Multiple sequence alignment - TraesCS1B01G245100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G245100 chr1B 100.000 5289 0 0 1 5289 434412628 434417916 0.000000e+00 9768.0
1 TraesCS1B01G245100 chr1B 97.248 109 3 0 1 109 40432112 40432220 9.050000e-43 185.0
2 TraesCS1B01G245100 chr1B 97.222 108 3 0 2 109 40431201 40431094 3.250000e-42 183.0
3 TraesCS1B01G245100 chr1B 96.330 109 4 0 3 111 588423814 588423706 4.210000e-41 180.0
4 TraesCS1B01G245100 chr1B 93.966 116 7 0 1 116 434411747 434411632 5.440000e-40 176.0
5 TraesCS1B01G245100 chr1A 92.772 3763 175 42 707 4395 400965402 400969141 0.000000e+00 5352.0
6 TraesCS1B01G245100 chr1A 90.855 339 27 2 366 704 400965033 400965367 8.080000e-123 451.0
7 TraesCS1B01G245100 chr1A 89.051 274 21 5 110 382 400964362 400964627 1.100000e-86 331.0
8 TraesCS1B01G245100 chr1A 91.954 87 5 1 1741 1827 400966530 400966614 2.590000e-23 121.0
9 TraesCS1B01G245100 chr1D 91.512 1508 76 21 2039 3523 321673427 321674905 0.000000e+00 2028.0
10 TraesCS1B01G245100 chr1D 93.467 1301 58 16 745 2029 321671915 321673204 0.000000e+00 1906.0
11 TraesCS1B01G245100 chr1D 93.230 901 41 8 3506 4393 321675346 321676239 0.000000e+00 1308.0
12 TraesCS1B01G245100 chr1D 94.118 510 29 1 4778 5287 321677287 321677795 0.000000e+00 774.0
13 TraesCS1B01G245100 chr1D 84.663 489 52 18 110 575 321671179 321671667 2.880000e-127 466.0
14 TraesCS1B01G245100 chr1D 90.909 88 5 2 1741 1827 321673000 321673085 1.200000e-21 115.0
15 TraesCS1B01G245100 chr6B 93.574 498 26 5 2291 2785 20863637 20863143 0.000000e+00 737.0
16 TraesCS1B01G245100 chr6B 92.017 476 15 2 1031 1498 20864234 20863774 0.000000e+00 647.0
17 TraesCS1B01G245100 chr6B 95.455 88 4 0 1610 1697 20863721 20863634 1.990000e-29 141.0
18 TraesCS1B01G245100 chr6B 90.164 61 4 1 1532 1592 20863778 20863720 1.580000e-10 78.7
19 TraesCS1B01G245100 chr2B 92.771 498 24 8 2291 2785 9710996 9711484 0.000000e+00 710.0
20 TraesCS1B01G245100 chr2B 91.646 395 11 4 1082 1468 9710443 9710823 1.300000e-145 527.0
21 TraesCS1B01G245100 chr2B 98.182 110 2 0 1 110 174795464 174795355 5.410000e-45 193.0
22 TraesCS1B01G245100 chr2B 98.165 109 2 0 1 109 174796372 174796480 1.940000e-44 191.0
23 TraesCS1B01G245100 chr2B 84.653 202 8 2 1496 1697 9710821 9710999 4.210000e-41 180.0
24 TraesCS1B01G245100 chr2B 83.065 124 11 2 4619 4733 662916434 662916312 2.610000e-18 104.0
25 TraesCS1B01G245100 chr4B 99.091 110 1 0 1 110 636037474 636037365 1.160000e-46 198.0
26 TraesCS1B01G245100 chr4B 94.495 109 6 0 1 109 110228510 110228618 9.110000e-38 169.0
27 TraesCS1B01G245100 chr7B 98.165 109 2 0 1 109 462492266 462492158 1.940000e-44 191.0
28 TraesCS1B01G245100 chr5D 85.185 135 8 4 4611 4735 382495069 382495201 1.550000e-25 128.0
