Multiple sequence alignment - TraesCS1B01G245300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G245300 chr1B 100.000 2459 0 0 1 2459 434430743 434428285 0.000000e+00 4542.0
1 TraesCS1B01G245300 chr1B 95.582 747 6 4 717 1462 434335136 434335856 0.000000e+00 1171.0
2 TraesCS1B01G245300 chr1B 84.181 885 83 34 777 1644 344375839 344374995 0.000000e+00 806.0
3 TraesCS1B01G245300 chr1A 87.698 1512 114 40 1 1464 401228341 401226854 0.000000e+00 1696.0
4 TraesCS1B01G245300 chr1A 90.945 1259 70 18 699 1931 400955268 400956508 0.000000e+00 1653.0
5 TraesCS1B01G245300 chr1A 91.304 506 38 6 1955 2459 400956842 400957342 0.000000e+00 686.0
6 TraesCS1B01G245300 chr1A 86.813 91 2 5 1 90 400954260 400954341 2.600000e-15 93.5
7 TraesCS1B01G245300 chr1D 88.941 1275 82 29 700 1959 321710904 321709674 0.000000e+00 1519.0
8 TraesCS1B01G245300 chr1D 87.453 797 59 12 721 1517 321322167 321322922 0.000000e+00 880.0
9 TraesCS1B01G245300 chr1D 95.229 503 23 1 1958 2459 321709648 321709146 0.000000e+00 795.0
10 TraesCS1B01G245300 chr1D 85.269 706 53 23 254 914 321324349 321325048 0.000000e+00 680.0
11 TraesCS1B01G245300 chr1D 90.514 506 34 11 1 500 321711422 321710925 0.000000e+00 656.0
12 TraesCS1B01G245300 chr1D 97.619 42 1 0 902 943 321330222 321330181 3.390000e-09 73.1
13 TraesCS1B01G245300 chr2D 87.622 719 66 17 750 1464 399347392 399348091 0.000000e+00 813.0
14 TraesCS1B01G245300 chr2B 86.926 719 71 17 750 1464 473299688 473300387 0.000000e+00 785.0
15 TraesCS1B01G245300 chr4A 95.407 479 16 2 990 1462 23614513 23614035 0.000000e+00 758.0
16 TraesCS1B01G245300 chr4A 95.041 484 17 3 990 1467 23844019 23843537 0.000000e+00 754.0
17 TraesCS1B01G245300 chr5B 79.730 222 26 8 2231 2444 72257142 72256932 2.550000e-30 143.0
18 TraesCS1B01G245300 chr5B 79.730 222 26 8 2231 2444 72822521 72822731 2.550000e-30 143.0
19 TraesCS1B01G245300 chr5B 81.609 174 23 6 2231 2396 63848882 63848710 4.270000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G245300 chr1B 434428285 434430743 2458 True 4542.000000 4542 100.000000 1 2459 1 chr1B.!!$R2 2458
1 TraesCS1B01G245300 chr1B 434335136 434335856 720 False 1171.000000 1171 95.582000 717 1462 1 chr1B.!!$F1 745
2 TraesCS1B01G245300 chr1B 344374995 344375839 844 True 806.000000 806 84.181000 777 1644 1 chr1B.!!$R1 867
