC 59.481 47.619 2.46 2.46 43.38 3.68
616 3937 3.070429 AGCAAAAAGACTCGTGCTTTG 57.930 42.857 7.37 0.00 44.79 2.77
617 3938 3.877508 ACTAGCAAAAAGACTCGTGCTTT 59.122 39.130 11.43 0.57 44.79 3.51
618 3939 3.467803 ACTAGCAAAAAGACTCGTGCTT 58.532 40.909 11.43 0.00 44.79 3.91
620 3941 4.985044 TTACTAGCAAAAAGACTCGTGC 57.015 40.909 0.00 0.00 37.26 5.34
621 3942 6.764877 TCTTTACTAGCAAAAAGACTCGTG 57.235 37.500 10.06 0.00 36.93 4.35
622 3943 9.485206 TTTATCTTTACTAGCAAAAAGACTCGT 57.515 29.630 14.36 5.37 42.72 4.18
623 3944 9.959775 CTTTATCTTTACTAGCAAAAAGACTCG 57.040 33.333 14.36 4.47 42.72 4.18
654 3975 9.661563 TCCTTAAACGTTTGTATCTGTATCAAT 57.338 29.630 23.46 0.00 0.00 2.57
655 3976 9.491675 TTCCTTAAACGTTTGTATCTGTATCAA 57.508 29.630 23.46 4.22 0.00 2.57
656 3977 9.491675 TTTCCTTAAACGTTTGTATCTGTATCA 57.508 29.630 23.46 0.00 0.00 2.15
657 3978 9.968743 CTTTCCTTAAACGTTTGTATCTGTATC 57.031 33.333 23.46 0.00 0.00 2.24
658 3979 9.715121 TCTTTCCTTAAACGTTTGTATCTGTAT 57.285 29.630 23.46 0.00 0.00 2.29
659 3980 9.545105 TTCTTTCCTTAAACGTTTGTATCTGTA 57.455 29.630 23.46 0.00 0.00 2.74
660 3981 8.441312 TTCTTTCCTTAAACGTTTGTATCTGT 57.559 30.769 23.46 0.00 0.00 3.41
661 3982 9.724839 TTTTCTTTCCTTAAACGTTTGTATCTG 57.275 29.630 23.46 8.24 0.00 2.90
665 3986 9.518906 GGATTTTTCTTTCCTTAAACGTTTGTA 57.481 29.630 23.46 10.25 0.00 2.41
666 3987 8.255206 AGGATTTTTCTTTCCTTAAACGTTTGT 58.745 29.630 23.46 0.05 39.36 2.83
667 3988 8.642908 AGGATTTTTCTTTCCTTAAACGTTTG 57.357 30.769 23.46 7.57 39.36 2.93
668 3989 9.961265 CTAGGATTTTTCTTTCCTTAAACGTTT 57.039 29.630 18.90 18.90 42.40 3.60
669 3990 9.346005 TCTAGGATTTTTCTTTCCTTAAACGTT 57.654 29.630 0.00 0.00 42.40 3.99
670 3991 8.913487 TCTAGGATTTTTCTTTCCTTAAACGT 57.087 30.769 0.00 0.00 42.40 3.99
671 3992 9.000486 ACTCTAGGATTTTTCTTTCCTTAAACG 58.000 33.333 0.00 0.00 42.40 3.60
673 3994 9.216117 CGACTCTAGGATTTTTCTTTCCTTAAA 57.784 33.333 0.00 0.00 42.40 1.52
674 3995 8.373220 ACGACTCTAGGATTTTTCTTTCCTTAA 58.627 33.333 0.00 0.00 42.40 1.85
675 3996 7.904205 ACGACTCTAGGATTTTTCTTTCCTTA 58.096 34.615 0.00 0.00 42.40 2.69
676 3997 6.770542 ACGACTCTAGGATTTTTCTTTCCTT 58.229 36.000 0.00 0.00 42.40 3.36
677 3998 6.361768 ACGACTCTAGGATTTTTCTTTCCT 57.638 37.500 0.00 0.00 44.55 3.36
678 3999 6.874664 AGAACGACTCTAGGATTTTTCTTTCC 59.125 38.462 0.00 0.00 30.22 3.13
679 4000 7.148557 CCAGAACGACTCTAGGATTTTTCTTTC 60.149 40.741 0.00 0.00 31.12 2.62
680 4001 6.651225 CCAGAACGACTCTAGGATTTTTCTTT 59.349 38.462 0.00 0.00 31.12 2.52
681 4002 6.014499 TCCAGAACGACTCTAGGATTTTTCTT 60.014 38.462 0.00 0.00 30.73 2.52
682 4003 5.480772 TCCAGAACGACTCTAGGATTTTTCT 59.519 40.000 0.00 0.00 30.73 2.52