29 TraesCS1B01G245100 chr7D 85.827 127 8 4 4618 4735 577750716 577750841 5.560000e-25 126.0
30 TraesCS1B01G245100 chr3A 83.704 135 12 2 4610 4735 654592106 654591973 9.300000e-23 119.0
31 TraesCS1B01G245100 chr3A 90.000 70 7 0 4656 4725 114239717 114239648 2.030000e-14 91.6
32 TraesCS1B01G245100 chr7A 84.800 125 9 4 4620 4735 454548891 454549014 3.350000e-22 117.0
33 TraesCS1B01G245100 chr2A 84.375 128 9 7 4617 4735 514859200 514859075 1.200000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G245100 chr1B 434412628 434417916 5288 False 9768.000000 9768 100.0000 1 5289 1 chr1B.!!$F2 5288
1 TraesCS1B01G245100 chr1A 400964362 400969141 4779 False 1563.750000 5352 91.1580 110 4395 4 chr1A.!!$F1 4285
2 TraesCS1B01G245100 chr1D 321671179 321677795 6616 False 1099.500000 2028 91.3165 110 5287 6 chr1D.!!$F1 5177
3 TraesCS1B01G245100 chr6B 20863143 20864234 1091 True 400.925000 737 92.8025 1031 2785 4 chr6B.!!$R1 1754
4 TraesCS1B01G245100 chr2B 9710443 9711484 1041 False 472.333333 710 89.6900 1082 2785 3 chr2B.!!$F2 1703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 345 0.323629 ATCCAACCGACGAATGTGGT 59.676 50.000 0.00 0.00 37.68 4.16 F
1386 1916 0.248825 GCAGTGATCTCGAGTGCGAT 60.249 55.000 13.13 0.00 46.80 4.58 F
1862 2402 1.135333 GGTTCGCTGGTTTGTTTGGAA 59.865 47.619 0.00 0.00 0.00 3.53 F
2344 3099 1.417517 TCTGAAGTTCAGGAAGCAGCA 59.582 47.619 28.33 7.66 44.39 4.41 F
2945 3713 2.753452 CTCAAAGCATGCCTCATCTTGT 59.247 45.455 15.66 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1399 1929 0.035056 CCAAGTCGAGGCAAAGGGAT 60.035 55.00 0.00 0.0 0.00 3.85 R
3225 3994 0.312102 GGCCTTGTCTTTCACAGCAC 59.688 55.00 0.00 0.0 35.97 4.40 R
3278 4047 5.990120 ATATTTGCTTGGGCTTGGATATC 57.010 39.13 0.00 0.0 39.59 1.63 R
4036 5286 1.391157 AACATGGCCTGCAAACACGT 61.391 50.00 3.32 0.0 0.00 4.49 R
4656 6759 0.095935 CGATTTGAACAGCAGCTCCG 59.904 55.00 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.747852 TTTTTGAAACAGCCGACCCC 59.252 50.000 0.00 0.00 0.00 4.95
22 23 1.448922 TTTTGAAACAGCCGACCCCG 61.449 55.000 0.00 0.00 0.00 5.73
32 33 2.890371 CGACCCCGGACTTGGTAG 59.110 66.667 0.73 0.00 34.20 3.18
33 34 1.980772 CGACCCCGGACTTGGTAGT 60.981 63.158 0.73 0.00 34.20 2.73
34 35 1.538687 CGACCCCGGACTTGGTAGTT 61.539 60.000 0.73 0.00 34.20 2.24
35 36 1.560505 GACCCCGGACTTGGTAGTTA 58.439 55.000 0.73 0.00 34.20 2.24
36 37 2.113807 GACCCCGGACTTGGTAGTTAT 58.886 52.381 0.73 0.00 34.20 1.89
37 38 2.102084 GACCCCGGACTTGGTAGTTATC 59.898 54.545 0.73 0.00 34.20 1.75
38 39 2.112998 CCCCGGACTTGGTAGTTATCA 58.887 52.381 0.73 0.00 33.84 2.15
39 40 2.102588 CCCCGGACTTGGTAGTTATCAG 59.897 54.545 0.73 0.00 33.84 2.90
40 41 2.483188 CCCGGACTTGGTAGTTATCAGC 60.483 54.545 0.73 0.00 33.84 4.26