3 TraesCS1B01G245300 chr1A 401226854 401228341 1487 True 1696.000000 1696 87.698000 1 1464 1 chr1A.!!$R1 1463
4 TraesCS1B01G245300 chr1A 400954260 400957342 3082 False 810.833333 1653 89.687333 1 2459 3 chr1A.!!$F1 2458
5 TraesCS1B01G245300 chr1D 321709146 321711422 2276 True 990.000000 1519 91.561333 1 2459 3 chr1D.!!$R2 2458
6 TraesCS1B01G245300 chr1D 321322167 321325048 2881 False 780.000000 880 86.361000 254 1517 2 chr1D.!!$F1 1263
7 TraesCS1B01G245300 chr2D 399347392 399348091 699 False 813.000000 813 87.622000 750 1464 1 chr2D.!!$F1 714
8 TraesCS1B01G245300 chr2B 473299688 473300387 699 False 785.000000 785 86.926000 750 1464 1 chr2B.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 731 0.666274 CGTGGCTTCAGCGTGAGTAA 60.666 55.0 0.0 0.0 43.26 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 3135 0.381801 CTGCAAAAGAAGCGTGTGGT 59.618 50.0 0.0 0.0 33.85 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 199 6.988329 ACACGAACATTTTCAAATTCACAAC 58.012 32.000 0.00 0.00 0.00 3.32
126 200 6.587990 ACACGAACATTTTCAAATTCACAACA 59.412 30.769 0.00 0.00 0.00 3.33
127 202 7.112397 CACGAACATTTTCAAATTCACAACAG 58.888 34.615 0.00 0.00 0.00 3.16
129 204 7.971168 ACGAACATTTTCAAATTCACAACAGTA 59.029 29.630 0.00 0.00 0.00 2.74
306 385 9.264719 AGAATTTGTGAACATTTTTCAATCCTC 57.735 29.630 0.00 0.00 0.00 3.71
307 386 7.642071 ATTTGTGAACATTTTTCAATCCTCG 57.358 32.000 0.00 0.00 0.00 4.63
310 389 6.205784 TGTGAACATTTTTCAATCCTCGAAC 58.794 36.000 0.00 0.00 0.00 3.95
315 394 7.921786 ACATTTTTCAATCCTCGAACATCTA 57.078 32.000 0.00 0.00 0.00 1.98
332 411 7.370836 CGAACATCTATTCTATTTTGCGTGAAC 59.629 37.037 0.00 0.00 0.00 3.18
333 412 7.609760 ACATCTATTCTATTTTGCGTGAACA 57.390 32.000 0.00 0.00 0.00 3.18
338 417 9.554724 TCTATTCTATTTTGCGTGAACATTTTC 57.445 29.630 0.00 0.00 0.00 2.29
398 489 4.505313 AGTTTGCCTTTTTCTCGAATCC 57.495 40.909 0.00 0.00 0.00 3.01
407 498 6.650372 CCTTTTTCTCGAATCCACGAATATC 58.350 40.000 0.00 0.00 41.67 1.63
423 515 4.898488 CGAATATCTTTGAATTCGCGAACC 59.102 41.667 26.00 18.95 45.33 3.62
424 516 2.806288 ATCTTTGAATTCGCGAACCG 57.194 45.000 26.00 8.91 38.61 4.44
437 537 5.319232 TCGCGAACCGTTTTATGATATTC 57.681 39.130 6.20 0.00 38.35 1.75
460 560 4.817318 ATAAAACCGGCAAAACCATGAT 57.183 36.364 0.00 0.00 39.03 2.45