683 4004 5.577554 GTCCAGAACGACTCTAGGATTTTTC 59.422 44.000 0.00 0.00 35.29 2.29
684 4005 5.480205 GTCCAGAACGACTCTAGGATTTTT 58.520 41.667 0.00 0.00 35.29 1.94
685 4006 5.074584 GTCCAGAACGACTCTAGGATTTT 57.925 43.478 0.00 0.00 35.29 1.82
686 4007 4.722361 GTCCAGAACGACTCTAGGATTT 57.278 45.455 0.00 0.00 35.29 2.17
699 4020 1.009389 CGTGAAGGCTCGTCCAGAAC 61.009 60.000 0.00 0.00 37.29 3.01
700 4021 1.176619 TCGTGAAGGCTCGTCCAGAA 61.177 55.000 0.00 0.00 37.29 3.02
701 4022 0.965866 ATCGTGAAGGCTCGTCCAGA 60.966 55.000 0.00 0.00 37.29 3.86
702 4023 0.108615 AATCGTGAAGGCTCGTCCAG 60.109 55.000 0.00 0.00 37.29 3.86
703 4024 0.320374 AAATCGTGAAGGCTCGTCCA 59.680 50.000 0.00 0.00 37.29 4.02
704 4025 1.439679 AAAATCGTGAAGGCTCGTCC 58.560 50.000 0.00 0.00 33.15 4.79
743 4064 0.757188 TCCGCAAGCCCCTTGAAAAA 60.757 50.000 9.01 0.00 43.42 1.94
744 4065 1.152652 TCCGCAAGCCCCTTGAAAA 60.153 52.632 9.01 0.00 43.42 2.29
745 4066 1.901464 GTCCGCAAGCCCCTTGAAA 60.901 57.895 9.01 0.00 43.42 2.69
746 4067 2.282180 GTCCGCAAGCCCCTTGAA 60.282 61.111 9.01 0.00 43.42 2.69
747 4068 3.551496 CTGTCCGCAAGCCCCTTGA 62.551 63.158 9.01 0.00 43.42 3.02
748 4069 3.058160 CTGTCCGCAAGCCCCTTG 61.058 66.667 0.74 0.74 43.57 3.61
749 4070 3.133365 AACTGTCCGCAAGCCCCTT 62.133 57.895 0.00 0.00 0.00 3.95
750 4071 3.570212 AACTGTCCGCAAGCCCCT 61.570 61.111 0.00 0.00 0.00 4.79
751 4072 3.365265 CAACTGTCCGCAAGCCCC 61.365 66.667 0.00 0.00 0.00 5.80
752 4073 1.244019 ATTCAACTGTCCGCAAGCCC 61.244 55.000 0.00 0.00 0.00 5.19
753 4074 0.169009 GATTCAACTGTCCGCAAGCC 59.831 55.000 0.00 0.00 0.00 4.35
754 4075 0.169009 GGATTCAACTGTCCGCAAGC 59.831 55.000 0.00 0.00 0.00 4.01
755 4076 0.804989 GGGATTCAACTGTCCGCAAG 59.195 55.000 0.00 0.00 35.28 4.01
756 4077 0.109532 TGGGATTCAACTGTCCGCAA 59.890 50.000 0.00 0.00 35.28 4.85
757 4078 0.109532 TTGGGATTCAACTGTCCGCA 59.890 50.000 0.00 0.00 35.28 5.69
758 4079 1.200020 CTTTGGGATTCAACTGTCCGC 59.800 52.381 0.00 0.00 34.67 5.54
759 4080 1.812571 CCTTTGGGATTCAACTGTCCG 59.187 52.381 0.00 0.00 34.67 4.79
760 4081 2.820197 GTCCTTTGGGATTCAACTGTCC 59.180 50.000 0.00 0.00 44.33 4.02
761 4082 2.820197 GGTCCTTTGGGATTCAACTGTC 59.180 50.000 0.00 0.00 44.33 3.51
762 4083 2.176798 TGGTCCTTTGGGATTCAACTGT 59.823 45.455 0.00 0.00 44.33 3.55
763 4084 2.875296 TGGTCCTTTGGGATTCAACTG 58.125 47.619 0.00 0.00 44.33 3.16
764 4085 3.230976 GTTGGTCCTTTGGGATTCAACT 58.769 45.455 17.91 0.00 44.88 3.16
765 4086 2.962421 TGTTGGTCCTTTGGGATTCAAC 59.038 45.455 18.14 18.14 46.40 3.18
766 4087 3.230134 CTGTTGGTCCTTTGGGATTCAA 58.770 45.455 0.00 0.00 44.33 2.69