41 42 2.460918 CGGACTTGGTAGTTATCAGCG 58.539 52.381 0.00 0.00 33.84 5.18
42 43 2.098607 CGGACTTGGTAGTTATCAGCGA 59.901 50.000 0.00 0.00 33.84 4.93
43 44 3.428452 CGGACTTGGTAGTTATCAGCGAA 60.428 47.826 0.00 0.00 33.84 4.70
44 45 4.501071 GGACTTGGTAGTTATCAGCGAAA 58.499 43.478 0.00 0.00 33.84 3.46
45 46 4.933400 GGACTTGGTAGTTATCAGCGAAAA 59.067 41.667 0.00 0.00 33.84 2.29
46 47 5.410439 GGACTTGGTAGTTATCAGCGAAAAA 59.590 40.000 0.00 0.00 33.84 1.94
47 48 6.093633 GGACTTGGTAGTTATCAGCGAAAAAT 59.906 38.462 0.00 0.00 33.84 1.82
48 49 7.361799 GGACTTGGTAGTTATCAGCGAAAAATT 60.362 37.037 0.00 0.00 33.84 1.82
49 50 8.556213 ACTTGGTAGTTATCAGCGAAAAATTA 57.444 30.769 0.00 0.00 0.00 1.40
50 51 9.005777 ACTTGGTAGTTATCAGCGAAAAATTAA 57.994 29.630 0.00 0.00 0.00 1.40
51 52 9.834628 CTTGGTAGTTATCAGCGAAAAATTAAA 57.165 29.630 0.00 0.00 0.00 1.52
57 58 9.072294 AGTTATCAGCGAAAAATTAAAATTCGG 57.928 29.630 17.00 6.65 44.42 4.30
65 66 9.852481 GCGAAAAATTAAAATTCGGTAGTTTTT 57.148 25.926 17.00 5.92 44.42 1.94
82 83 3.309600 TTTTTGGAACCCTAACCCGAA 57.690 42.857 0.00 0.00 0.00 4.30
83 84 3.529216 TTTTGGAACCCTAACCCGAAT 57.471 42.857 0.00 0.00 0.00 3.34
84 85 3.529216 TTTGGAACCCTAACCCGAATT 57.471 42.857 0.00 0.00 0.00 2.17
85 86 2.500392 TGGAACCCTAACCCGAATTG 57.500 50.000 0.00 0.00 0.00 2.32
86 87 1.706305 TGGAACCCTAACCCGAATTGT 59.294 47.619 0.00 0.00 0.00 2.71
87 88 2.911636 TGGAACCCTAACCCGAATTGTA 59.088 45.455 0.00 0.00 0.00 2.41
88 89 3.054948 TGGAACCCTAACCCGAATTGTAG 60.055 47.826 0.00 0.00 0.00 2.74
89 90 3.054875 GGAACCCTAACCCGAATTGTAGT 60.055 47.826 0.00 0.00 0.00 2.73
90 91 4.162131 GGAACCCTAACCCGAATTGTAGTA 59.838 45.833 0.00 0.00 0.00 1.82
91 92 5.349061 AACCCTAACCCGAATTGTAGTAG 57.651 43.478 0.00 0.00 0.00 2.57
92 93 4.356436 ACCCTAACCCGAATTGTAGTAGT 58.644 43.478 0.00 0.00 0.00 2.73
93 94 4.779489 ACCCTAACCCGAATTGTAGTAGTT 59.221 41.667 0.00 0.00 0.00 2.24
94 95 5.249163 ACCCTAACCCGAATTGTAGTAGTTT 59.751 40.000 0.00 0.00 0.00 2.66
95 96 6.175471 CCCTAACCCGAATTGTAGTAGTTTT 58.825 40.000 0.00 0.00 0.00 2.43
96 97 7.038373 ACCCTAACCCGAATTGTAGTAGTTTTA 60.038 37.037 0.00 0.00 0.00 1.52
97 98 7.989170 CCCTAACCCGAATTGTAGTAGTTTTAT 59.011 37.037 0.00 0.00 0.00 1.40
98 99 8.823818 CCTAACCCGAATTGTAGTAGTTTTATG 58.176 37.037 0.00 0.00 0.00 1.90
99 100 6.673154 ACCCGAATTGTAGTAGTTTTATGC 57.327 37.500 0.00 0.00 0.00 3.14
100 101 6.412214 ACCCGAATTGTAGTAGTTTTATGCT 58.588 36.000 0.00 0.00 0.00 3.79
101 102 7.558604 ACCCGAATTGTAGTAGTTTTATGCTA 58.441 34.615 0.00 0.00 0.00 3.49
102 103 8.208903 ACCCGAATTGTAGTAGTTTTATGCTAT 58.791 33.333 0.00 0.00 0.00 2.97
103 104 9.052759 CCCGAATTGTAGTAGTTTTATGCTATT 57.947 33.333 0.00 0.00 0.00 1.73
