Multiple sequence alignment - TraesCS1B01G245200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G245200 chr1B 100.000 2411 0 0 1 2411 434424193 434421783 0.000000e+00 4453
1 TraesCS1B01G245200 chr1B 88.638 1725 112 40 702 2402 434408793 434410457 0.000000e+00 2023
2 TraesCS1B01G245200 chr1B 94.538 476 15 6 937 1411 492369101 492368636 0.000000e+00 725
3 TraesCS1B01G245200 chr1D 93.137 1020 30 17 710 1719 321640375 321641364 0.000000e+00 1459
4 TraesCS1B01G245200 chr1D 91.525 1062 60 16 573 1620 321705383 321704338 0.000000e+00 1435
5 TraesCS1B01G245200 chr1D 97.647 425 8 2 996 1419 369925931 369925508 0.000000e+00 728
6 TraesCS1B01G245200 chr1D 88.319 565 29 10 1829 2390 321704280 321703750 0.000000e+00 643
7 TraesCS1B01G245200 chr1D 88.210 458 38 9 1852 2297 321641465 321641918 1.270000e-147 532
8 TraesCS1B01G245200 chr1D 94.798 173 8 1 135 306 84712057 84712229 3.950000e-68 268
9 TraesCS1B01G245200 chr1D 94.253 174 8 2 135 308 362598056 362597885 5.110000e-67 265
10 TraesCS1B01G245200 chr1D 91.339 127 10 1 11 136 321332544 321332670 3.190000e-39 172
11 TraesCS1B01G245200 chr1A 87.469 1197 97 32 698 1887 400975650 400974500 0.000000e+00 1330
12 TraesCS1B01G245200 chr1A 94.434 557 29 2 716 1271 400960540 400961095 0.000000e+00 856
13 TraesCS1B01G245200 chr1A 95.789 475 15 5 938 1411 468599255 468598785 0.000000e+00 761
14 TraesCS1B01G245200 chr1A 86.458 480 45 12 1938 2411 400962843 400963308 2.140000e-140 508
15 TraesCS1B01G245200 chr1A 93.458 321 13 3 1266 1585 400962216 400962529 1.010000e-128 470
16 TraesCS1B01G245200 chr1A 88.918 379 29 8 2017 2391 400974408 400974039 2.830000e-124 455
17 TraesCS1B01G245200 chr1A 91.509 106 7 2 11 115 400976132 400976028 6.950000e-31 145
18 TraesCS1B01G245200 chr4A 86.382 727 64 20 718 1419 23611515 23610799 0.000000e+00 761
19 TraesCS1B01G245200 chr3A 85.143 350 31 7 2015 2347 27167835 27168180 2.970000e-89 339
20 TraesCS1B01G245200 chr3A 84.571 350 32 8 2015 2347 27069689 27070033 6.430000e-86 327
21 TraesCS1B01G245200 chr3A 84.571 350 33 7 2015 2347 27128276 27128621 6.430000e-86 327
22 TraesCS1B01G245200 chr3A 84.286 350 34 9 2015 2347 27213449 27213794 2.990000e-84 322
23 TraesCS1B01G245200 chr5B 96.364 165 6 0 135 299 307879665 307879829 3.050000e-69 272
24 TraesCS1B01G245200 chr2D 93.923 181 9 2 135 313 616968920 616968740 3.050000e-69 272
25 TraesCS1B01G245200 chr7A 94.828 174 7 2 128 300 156116010 156115838 1.100000e-68 270
26 TraesCS1B01G245200 chr6D 95.808 167 7 0 133 299 458986331 458986165 1.100000e-68 270
27 TraesCS1B01G245200 chr5D 95.294 170 7 1 135 304 559625769 559625937 3.950000e-68 268
28 TraesCS1B01G245200 chr7D 93.820 178 10 1 134 311 363148832 363149008 1.420000e-67 267
29 TraesCS1B01G245200 chr5A 93.333 180 11 1 124 303 526657780 526657958 5.110000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G245200 chr1B 434421783 434424193 2410 True 4453.000000 4453 100.000000 1 2411 1 chr1B.!!$R1 2410
1 TraesCS1B01G245200 chr1B 434408793 434410457 1664 False 2023.000000 2023 88.638000 702 2402 1 chr1B.!!$F1 1700
2 TraesCS1B01G245200 chr1D 321703750 321705383 1633 True 1039.000000 1435 89.922000 573 2390 2 chr1D.!!$R3 1817
3 TraesCS1B01G245200 chr1D 321640375 321641918 1543 False 995.500000 1459 90.673500 710 2297 2 chr1D.!!$F3 1587
4 TraesCS1B01G245200 chr1A 400974039 400976132 2093 True 643.333333 1330 89.298667 11 2391 3 chr1A.!!$R2 2380
5 TraesCS1B01G245200 chr1A 400960540 400963308 2768 False 611.333333 856 91.450000 716 2411 3 chr1A.!!$F1 1695
6 TraesCS1B01G245200 chr4A 23610799 23611515 716 True 761.000000 761 86.382000 718 1419 1 chr4A.!!$R1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.03254 CTTTTGGGACTTGCCACTGC 59.967 55.0 0.0 0.0 38.95 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 2984 0.036388 GGGCAGGTCGAACTGAATGA 60.036 55.0 34.09 0.0 40.97 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.486310 GTGCCAGTATCATGGACCAGA 59.514 52.381 0.00 0.00 43.57 3.86
37 38 2.779430 TGCCAGTATCATGGACCAGAAT 59.221 45.455 0.00 0.00 43.57 2.40
38 39 3.973305 TGCCAGTATCATGGACCAGAATA 59.027 43.478 0.00 0.00 43.57 1.75
39 40 4.598807 TGCCAGTATCATGGACCAGAATAT 59.401 41.667 0.00 0.00 43.57 1.28
78 79 9.527157 TGTAGAGTTTGGATTTCAAATGGAATA 57.473 29.630 0.00 0.00 45.79 1.75
106 107 8.779354 AAATGTCTGTACTTAGATGAAGGAAC 57.221 34.615 0.00 0.00 39.74 3.62
107 108 6.282199 TGTCTGTACTTAGATGAAGGAACC 57.718 41.667 0.00 0.00 39.74 3.62
115 116 6.296803 ACTTAGATGAAGGAACCGAAACTTT 58.703 36.000 0.00 0.00 39.74 2.66
117 118 5.438761 AGATGAAGGAACCGAAACTTTTG 57.561 39.130 0.00 0.00 0.00 2.44
119 120 2.691011 TGAAGGAACCGAAACTTTTGGG 59.309 45.455 11.86 5.61 41.25 4.12
121 122 2.304092 AGGAACCGAAACTTTTGGGAC 58.696 47.619 11.86 5.62 38.18 4.46
122 123 2.092049 AGGAACCGAAACTTTTGGGACT 60.092 45.455 11.86 4.58 38.18 3.85
123 124 2.691526 GGAACCGAAACTTTTGGGACTT 59.308 45.455 11.86 0.00 38.18 3.01
125 126 1.407618 ACCGAAACTTTTGGGACTTGC 59.592 47.619 11.86 0.00 38.18 4.01
126 127 1.269569 CCGAAACTTTTGGGACTTGCC 60.270 52.381 0.05 0.00 38.18 4.52
127 128 1.407258 CGAAACTTTTGGGACTTGCCA 59.593 47.619 0.00 0.00 38.95 4.92
128 129 2.798145 CGAAACTTTTGGGACTTGCCAC 60.798 50.000 0.00 0.00 38.95 5.01
131 132 0.032540 CTTTTGGGACTTGCCACTGC 59.967 55.000 0.00 0.00 38.95 4.40
140 141 3.068881 TGCCACTGCAGTACTCCC 58.931 61.111 21.20 6.73 44.23 4.30
141 142 1.536418 TGCCACTGCAGTACTCCCT 60.536 57.895 21.20 0.00 44.23 4.20
142 143 1.219393 GCCACTGCAGTACTCCCTC 59.781 63.158 21.20 0.00 37.47 4.30
143 144 1.901085 CCACTGCAGTACTCCCTCC 59.099 63.158 21.20 0.00 0.00 4.30
145 146 1.076906 ACTGCAGTACTCCCTCCGT 59.923 57.895 20.16 0.00 0.00 4.69
146 147 0.542232 ACTGCAGTACTCCCTCCGTT 60.542 55.000 20.16 0.00 0.00 4.44
147 148 0.173708 CTGCAGTACTCCCTCCGTTC 59.826 60.000 5.25 0.00 0.00 3.95
148 149 1.255667 TGCAGTACTCCCTCCGTTCC 61.256 60.000 0.00 0.00 0.00 3.62
149 150 0.971447 GCAGTACTCCCTCCGTTCCT 60.971 60.000 0.00 0.00 0.00 3.36
150 151 1.684248 GCAGTACTCCCTCCGTTCCTA 60.684 57.143 0.00 0.00 0.00 2.94
151 152 2.731572 CAGTACTCCCTCCGTTCCTAA 58.268 52.381 0.00 0.00 0.00 2.69
152 153 3.094572 CAGTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
153 154 3.705072 CAGTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
157 158 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
158 159 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