767 4088 2.875296 CTGTTGGTCCTTTGGGATTCA 58.125 47.619 0.00 0.00 44.33 2.57
768 4089 1.546029 GCTGTTGGTCCTTTGGGATTC 59.454 52.381 0.00 0.00 44.33 2.52
769 4090 1.632589 GCTGTTGGTCCTTTGGGATT 58.367 50.000 0.00 0.00 44.33 3.01
770 4091 0.251787 GGCTGTTGGTCCTTTGGGAT 60.252 55.000 0.00 0.00 44.33 3.85
771 4092 1.152830 GGCTGTTGGTCCTTTGGGA 59.847 57.895 0.00 0.00 39.70 4.37
772 4093 0.758685 TTGGCTGTTGGTCCTTTGGG 60.759 55.000 0.00 0.00 0.00 4.12
773 4094 1.118838 TTTGGCTGTTGGTCCTTTGG 58.881 50.000 0.00 0.00 0.00 3.28
774 4095 2.102925 ACATTTGGCTGTTGGTCCTTTG 59.897 45.455 0.00 0.00 0.00 2.77
775 4096 2.365293 GACATTTGGCTGTTGGTCCTTT 59.635 45.455 0.00 0.00 0.00 3.11
776 4097 1.963515 GACATTTGGCTGTTGGTCCTT 59.036 47.619 0.00 0.00 0.00 3.36
777 4098 1.145738 AGACATTTGGCTGTTGGTCCT 59.854 47.619 0.00 0.00 27.68 3.85
860 4182 4.400961 GCCCGGCTCTGAGCAAGT 62.401 66.667 28.95 0.00 44.75 3.16
905 4227 2.600470 GGCTCGTTTTGGGCCCTT 60.600 61.111 25.70 0.00 39.96 3.95
961 4283 4.988598 CCCTGTTCGCTGCCGTGT 62.989 66.667 0.00 0.00 35.54 4.49
1181 4503 0.926293 TAATGGGAGCTGGAAAGGGG 59.074 55.000 0.00 0.00 0.00 4.79
1319 4643 1.999735 GAGACGAAATCGAATGGCACA 59.000 47.619 10.16 0.00 43.28 4.57
1344 4668 3.214328 ACAATTATCCATCCTTCACGCC 58.786 45.455 0.00 0.00 0.00 5.68
1433 4757 1.420430 AAAGTTGAGACACGGAGGGA 58.580 50.000 0.00 0.00 0.00 4.20
1434 4758 2.353803 CCTAAAGTTGAGACACGGAGGG 60.354 54.545 0.00 0.00 0.00 4.30
1435 4759 2.561419 TCCTAAAGTTGAGACACGGAGG 59.439 50.000 0.00 0.00 0.00 4.30
1436 4760 3.005472 TGTCCTAAAGTTGAGACACGGAG 59.995 47.826 0.00 0.00 34.44 4.63
1437 4761 2.960384 TGTCCTAAAGTTGAGACACGGA 59.040 45.455 0.00 0.00 34.44 4.69
1438 4762 3.380479 TGTCCTAAAGTTGAGACACGG 57.620 47.619 0.00 0.00 34.44 4.94
1439 4763 4.369182 AGTTGTCCTAAAGTTGAGACACG 58.631 43.478 3.14 0.00 38.88 4.49
1447 4771 9.676861 ACTTTGTACTAAAGTTGTCCTAAAGTT 57.323 29.630 14.04 0.00 37.18 2.66
1479 5051 6.908825 TCCCAAAATAAGTGTCTCAATTTCG 58.091 36.000 0.00 0.00 0.00 3.46
1483 5055 7.123247 CCTCAATCCCAAAATAAGTGTCTCAAT 59.877 37.037 0.00 0.00 0.00 2.57
1541 5113 2.289072 CCGCTATCCTGACCACAATAGG 60.289 54.545 0.00 0.00 0.00 2.57
1591 5166 6.516527 GCAAATCAAAACCCTGACAGATGTTA 60.517 38.462 3.32 0.00 0.00 2.41
1617 5192 1.304282 CCAGGTACATGCCAGGCTT 59.696 57.895 14.15 2.78 0.00 4.35
1724 5300 0.173481 TGTGGTAGCATGCTCGACTC 59.827 55.000 26.57 15.96 0.00 3.36
1772 5348 3.023832 CACAAAATGAGATACCCCCACC 58.976 50.000 0.00 0.00 0.00 4.61
1875 5451 4.729227 TGTGGCACATAGAACTCGAATA 57.271 40.909 17.96 0.00 44.52 1.75
1898 5474 4.836825 TCACTAGGCAGAAGATTTCTTGG 58.163 43.478 0.00 0.00 38.11 3.61