560 660 5.202640 CGAAAAGAGTAAAAACCGAAGTGG 58.797 41.667 0.00 0.00 46.41 4.00
628 728 3.114616 CCGTGGCTTCAGCGTGAG 61.115 66.667 0.00 0.00 43.26 3.51
631 731 0.666274 CGTGGCTTCAGCGTGAGTAA 60.666 55.000 0.00 0.00 43.26 2.24
633 733 0.679505 TGGCTTCAGCGTGAGTAACT 59.320 50.000 0.00 0.00 43.26 2.24
794 1158 0.878523 CCGTCCACAGAAAACAGCGA 60.879 55.000 0.00 0.00 0.00 4.93
903 1269 3.827898 CACCGCTCCTCGTCTCCC 61.828 72.222 0.00 0.00 36.19 4.30
1470 1869 3.126831 CTCCTCGTAGATTGCCATGTTC 58.873 50.000 0.00 0.00 33.89 3.18
1491 1890 8.432006 ATGTTCGCATCTCAGAAACTGTAGTTT 61.432 37.037 9.59 9.59 41.28 2.66
1536 1935 9.294030 CTAGTGTTTATTGCTGAATGGAAATTC 57.706 33.333 0.00 0.00 0.00 2.17
1570 2138 3.369546 AGTTTTTGGTTCGATTGCTGG 57.630 42.857 0.00 0.00 0.00 4.85
1600 2176 5.006068 CCGTGTCATGTACTGATCTGAAATG 59.994 44.000 6.60 7.00 35.97 2.32
1653 2471 5.001874 ACCTTCGGTTCTGATTTCTTAACC 58.998 41.667 0.00 0.00 38.40 2.85
1654 2472 5.001232 CCTTCGGTTCTGATTTCTTAACCA 58.999 41.667 0.00 0.00 41.20 3.67
1656 2474 5.223449 TCGGTTCTGATTTCTTAACCAGT 57.777 39.130 0.00 0.00 41.20 4.00
1657 2475 5.617252 TCGGTTCTGATTTCTTAACCAGTT 58.383 37.500 0.00 0.00 41.20 3.16
1658 2476 6.761312 TCGGTTCTGATTTCTTAACCAGTTA 58.239 36.000 0.00 0.00 41.20 2.24
1659 2477 6.647895 TCGGTTCTGATTTCTTAACCAGTTAC 59.352 38.462 0.00 0.00 41.20 2.50
1697 2516 1.066858 TGGCTTAGCTTTCTGACCGAG 60.067 52.381 3.59 0.00 0.00 4.63
1698 2517 1.066787 GGCTTAGCTTTCTGACCGAGT 60.067 52.381 3.59 0.00 0.00 4.18
1707 2526 4.927425 GCTTTCTGACCGAGTTGTGTTATA 59.073 41.667 0.00 0.00 0.00 0.98
1794 3060 1.903877 AACCAGATCGGCTGTCCCAG 61.904 60.000 3.85 0.00 43.33 4.45
1804 3070 0.249911 GCTGTCCCAGTTGTTCGACT 60.250 55.000 0.00 0.00 33.43 4.18
1811 3077 3.875134 TCCCAGTTGTTCGACTTTTCTTC 59.125 43.478 0.00 0.00 0.00 2.87
1815 3081 6.037830 CCCAGTTGTTCGACTTTTCTTCTTAA 59.962 38.462 0.00 0.00 0.00 1.85
1817 3083 7.428472 CCAGTTGTTCGACTTTTCTTCTTAAAC 59.572 37.037 0.00 0.00 0.00 2.01
1818 3084 8.175716 CAGTTGTTCGACTTTTCTTCTTAAACT 58.824 33.333 0.00 0.00 0.00 2.66
1819 3085 8.175716 AGTTGTTCGACTTTTCTTCTTAAACTG 58.824 33.333 0.00 0.00 0.00 3.16
1820 3086 7.011828 TGTTCGACTTTTCTTCTTAAACTGG 57.988 36.000 0.00 0.00 0.00 4.00
1822 3088 5.365619 TCGACTTTTCTTCTTAAACTGGCT 58.634 37.500 0.00 0.00 0.00 4.75