160 161 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
162 163 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
167 168 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
168 169 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
195 196 8.795842 ATTTTAAATGGACTACAACATACGGA 57.204 30.769 0.00 0.00 0.00 4.69
196 197 8.795842 TTTTAAATGGACTACAACATACGGAT 57.204 30.769 0.00 0.00 0.00 4.18
197 198 7.780008 TTAAATGGACTACAACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
199 200 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
238 239 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
239 240 8.485976 AGAGTGTAGATTCACTTATTTTGCTC 57.514 34.615 0.98 0.00 46.81 4.26
240 241 7.550906 AGAGTGTAGATTCACTTATTTTGCTCC 59.449 37.037 0.98 0.00 46.81 4.70
241 242 6.313905 AGTGTAGATTCACTTATTTTGCTCCG 59.686 38.462 0.00 0.00 44.92 4.63
242 243 6.092259 GTGTAGATTCACTTATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
243 244 7.277098 GTGTAGATTCACTTATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
244 245 7.985184 TGTAGATTCACTTATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
245 246 9.472361 GTAGATTCACTTATTTTGCTCCGTATA 57.528 33.333 0.00 0.00 0.00 1.47
249 250 9.998106 ATTCACTTATTTTGCTCCGTATATAGT 57.002 29.630 0.00 0.00 0.00 2.12
250 251 9.472361 TTCACTTATTTTGCTCCGTATATAGTC 57.528 33.333 0.00 0.00 0.00 2.59
251 252 8.635328 TCACTTATTTTGCTCCGTATATAGTCA 58.365 33.333 0.00 0.00 0.00 3.41
252 253 8.700644 CACTTATTTTGCTCCGTATATAGTCAC 58.299 37.037 0.00 0.00 0.00 3.67
253 254 8.639761 ACTTATTTTGCTCCGTATATAGTCACT 58.360 33.333 0.00 0.00 0.00 3.41
254 255 9.477484 CTTATTTTGCTCCGTATATAGTCACTT 57.523 33.333 0.00 0.00 0.00 3.16
255 256 7.715265 ATTTTGCTCCGTATATAGTCACTTG 57.285 36.000 0.00 0.00 0.00 3.16
256 257 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
257 258 5.847111 TGCTCCGTATATAGTCACTTGTT 57.153 39.130 0.00 0.00 0.00 2.83
258 259 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
259 260 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
260 261 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
261 262 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
262 263 7.438459 GCTCCGTATATAGTCACTTGTTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
263 264 9.961265 CTCCGTATATAGTCACTTGTTGAAATA 57.039 33.333 0.00 0.00 35.39 1.40
290 291 9.169592 TCTAAAAAGACTTATATTTGGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
291 292 9.169592 CTAAAAAGACTTATATTTGGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
292 293 7.625828 AAAAGACTTATATTTGGGAACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
293 294 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
294 295 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
295 296 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
296 297 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
297 298 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
298 299 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
299 300 0.978907 TTTGGGAACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
300 301 0.115745 TTGGGAACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
301 302 1.002069 TGGGAACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
302 303 1.572415 TGGGAACGGAGGGAGTACTAT 59.428 52.381 0.00 0.00 0.00 2.12
303 304 1.962100 GGGAACGGAGGGAGTACTATG 59.038 57.143 0.00 0.00 0.00 2.23
304 305 2.664015 GGAACGGAGGGAGTACTATGT 58.336 52.381 0.00 0.00 0.00 2.29
305 306 3.435601 GGGAACGGAGGGAGTACTATGTA 60.436 52.174 0.00 0.00 0.00 2.29
306 307 4.405548 GGAACGGAGGGAGTACTATGTAT 58.594 47.826 0.00 0.00 0.00 2.29
307 308 5.515534 GGGAACGGAGGGAGTACTATGTATA 60.516 48.000 0.00 0.00 0.00 1.47
308 309 5.647225 GGAACGGAGGGAGTACTATGTATAG 59.353 48.000 0.00 0.00 36.46 1.31
309 310 5.839517 ACGGAGGGAGTACTATGTATAGT 57.160 43.478 9.31 9.31 45.08 2.12
310 311 6.198237 ACGGAGGGAGTACTATGTATAGTT 57.802 41.667 9.60 0.00 43.06 2.24
311 312 6.608922 ACGGAGGGAGTACTATGTATAGTTT 58.391 40.000 9.60 0.27 43.06 2.66
312 313 7.065504 ACGGAGGGAGTACTATGTATAGTTTT 58.934 38.462 9.60 0.00 43.06 2.43
313 314 8.220559 ACGGAGGGAGTACTATGTATAGTTTTA 58.779 37.037 9.60 0.00 43.06 1.52
314 315 8.728833 CGGAGGGAGTACTATGTATAGTTTTAG 58.271 40.741 9.60 0.00 43.06 1.85
315 316 9.804977 GGAGGGAGTACTATGTATAGTTTTAGA 57.195 37.037 9.60 0.00 43.06 2.10
331 332 7.551035 AGTTTTAGATTTGAGATAGCAGCAG 57.449 36.000 0.00 0.00 0.00 4.24
332 333 5.998454 TTTAGATTTGAGATAGCAGCAGC 57.002 39.130 0.00 0.00 42.56 5.25
347 348 4.606071 AGCGGACTGAATCTGTGC 57.394 55.556 0.00 0.00 35.91 4.57
348 349 1.673477 AGCGGACTGAATCTGTGCA 59.327 52.632 11.69 0.00 35.91 4.57
349 350 0.671781 AGCGGACTGAATCTGTGCAC 60.672 55.000 10.75 10.75 35.91 4.57
350 351 1.639298 GCGGACTGAATCTGTGCACC 61.639 60.000 15.69 0.00 35.91 5.01
351 352 0.036952 CGGACTGAATCTGTGCACCT 60.037 55.000 15.69 0.00 0.00 4.00
352 353 1.204704 CGGACTGAATCTGTGCACCTA 59.795 52.381 15.69 1.99 0.00 3.08
353 354 2.736719 CGGACTGAATCTGTGCACCTAG 60.737 54.545 15.69 6.07 0.00 3.02
354 355 2.275318 GACTGAATCTGTGCACCTAGC 58.725 52.381 15.69 0.50 45.96 3.42
355 356 1.065854 ACTGAATCTGTGCACCTAGCC 60.066 52.381 15.69 1.47 44.83 3.93
356 357 0.983467 TGAATCTGTGCACCTAGCCA 59.017 50.000 15.69 4.31 44.83 4.75
357 358 1.561076 TGAATCTGTGCACCTAGCCAT 59.439 47.619 15.69 0.00 44.83 4.40
358 359 2.216898 GAATCTGTGCACCTAGCCATC 58.783 52.381 15.69 0.00 44.83 3.51
359 360 1.206878 ATCTGTGCACCTAGCCATCA 58.793 50.000 15.69 0.00 44.83 3.07
360 361 1.206878 TCTGTGCACCTAGCCATCAT 58.793 50.000 15.69 0.00 44.83 2.45
361 362 1.139654 TCTGTGCACCTAGCCATCATC 59.860 52.381 15.69 0.00 44.83 2.92
362 363 0.911053 TGTGCACCTAGCCATCATCA 59.089 50.000 15.69 0.00 44.83 3.07
363 364 1.303309 GTGCACCTAGCCATCATCAC 58.697 55.000 5.22 0.00 44.83 3.06
364 365 1.134280 GTGCACCTAGCCATCATCACT 60.134 52.381 5.22 0.00 44.83 3.41
365 366 1.561076 TGCACCTAGCCATCATCACTT 59.439 47.619 0.00 0.00 44.83 3.16
366 367 2.216898 GCACCTAGCCATCATCACTTC 58.783 52.381 0.00 0.00 37.23 3.01
367 368 2.420547 GCACCTAGCCATCATCACTTCA 60.421 50.000 0.00 0.00 37.23 3.02
368 369 3.464907 CACCTAGCCATCATCACTTCAG 58.535 50.000 0.00 0.00 0.00 3.02
369 370 3.110705 ACCTAGCCATCATCACTTCAGT 58.889 45.455 0.00 0.00 0.00 3.41
370 371 4.100035 CACCTAGCCATCATCACTTCAGTA 59.900 45.833 0.00 0.00 0.00 2.74
371 372 4.100189 ACCTAGCCATCATCACTTCAGTAC 59.900 45.833 0.00 0.00 0.00 2.73