2008 5609 5.646692 TGGCTAAAATCACCTAGGCTATT 57.353 39.130 9.30 6.01 40.43 1.73
2038 5639 4.593956 AGGGACAAAGCATTCTCTTTAGG 58.406 43.478 0.00 0.00 34.76 2.69
2039 5640 7.687941 TTTAGGGACAAAGCATTCTCTTTAG 57.312 36.000 0.00 0.00 34.76 1.85
2046 5647 7.961325 TCAAATTTTTAGGGACAAAGCATTC 57.039 32.000 0.00 0.00 0.00 2.67
2081 5682 4.466827 TCAGGGGGAAGTTTCAGTTAAAC 58.533 43.478 0.00 0.00 46.61 2.01
2082 5683 4.799715 TCAGGGGGAAGTTTCAGTTAAA 57.200 40.909 0.00 0.00 0.00 1.52
2083 5684 4.799715 TTCAGGGGGAAGTTTCAGTTAA 57.200 40.909 0.00 0.00 0.00 2.01
2084 5685 5.333566 AATTCAGGGGGAAGTTTCAGTTA 57.666 39.130 0.00 0.00 39.30 2.24
2085 5686 3.903530 ATTCAGGGGGAAGTTTCAGTT 57.096 42.857 0.00 0.00 39.30 3.16
2087 5688 4.021981 GTGAAATTCAGGGGGAAGTTTCAG 60.022 45.833 0.00 0.00 43.28 3.02
2088 5689 3.895041 GTGAAATTCAGGGGGAAGTTTCA 59.105 43.478 0.00 0.00 43.28 2.69
2089 5690 3.258372 GGTGAAATTCAGGGGGAAGTTTC 59.742 47.826 0.00 0.00 43.28 2.78
2090 5691 3.239449 GGTGAAATTCAGGGGGAAGTTT 58.761 45.455 0.00 0.00 43.28 2.66
2091 5692 2.817839 CGGTGAAATTCAGGGGGAAGTT 60.818 50.000 0.00 0.00 45.67 2.66
2092 5693 1.271926 CGGTGAAATTCAGGGGGAAGT 60.272 52.381 0.00 0.00 39.30 3.01
2093 5694 1.463674 CGGTGAAATTCAGGGGGAAG 58.536 55.000 0.00 0.00 39.30 3.46
2094 5695 0.039035 CCGGTGAAATTCAGGGGGAA 59.961 55.000 0.00 0.00 40.46 3.97
2097 5698 0.328258 ACTCCGGTGAAATTCAGGGG 59.672 55.000 11.17 8.92 0.00 4.79
2098 5699 1.453155 CACTCCGGTGAAATTCAGGG 58.547 55.000 11.17 1.10 45.61 4.45
2099 5700 1.453155 CCACTCCGGTGAAATTCAGG 58.547 55.000 11.17 0.00 45.61 3.86
2100 5701 1.453155 CCCACTCCGGTGAAATTCAG 58.547 55.000 11.17 0.00 45.61 3.02
2102 5703 1.313091 GGCCCACTCCGGTGAAATTC 61.313 60.000 11.17 0.00 45.61 2.17
2104 5705 2.355115 GGCCCACTCCGGTGAAAT 59.645 61.111 11.17 0.00 45.61 2.17
2105 5706 3.961414 GGGCCCACTCCGGTGAAA 61.961 66.667 19.95 0.00 45.61 2.69
2111 5712 4.410400 GTGAAGGGGCCCACTCCG 62.410 72.222 27.72 0.00 0.00 4.63
2112 5713 4.048470 GGTGAAGGGGCCCACTCC 62.048 72.222 27.72 22.68 33.99 3.85
2117 5718 4.771745 TAGGGGGTGAAGGGGCCC 62.772 72.222 17.12 17.12 44.09 5.80
2118 5719 2.369706 ATAGGGGGTGAAGGGGCC 60.370 66.667 0.00 0.00 0.00 5.80
2119 5720 1.386057 AGATAGGGGGTGAAGGGGC 60.386 63.158 0.00 0.00 0.00 5.80
2120 5721 0.768609 GGAGATAGGGGGTGAAGGGG 60.769 65.000 0.00 0.00 0.00 4.79
2121 5722 0.768609 GGGAGATAGGGGGTGAAGGG 60.769 65.000 0.00 0.00 0.00 3.95
2122 5723 0.030092 TGGGAGATAGGGGGTGAAGG 60.030 60.000 0.00 0.00 0.00 3.46
2123 5724 1.981495 GATGGGAGATAGGGGGTGAAG 59.019 57.143 0.00 0.00 0.00 3.02
2125 5726 0.193574 GGATGGGAGATAGGGGGTGA 59.806 60.000 0.00 0.00 0.00 4.02