1823 3089 5.465724 TCGACTTTTCTTCTTAAACTGGCTC 59.534 40.000 0.00 0.00 0.00 4.70
1824 3090 5.236478 CGACTTTTCTTCTTAAACTGGCTCA 59.764 40.000 0.00 0.00 0.00 4.26
1825 3091 6.238374 CGACTTTTCTTCTTAAACTGGCTCAA 60.238 38.462 0.00 0.00 0.00 3.02
1826 3092 7.520614 CGACTTTTCTTCTTAAACTGGCTCAAT 60.521 37.037 0.00 0.00 0.00 2.57
1831 3097 4.380843 TCTTAAACTGGCTCAATTGGGA 57.619 40.909 10.25 0.00 0.00 4.37
1832 3098 4.079253 TCTTAAACTGGCTCAATTGGGAC 58.921 43.478 10.25 6.94 0.00 4.46
1833 3099 2.380064 AAACTGGCTCAATTGGGACA 57.620 45.000 14.65 14.65 0.00 4.02
1834 3100 1.915141 AACTGGCTCAATTGGGACAG 58.085 50.000 35.14 35.14 42.39 3.51
1835 3101 0.610232 ACTGGCTCAATTGGGACAGC 60.610 55.000 36.38 22.08 42.39 4.40
1836 3102 3.608432 GGCTCAATTGGGACAGCC 58.392 61.111 17.32 17.32 44.63 4.85
1837 3103 2.409870 GGCTCAATTGGGACAGCCG 61.410 63.158 17.32 0.00 42.10 5.52
1838 3104 1.377202 GCTCAATTGGGACAGCCGA 60.377 57.895 10.25 0.00 42.39 5.54
1839 3105 0.749454 GCTCAATTGGGACAGCCGAT 60.749 55.000 10.25 0.00 42.39 4.18
1840 3106 1.755179 CTCAATTGGGACAGCCGATT 58.245 50.000 0.00 0.00 42.39 3.34
1841 3107 1.402968 CTCAATTGGGACAGCCGATTG 59.597 52.381 0.00 0.00 42.39 2.67
1842 3108 1.176527 CAATTGGGACAGCCGATTGT 58.823 50.000 0.00 0.00 42.39 2.71
1843 3109 1.545582 CAATTGGGACAGCCGATTGTT 59.454 47.619 0.00 0.00 42.39 2.83
1844 3110 1.923356 ATTGGGACAGCCGATTGTTT 58.077 45.000 0.00 0.00 42.39 2.83
1845 3111 1.243902 TTGGGACAGCCGATTGTTTC 58.756 50.000 0.00 0.00 42.39 2.78
1860 3126 4.320608 TTGTTTCCAATTGAGGTTCTGC 57.679 40.909 7.12 0.00 0.00 4.26
1867 3133 2.880268 CAATTGAGGTTCTGCACACTGA 59.120 45.455 0.00 0.00 0.00 3.41
1869 3135 2.708216 TGAGGTTCTGCACACTGAAA 57.292 45.000 0.00 0.00 35.76 2.69
1882 3161 1.670811 CACTGAAACCACACGCTTCTT 59.329 47.619 0.00 0.00 0.00 2.52
1926 3206 6.430000 ACAAGTACCTGATGAATTTGTACCAC 59.570 38.462 0.00 0.00 33.87 4.16
1956 3516 3.126831 GAGATAAACCAGCGACCAGATG 58.873 50.000 0.00 0.00 35.69 2.90
1975 3565 7.697691 CCAGATGTTGGTAATCTTTATGACAC 58.302 38.462 0.00 0.00 42.41 3.67
1978 3568 7.554118 AGATGTTGGTAATCTTTATGACACCAG 59.446 37.037 0.00 0.00 41.38 4.00
1983 3573 6.069673 TGGTAATCTTTATGACACCAGGATGT 60.070 38.462 0.00 0.00 37.87 3.06
1994 3584 4.330250 ACACCAGGATGTCAAATCTCTTG 58.670 43.478 0.00 0.00 0.00 3.02