158 160 7.177568 TGCCTGCAGTCCTTTGTTTATATTTTA 59.822 33.333 13.81 0.00 0.00 1.52
196 198 4.599041 TGGTCAAGTTATAGCCTGCAATT 58.401 39.130 0.00 0.00 0.00 2.32
207 209 8.836413 GTTATAGCCTGCAATTTTGTGTATCTA 58.164 33.333 0.00 0.00 0.00 1.98
335 345 0.323629 ATCCAACCGACGAATGTGGT 59.676 50.000 0.00 0.00 37.68 4.16
531 966 4.597507 TGACTAAATTGTCAGTCCCTTCCT 59.402 41.667 10.83 0.00 41.43 3.36
607 1075 9.334947 TCAGATTCAGATTCCTATGAAATGTTC 57.665 33.333 0.00 0.00 38.80 3.18
620 1088 8.454106 CCTATGAAATGTTCTCTTACCTGTTTG 58.546 37.037 0.00 0.00 0.00 2.93
632 1100 1.064758 ACCTGTTTGCTCTTGGTGACA 60.065 47.619 0.00 0.00 39.83 3.58
637 1105 2.813754 GTTTGCTCTTGGTGACATGCTA 59.186 45.455 0.00 0.00 42.32 3.49
645 1113 5.359756 TCTTGGTGACATGCTATGTGATAC 58.640 41.667 6.52 4.01 45.03 2.24
647 1115 4.948847 TGGTGACATGCTATGTGATACTC 58.051 43.478 6.52 0.00 45.03 2.59
704 1172 6.872547 TCATCAAGACATCTATATCTGCAAGC 59.127 38.462 0.00 0.00 0.00 4.01
705 1173 5.545588 TCAAGACATCTATATCTGCAAGCC 58.454 41.667 0.00 0.00 0.00 4.35
719 1229 1.268896 GCAAGCCATGATGGACATTCG 60.269 52.381 17.22 0.00 40.96 3.34
726 1236 1.866015 TGATGGACATTCGGAGACCT 58.134 50.000 0.00 0.00 34.32 3.85
728 1238 2.035632 GATGGACATTCGGAGACCTCT 58.964 52.381 0.00 0.00 34.32 3.69
837 1357 6.237490 CGCTTTCTTGAAGGTAACACGTATAG 60.237 42.308 0.00 0.00 41.41 1.31
838 1358 6.455246 GCTTTCTTGAAGGTAACACGTATAGC 60.455 42.308 0.00 0.00 41.41 2.97
841 1361 4.787260 TGAAGGTAACACGTATAGCACA 57.213 40.909 11.02 8.24 41.41 4.57
842 1362 4.487948 TGAAGGTAACACGTATAGCACAC 58.512 43.478 11.02 4.32 41.41 3.82
884 1406 3.369400 CACCCCGCCGATGCAAAA 61.369 61.111 0.00 0.00 37.32 2.44
909 1431 1.156736 CAAGTGAGTTAACGGGCCTG 58.843 55.000 11.02 11.02 0.00 4.85
1010 1537 1.201424 AAACCCTAGCTAACCCCTCG 58.799 55.000 0.00 0.00 0.00 4.63
1386 1916 0.248825 GCAGTGATCTCGAGTGCGAT 60.249 55.000 13.13 0.00 46.80 4.58
1399 1929 1.609210 TGCGATGGTCAGTCTCCCA 60.609 57.895 0.00 0.00 34.66 4.37
1406 1936 1.290134 GGTCAGTCTCCCATCCCTTT 58.710 55.000 0.00 0.00 0.00 3.11
1454 1992 6.996509 AGCTGGTGAATTCATGTTTTATGTT 58.003 32.000 12.12 0.00 0.00 2.71
1465 2003 8.781067 TTCATGTTTTATGTTCAGTTTCTTCG 57.219 30.769 0.00 0.00 0.00 3.79
1630 2170 6.968263 TCTGTTGTTCATTTATGTTTGGGA 57.032 33.333 0.00 0.00 0.00 4.37
1723 2263 6.475076 GCAATGAAATGAACAGTGTGTAAACA 59.525 34.615 0.00 0.00 36.06 2.83
1724 2264 7.515059 GCAATGAAATGAACAGTGTGTAAACAC 60.515 37.037 8.22 8.22 46.59 3.32
1856 2396 1.944709 GTTGTAGGTTCGCTGGTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
1862 2402 1.135333 GGTTCGCTGGTTTGTTTGGAA 59.865 47.619 0.00 0.00 0.00 3.53
1872 2412 5.551233 TGGTTTGTTTGGAAATGTTTGTGA 58.449 33.333 0.00 0.00 0.00 3.58
1881 2421 8.829612 GTTTGGAAATGTTTGTGATCAATCTTT 58.170 29.630 0.00 0.00 33.32 2.52