372 373 4.343526 CCTAGCCATCATCACTTCAGTACT 59.656 45.833 0.00 0.00 0.00 2.73
373 374 5.536538 CCTAGCCATCATCACTTCAGTACTA 59.463 44.000 0.00 0.00 0.00 1.82
374 375 5.269505 AGCCATCATCACTTCAGTACTAC 57.730 43.478 0.00 0.00 0.00 2.73
375 376 4.100189 AGCCATCATCACTTCAGTACTACC 59.900 45.833 0.00 0.00 0.00 3.18
376 377 4.141937 GCCATCATCACTTCAGTACTACCA 60.142 45.833 0.00 0.00 0.00 3.25
377 378 5.626809 GCCATCATCACTTCAGTACTACCAA 60.627 44.000 0.00 0.00 0.00 3.67
378 379 6.406370 CCATCATCACTTCAGTACTACCAAA 58.594 40.000 0.00 0.00 0.00 3.28
379 380 6.313905 CCATCATCACTTCAGTACTACCAAAC 59.686 42.308 0.00 0.00 0.00 2.93
380 381 6.665992 TCATCACTTCAGTACTACCAAACT 57.334 37.500 0.00 0.00 0.00 2.66
381 382 7.770366 TCATCACTTCAGTACTACCAAACTA 57.230 36.000 0.00 0.00 0.00 2.24
382 383 7.600065 TCATCACTTCAGTACTACCAAACTAC 58.400 38.462 0.00 0.00 0.00 2.73
383 384 7.450634 TCATCACTTCAGTACTACCAAACTACT 59.549 37.037 0.00 0.00 0.00 2.57
384 385 8.737175 CATCACTTCAGTACTACCAAACTACTA 58.263 37.037 0.00 0.00 0.00 1.82
385 386 8.874744 TCACTTCAGTACTACCAAACTACTAT 57.125 34.615 0.00 0.00 0.00 2.12
386 387 8.954350 TCACTTCAGTACTACCAAACTACTATC 58.046 37.037 0.00 0.00 0.00 2.08
387 388 8.737175 CACTTCAGTACTACCAAACTACTATCA 58.263 37.037 0.00 0.00 0.00 2.15
388 389 8.738106 ACTTCAGTACTACCAAACTACTATCAC 58.262 37.037 0.00 0.00 0.00 3.06
389 390 8.640063 TTCAGTACTACCAAACTACTATCACA 57.360 34.615 0.00 0.00 0.00 3.58
390 391 8.277490 TCAGTACTACCAAACTACTATCACAG 57.723 38.462 0.00 0.00 0.00 3.66
391 392 7.338703 TCAGTACTACCAAACTACTATCACAGG 59.661 40.741 0.00 0.00 0.00 4.00
392 393 5.934402 ACTACCAAACTACTATCACAGGG 57.066 43.478 0.00 0.00 0.00 4.45
393 394 3.629142 ACCAAACTACTATCACAGGGC 57.371 47.619 0.00 0.00 0.00 5.19
394 395 2.910319 ACCAAACTACTATCACAGGGCA 59.090 45.455 0.00 0.00 0.00 5.36
395 396 3.329520 ACCAAACTACTATCACAGGGCAA 59.670 43.478 0.00 0.00 0.00 4.52
396 397 4.202524 ACCAAACTACTATCACAGGGCAAA 60.203 41.667 0.00 0.00 0.00 3.68
397 398 4.764823 CCAAACTACTATCACAGGGCAAAA 59.235 41.667 0.00 0.00 0.00 2.44
398 399 5.106157 CCAAACTACTATCACAGGGCAAAAG 60.106 44.000 0.00 0.00 0.00 2.27
399 400 5.499004 AACTACTATCACAGGGCAAAAGA 57.501 39.130 0.00 0.00 0.00 2.52
400 401 5.499004 ACTACTATCACAGGGCAAAAGAA 57.501 39.130 0.00 0.00 0.00 2.52
401 402 5.876357 ACTACTATCACAGGGCAAAAGAAA 58.124 37.500 0.00 0.00 0.00 2.52
402 403 5.705905 ACTACTATCACAGGGCAAAAGAAAC 59.294 40.000 0.00 0.00 0.00 2.78
403 404 3.826729 ACTATCACAGGGCAAAAGAAACC 59.173 43.478 0.00 0.00 0.00 3.27
404 405 1.028905 TCACAGGGCAAAAGAAACCG 58.971 50.000 0.00 0.00 0.00 4.44
405 406 1.028905 CACAGGGCAAAAGAAACCGA 58.971 50.000 0.00 0.00 0.00 4.69
406 407 1.001378 CACAGGGCAAAAGAAACCGAG 60.001 52.381 0.00 0.00 0.00 4.63
407 408 0.039165 CAGGGCAAAAGAAACCGAGC 60.039 55.000 0.00 0.00 0.00 5.03
408 409 1.081442 GGGCAAAAGAAACCGAGCG 60.081 57.895 0.00 0.00 0.00 5.03
418 419 2.681344 AGAAACCGAGCGTGTTTTCTTT 59.319 40.909 9.59 0.00 36.13 2.52
419 420 3.872771 AGAAACCGAGCGTGTTTTCTTTA 59.127 39.130 9.59 0.00 36.13 1.85
422 423 3.395639 ACCGAGCGTGTTTTCTTTATGA 58.604 40.909 0.00 0.00 0.00 2.15
424 425 5.172934 ACCGAGCGTGTTTTCTTTATGATA 58.827 37.500 0.00 0.00 0.00 2.15
425 426 5.640357 ACCGAGCGTGTTTTCTTTATGATAA 59.360 36.000 0.00 0.00 0.00 1.75
427 428 6.846283 CCGAGCGTGTTTTCTTTATGATAATC 59.154 38.462 0.00 0.00 0.00 1.75
432 433 7.180079 CGTGTTTTCTTTATGATAATCGTGCT 58.820 34.615 0.00 0.00 0.00 4.40
433 434 8.325282 CGTGTTTTCTTTATGATAATCGTGCTA 58.675 33.333 0.00 0.00 0.00 3.49
447 448 9.371136 GATAATCGTGCTAAAATCTCATATCCA 57.629 33.333 0.00 0.00 0.00 3.41
448 449 9.896645 ATAATCGTGCTAAAATCTCATATCCAT 57.103 29.630 0.00 0.00 0.00 3.41
449 450 7.606858 ATCGTGCTAAAATCTCATATCCATG 57.393 36.000 0.00 0.00 0.00 3.66
450 451 6.758254 TCGTGCTAAAATCTCATATCCATGA 58.242 36.000 0.00 0.00 38.90 3.07
451 452 7.389232 TCGTGCTAAAATCTCATATCCATGAT 58.611 34.615 0.00 0.00 40.40 2.45
453 454 7.548427 CGTGCTAAAATCTCATATCCATGATCT 59.452 37.037 0.00 0.00 40.40 2.75
454 455 8.881743 GTGCTAAAATCTCATATCCATGATCTC 58.118 37.037 0.00 0.00 40.40 2.75
455 456 7.763071 TGCTAAAATCTCATATCCATGATCTCG 59.237 37.037 0.00 0.00 40.40 4.04
456 457 7.978414 GCTAAAATCTCATATCCATGATCTCGA 59.022 37.037 0.00 0.00 40.40 4.04
465 466 8.262933 TCATATCCATGATCTCGATTTAGCATT 58.737 33.333 0.00 0.00 36.22 3.56
466 467 6.738832 ATCCATGATCTCGATTTAGCATTG 57.261 37.500 0.00 0.00 0.00 2.82
468 469 4.999311 CCATGATCTCGATTTAGCATTGGA 59.001 41.667 0.00 0.00 0.00 3.53
469 470 5.121925 CCATGATCTCGATTTAGCATTGGAG 59.878 44.000 0.00 0.00 0.00 3.86
470 471 4.060900 TGATCTCGATTTAGCATTGGAGC 58.939 43.478 0.00 0.00 0.00 4.70
471 472 2.838736 TCTCGATTTAGCATTGGAGCC 58.161 47.619 0.00 0.00 34.23 4.70
472 473 2.170397 TCTCGATTTAGCATTGGAGCCA 59.830 45.455 0.00 0.00 34.23 4.75
473 474 3.144506 CTCGATTTAGCATTGGAGCCAT 58.855 45.455 0.00 0.00 34.23 4.40
474 475 4.040339 TCTCGATTTAGCATTGGAGCCATA 59.960 41.667 0.00 0.00 34.23 2.74
475 476 4.318332 TCGATTTAGCATTGGAGCCATAG 58.682 43.478 0.00 0.00 34.23 2.23
476 477 3.438087 CGATTTAGCATTGGAGCCATAGG 59.562 47.826 0.00 0.00 34.23 2.57
477 478 4.655963 GATTTAGCATTGGAGCCATAGGA 58.344 43.478 0.00 0.00 34.23 2.94
478 479 4.518278 TTTAGCATTGGAGCCATAGGAA 57.482 40.909 0.00 0.00 34.23 3.36
479 480 2.355010 AGCATTGGAGCCATAGGAAC 57.645 50.000 0.00 0.00 34.23 3.62
482 483 2.684927 GCATTGGAGCCATAGGAACAGT 60.685 50.000 0.00 0.00 0.00 3.55
485 486 2.265367 TGGAGCCATAGGAACAGTGAA 58.735 47.619 0.00 0.00 0.00 3.18
486 487 2.642311 TGGAGCCATAGGAACAGTGAAA 59.358 45.455 0.00 0.00 0.00 2.69
487 488 3.010420 GGAGCCATAGGAACAGTGAAAC 58.990 50.000 0.00 0.00 0.00 2.78
488 489 2.673368 GAGCCATAGGAACAGTGAAACG 59.327 50.000 0.00 0.00 45.86 3.60
489 490 2.038557 AGCCATAGGAACAGTGAAACGT 59.961 45.455 0.00 0.00 45.86 3.99
491 492 2.742053 CCATAGGAACAGTGAAACGTGG 59.258 50.000 0.00 0.00 45.86 4.94
493 494 0.179029 AGGAACAGTGAAACGTGGGG 60.179 55.000 0.00 0.00 45.86 4.96
494 495 0.179040 GGAACAGTGAAACGTGGGGA 60.179 55.000 0.00 0.00 45.86 4.81
497 498 0.036306 ACAGTGAAACGTGGGGATCC 59.964 55.000 1.92 1.92 45.86 3.36
498 499 0.676782 CAGTGAAACGTGGGGATCCC 60.677 60.000 23.95 23.95 45.86 3.85
511 527 3.092511 ATCCCAGGCAGGCACGAT 61.093 61.111 0.00 0.00 35.39 3.73
531 547 4.394712 CTGGTCCGGTCCTGGCAC 62.395 72.222 18.85 0.00 0.00 5.01
534 550 2.351276 GTCCGGTCCTGGCACAAT 59.649 61.111 0.00 0.00 38.70 2.71