2127 5728 1.876003 TAGGATGGGAGATAGGGGGT 58.124 55.000 0.00 0.00 0.00 4.95
2128 5729 3.515888 ATTAGGATGGGAGATAGGGGG 57.484 52.381 0.00 0.00 0.00 5.40
2130 5731 5.787494 TGAAGAATTAGGATGGGAGATAGGG 59.213 44.000 0.00 0.00 0.00 3.53
2131 5732 6.573289 CGTGAAGAATTAGGATGGGAGATAGG 60.573 46.154 0.00 0.00 0.00 2.57
2132 5733 6.015010 ACGTGAAGAATTAGGATGGGAGATAG 60.015 42.308 0.00 0.00 0.00 2.08
2134 5735 4.656112 ACGTGAAGAATTAGGATGGGAGAT 59.344 41.667 0.00 0.00 0.00 2.75
2136 5737 4.141937 TGACGTGAAGAATTAGGATGGGAG 60.142 45.833 0.00 0.00 0.00 4.30
2137 5738 3.772572 TGACGTGAAGAATTAGGATGGGA 59.227 43.478 0.00 0.00 0.00 4.37
2138 5739 4.122776 CTGACGTGAAGAATTAGGATGGG 58.877 47.826 0.00 0.00 0.00 4.00
2139 5740 4.759782 ACTGACGTGAAGAATTAGGATGG 58.240 43.478 0.00 0.00 0.00 3.51
2140 5741 7.036220 ACTAACTGACGTGAAGAATTAGGATG 58.964 38.462 0.00 0.00 0.00 3.51
2141 5742 7.171630 ACTAACTGACGTGAAGAATTAGGAT 57.828 36.000 0.00 0.00 0.00 3.24
2142 5743 6.349944 GGACTAACTGACGTGAAGAATTAGGA 60.350 42.308 0.00 0.00 0.00 2.94
2143 5744 5.805994 GGACTAACTGACGTGAAGAATTAGG 59.194 44.000 0.00 0.00 0.00 2.69
2149 5750 2.224606 ACGGACTAACTGACGTGAAGA 58.775 47.619 0.00 0.00 38.24 2.87
2151 5752 4.566545 TTAACGGACTAACTGACGTGAA 57.433 40.909 0.00 0.00 39.76 3.18
2152 5753 4.566545 TTTAACGGACTAACTGACGTGA 57.433 40.909 0.00 0.00 39.76 4.35
2153 5754 5.060569 CAGATTTAACGGACTAACTGACGTG 59.939 44.000 0.00 0.00 39.76 4.49
2154 5755 5.159209 CAGATTTAACGGACTAACTGACGT 58.841 41.667 0.00 0.00 41.88 4.34
2155 5756 5.159209 ACAGATTTAACGGACTAACTGACG 58.841 41.667 0.00 0.00 0.00 4.35
2156 5757 8.699283 ATTACAGATTTAACGGACTAACTGAC 57.301 34.615 0.00 0.00 0.00 3.51
2157 5758 9.715121 AAATTACAGATTTAACGGACTAACTGA 57.285 29.630 0.00 0.00 0.00 3.41
2159 5760 9.498176 ACAAATTACAGATTTAACGGACTAACT 57.502 29.630 0.00 0.00 0.00 2.24
2163 5764 9.148104 GAGTACAAATTACAGATTTAACGGACT 57.852 33.333 0.00 0.00 0.00 3.85
2164 5765 8.385858 GGAGTACAAATTACAGATTTAACGGAC 58.614 37.037 0.00 0.00 0.00 4.79
2165 5766 8.095792 TGGAGTACAAATTACAGATTTAACGGA 58.904 33.333 0.00 0.00 0.00 4.69
2166 5767 8.259049 TGGAGTACAAATTACAGATTTAACGG 57.741 34.615 0.00 0.00 0.00 4.44
2175 5776 9.632807 GCTAGATCTATGGAGTACAAATTACAG 57.367 37.037 2.11 0.00 0.00 2.74
2181 5782 9.368416 AGTAATGCTAGATCTATGGAGTACAAA 57.632 33.333 21.21 0.00 0.00 2.83
2182 5783 8.941995 AGTAATGCTAGATCTATGGAGTACAA 57.058 34.615 21.21 0.22 0.00 2.41
2183 5784 8.387039 AGAGTAATGCTAGATCTATGGAGTACA 58.613 37.037 21.21 8.24 0.00 2.90
2184 5785 8.801882 AGAGTAATGCTAGATCTATGGAGTAC 57.198 38.462 16.14 16.14 0.00 2.73
2186 5787 9.815306 TTAAGAGTAATGCTAGATCTATGGAGT 57.185 33.333 2.11 1.45 0.00 3.85