1999 2540 5.024118 AGCAGTAAAGGTCATGGTAGTAGT 58.976 41.667 0.00 0.00 0.00 2.73
2046 2613 9.249457 AGTTCACATATATTATCACTCGTGTTG 57.751 33.333 0.00 0.00 0.00 3.33
2047 2614 9.031360 GTTCACATATATTATCACTCGTGTTGT 57.969 33.333 0.00 0.00 0.00 3.32
2048 2615 9.594478 TTCACATATATTATCACTCGTGTTGTT 57.406 29.630 0.00 0.00 0.00 2.83
2049 2616 9.030301 TCACATATATTATCACTCGTGTTGTTG 57.970 33.333 0.00 0.00 0.00 3.33
2050 2617 8.817100 CACATATATTATCACTCGTGTTGTTGT 58.183 33.333 0.00 0.00 0.00 3.32
2090 2845 9.764363 CTATGGTTAGCATACTGTCTATCAAAA 57.236 33.333 0.00 0.00 0.00 2.44
2176 2931 3.710209 ACTGCTTTCAACAGCTCCTAT 57.290 42.857 0.00 0.00 40.79 2.57
2185 2940 7.615582 TTTCAACAGCTCCTATATTTGAGTG 57.384 36.000 0.00 3.98 0.00 3.51
2193 2948 7.335422 CAGCTCCTATATTTGAGTGTCTGTTTT 59.665 37.037 0.00 0.00 0.00 2.43
2247 3002 4.829064 TGCTTAAGTGTTGGTGTCATTC 57.171 40.909 4.02 0.00 0.00 2.67
2327 3082 3.004629 TGGCAATACAAACACTGCTTCTG 59.995 43.478 0.00 0.00 35.13 3.02
2344 3099 1.417517 TCTGAAGTTCAGGAAGCAGCA 59.582 47.619 28.33 7.66 44.39 4.41
2393 3148 7.159372 GGTTTCTGATTCAACTTAGTACTGGA 58.841 38.462 5.39 0.00 0.00 3.86
2552 3310 6.032094 CACATGAAGATGGCTGAACAATTAC 58.968 40.000 0.00 0.00 33.39 1.89
2605 3363 6.743575 TTGAATTCTAGCCTGTTCTAAAGC 57.256 37.500 7.05 0.00 0.00 3.51
2646 3404 7.278875 AGTTTCAAAAGATACATTTTTGGGCA 58.721 30.769 9.70 0.00 42.75 5.36
2791 3558 5.767277 AGGCCCATTTTTGAATTTCAGAT 57.233 34.783 0.00 0.00 0.00 2.90
2792 3559 6.872585 AGGCCCATTTTTGAATTTCAGATA 57.127 33.333 0.00 0.00 0.00 1.98
2845 3613 7.964604 AGTCCTAGTTAGTTAACTGCAAAAG 57.035 36.000 18.56 8.68 45.44 2.27
2902 3670 4.559862 ACTACTGTTTCCTCATCTTGGG 57.440 45.455 0.00 0.00 0.00 4.12
2916 3684 6.070951 TCATCTTGGGTTTCTCATCTCATT 57.929 37.500 0.00 0.00 0.00 2.57
2920 3688 5.249163 TCTTGGGTTTCTCATCTCATTCTCA 59.751 40.000 0.00 0.00 0.00 3.27
2921 3689 5.503634 TGGGTTTCTCATCTCATTCTCAA 57.496 39.130 0.00 0.00 0.00 3.02
2936 3704 4.970662 TTCTCAATACTCAAAGCATGCC 57.029 40.909 15.66 0.00 0.00 4.40
2945 3713 2.753452 CTCAAAGCATGCCTCATCTTGT 59.247 45.455 15.66 0.00 0.00 3.16
3186 3955 8.410141 TGTTCCAAAACCACAGAATACTAAAAG 58.590 33.333 0.00 0.00 34.28 2.27
3278 4047 5.710513 TTTCCTGATGAGATGGTTTGTTG 57.289 39.130 0.00 0.00 0.00 3.33
3291 4060 3.096092 GGTTTGTTGATATCCAAGCCCA 58.904 45.455 13.27 0.00 36.33 5.36
3371 4140 6.570692 CATGCTCTTTGAAGGCTATGAAATT 58.429 36.000 0.00 0.00 0.00 1.82
3456 4230 5.316167 TCTGCGGCCAATATCAAAAGATAT 58.684 37.500 2.24 0.00 0.00 1.63
3592 4829 4.040217 TGGCATAGCAGGACATTTTGTTTT 59.960 37.500 0.00 0.00 0.00 2.43
3593 4830 4.389687 GGCATAGCAGGACATTTTGTTTTG 59.610 41.667 0.00 0.00 0.00 2.44
3594 4831 4.143052 GCATAGCAGGACATTTTGTTTTGC 60.143 41.667 8.40 8.40 39.03 3.68