538 554 0.322098 CCGGTCCTGGCACAATAACA 60.322 55.000 0.00 0.00 38.70 2.41
539 555 1.529226 CGGTCCTGGCACAATAACAA 58.471 50.000 0.00 0.00 38.70 2.83
540 556 2.091541 CGGTCCTGGCACAATAACAAT 58.908 47.619 0.00 0.00 38.70 2.71
541 557 2.491693 CGGTCCTGGCACAATAACAATT 59.508 45.455 0.00 0.00 38.70 2.32
542 558 3.673052 CGGTCCTGGCACAATAACAATTG 60.673 47.826 3.24 3.24 38.70 2.32
543 559 3.509575 GGTCCTGGCACAATAACAATTGA 59.490 43.478 13.59 0.00 38.70 2.57
544 560 4.021544 GGTCCTGGCACAATAACAATTGAA 60.022 41.667 13.59 0.00 38.70 2.69
545 561 5.510520 GGTCCTGGCACAATAACAATTGAAA 60.511 40.000 13.59 0.00 38.70 2.69
546 562 5.405269 GTCCTGGCACAATAACAATTGAAAC 59.595 40.000 13.59 0.00 38.70 2.78
547 563 4.385447 CCTGGCACAATAACAATTGAAACG 59.615 41.667 13.59 0.00 38.70 3.60
548 564 4.938080 TGGCACAATAACAATTGAAACGT 58.062 34.783 13.59 0.00 35.60 3.99
550 566 4.149747 GGCACAATAACAATTGAAACGTGG 59.850 41.667 13.59 0.00 35.60 4.94
551 567 4.149747 GCACAATAACAATTGAAACGTGGG 59.850 41.667 13.59 5.70 35.60 4.61
552 568 4.683781 CACAATAACAATTGAAACGTGGGG 59.316 41.667 13.59 0.00 35.60 4.96
553 569 4.585162 ACAATAACAATTGAAACGTGGGGA 59.415 37.500 13.59 0.00 35.60 4.81
555 571 3.726291 AACAATTGAAACGTGGGGAAG 57.274 42.857 13.59 0.00 0.00 3.46
556 572 2.661718 ACAATTGAAACGTGGGGAAGT 58.338 42.857 13.59 0.00 0.00 3.01
557 573 2.360801 ACAATTGAAACGTGGGGAAGTG 59.639 45.455 13.59 0.00 0.00 3.16
559 575 2.131776 TTGAAACGTGGGGAAGTGTT 57.868 45.000 0.00 0.00 0.00 3.32
560 576 3.278668 TTGAAACGTGGGGAAGTGTTA 57.721 42.857 0.00 0.00 0.00 2.41
561 577 3.278668 TGAAACGTGGGGAAGTGTTAA 57.721 42.857 0.00 0.00 0.00 2.01
562 578 3.618351 TGAAACGTGGGGAAGTGTTAAA 58.382 40.909 0.00 0.00 0.00 1.52
564 580 4.461781 TGAAACGTGGGGAAGTGTTAAAAA 59.538 37.500 0.00 0.00 0.00 1.94
618 634 0.327259 CCCATCCTCGATCATGCCAT 59.673 55.000 0.00 0.00 0.00 4.40
630 646 3.885724 TCATGCCATTCGTCTGAACTA 57.114 42.857 0.00 0.00 36.81 2.24
641 660 2.231478 CGTCTGAACTAAAGAGAGGCCA 59.769 50.000 5.01 0.00 0.00 5.36
741 763 3.692406 GAGCCGAGGAACACCCGT 61.692 66.667 0.00 0.00 40.87 5.28
791 814 1.546773 CCTCACCCGAAACCAAATCCA 60.547 52.381 0.00 0.00 0.00 3.41
792 815 1.812571 CTCACCCGAAACCAAATCCAG 59.187 52.381 0.00 0.00 0.00 3.86
807 830 2.659063 CCAGACCATCCACGCCTCA 61.659 63.158 0.00 0.00 0.00 3.86
853 876 2.221299 CCTCCCCTCCCGAAACACA 61.221 63.158 0.00 0.00 0.00 3.72
866 899 0.307760 AAACACAAGAGCGCGGAAAG 59.692 50.000 8.83 0.00 0.00 2.62
1443 2631 3.640967 AGAATCCTAGTGTCTGATCTGGC 59.359 47.826 0.00 0.00 0.00 4.85
1525 2716 2.215196 GACGGTTGTGTTATGGTGTGT 58.785 47.619 0.00 0.00 0.00 3.72
1526 2717 1.944024 ACGGTTGTGTTATGGTGTGTG 59.056 47.619 0.00 0.00 0.00 3.82
1527 2718 1.944024 CGGTTGTGTTATGGTGTGTGT 59.056 47.619 0.00 0.00 0.00 3.72
1528 2719 2.286713 CGGTTGTGTTATGGTGTGTGTG 60.287 50.000 0.00 0.00 0.00 3.82
1529 2720 2.685897 GGTTGTGTTATGGTGTGTGTGT 59.314 45.455 0.00 0.00 0.00 3.72
1530 2721 3.488384 GGTTGTGTTATGGTGTGTGTGTG 60.488 47.826 0.00 0.00 0.00 3.82
1564 2760 8.627208 GATGGTACCATCTTGTTATCATCATT 57.373 34.615 37.29 9.78 46.67 2.57
1566 2762 9.730705 ATGGTACCATCTTGTTATCATCATTAG 57.269 33.333 22.23 0.00 29.42 1.73
1570 2767 7.000472 ACCATCTTGTTATCATCATTAGTGGG 59.000 38.462 0.00 0.00 0.00 4.61
1572 2769 7.720957 CCATCTTGTTATCATCATTAGTGGGAA 59.279 37.037 0.00 0.00 0.00 3.97
1573 2770 8.781196 CATCTTGTTATCATCATTAGTGGGAAG 58.219 37.037 0.00 0.00 0.00 3.46
1575 2772 8.328758 TCTTGTTATCATCATTAGTGGGAAGTT 58.671 33.333 0.00 0.00 0.00 2.66
1576 2773 9.613428 CTTGTTATCATCATTAGTGGGAAGTTA 57.387 33.333 0.00 0.00 0.00 2.24
1577 2774 9.613428 TTGTTATCATCATTAGTGGGAAGTTAG 57.387 33.333 0.00 0.00 0.00 2.34
1578 2775 7.715249 TGTTATCATCATTAGTGGGAAGTTAGC 59.285 37.037 0.00 0.00 0.00 3.09
1639 2867 5.644636 TCTCAGTAAACGTTTTGGTTTGTCT 59.355 36.000 20.19 3.00 40.18 3.41
1643 2871 9.275398 TCAGTAAACGTTTTGGTTTGTCTATAT 57.725 29.630 20.19 0.00 40.18 0.86
1721 2952 2.579873 ACATGAGGTTCATATGCCAGC 58.420 47.619 0.00 0.00 34.28 4.85
1722 2953 2.092267 ACATGAGGTTCATATGCCAGCA 60.092 45.455 0.00 0.00 34.28 4.41
1723 2954 2.804986 TGAGGTTCATATGCCAGCAA 57.195 45.000 0.00 0.00 0.00 3.91
1724 2955 3.084536 TGAGGTTCATATGCCAGCAAA 57.915 42.857 0.00 0.00 0.00 3.68
1725 2956 3.634504 TGAGGTTCATATGCCAGCAAAT 58.365 40.909 0.00 0.00 0.00 2.32
1726 2957 3.382227 TGAGGTTCATATGCCAGCAAATG 59.618 43.478 0.00 0.00 0.00 2.32
1727 2958 2.101917 AGGTTCATATGCCAGCAAATGC 59.898 45.455 0.00 0.00 42.49 3.56
1728 2959 2.159071 GGTTCATATGCCAGCAAATGCA 60.159 45.455 8.28 0.00 45.16 3.96
1729 2960 2.861935 GTTCATATGCCAGCAAATGCAC 59.138 45.455 8.28 0.00 45.16 4.57
1730 2961 2.100989 TCATATGCCAGCAAATGCACA 58.899 42.857 8.28 3.38 45.16 4.57
1731 2962 2.496470 TCATATGCCAGCAAATGCACAA 59.504 40.909 8.28 0.00 45.16 3.33
1732 2963 2.367030 TATGCCAGCAAATGCACAAC 57.633 45.000 8.28 0.00 45.16 3.32
1733 2964 0.393448 ATGCCAGCAAATGCACAACA 59.607 45.000 8.28 0.89 45.16 3.33
1734 2965 0.177373 TGCCAGCAAATGCACAACAA 59.823 45.000 8.28 0.00 45.16 2.83
1735 2966 0.863144 GCCAGCAAATGCACAACAAG 59.137 50.000 8.28 0.00 45.16 3.16
1736 2967 1.504359 CCAGCAAATGCACAACAAGG 58.496 50.000 8.28 0.00 45.16 3.61
1737 2968 1.202557 CCAGCAAATGCACAACAAGGT 60.203 47.619 8.28 0.00 45.16 3.50
1738 2969 1.862201 CAGCAAATGCACAACAAGGTG 59.138 47.619 8.28 0.00 45.16 4.00
1739 2970 1.755959 AGCAAATGCACAACAAGGTGA 59.244 42.857 8.28 0.00 45.16 4.02
1740 2971 2.129607 GCAAATGCACAACAAGGTGAG 58.870 47.619 0.00 0.00 41.32 3.51
1741 2972 2.129607 CAAATGCACAACAAGGTGAGC 58.870 47.619 0.39 0.39 41.32 4.26
1742 2973 1.401761 AATGCACAACAAGGTGAGCA 58.598 45.000 12.35 12.35 46.74 4.26
1743 2974 0.956633 ATGCACAACAAGGTGAGCAG 59.043 50.000 14.97 0.00 46.06 4.24
1744 2975 1.008079 GCACAACAAGGTGAGCAGC 60.008 57.895 2.62 0.00 41.32 5.25
1745 2976 1.727511 GCACAACAAGGTGAGCAGCA 61.728 55.000 2.62 0.00 41.32 4.41
1746 2977 0.309922 CACAACAAGGTGAGCAGCAG 59.690 55.000 0.00 0.00 41.32 4.24
1747 2978 1.285023 CAACAAGGTGAGCAGCAGC 59.715 57.895 0.00 0.00 45.24 5.25
1752 2983 3.054503 GGTGAGCAGCAGCAGGTG 61.055 66.667 3.17 3.63 44.31 4.00
1753 2984 2.281345 GTGAGCAGCAGCAGGTGT 60.281 61.111 10.14 0.00 44.89 4.16
1754 2985 2.031616 TGAGCAGCAGCAGGTGTC 59.968 61.111 10.14 6.98 44.89 3.67
1755 2986 2.031616 GAGCAGCAGCAGGTGTCA 59.968 61.111 10.14 0.00 44.89 3.58
1787 3021 1.377333 GCCCCTGCTCACCTTGTAC 60.377 63.158 0.00 0.00 33.53 2.90
1788 3022 1.842381 GCCCCTGCTCACCTTGTACT 61.842 60.000 0.00 0.00 33.53 2.73