2091 3682 6.872628 TTTATCATCCTGCTCTGCAAATAG 57.127 37.500 0.00 0.00 38.41 1.73
2133 3724 0.946221 GACTTCACGACTGGCTGGTG 60.946 60.000 0.00 0.00 0.00 4.17
2147 3738 3.513515 TGGCTGGTGAGTTCTTTGTTTTT 59.486 39.130 0.00 0.00 0.00 1.94
2162 3753 6.666113 TCTTTGTTTTTCCCTTTCAGGTTACT 59.334 34.615 0.00 0.00 31.93 2.24
2223 3892 2.333688 GGAGGCTATCCTGAAACCAC 57.666 55.000 0.00 0.00 44.46 4.16
2334 4003 5.430886 ACTGCTACATATTTCTGTGCATCA 58.569 37.500 0.00 0.00 34.78 3.07
2349 4018 5.005740 TGTGCATCAAAGATATATGGAGGC 58.994 41.667 0.00 2.95 35.99 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 9.790389 TGTTCGTGTATTTTAAAACAGTTCATT 57.210 25.926 1.97 0.00 0.00 2.57
103 177 6.811170 ACTGTTGTGAATTTGAAAATGTTCGT 59.189 30.769 0.00 0.00 36.46 3.85
114 188 8.011106 GCCAATTCAAATACTGTTGTGAATTTG 58.989 33.333 16.69 15.23 44.36 2.32
125 199 5.639757 TGATGTTCGCCAATTCAAATACTG 58.360 37.500 0.00 0.00 0.00 2.74
126 200 5.647658 TCTGATGTTCGCCAATTCAAATACT 59.352 36.000 0.00 0.00 0.00 2.12
127 202 5.879237 TCTGATGTTCGCCAATTCAAATAC 58.121 37.500 0.00 0.00 0.00 1.89
129 204 5.587388 ATCTGATGTTCGCCAATTCAAAT 57.413 34.783 0.00 0.00 0.00 2.32
231 310 7.505646 TGTTGACAAATTTGAACAAAAGTTCG 58.494 30.769 24.64 0.00 33.96 3.95
300 379 8.778358 GCAAAATAGAATAGATGTTCGAGGATT 58.222 33.333 0.00 0.00 33.36 3.01
302 381 6.420903 CGCAAAATAGAATAGATGTTCGAGGA 59.579 38.462 0.00 0.00 33.36 3.71
303 382 6.201044 ACGCAAAATAGAATAGATGTTCGAGG 59.799 38.462 0.00 0.00 33.36 4.63
306 385 6.933130 TCACGCAAAATAGAATAGATGTTCG 58.067 36.000 0.00 0.00 33.36 3.95
307 386 8.175069 TGTTCACGCAAAATAGAATAGATGTTC 58.825 33.333 0.00 0.00 0.00 3.18
310 389 9.507280 AAATGTTCACGCAAAATAGAATAGATG 57.493 29.630 0.00 0.00 0.00 2.90
315 394 8.586570 TTGAAAATGTTCACGCAAAATAGAAT 57.413 26.923 0.00 0.00 43.52 2.40
389 480 6.144078 TCAAAGATATTCGTGGATTCGAGA 57.856 37.500 0.00 0.00 40.86 4.04
391 482 7.306574 CGAATTCAAAGATATTCGTGGATTCGA 60.307 37.037 17.51 0.00 46.25 3.71
407 498 2.309898 AACGGTTCGCGAATTCAAAG 57.690 45.000 26.23 14.33 0.00 2.77
423 515 8.687301 GCCGGTTTTATTGAATATCATAAAACG 58.313 33.333 19.45 9.39 44.22 3.60
424 516 9.522804 TGCCGGTTTTATTGAATATCATAAAAC 57.477 29.630 18.74 18.74 43.35 2.43
437 537 4.310769 TCATGGTTTTGCCGGTTTTATTG 58.689 39.130 1.90 0.00 41.21 1.90