3667 4905 9.764363 TGAATTTCTTAGTGGCATAGTATAGTG 57.236 33.333 0.00 0.00 0.00 2.74
3820 5059 5.352284 ACTTGTGTACGATCTCATGGAATC 58.648 41.667 0.00 0.00 0.00 2.52
3829 5068 9.482627 GTACGATCTCATGGAATCTTTTCTATT 57.517 33.333 0.00 0.00 31.30 1.73
3947 5186 6.467677 TGGCAGATTAATAGAGAAGTATGGC 58.532 40.000 0.00 0.00 0.00 4.40
4017 5256 9.687210 TCGAGCGTATGTTTAACAAATATCTAT 57.313 29.630 0.66 0.00 0.00 1.98
4159 5409 4.043561 AGACCATCCTCTATCCGATGTAGT 59.956 45.833 0.00 0.00 35.17 2.73
4330 5580 6.265196 TCACTTTAATTGTTCTGGCACTTCAT 59.735 34.615 0.00 0.00 0.00 2.57
4331 5581 6.583806 CACTTTAATTGTTCTGGCACTTCATC 59.416 38.462 0.00 0.00 0.00 2.92
4333 5583 4.778534 AATTGTTCTGGCACTTCATCAG 57.221 40.909 0.00 0.00 0.00 2.90
4437 5715 6.570672 ATGTAATGCTGCAATCATAGAAGG 57.429 37.500 6.36 0.00 0.00 3.46
4438 5716 4.276678 TGTAATGCTGCAATCATAGAAGGC 59.723 41.667 6.36 0.00 0.00 4.35
4439 5717 2.723322 TGCTGCAATCATAGAAGGCT 57.277 45.000 0.00 0.00 0.00 4.58
4440 5718 2.294979 TGCTGCAATCATAGAAGGCTG 58.705 47.619 0.00 0.00 0.00 4.85
4441 5719 2.092807 TGCTGCAATCATAGAAGGCTGA 60.093 45.455 0.00 0.00 0.00 4.26
4442 5720 2.947652 GCTGCAATCATAGAAGGCTGAA 59.052 45.455 0.00 0.00 0.00 3.02
4443 5721 3.243002 GCTGCAATCATAGAAGGCTGAAC 60.243 47.826 0.00 0.00 0.00 3.18
4444 5722 4.197750 CTGCAATCATAGAAGGCTGAACT 58.802 43.478 0.00 0.00 0.00 3.01
4445 5723 4.592942 TGCAATCATAGAAGGCTGAACTT 58.407 39.130 0.00 0.00 0.00 2.66
4446 5724 5.012239 TGCAATCATAGAAGGCTGAACTTT 58.988 37.500 0.00 0.00 0.00 2.66
4447 5725 6.179756 TGCAATCATAGAAGGCTGAACTTTA 58.820 36.000 0.00 0.00 0.00 1.85
4448 5726 6.317140 TGCAATCATAGAAGGCTGAACTTTAG 59.683 38.462 0.00 0.00 0.00 1.85
4449 5727 6.723282 CAATCATAGAAGGCTGAACTTTAGC 58.277 40.000 0.00 0.00 40.41 3.09
4450 5728 5.420725 TCATAGAAGGCTGAACTTTAGCA 57.579 39.130 7.76 0.00 42.88 3.49
4451 5729 5.994250 TCATAGAAGGCTGAACTTTAGCAT 58.006 37.500 7.76 0.00 42.88 3.79
4452 5730 6.051717 TCATAGAAGGCTGAACTTTAGCATC 58.948 40.000 7.76 5.46 42.88 3.91
4453 5731 4.292186 AGAAGGCTGAACTTTAGCATCA 57.708 40.909 7.76 0.00 42.88 3.07
4454 5732 4.853007 AGAAGGCTGAACTTTAGCATCAT 58.147 39.130 7.76 0.00 42.88 2.45
4455 5733 5.259632 AGAAGGCTGAACTTTAGCATCATT 58.740 37.500 7.76 0.00 42.88 2.57
4456 5734 6.418101 AGAAGGCTGAACTTTAGCATCATTA 58.582 36.000 7.76 0.00 42.88 1.90
4457 5735 6.886459 AGAAGGCTGAACTTTAGCATCATTAA 59.114 34.615 7.76 0.00 42.88 1.40
4458 5736 7.559170 AGAAGGCTGAACTTTAGCATCATTAAT 59.441 33.333 7.76 0.00 42.88 1.40
4459 5737 7.651027 AGGCTGAACTTTAGCATCATTAATT 57.349 32.000 7.76 0.00 42.88 1.40
4491 5769 8.352201 CCAAGAAATTTCGGAGCAAATCATATA 58.648 33.333 12.42 0.00 0.00 0.86
4544 6647 1.542492 CATGAGCAACTCCTGGCTTT 58.458 50.000 0.00 0.00 41.22 3.51