1812 3062 2.592102 TGCCCTTGCTCTCTCAATTT 57.408 45.000 0.00 0.00 38.71 1.82
1818 3068 5.707931 CCCTTGCTCTCTCAATTTCTTTTC 58.292 41.667 0.00 0.00 0.00 2.29
1843 3093 5.509498 CCCCTTTTGATGGATACTCTCAAA 58.491 41.667 3.06 3.06 42.85 2.69
1845 3095 6.608808 CCCCTTTTGATGGATACTCTCAAATT 59.391 38.462 6.97 0.00 43.48 1.82
1868 3118 3.146066 TGTGTGGAAAGGAACATAGTGC 58.854 45.455 0.00 0.00 0.00 4.40
1892 3143 6.372659 GCATTGGATAACTGTCTCTTCTTTGA 59.627 38.462 0.00 0.00 0.00 2.69
1913 3164 5.820131 TGACTACAATGTTGTGCTTTTGAG 58.180 37.500 5.03 0.00 42.31 3.02
1989 3245 5.887754 AGGTTGTCCCATAAACAAGTGTAT 58.112 37.500 0.00 0.00 37.30 2.29
1990 3246 5.944007 AGGTTGTCCCATAAACAAGTGTATC 59.056 40.000 0.00 0.00 37.30 2.24
2029 3314 2.483188 GGGTGTGTATCCGTGGAAGATC 60.483 54.545 0.00 0.00 0.00 2.75
2176 3470 6.811253 TTAATAAACTTTGTGAGTCGCCAT 57.189 33.333 0.23 0.00 37.72 4.40
2179 3473 0.593128 ACTTTGTGAGTCGCCATTGC 59.407 50.000 0.23 0.00 31.20 3.56
2265 3566 9.184523 AGGCATTTGTTATTAAGTAGCACATAA 57.815 29.630 0.00 0.00 0.00 1.90
2373 3675 3.443681 CAGTTGGGTTGTTTGTTGTCTCT 59.556 43.478 0.00 0.00 0.00 3.10
2402 3704 2.005451 GCATCACTTTCTCAGCGATGT 58.995 47.619 0.00 0.00 42.14 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.165270 GGCACACCAAACTCGCTAAT 58.835 50.000 0.00 0.00 35.26 1.73
1 2 0.179043 TGGCACACCAAACTCGCTAA 60.179 50.000 0.00 0.00 45.37 3.09
2 3 1.448069 TGGCACACCAAACTCGCTA 59.552 52.632 0.00 0.00 45.37 4.26
3 4 2.191908 TGGCACACCAAACTCGCT 59.808 55.556 0.00 0.00 45.37 4.93
14 15 1.210234 CTGGTCCATGATACTGGCACA 59.790 52.381 0.00 0.00 36.16 4.57
78 79 8.762645 TCCTTCATCTAAGTACAGACATTTCAT 58.237 33.333 0.00 0.00 32.89 2.57
87 88 5.578005 TCGGTTCCTTCATCTAAGTACAG 57.422 43.478 0.00 0.00 32.89 2.74
96 97 4.546570 CCAAAAGTTTCGGTTCCTTCATC 58.453 43.478 0.00 0.00 0.00 2.92
97 98 3.320826 CCCAAAAGTTTCGGTTCCTTCAT 59.679 43.478 0.00 0.00 0.00 2.57
106 107 1.269569 GGCAAGTCCCAAAAGTTTCGG 60.270 52.381 0.00 0.00 0.00 4.30
107 108 1.407258 TGGCAAGTCCCAAAAGTTTCG 59.593 47.619 0.00 0.00 30.32 3.46
125 126 1.901085 GGAGGGAGTACTGCAGTGG 59.099 63.158 29.57 0.00 0.00 4.00
126 127 1.251527 ACGGAGGGAGTACTGCAGTG 61.252 60.000 29.57 11.40 0.00 3.66
127 128 0.542232 AACGGAGGGAGTACTGCAGT 60.542 55.000 25.12 25.12 0.00 4.40
128 129 0.173708 GAACGGAGGGAGTACTGCAG 59.826 60.000 16.81 13.48 0.00 4.41
131 132 2.431954 TAGGAACGGAGGGAGTACTG 57.568 55.000 0.00 0.00 0.00 2.74
132 133 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
133 134 3.450096 ACATTTAGGAACGGAGGGAGTAC 59.550 47.826 0.00 0.00 0.00 2.73
134 135 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
135 136 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
138 139 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
139 140 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
140 141 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
141 142 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
142 143 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
169 170 9.887629 TCCGTATGTTGTAGTCCATTTAAAATA 57.112 29.630 0.00 0.00 0.00 1.40
170 171 8.795842 TCCGTATGTTGTAGTCCATTTAAAAT 57.204 30.769 0.00 0.00 0.00 1.82
171 172 8.670135 CATCCGTATGTTGTAGTCCATTTAAAA 58.330 33.333 0.00 0.00 0.00 1.52
172 173 7.825270 ACATCCGTATGTTGTAGTCCATTTAAA 59.175 33.333 0.00 0.00 44.07 1.52
173 174 7.332557 ACATCCGTATGTTGTAGTCCATTTAA 58.667 34.615 0.00 0.00 44.07 1.52
174 175 6.880484 ACATCCGTATGTTGTAGTCCATTTA 58.120 36.000 0.00 0.00 44.07 1.40
176 177 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
178 179 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
217 218 6.092259 ACGGAGCAAAATAAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
218 219 6.170506 ACGGAGCAAAATAAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
224 225 9.472361 GACTATATACGGAGCAAAATAAGTGAA 57.528 33.333 0.00 0.00 0.00 3.18
225 226 8.635328 TGACTATATACGGAGCAAAATAAGTGA 58.365 33.333 0.00 0.00 0.00 3.41
226 227 8.700644 GTGACTATATACGGAGCAAAATAAGTG 58.299 37.037 0.00 0.00 0.00 3.16
227 228 8.639761 AGTGACTATATACGGAGCAAAATAAGT 58.360 33.333 0.00 0.00 0.00 2.24
228 229 9.477484 AAGTGACTATATACGGAGCAAAATAAG 57.523 33.333 0.00 0.00 0.00 1.73
229 230 9.256477 CAAGTGACTATATACGGAGCAAAATAA 57.744 33.333 0.00 0.00 0.00 1.40
230 231 8.418662 ACAAGTGACTATATACGGAGCAAAATA 58.581 33.333 0.00 0.00 0.00 1.40
231 232 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
232 233 6.636705 ACAAGTGACTATATACGGAGCAAAA 58.363 36.000 0.00 0.00 0.00 2.44
233 234 6.216801 ACAAGTGACTATATACGGAGCAAA 57.783 37.500 0.00 0.00 0.00 3.68
234 235 5.847111 ACAAGTGACTATATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
235 236 5.358725 TCAACAAGTGACTATATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
236 237 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
237 238 8.873215 ATTTCAACAAGTGACTATATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
264 265 9.169592 CCGTTCCCAAATATAAGTCTTTTTAGA 57.830 33.333 0.00 0.00 0.00 2.10
265 266 9.169592 TCCGTTCCCAAATATAAGTCTTTTTAG 57.830 33.333 0.00 0.00 0.00 1.85
266 267 9.169592 CTCCGTTCCCAAATATAAGTCTTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
267 268 7.122204 CCTCCGTTCCCAAATATAAGTCTTTTT 59.878 37.037 0.00 0.00 0.00 1.94
268 269 6.602009 CCTCCGTTCCCAAATATAAGTCTTTT 59.398 38.462 0.00 0.00 0.00 2.27
269 270 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
270 271 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
271 272 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
272 273 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
273 274 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
274 275 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
275 276 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
276 277 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
277 278 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
278 279 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
279 280 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
280 281 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
281 282 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
282 283 1.002069 TAGTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
283 284 1.962100 CATAGTACTCCCTCCGTTCCC 59.038 57.143 0.00 0.00 0.00 3.97
284 285 2.664015 ACATAGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