522 622 6.873997 ACTCTTTTCGTCCTTTCCAATTTTT 58.126 32.000 0.00 0.00 0.00 1.94
538 638 6.367686 TCCACTTCGGTTTTTACTCTTTTC 57.632 37.500 0.00 0.00 35.57 2.29
560 660 8.055986 CGCTAAAACAAAATTCTCTGGTTTTTC 58.944 33.333 0.00 0.00 40.77 2.29
626 726 2.558849 GCTACGTATCGCGAGTTACTC 58.441 52.381 16.66 1.64 44.77 2.59
627 727 2.659731 GCTACGTATCGCGAGTTACT 57.340 50.000 16.66 0.00 44.77 2.24
642 826 3.642778 TTCTGACGGGCAGCGCTAC 62.643 63.158 10.99 3.45 44.52 3.58
899 1265 1.289160 TGGAAGGAGATGTTGGGGAG 58.711 55.000 0.00 0.00 0.00 4.30
903 1269 4.935352 TTTGTTTGGAAGGAGATGTTGG 57.065 40.909 0.00 0.00 0.00 3.77
1470 1869 4.667668 GCAAACTACAGTTTCTGAGATGCG 60.668 45.833 4.38 0.00 45.54 4.73
1491 1890 3.328382 AGTTTTAGATACACGGCAGCA 57.672 42.857 0.00 0.00 0.00 4.41
1525 1924 4.107622 CAGCATTCCACGAATTTCCATTC 58.892 43.478 0.00 0.00 36.20 2.67
1536 1935 3.980775 CCAAAAACTAACAGCATTCCACG 59.019 43.478 0.00 0.00 0.00 4.94
1570 2138 1.194547 CAGTACATGACACGGCAACAC 59.805 52.381 0.00 0.00 0.00 3.32
1600 2176 1.133869 GCGCACCACATCGTTTACC 59.866 57.895 0.30 0.00 0.00 2.85
1633 2451 5.617252 ACTGGTTAAGAAATCAGAACCGAA 58.383 37.500 5.44 0.00 45.24 4.30
1653 2471 4.684242 TGCATCAAACGAGTACTGTAACTG 59.316 41.667 0.00 0.00 0.00 3.16
1654 2472 4.878439 TGCATCAAACGAGTACTGTAACT 58.122 39.130 0.00 0.00 0.00 2.24
1656 2474 4.629634 CCATGCATCAAACGAGTACTGTAA 59.370 41.667 0.00 0.00 0.00 2.41
1657 2475 4.180817 CCATGCATCAAACGAGTACTGTA 58.819 43.478 0.00 0.00 0.00 2.74
1658 2476 3.002791 CCATGCATCAAACGAGTACTGT 58.997 45.455 0.00 0.00 0.00 3.55
1659 2477 2.223112 GCCATGCATCAAACGAGTACTG 60.223 50.000 0.00 0.00 0.00 2.74
1697 2516 4.229096 TCACTTCCGTCGTATAACACAAC 58.771 43.478 0.00 0.00 0.00 3.32
1698 2517 4.502171 TCACTTCCGTCGTATAACACAA 57.498 40.909 0.00 0.00 0.00 3.33
1707 2526 3.587797 AACATACATCACTTCCGTCGT 57.412 42.857 0.00 0.00 0.00 4.34
1794 3060 7.428472 CCAGTTTAAGAAGAAAAGTCGAACAAC 59.572 37.037 0.00 0.00 0.00 3.32
1804 3070 7.209475 CCAATTGAGCCAGTTTAAGAAGAAAA 58.791 34.615 7.12 0.00 0.00 2.29
1811 3077 3.826157 TGTCCCAATTGAGCCAGTTTAAG 59.174 43.478 7.12 0.00 0.00 1.85
1815 3081 1.915141 CTGTCCCAATTGAGCCAGTT 58.085 50.000 7.12 0.00 0.00 3.16
1817 3083 2.187073 GCTGTCCCAATTGAGCCAG 58.813 57.895 7.12 9.98 0.00 4.85