4545 6648 2.715046 CATGAGCAACTCCTGGCTTTA 58.285 47.619 0.00 0.00 41.22 1.85
4578 6681 1.593265 CCCAAACCAGGCATCAAGC 59.407 57.895 0.00 0.00 44.65 4.01
4618 6721 9.936108 CAACATACAAAAAGCAAAATACATACG 57.064 29.630 0.00 0.00 0.00 3.06
4619 6722 8.168681 ACATACAAAAAGCAAAATACATACGC 57.831 30.769 0.00 0.00 0.00 4.42
4620 6723 7.274686 ACATACAAAAAGCAAAATACATACGCC 59.725 33.333 0.00 0.00 0.00 5.68
4621 6724 4.926832 ACAAAAAGCAAAATACATACGCCC 59.073 37.500 0.00 0.00 0.00 6.13
4622 6725 5.167845 CAAAAAGCAAAATACATACGCCCT 58.832 37.500 0.00 0.00 0.00 5.19
4623 6726 4.370364 AAAGCAAAATACATACGCCCTG 57.630 40.909 0.00 0.00 0.00 4.45
4624 6727 2.999331 AGCAAAATACATACGCCCTGT 58.001 42.857 0.00 0.00 0.00 4.00
4625 6728 3.352648 AGCAAAATACATACGCCCTGTT 58.647 40.909 0.00 0.00 0.00 3.16
4626 6729 3.377172 AGCAAAATACATACGCCCTGTTC 59.623 43.478 0.00 0.00 0.00 3.18
4627 6730 3.787476 GCAAAATACATACGCCCTGTTCG 60.787 47.826 0.00 0.00 0.00 3.95
4628 6731 3.530265 AAATACATACGCCCTGTTCGA 57.470 42.857 0.00 0.00 0.00 3.71
4629 6732 3.746045 AATACATACGCCCTGTTCGAT 57.254 42.857 0.00 0.00 0.00 3.59
4630 6733 4.859304 AATACATACGCCCTGTTCGATA 57.141 40.909 0.00 0.00 0.00 2.92
4631 6734 2.503920 ACATACGCCCTGTTCGATAC 57.496 50.000 0.00 0.00 0.00 2.24
4632 6735 1.068127 ACATACGCCCTGTTCGATACC 59.932 52.381 0.00 0.00 0.00 2.73
4633 6736 0.677842 ATACGCCCTGTTCGATACCC 59.322 55.000 0.00 0.00 0.00 3.69
4634 6737 1.394266 TACGCCCTGTTCGATACCCC 61.394 60.000 0.00 0.00 0.00 4.95
4635 6738 2.432300 CGCCCTGTTCGATACCCCT 61.432 63.158 0.00 0.00 0.00 4.79
4636 6739 1.446366 GCCCTGTTCGATACCCCTC 59.554 63.158 0.00 0.00 0.00 4.30
4637 6740 1.049289 GCCCTGTTCGATACCCCTCT 61.049 60.000 0.00 0.00 0.00 3.69
4638 6741 1.756690 GCCCTGTTCGATACCCCTCTA 60.757 57.143 0.00 0.00 0.00 2.43
4639 6742 1.962100 CCCTGTTCGATACCCCTCTAC 59.038 57.143 0.00 0.00 0.00 2.59
4640 6743 2.424523 CCCTGTTCGATACCCCTCTACT 60.425 54.545 0.00 0.00 0.00 2.57
4641 6744 2.885894 CCTGTTCGATACCCCTCTACTC 59.114 54.545 0.00 0.00 0.00 2.59
4642 6745 2.885894 CTGTTCGATACCCCTCTACTCC 59.114 54.545 0.00 0.00 0.00 3.85
4643 6746 2.242965 TGTTCGATACCCCTCTACTCCA 59.757 50.000 0.00 0.00 0.00 3.86
4644 6747 2.622470 GTTCGATACCCCTCTACTCCAC 59.378 54.545 0.00 0.00 0.00 4.02
4645 6748 1.848388 TCGATACCCCTCTACTCCACA 59.152 52.381 0.00 0.00 0.00 4.17
4646 6749 2.242965 TCGATACCCCTCTACTCCACAA 59.757 50.000 0.00 0.00 0.00 3.33
4647 6750 2.361438 CGATACCCCTCTACTCCACAAC 59.639 54.545 0.00 0.00 0.00 3.32
4648 6751 3.644335 GATACCCCTCTACTCCACAACT 58.356 50.000 0.00 0.00 0.00 3.16
4649 6752 1.939980 ACCCCTCTACTCCACAACTC 58.060 55.000 0.00 0.00 0.00 3.01
4650 6753 1.196012 CCCCTCTACTCCACAACTCC 58.804 60.000 0.00 0.00 0.00 3.85
4651 6754 0.818296 CCCTCTACTCCACAACTCCG 59.182 60.000 0.00 0.00 0.00 4.63