285 286 6.237154 ACTATACATAGTACTCCCTCCGTTC 58.763 44.000 0.00 0.00 41.55 3.95
286 287 6.198237 ACTATACATAGTACTCCCTCCGTT 57.802 41.667 0.00 0.00 41.55 4.44
287 288 5.839517 ACTATACATAGTACTCCCTCCGT 57.160 43.478 0.00 0.00 41.55 4.69
288 289 7.521871 AAAACTATACATAGTACTCCCTCCG 57.478 40.000 0.00 0.00 42.47 4.63
289 290 9.804977 TCTAAAACTATACATAGTACTCCCTCC 57.195 37.037 0.00 0.00 42.47 4.30
305 306 9.270640 CTGCTGCTATCTCAAATCTAAAACTAT 57.729 33.333 0.00 0.00 0.00 2.12
306 307 7.225538 GCTGCTGCTATCTCAAATCTAAAACTA 59.774 37.037 8.53 0.00 36.03 2.24
307 308 6.038050 GCTGCTGCTATCTCAAATCTAAAACT 59.962 38.462 8.53 0.00 36.03 2.66
308 309 6.197981 GCTGCTGCTATCTCAAATCTAAAAC 58.802 40.000 8.53 0.00 36.03 2.43
309 310 5.007039 CGCTGCTGCTATCTCAAATCTAAAA 59.993 40.000 14.03 0.00 36.97 1.52
310 311 4.509230 CGCTGCTGCTATCTCAAATCTAAA 59.491 41.667 14.03 0.00 36.97 1.85
311 312 4.053983 CGCTGCTGCTATCTCAAATCTAA 58.946 43.478 14.03 0.00 36.97 2.10
312 313 3.553715 CCGCTGCTGCTATCTCAAATCTA 60.554 47.826 14.03 0.00 36.97 1.98
313 314 2.481854 CGCTGCTGCTATCTCAAATCT 58.518 47.619 14.03 0.00 36.97 2.40
314 315 1.530293 CCGCTGCTGCTATCTCAAATC 59.470 52.381 14.03 0.00 36.97 2.17
315 316 1.139654 TCCGCTGCTGCTATCTCAAAT 59.860 47.619 14.03 0.00 36.97 2.32
316 317 0.536724 TCCGCTGCTGCTATCTCAAA 59.463 50.000 14.03 0.00 36.97 2.69
317 318 0.179100 GTCCGCTGCTGCTATCTCAA 60.179 55.000 14.03 0.00 36.97 3.02
318 319 1.039785 AGTCCGCTGCTGCTATCTCA 61.040 55.000 14.03 0.00 36.97 3.27
319 320 0.597118 CAGTCCGCTGCTGCTATCTC 60.597 60.000 14.03 0.36 35.77 2.75
320 321 1.039785 TCAGTCCGCTGCTGCTATCT 61.040 55.000 14.03 5.84 42.29 1.98
321 322 0.179100 TTCAGTCCGCTGCTGCTATC 60.179 55.000 14.03 3.69 42.29 2.08
322 323 0.467384 ATTCAGTCCGCTGCTGCTAT 59.533 50.000 14.03 0.00 42.29 2.97
323 324 0.179100 GATTCAGTCCGCTGCTGCTA 60.179 55.000 14.03 0.00 42.29 3.49
324 325 1.449246 GATTCAGTCCGCTGCTGCT 60.449 57.895 14.03 0.00 42.29 4.24
325 326 1.449246 AGATTCAGTCCGCTGCTGC 60.449 57.895 5.34 5.34 42.29 5.25
326 327 0.390866 ACAGATTCAGTCCGCTGCTG 60.391 55.000 0.00 0.00 42.29 4.41
327 328 0.390866 CACAGATTCAGTCCGCTGCT 60.391 55.000 0.00 0.00 42.29 4.24
328 329 1.975363 GCACAGATTCAGTCCGCTGC 61.975 60.000 0.00 0.00 42.29 5.25
329 330 0.671472 TGCACAGATTCAGTCCGCTG 60.671 55.000 0.00 0.00 43.87 5.18
330 331 0.671781 GTGCACAGATTCAGTCCGCT 60.672 55.000 13.17 0.00 0.00 5.52
331 332 1.639298 GGTGCACAGATTCAGTCCGC 61.639 60.000 20.43 0.00 0.00 5.54
332 333 0.036952 AGGTGCACAGATTCAGTCCG 60.037 55.000 20.43 0.00 0.00 4.79
333 334 2.898705 CTAGGTGCACAGATTCAGTCC 58.101 52.381 20.43 0.00 0.00 3.85
334 335 2.275318 GCTAGGTGCACAGATTCAGTC 58.725 52.381 20.43 0.00 42.31 3.51
335 336 1.065854 GGCTAGGTGCACAGATTCAGT 60.066 52.381 20.43 0.00 45.15 3.41
336 337 1.065926 TGGCTAGGTGCACAGATTCAG 60.066 52.381 20.43 6.69 45.15 3.02
337 338 0.983467 TGGCTAGGTGCACAGATTCA 59.017 50.000 20.43 8.19 45.15 2.57
338 339 2.216898 GATGGCTAGGTGCACAGATTC 58.783 52.381 20.43 5.51 45.15 2.52
339 340 1.561076 TGATGGCTAGGTGCACAGATT 59.439 47.619 20.43 3.39 45.15 2.40
340 341 1.206878 TGATGGCTAGGTGCACAGAT 58.793 50.000 20.43 6.43 45.15 2.90
341 342 1.139654 GATGATGGCTAGGTGCACAGA 59.860 52.381 20.43 4.30 45.15 3.41
342 343 1.134310 TGATGATGGCTAGGTGCACAG 60.134 52.381 20.43 9.63 45.15 3.66
343 344 0.911053 TGATGATGGCTAGGTGCACA 59.089 50.000 20.43 0.00 45.15 4.57
344 345 1.134280 AGTGATGATGGCTAGGTGCAC 60.134 52.381 8.80 8.80 45.15 4.57
345 346 1.206878 AGTGATGATGGCTAGGTGCA 58.793 50.000 0.00 0.00 45.15 4.57
346 347 2.216898 GAAGTGATGATGGCTAGGTGC 58.783 52.381 0.00 0.00 41.94 5.01
347 348 3.118482 ACTGAAGTGATGATGGCTAGGTG 60.118 47.826 0.00 0.00 0.00 4.00
348 349 3.110705 ACTGAAGTGATGATGGCTAGGT 58.889 45.455 0.00 0.00 0.00 3.08
349 350 3.834489 ACTGAAGTGATGATGGCTAGG 57.166 47.619 0.00 0.00 0.00 3.02
350 351 5.528043 AGTACTGAAGTGATGATGGCTAG 57.472 43.478 0.00 0.00 0.00 3.42
351 352 5.302059 GGTAGTACTGAAGTGATGATGGCTA 59.698 44.000 5.39 0.00 0.00 3.93
352 353 4.100189 GGTAGTACTGAAGTGATGATGGCT 59.900 45.833 5.39 0.00 0.00 4.75
353 354 4.141937 TGGTAGTACTGAAGTGATGATGGC 60.142 45.833 5.39 0.00 0.00 4.40
354 355 5.598416 TGGTAGTACTGAAGTGATGATGG 57.402 43.478 5.39 0.00 0.00 3.51
355 356 7.099764 AGTTTGGTAGTACTGAAGTGATGATG 58.900 38.462 5.39 0.00 0.00 3.07
356 357 7.246171 AGTTTGGTAGTACTGAAGTGATGAT 57.754 36.000 5.39 0.00 0.00 2.45
357 358 6.665992 AGTTTGGTAGTACTGAAGTGATGA 57.334 37.500 5.39 0.00 0.00 2.92
358 359 7.603651 AGTAGTTTGGTAGTACTGAAGTGATG 58.396 38.462 5.39 0.00 40.68 3.07
359 360 7.778185 AGTAGTTTGGTAGTACTGAAGTGAT 57.222 36.000 5.39 0.00 40.68 3.06
360 361 8.874744 ATAGTAGTTTGGTAGTACTGAAGTGA 57.125 34.615 5.39 0.00 41.91 3.41
361 362 8.737175 TGATAGTAGTTTGGTAGTACTGAAGTG 58.263 37.037 5.39 0.00 41.91 3.16
362 363 8.738106 GTGATAGTAGTTTGGTAGTACTGAAGT 58.262 37.037 5.39 1.26 41.91 3.01
363 364 8.737175 TGTGATAGTAGTTTGGTAGTACTGAAG 58.263 37.037 5.39 0.00 41.91 3.02
364 365 8.640063 TGTGATAGTAGTTTGGTAGTACTGAA 57.360 34.615 5.39 0.00 41.91 3.02
365 366 7.338703 CCTGTGATAGTAGTTTGGTAGTACTGA 59.661 40.741 5.39 0.00 41.91 3.41
366 367 7.416438 CCCTGTGATAGTAGTTTGGTAGTACTG 60.416 44.444 5.39 0.00 41.91 2.74
367 368 6.606395 CCCTGTGATAGTAGTTTGGTAGTACT 59.394 42.308 0.00 0.00 43.74 2.73
368 369 6.682362 GCCCTGTGATAGTAGTTTGGTAGTAC 60.682 46.154 0.00 0.00 33.57 2.73
369 370 5.361857 GCCCTGTGATAGTAGTTTGGTAGTA 59.638 44.000 0.00 0.00 0.00 1.82
370 371 4.161754 GCCCTGTGATAGTAGTTTGGTAGT 59.838 45.833 0.00 0.00 0.00 2.73
371 372 4.161565 TGCCCTGTGATAGTAGTTTGGTAG 59.838 45.833 0.00 0.00 0.00 3.18
372 373 4.098155 TGCCCTGTGATAGTAGTTTGGTA 58.902 43.478 0.00 0.00 0.00 3.25
373 374 2.910319 TGCCCTGTGATAGTAGTTTGGT 59.090 45.455 0.00 0.00 0.00 3.67
374 375 3.627395 TGCCCTGTGATAGTAGTTTGG 57.373 47.619 0.00 0.00 0.00 3.28
375 376 5.705441 TCTTTTGCCCTGTGATAGTAGTTTG 59.295 40.000 0.00 0.00 0.00 2.93
376 377 5.876357 TCTTTTGCCCTGTGATAGTAGTTT 58.124 37.500 0.00 0.00 0.00 2.66
377 378 5.499004 TCTTTTGCCCTGTGATAGTAGTT 57.501 39.130 0.00 0.00 0.00 2.24
378 379 5.499004 TTCTTTTGCCCTGTGATAGTAGT 57.501 39.130 0.00 0.00 0.00 2.73
379 380 5.123979 GGTTTCTTTTGCCCTGTGATAGTAG 59.876 44.000 0.00 0.00 0.00 2.57
380 381 5.007682 GGTTTCTTTTGCCCTGTGATAGTA 58.992 41.667 0.00 0.00 0.00 1.82
381 382 3.826729 GGTTTCTTTTGCCCTGTGATAGT 59.173 43.478 0.00 0.00 0.00 2.12
382 383 3.119849 CGGTTTCTTTTGCCCTGTGATAG 60.120 47.826 0.00 0.00 0.00 2.08