2197 5798 9.906660 CCAAGTCTAGATTAAGAGTAATGCTAG 57.093 37.037 0.00 0.00 33.80 3.42
2198 5799 8.361139 GCCAAGTCTAGATTAAGAGTAATGCTA 58.639 37.037 0.00 0.00 29.69 3.49
2199 5800 7.070571 AGCCAAGTCTAGATTAAGAGTAATGCT 59.929 37.037 0.00 0.00 29.69 3.79
2200 5801 7.213678 AGCCAAGTCTAGATTAAGAGTAATGC 58.786 38.462 0.00 0.00 29.69 3.56
2201 5802 9.606631 AAAGCCAAGTCTAGATTAAGAGTAATG 57.393 33.333 0.00 0.00 29.69 1.90
2202 5803 9.606631 CAAAGCCAAGTCTAGATTAAGAGTAAT 57.393 33.333 0.00 0.00 32.36 1.89
2203 5804 8.041323 CCAAAGCCAAGTCTAGATTAAGAGTAA 58.959 37.037 0.00 0.00 0.00 2.24
2204 5805 7.556844 CCAAAGCCAAGTCTAGATTAAGAGTA 58.443 38.462 0.00 0.00 0.00 2.59
2206 5807 5.295540 GCCAAAGCCAAGTCTAGATTAAGAG 59.704 44.000 0.00 0.00 0.00 2.85
2207 5808 5.186198 GCCAAAGCCAAGTCTAGATTAAGA 58.814 41.667 0.00 0.00 0.00 2.10
2224 6362 8.699130 AGAATAAGGAAATATTTGAGGCCAAAG 58.301 33.333 5.01 0.00 44.53 2.77
2237 6375 8.598916 TGGGCGTATATTCAGAATAAGGAAATA 58.401 33.333 6.96 0.00 0.00 1.40
2246 6384 6.959639 ATTTTGTGGGCGTATATTCAGAAT 57.040 33.333 0.20 0.20 0.00 2.40
2253 6391 4.953579 AGGAACAATTTTGTGGGCGTATAT 59.046 37.500 0.00 0.00 41.31 0.86
2259 6397 1.416030 ACCAGGAACAATTTTGTGGGC 59.584 47.619 0.00 0.00 41.31 5.36
2264 6402 4.099266 TGTCCAGAACCAGGAACAATTTTG 59.901 41.667 0.00 0.00 36.80 2.44
2267 6405 3.593442 TGTCCAGAACCAGGAACAATT 57.407 42.857 0.00 0.00 36.80 2.32
2268 6406 3.424703 CATGTCCAGAACCAGGAACAAT 58.575 45.455 0.00 0.00 36.80 2.71
2286 6424 3.191371 GGTTAACTGACAGAAAGGGCATG 59.809 47.826 10.08 0.00 0.00 4.06
2305 6443 7.033791 CACTACTTATAGATCAACACACGGTT 58.966 38.462 0.00 0.00 34.47 4.44
2329 6467 6.432403 AAATAACCCCAAAAGCTTCAATCA 57.568 33.333 0.00 0.00 0.00 2.57
2373 6511 2.309162 AGAGTGGAGCTACACAGAGGTA 59.691 50.000 30.47 0.00 43.72 3.08
2377 6515 2.294449 ACAGAGTGGAGCTACACAGA 57.706 50.000 30.47 0.00 43.72 3.41
2382 6520 2.667470 TGGGATACAGAGTGGAGCTAC 58.333 52.381 0.00 0.00 39.74 3.58
2383 6521 3.619900 ATGGGATACAGAGTGGAGCTA 57.380 47.619 0.00 0.00 39.74 3.32
2385 6523 3.007398 CCTAATGGGATACAGAGTGGAGC 59.993 52.174 0.00 0.00 37.23 4.70
2386 6524 4.881019 CCTAATGGGATACAGAGTGGAG 57.119 50.000 0.00 0.00 37.23 3.86
2400 6538 3.353370 TTGTTTCCGGTACCCTAATGG 57.647 47.619 6.25 0.82 41.37 3.16
2401 6539 6.350906 TCTATTTGTTTCCGGTACCCTAATG 58.649 40.000 6.25 0.00 0.00 1.90
2402 6540 6.564557 TCTATTTGTTTCCGGTACCCTAAT 57.435 37.500 6.25 3.44 0.00 1.73
2403 6541 6.371595 TTCTATTTGTTTCCGGTACCCTAA 57.628 37.500 6.25 0.00 0.00 2.69
2404 6542 6.371595 TTTCTATTTGTTTCCGGTACCCTA 57.628 37.500 6.25 0.00 0.00 3.53
2405 6543 4.914177 TTCTATTTGTTTCCGGTACCCT 57.086 40.909 6.25 0.00 0.00 4.34