1818 3084 4.421365 GCTGTCCCAATTGAGCCA 57.579 55.556 7.12 0.00 0.00 4.75
1819 3085 2.409870 CGGCTGTCCCAATTGAGCC 61.410 63.158 20.70 20.70 46.44 4.70
1820 3086 0.749454 ATCGGCTGTCCCAATTGAGC 60.749 55.000 7.12 7.68 0.00 4.26
1822 3088 1.271871 ACAATCGGCTGTCCCAATTGA 60.272 47.619 7.12 0.00 36.37 2.57
1823 3089 1.176527 ACAATCGGCTGTCCCAATTG 58.823 50.000 0.00 0.00 37.72 2.32
1824 3090 1.923356 AACAATCGGCTGTCCCAATT 58.077 45.000 0.00 0.00 0.00 2.32
1825 3091 1.818674 GAAACAATCGGCTGTCCCAAT 59.181 47.619 0.00 0.00 0.00 3.16
1826 3092 1.243902 GAAACAATCGGCTGTCCCAA 58.756 50.000 0.00 0.00 0.00 4.12
1840 3106 3.068024 GTGCAGAACCTCAATTGGAAACA 59.932 43.478 5.42 0.00 39.83 2.83
1841 3107 3.068024 TGTGCAGAACCTCAATTGGAAAC 59.932 43.478 5.42 0.00 0.00 2.78
1842 3108 3.068024 GTGTGCAGAACCTCAATTGGAAA 59.932 43.478 5.42 0.00 0.00 3.13
1843 3109 2.622942 GTGTGCAGAACCTCAATTGGAA 59.377 45.455 5.42 0.00 0.00 3.53
1844 3110 2.158623 AGTGTGCAGAACCTCAATTGGA 60.159 45.455 5.42 0.00 0.00 3.53
1845 3111 2.030540 CAGTGTGCAGAACCTCAATTGG 60.031 50.000 5.42 0.00 0.00 3.16
1860 3126 0.732571 AAGCGTGTGGTTTCAGTGTG 59.267 50.000 0.00 0.00 29.87 3.82
1867 3133 1.203523 TGCAAAAGAAGCGTGTGGTTT 59.796 42.857 0.00 0.00 35.57 3.27
1869 3135 0.381801 CTGCAAAAGAAGCGTGTGGT 59.618 50.000 0.00 0.00 33.85 4.16
1926 3206 3.246226 CGCTGGTTTATCTCCAAAGATCG 59.754 47.826 0.00 0.00 41.46 3.69
1956 3516 6.177610 TCCTGGTGTCATAAAGATTACCAAC 58.822 40.000 0.00 0.00 42.24 3.77
1975 3565 5.095145 TCTCAAGAGATTTGACATCCTGG 57.905 43.478 0.00 0.00 31.41 4.45
1978 3568 9.171877 AGTATTTTCTCAAGAGATTTGACATCC 57.828 33.333 0.00 0.00 37.29 3.51
1983 3573 9.730705 ATGACAGTATTTTCTCAAGAGATTTGA 57.269 29.630 0.00 0.00 37.29 2.69
1994 3584 5.947443 AGCTTGCAATGACAGTATTTTCTC 58.053 37.500 0.00 0.00 0.00 2.87
2039 3630 6.998074 TGGTTCAAGAAGTTGTAGATGTTCAT 59.002 34.615 0.00 0.00 34.98 2.57
2091 3682 2.005451 ACGATCTCTGAATTGCTGCAC 58.995 47.619 0.00 0.00 0.00 4.57
2162 3753 8.421249 AATATCAGACCACCAAAATCAAGAAA 57.579 30.769 0.00 0.00 0.00 2.52
2223 3892 1.303643 AGCCGGGCTTTCTTCTTGG 60.304 57.895 17.69 0.00 33.89 3.61
2334 4003 5.767168 GCTTGTTCAGCCTCCATATATCTTT 59.233 40.000 0.00 0.00 43.65 2.52
2349 4018 4.935702 TCTTGAAAACCATGCTTGTTCAG 58.064 39.130 0.00 0.00 30.43 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.