383 384 2.817258 CGGTTTCTTTTGCCCTGTGATA 59.183 45.455 0.00 0.00 0.00 2.15
384 385 1.613437 CGGTTTCTTTTGCCCTGTGAT 59.387 47.619 0.00 0.00 0.00 3.06
385 386 1.028905 CGGTTTCTTTTGCCCTGTGA 58.971 50.000 0.00 0.00 0.00 3.58
386 387 1.001378 CTCGGTTTCTTTTGCCCTGTG 60.001 52.381 0.00 0.00 0.00 3.66
387 388 1.318576 CTCGGTTTCTTTTGCCCTGT 58.681 50.000 0.00 0.00 0.00 4.00
388 389 0.039165 GCTCGGTTTCTTTTGCCCTG 60.039 55.000 0.00 0.00 0.00 4.45
389 390 1.515521 CGCTCGGTTTCTTTTGCCCT 61.516 55.000 0.00 0.00 0.00 5.19
390 391 1.081442 CGCTCGGTTTCTTTTGCCC 60.081 57.895 0.00 0.00 0.00 5.36
391 392 0.660300 CACGCTCGGTTTCTTTTGCC 60.660 55.000 0.00 0.00 0.00 4.52
392 393 0.028902 ACACGCTCGGTTTCTTTTGC 59.971 50.000 0.00 0.00 0.00 3.68
393 394 2.468532 AACACGCTCGGTTTCTTTTG 57.531 45.000 0.00 0.00 0.00 2.44
394 395 3.128068 AGAAAACACGCTCGGTTTCTTTT 59.872 39.130 8.91 0.00 37.47 2.27
395 396 2.681344 AGAAAACACGCTCGGTTTCTTT 59.319 40.909 8.91 0.00 37.47 2.52
396 397 2.285977 AGAAAACACGCTCGGTTTCTT 58.714 42.857 8.91 0.00 37.47 2.52
397 398 1.949465 AGAAAACACGCTCGGTTTCT 58.051 45.000 8.91 8.91 37.47 2.52
398 399 2.750301 AAGAAAACACGCTCGGTTTC 57.250 45.000 4.96 4.96 37.47 2.78
399 400 4.273969 TCATAAAGAAAACACGCTCGGTTT 59.726 37.500 0.00 0.00 39.99 3.27
400 401 3.810941 TCATAAAGAAAACACGCTCGGTT 59.189 39.130 0.00 0.00 0.00 4.44
401 402 3.395639 TCATAAAGAAAACACGCTCGGT 58.604 40.909 0.00 0.00 0.00 4.69
402 403 4.600012 ATCATAAAGAAAACACGCTCGG 57.400 40.909 0.00 0.00 0.00 4.63
403 404 6.566427 CGATTATCATAAAGAAAACACGCTCG 59.434 38.462 0.00 0.00 0.00 5.03
404 405 7.370836 CACGATTATCATAAAGAAAACACGCTC 59.629 37.037 0.00 0.00 0.00 5.03
405 406 7.180079 CACGATTATCATAAAGAAAACACGCT 58.820 34.615 0.00 0.00 0.00 5.07
406 407 6.076092 GCACGATTATCATAAAGAAAACACGC 60.076 38.462 0.00 0.00 0.00 5.34
407 408 7.180079 AGCACGATTATCATAAAGAAAACACG 58.820 34.615 0.00 0.00 0.00 4.49
408 409 9.982291 TTAGCACGATTATCATAAAGAAAACAC 57.018 29.630 0.00 0.00 0.00 3.32
422 423 9.896645 ATGGATATGAGATTTTAGCACGATTAT 57.103 29.630 0.00 0.00 0.00 1.28
424 425 7.879677 TCATGGATATGAGATTTTAGCACGATT 59.120 33.333 0.00 0.00 38.37 3.34
425 426 7.389232 TCATGGATATGAGATTTTAGCACGAT 58.611 34.615 0.00 0.00 38.37 3.73
427 428 7.548427 AGATCATGGATATGAGATTTTAGCACG 59.452 37.037 0.00 0.00 45.89 5.34
433 434 9.736414 AAATCGAGATCATGGATATGAGATTTT 57.264 29.630 0.00 0.00 45.89 1.82
436 437 8.143193 GCTAAATCGAGATCATGGATATGAGAT 58.857 37.037 0.00 0.00 45.89 2.75
437 438 7.123247 TGCTAAATCGAGATCATGGATATGAGA 59.877 37.037 0.00 0.00 45.89 3.27
438 439 7.263496 TGCTAAATCGAGATCATGGATATGAG 58.737 38.462 0.00 0.00 45.89 2.90
439 440 7.174107 TGCTAAATCGAGATCATGGATATGA 57.826 36.000 0.00 0.00 46.67 2.15
440 441 8.336080 CAATGCTAAATCGAGATCATGGATATG 58.664 37.037 0.00 0.00 35.57 1.78
444 445 4.999311 CCAATGCTAAATCGAGATCATGGA 59.001 41.667 0.00 0.00 0.00 3.41
445 446 4.999311 TCCAATGCTAAATCGAGATCATGG 59.001 41.667 0.00 0.00 0.00 3.66
447 448 4.694509 GCTCCAATGCTAAATCGAGATCAT 59.305 41.667 0.00 0.00 0.00 2.45
448 449 4.060900 GCTCCAATGCTAAATCGAGATCA 58.939 43.478 0.00 0.00 0.00 2.92
449 450 3.434984 GGCTCCAATGCTAAATCGAGATC 59.565 47.826 0.00 0.00 0.00 2.75
450 451 3.181451 TGGCTCCAATGCTAAATCGAGAT 60.181 43.478 0.00 0.00 0.00 2.75
451 452 2.170397 TGGCTCCAATGCTAAATCGAGA 59.830 45.455 0.00 0.00 0.00 4.04
453 454 2.708216 TGGCTCCAATGCTAAATCGA 57.292 45.000 0.00 0.00 0.00 3.59
454 455 3.438087 CCTATGGCTCCAATGCTAAATCG 59.562 47.826 0.00 0.00 0.00 3.34
455 456 4.655963 TCCTATGGCTCCAATGCTAAATC 58.344 43.478 0.00 0.00 0.00 2.17
456 457 4.729552 TCCTATGGCTCCAATGCTAAAT 57.270 40.909 0.00 0.00 0.00 1.40
457 458 4.207165 GTTCCTATGGCTCCAATGCTAAA 58.793 43.478 0.00 0.00 0.00 1.85
458 459 3.201930 TGTTCCTATGGCTCCAATGCTAA 59.798 43.478 0.00 0.00 0.00 3.09
460 461 1.565759 TGTTCCTATGGCTCCAATGCT 59.434 47.619 0.00 0.00 0.00 3.79
461 462 1.952296 CTGTTCCTATGGCTCCAATGC 59.048 52.381 0.00 0.00 0.00 3.56
465 466 1.951209 TCACTGTTCCTATGGCTCCA 58.049 50.000 0.00 0.00 0.00 3.86
466 467 3.010420 GTTTCACTGTTCCTATGGCTCC 58.990 50.000 0.00 0.00 0.00 4.70
468 469 2.038557 ACGTTTCACTGTTCCTATGGCT 59.961 45.455 0.00 0.00 0.00 4.75
469 470 2.159627 CACGTTTCACTGTTCCTATGGC 59.840 50.000 0.00 0.00 0.00 4.40
470 471 2.742053 CCACGTTTCACTGTTCCTATGG 59.258 50.000 0.00 0.00 0.00 2.74
471 472 2.742053 CCCACGTTTCACTGTTCCTATG 59.258 50.000 0.00 0.00 0.00 2.23
472 473 2.290071 CCCCACGTTTCACTGTTCCTAT 60.290 50.000 0.00 0.00 0.00 2.57
473 474 1.071071 CCCCACGTTTCACTGTTCCTA 59.929 52.381 0.00 0.00 0.00 2.94
474 475 0.179029 CCCCACGTTTCACTGTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
475 476 0.179040 TCCCCACGTTTCACTGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
476 477 1.804748 GATCCCCACGTTTCACTGTTC 59.195 52.381 0.00 0.00 0.00 3.18
477 478 1.544759 GGATCCCCACGTTTCACTGTT 60.545 52.381 0.00 0.00 0.00 3.16
478 479 0.036306 GGATCCCCACGTTTCACTGT 59.964 55.000 0.00 0.00 0.00 3.55
479 480 0.676782 GGGATCCCCACGTTTCACTG 60.677 60.000 21.42 0.00 44.65 3.66
491 492 4.512914 GTGCCTGCCTGGGATCCC 62.513 72.222 25.22 25.22 38.80 3.85
493 494 3.112205 ATCGTGCCTGCCTGGGATC 62.112 63.158 0.00 0.00 38.80 3.36
494 495 3.092511 ATCGTGCCTGCCTGGGAT 61.093 61.111 0.00 0.00 38.80 3.85
498 499 4.790962 AGCCATCGTGCCTGCCTG 62.791 66.667 0.00 0.00 0.00 4.85
499 500 4.790962 CAGCCATCGTGCCTGCCT 62.791 66.667 0.00 0.00 0.00 4.75
502 518 2.821366 GACCAGCCATCGTGCCTG 60.821 66.667 0.00 0.00 0.00 4.85
514 530 4.394712 GTGCCAGGACCGGACCAG 62.395 72.222 24.99 16.85 0.00 4.00
520 536 1.529226 TTGTTATTGTGCCAGGACCG 58.471 50.000 0.00 0.00 0.00 4.79
528 544 4.149747 CCCACGTTTCAATTGTTATTGTGC 59.850 41.667 5.13 0.00 41.54 4.57
530 546 4.585162 TCCCCACGTTTCAATTGTTATTGT 59.415 37.500 5.13 0.00 41.54 2.71
531 547 5.127693 TCCCCACGTTTCAATTGTTATTG 57.872 39.130 5.13 0.00 42.06 1.90
534 550 4.036971 CACTTCCCCACGTTTCAATTGTTA 59.963 41.667 5.13 0.00 0.00 2.41
538 554 2.661718 ACACTTCCCCACGTTTCAATT 58.338 42.857 0.00 0.00 0.00 2.32
539 555 2.358322 ACACTTCCCCACGTTTCAAT 57.642 45.000 0.00 0.00 0.00 2.57
540 556 2.131776 AACACTTCCCCACGTTTCAA 57.868 45.000 0.00 0.00 0.00 2.69
541 557 3.278668 TTAACACTTCCCCACGTTTCA 57.721 42.857 0.00 0.00 0.00 2.69
542 558 4.635833 TTTTAACACTTCCCCACGTTTC 57.364 40.909 0.00 0.00 0.00 2.78
564 580 7.988028 TCCTTCCCACGTTTCAATTTTTATTTT 59.012 29.630 0.00 0.00 0.00 1.82