2406 6544 5.963176 TTTTCTATTTGTTTCCGGTACCC 57.037 39.130 6.25 0.00 0.00 3.69
2407 6545 7.148355 TCATTTTCTATTTGTTTCCGGTACC 57.852 36.000 0.16 0.16 0.00 3.34
2408 6546 7.094506 ACCTCATTTTCTATTTGTTTCCGGTAC 60.095 37.037 0.00 1.45 0.00 3.34
2409 6547 6.943718 ACCTCATTTTCTATTTGTTTCCGGTA 59.056 34.615 0.00 0.00 0.00 4.02
2410 6548 5.773176 ACCTCATTTTCTATTTGTTTCCGGT 59.227 36.000 0.00 0.00 0.00 5.28
2411 6549 6.267496 ACCTCATTTTCTATTTGTTTCCGG 57.733 37.500 0.00 0.00 0.00 5.14
2412 6550 9.855021 AATTACCTCATTTTCTATTTGTTTCCG 57.145 29.630 0.00 0.00 0.00 4.30
2422 6560 9.474920 CAGCAAACAAAATTACCTCATTTTCTA 57.525 29.630 0.00 0.00 34.70 2.10
2423 6561 7.442062 CCAGCAAACAAAATTACCTCATTTTCT 59.558 33.333 0.00 0.00 34.70 2.52
2424 6562 7.440856 TCCAGCAAACAAAATTACCTCATTTTC 59.559 33.333 0.00 0.00 34.70 2.29
2425 6563 7.226523 GTCCAGCAAACAAAATTACCTCATTTT 59.773 33.333 0.00 0.00 36.90 1.82
2426 6564 6.705825 GTCCAGCAAACAAAATTACCTCATTT 59.294 34.615 0.00 0.00 0.00 2.32
2434 6572 5.606348 AACCAGTCCAGCAAACAAAATTA 57.394 34.783 0.00 0.00 0.00 1.40
2464 6602 6.545298 TGGGTTTGAAAAAGAAAAATCATGGG 59.455 34.615 0.00 0.00 0.00 4.00
2466 6604 7.641760 CCTGGGTTTGAAAAAGAAAAATCATG 58.358 34.615 0.00 0.00 0.00 3.07
2467 6605 6.262944 GCCTGGGTTTGAAAAAGAAAAATCAT 59.737 34.615 0.00 0.00 0.00 2.45
2468 6606 5.588246 GCCTGGGTTTGAAAAAGAAAAATCA 59.412 36.000 0.00 0.00 0.00 2.57
2469 6607 5.822519 AGCCTGGGTTTGAAAAAGAAAAATC 59.177 36.000 0.00 0.00 0.00 2.17
2470 6608 5.754782 AGCCTGGGTTTGAAAAAGAAAAAT 58.245 33.333 0.00 0.00 0.00 1.82
2471 6609 5.172687 AGCCTGGGTTTGAAAAAGAAAAA 57.827 34.783 0.00 0.00 0.00 1.94
2476 6614 5.852827 TGAATAAGCCTGGGTTTGAAAAAG 58.147 37.500 17.25 0.00 0.00 2.27
2478 6616 7.546250 TTATGAATAAGCCTGGGTTTGAAAA 57.454 32.000 17.25 0.00 0.00 2.29
2481 6619 7.505585 CCTTATTATGAATAAGCCTGGGTTTGA 59.494 37.037 17.25 0.00 45.73 2.69
2482 6620 7.505585 TCCTTATTATGAATAAGCCTGGGTTTG 59.494 37.037 17.25 0.00 45.73 2.93
2483 6621 7.591821 TCCTTATTATGAATAAGCCTGGGTTT 58.408 34.615 17.25 0.00 45.73 3.27
2486 6624 7.234355 AGTTCCTTATTATGAATAAGCCTGGG 58.766 38.462 11.77 2.12 45.73 4.45
2684 6831 3.406764 GGAGATCCATTGGATGCTACAC 58.593 50.000 22.89 7.26 43.27 2.90
2747 6894 7.115378 GGCATCATAAGTGAAAAACAAGAACTG 59.885 37.037 0.00 0.00 38.01 3.16
2751 6898 6.265196 AGTGGCATCATAAGTGAAAAACAAGA 59.735 34.615 0.00 0.00 38.01 3.02
2796 6943 3.244561 ACTGGAAACATCAGGTTCATCGT 60.245 43.478 0.00 0.00 39.29 3.73
2797 6944 3.338249 ACTGGAAACATCAGGTTCATCG 58.662 45.455 0.00 0.00 39.29 3.84
2798 6945 5.712152 AAACTGGAAACATCAGGTTCATC 57.288 39.130 0.00 0.00 37.60 2.92
2799 6946 5.598005 TGAAAACTGGAAACATCAGGTTCAT 59.402 36.000 0.00 0.00 40.83 2.57
2800 6947 4.952957 TGAAAACTGGAAACATCAGGTTCA 59.047 37.500 0.00 0.00 40.83 3.18
2801 6948 5.163561 TGTGAAAACTGGAAACATCAGGTTC 60.164 40.000 0.00 0.00 40.83 3.62
2802 6949 4.709397 TGTGAAAACTGGAAACATCAGGTT 59.291 37.500 0.00 0.00 43.23 3.50
2822 6969 1.274447 TGCATGTCTCTGAGACCTGTG 59.726 52.381 30.51 25.67 44.44 3.66
2859 7006 5.363939 GCTTTTAGTGCATCAGAGTATCCT 58.636 41.667 0.00 0.00 33.66 3.24
2863 7010 4.082190 AGTCGCTTTTAGTGCATCAGAGTA 60.082 41.667 0.00 0.00 0.00 2.59
2910 7057 2.305009 GCTTCTAATGGGCTGAATGCT 58.695 47.619 0.00 0.00 42.39 3.79
3006 7156 4.721776 AGAGCTGGGATCATGTAAAAGGTA 59.278 41.667 0.00 0.00 0.00 3.08
3064 7214 2.419667 GTATACCGCCGCAACCATAAT 58.580 47.619 0.00 0.00 0.00 1.28
3072 7222 1.110518 TCTGATGGTATACCGCCGCA 61.111 55.000 17.13 10.69 39.43 5.69
3138 7288 3.589735 TCAAAGCCCACTTCCTGGTAATA 59.410 43.478 0.00 0.00 38.60 0.98
3243 7393 0.107703 TGCATAGCCCGTCCTTTGAG 60.108 55.000 0.00 0.00 0.00 3.02
3272 7422 2.223249 TGCTCATTATTTTTCTCGGCGC 60.223 45.455 0.00 0.00 0.00 6.53
3296 7446 3.683937 GCGCCCCAAGCATGTGTT 61.684 61.111 0.00 0.00 44.04 3.32
3297 7447 4.666253 AGCGCCCCAAGCATGTGT 62.666 61.111 2.29 0.00 44.04 3.72
3305 7455 4.966787 GAACCACCAGCGCCCCAA 62.967 66.667 2.29 0.00 0.00 4.12
3356 7507 0.969149 GCAAAGTTGGGAGGGGAAAG 59.031 55.000 0.00 0.00 0.00 2.62
3447 7598 2.996621 GTCACCCGCTCTAATATCATGC 59.003 50.000 0.00 0.00 0.00 4.06
3528 7679 2.120232 CGATTACGCTGTGCTAGGAAG 58.880 52.381 0.00 0.00 0.00 3.46
3545 7696 7.566760 TTCTTACATGGAAAATATGTGCGAT 57.433 32.000 0.00 0.00 39.03 4.58
3570 7722 9.327628 CTTCAAGAGTATGATGAGAATTCACAT 57.672 33.333 16.94 16.94 35.83 3.21
3632 7784 3.213206 TCAATCAAACACTGCTCACCT 57.787 42.857 0.00 0.00 0.00 4.00
3637 7789 1.470098 GCCGATCAATCAAACACTGCT 59.530 47.619 0.00 0.00 0.00 4.24
3726 7878 1.289160 CTGGAGGGGTGGATTTCTGA 58.711 55.000 0.00 0.00 0.00 3.27
3770 9020 4.515944 ACCAAGTACTATAGCGAGCAGTAG 59.484 45.833 0.00 1.91 0.00 2.57
3825 9075 0.888619 CTCACAGAAGCGACAGGGTA 59.111 55.000 0.00 0.00 0.00 3.69
3932 9182 1.299316 CAGCGGCCAAAACACACAG 60.299 57.895 2.24 0.00 0.00 3.66
3952 9202 4.192317 AGATCTACCGGCAATTCAAACTC 58.808 43.478 0.00 0.00 0.00 3.01
4025 9275 3.147595 CCTGGCGGTCGATCTGGA 61.148 66.667 0.00 0.00 0.00 3.86
4123 9373 2.452295 ACTGCATCTCTGTGACACTG 57.548 50.000 7.20 6.64 0.00 3.66
4137 9387 1.278985 AGCTACCATTGCTGTACTGCA 59.721 47.619 21.93 21.93 39.56 4.41
4147 9397 2.756760 ACAGCATTTCCAGCTACCATTG 59.243 45.455 0.00 0.00 41.14 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.