566 582 7.056844 TCCTTCCCACGTTTCAATTTTTATT 57.943 32.000 0.00 0.00 0.00 1.40
567 583 6.658188 TCCTTCCCACGTTTCAATTTTTAT 57.342 33.333 0.00 0.00 0.00 1.40
568 584 6.466885 TTCCTTCCCACGTTTCAATTTTTA 57.533 33.333 0.00 0.00 0.00 1.52
569 585 5.346181 TTCCTTCCCACGTTTCAATTTTT 57.654 34.783 0.00 0.00 0.00 1.94
570 586 5.346181 TTTCCTTCCCACGTTTCAATTTT 57.654 34.783 0.00 0.00 0.00 1.82
571 587 5.545063 ATTTCCTTCCCACGTTTCAATTT 57.455 34.783 0.00 0.00 0.00 1.82
586 602 1.007118 AGGATGGGCCGAAATTTCCTT 59.993 47.619 12.54 0.00 43.43 3.36
588 604 1.032794 GAGGATGGGCCGAAATTTCC 58.967 55.000 12.54 0.00 43.43 3.13
618 634 3.056749 GGCCTCTCTTTAGTTCAGACGAA 60.057 47.826 0.00 0.00 0.00 3.85
630 646 1.968540 GCTGCGTTGGCCTCTCTTT 60.969 57.895 3.32 0.00 38.85 2.52
692 714 1.285641 GCAGCTGCGTTGCCTTTTA 59.714 52.632 25.23 0.00 33.76 1.52
713 735 0.250234 CCTCGGCTCTGATTGGTTGA 59.750 55.000 0.00 0.00 0.00 3.18
791 814 1.892819 CTGTGAGGCGTGGATGGTCT 61.893 60.000 0.00 0.00 0.00 3.85
792 815 1.448540 CTGTGAGGCGTGGATGGTC 60.449 63.158 0.00 0.00 0.00 4.02
807 830 1.000955 AGTTTCGAGCGTTGGATCTGT 59.999 47.619 0.00 0.00 0.00 3.41
853 876 3.967715 GGAACTTTCCGCGCTCTT 58.032 55.556 5.56 0.00 37.65 2.85
1443 2631 0.309302 CGCATCTCTACACCTCGAGG 59.691 60.000 30.11 30.11 42.17 4.63
1525 2716 4.223923 TGGTACCATCACATACATCACACA 59.776 41.667 11.60 0.00 0.00 3.72
1526 2717 4.765273 TGGTACCATCACATACATCACAC 58.235 43.478 11.60 0.00 0.00 3.82
1527 2718 5.628797 ATGGTACCATCACATACATCACA 57.371 39.130 22.23 0.00 29.42 3.58
1564 2760 5.755409 TCAGATTTGCTAACTTCCCACTA 57.245 39.130 0.00 0.00 0.00 2.74
1566 2762 5.904362 AATCAGATTTGCTAACTTCCCAC 57.096 39.130 0.00 0.00 0.00 4.61
1572 2769 9.143631 GCATGTTTAAAATCAGATTTGCTAACT 57.856 29.630 9.24 0.00 31.77 2.24
1573 2770 8.382875 GGCATGTTTAAAATCAGATTTGCTAAC 58.617 33.333 9.24 12.92 31.77 2.34
1575 2772 7.760794 CAGGCATGTTTAAAATCAGATTTGCTA 59.239 33.333 9.24 0.00 31.77 3.49
1576 2773 6.592607 CAGGCATGTTTAAAATCAGATTTGCT 59.407 34.615 9.24 0.00 31.77 3.91
1577 2774 6.673796 GCAGGCATGTTTAAAATCAGATTTGC 60.674 38.462 9.24 7.10 31.77 3.68
1578 2775 6.592607 AGCAGGCATGTTTAAAATCAGATTTG 59.407 34.615 9.24 0.00 31.77 2.32
1643 2871 5.068987 GCTGCCAAAACATTGAGGGATAATA 59.931 40.000 0.00 0.00 0.00 0.98
1719 2950 1.755959 TCACCTTGTTGTGCATTTGCT 59.244 42.857 3.94 0.00 42.66 3.91
1720 2951 2.129607 CTCACCTTGTTGTGCATTTGC 58.870 47.619 0.00 0.00 42.50 3.68
1721 2952 2.129607 GCTCACCTTGTTGTGCATTTG 58.870 47.619 0.00 0.00 36.28 2.32
1722 2953 1.755959 TGCTCACCTTGTTGTGCATTT 59.244 42.857 0.00 0.00 40.21 2.32
1723 2954 1.338973 CTGCTCACCTTGTTGTGCATT 59.661 47.619 0.00 0.00 43.16 3.56
1724 2955 0.956633 CTGCTCACCTTGTTGTGCAT 59.043 50.000 0.00 0.00 43.16 3.96
1725 2956 1.727511 GCTGCTCACCTTGTTGTGCA 61.728 55.000 0.00 0.51 42.22 4.57
1726 2957 1.008079 GCTGCTCACCTTGTTGTGC 60.008 57.895 0.00 0.00 36.17 4.57
1727 2958 0.309922 CTGCTGCTCACCTTGTTGTG 59.690 55.000 0.00 0.00 37.59 3.33
1728 2959 1.450531 GCTGCTGCTCACCTTGTTGT 61.451 55.000 8.53 0.00 36.03 3.32
1729 2960 1.285023 GCTGCTGCTCACCTTGTTG 59.715 57.895 8.53 0.00 36.03 3.33
1730 2961 1.152902 TGCTGCTGCTCACCTTGTT 60.153 52.632 17.00 0.00 40.48 2.83
1731 2962 1.600076 CTGCTGCTGCTCACCTTGT 60.600 57.895 17.00 0.00 40.48 3.16
1732 2963 2.333417 CCTGCTGCTGCTCACCTTG 61.333 63.158 17.00 0.00 40.48 3.61
1733 2964 2.033757 CCTGCTGCTGCTCACCTT 59.966 61.111 17.00 0.00 40.48 3.50
1734 2965 3.247648 ACCTGCTGCTGCTCACCT 61.248 61.111 17.00 0.00 40.48 4.00
1735 2966 3.054503 CACCTGCTGCTGCTCACC 61.055 66.667 17.00 0.00 40.48 4.02
1736 2967 2.281345 ACACCTGCTGCTGCTCAC 60.281 61.111 17.00 0.00 40.48 3.51
1737 2968 2.031616 GACACCTGCTGCTGCTCA 59.968 61.111 17.00 0.00 40.48 4.26
1738 2969 0.959372 AATGACACCTGCTGCTGCTC 60.959 55.000 17.00 6.02 40.48 4.26
1739 2970 0.959372 GAATGACACCTGCTGCTGCT 60.959 55.000 17.00 0.00 40.48 4.24
1740 2971 1.239296 TGAATGACACCTGCTGCTGC 61.239 55.000 8.89 8.89 40.20 5.25
1741 2972 0.803117 CTGAATGACACCTGCTGCTG 59.197 55.000 0.00 0.00 0.00 4.41
1742 2973 0.399454 ACTGAATGACACCTGCTGCT 59.601 50.000 0.00 0.00 0.00 4.24
1743 2974 1.198637 GAACTGAATGACACCTGCTGC 59.801 52.381 0.00 0.00 0.00 5.25
1744 2975 1.462283 CGAACTGAATGACACCTGCTG 59.538 52.381 0.00 0.00 0.00 4.41
1745 2976 1.344438 TCGAACTGAATGACACCTGCT 59.656 47.619 0.00 0.00 0.00 4.24
1746 2977 1.461127 GTCGAACTGAATGACACCTGC 59.539 52.381 0.00 0.00 32.91 4.85
1747 2978 2.069273 GGTCGAACTGAATGACACCTG 58.931 52.381 0.00 0.00 34.32 4.00
1748 2979 1.971357 AGGTCGAACTGAATGACACCT 59.029 47.619 0.00 0.00 34.32 4.00
1749 2980 2.069273 CAGGTCGAACTGAATGACACC 58.931 52.381 26.59 0.00 40.97 4.16
1750 2981 1.461127 GCAGGTCGAACTGAATGACAC 59.539 52.381 34.09 10.46 40.97 3.67
1751 2982 1.608025 GGCAGGTCGAACTGAATGACA 60.608 52.381 34.09 0.00 40.97 3.58
1752 2983 1.079503 GGCAGGTCGAACTGAATGAC 58.920 55.000 34.09 15.23 40.97 3.06
1753 2984 0.036388 GGGCAGGTCGAACTGAATGA 60.036 55.000 34.09 0.00 40.97 2.57
1754 2985 1.026718 GGGGCAGGTCGAACTGAATG 61.027 60.000 34.09 9.03 40.97 2.67
1755 2986 1.201429 AGGGGCAGGTCGAACTGAAT 61.201 55.000 34.09 12.64 40.97 2.57
1787 3021 4.613925 TGAGAGAGCAAGGGCATTATAG 57.386 45.455 0.00 0.00 44.61 1.31
1788 3022 5.573380 ATTGAGAGAGCAAGGGCATTATA 57.427 39.130 0.00 0.00 44.61 0.98
1833 3083 7.505585 TCCTTTCCACACAAAATTTGAGAGTAT 59.494 33.333 13.19 0.00 0.00 2.12
1843 3093 6.738453 GCACTATGTTCCTTTCCACACAAAAT 60.738 38.462 0.00 0.00 0.00 1.82
1845 3095 4.037446 GCACTATGTTCCTTTCCACACAAA 59.963 41.667 0.00 0.00 0.00 2.83
1868 3118 7.605691 AGTCAAAGAAGAGACAGTTATCCAATG 59.394 37.037 0.00 0.00 37.23 2.82
1892 3143 5.581605 CACTCAAAAGCACAACATTGTAGT 58.418 37.500 0.00 0.00 39.91 2.73
1913 3164 8.986477 AACTTAACATTCAAATAGATTGGCAC 57.014 30.769 0.00 0.00 39.62 5.01
2007 3263 0.611200 CTTCCACGGATACACACCCA 59.389 55.000 0.00 0.00 0.00 4.51
2008 3264 0.899720 TCTTCCACGGATACACACCC 59.100 55.000 0.00 0.00 0.00 4.61
2020 3302 4.096081 CAGCCAGAATTTCAGATCTTCCAC 59.904 45.833 0.00 0.00 0.00 4.02
2029 3314 5.471456 ACACTTAGAACAGCCAGAATTTCAG 59.529 40.000 0.00 0.00 0.00 3.02
2064 3352 8.774586 GTCAGTAAAGAAAACATCACATACTGT 58.225 33.333 0.00 0.00 39.36 3.55
2126 3420 5.426689 TCAACAGAGTGCAGATATTTCCT 57.573 39.130 0.00 0.00 0.00 3.36
2213 3507 5.991328 ACAAGACACAACTACACTGATTG 57.009 39.130 0.00 0.00 0.00 2.67
2373 3675 5.405935 TGAGAAAGTGATGCAGCTAACTA 57.594 39.130 2.53 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.