4652 6755 0.818296 CCTCTACTCCACAACTCCGG 59.182 60.000 0.00 0.00 0.00 5.14
4653 6756 0.818296 CTCTACTCCACAACTCCGGG 59.182 60.000 0.00 0.00 0.00 5.73
4654 6757 0.406750 TCTACTCCACAACTCCGGGA 59.593 55.000 0.00 0.00 0.00 5.14
4656 6759 2.266055 CTCCACAACTCCGGGAGC 59.734 66.667 23.84 0.00 41.53 4.70
4657 6760 3.649277 CTCCACAACTCCGGGAGCG 62.649 68.421 23.84 17.06 41.53 5.03
4658 6761 4.760047 CCACAACTCCGGGAGCGG 62.760 72.222 23.84 17.56 32.04 5.52
4659 6762 3.691342 CACAACTCCGGGAGCGGA 61.691 66.667 23.84 4.03 36.51 5.54
4674 6777 3.984292 CGGAGCTGCTGTTCAAATC 57.016 52.632 7.01 0.00 0.00 2.17
4675 6778 0.095935 CGGAGCTGCTGTTCAAATCG 59.904 55.000 7.01 0.43 0.00 3.34
4676 6779 1.442769 GGAGCTGCTGTTCAAATCGA 58.557 50.000 7.01 0.00 0.00 3.59
4677 6780 1.806542 GGAGCTGCTGTTCAAATCGAA 59.193 47.619 7.01 0.00 0.00 3.71
4678 6781 2.159599 GGAGCTGCTGTTCAAATCGAAG 60.160 50.000 7.01 0.00 33.09 3.79
4679 6782 1.808945 AGCTGCTGTTCAAATCGAAGG 59.191 47.619 0.00 0.00 33.09 3.46
4680 6783 1.806542 GCTGCTGTTCAAATCGAAGGA 59.193 47.619 0.00 0.00 33.09 3.36
4681 6784 2.159599 GCTGCTGTTCAAATCGAAGGAG 60.160 50.000 0.00 0.00 33.09 3.69
4682 6785 3.070018 CTGCTGTTCAAATCGAAGGAGT 58.930 45.455 0.00 0.00 33.09 3.85
4683 6786 3.476552 TGCTGTTCAAATCGAAGGAGTT 58.523 40.909 0.00 0.00 33.09 3.01
4684 6787 3.250762 TGCTGTTCAAATCGAAGGAGTTG 59.749 43.478 0.00 0.00 46.65 3.16
4685 6788 3.251004 GCTGTTCAAATCGAAGGAGTTGT 59.749 43.478 4.50 0.00 45.74 3.32
4686 6789 4.776743 CTGTTCAAATCGAAGGAGTTGTG 58.223 43.478 4.50 0.00 45.74 3.33
4687 6790 3.563808 TGTTCAAATCGAAGGAGTTGTGG 59.436 43.478 4.50 0.00 45.74 4.17
4688 6791 3.485463 TCAAATCGAAGGAGTTGTGGT 57.515 42.857 4.50 0.00 45.74 4.16
4689 6792 3.815809 TCAAATCGAAGGAGTTGTGGTT 58.184 40.909 4.50 0.00 45.74 3.67
4690 6793 4.204012 TCAAATCGAAGGAGTTGTGGTTT 58.796 39.130 4.50 0.00 45.74 3.27
4691 6794 4.274950 TCAAATCGAAGGAGTTGTGGTTTC 59.725 41.667 4.50 0.00 45.74 2.78
4692 6795 2.249844 TCGAAGGAGTTGTGGTTTCC 57.750 50.000 0.00 0.00 0.00 3.13
4693 6796 1.202722 TCGAAGGAGTTGTGGTTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
4694 6797 1.617322 GAAGGAGTTGTGGTTTCCCC 58.383 55.000 0.00 0.00 0.00 4.81
4695 6798 0.179001 AAGGAGTTGTGGTTTCCCCG 60.179 55.000 0.00 0.00 35.15 5.73
4696 6799 2.265904 GGAGTTGTGGTTTCCCCGC 61.266 63.158 0.00 0.00 44.53 6.13
4697 6800 1.228154 GAGTTGTGGTTTCCCCGCT 60.228 57.895 0.00 0.00 44.58 5.52
4698 6801 1.228154 AGTTGTGGTTTCCCCGCTC 60.228 57.895 0.00 0.00 44.58 5.03
4699 6802 2.114411 TTGTGGTTTCCCCGCTCC 59.886 61.111 0.00 0.00 44.58 4.70
4700 6803 3.835790 TTGTGGTTTCCCCGCTCCG 62.836 63.158 0.00 0.00 44.58 4.63
4704 6807 4.388499 GTTTCCCCGCTCCGCAGA 62.388 66.667 0.00 0.00 0.00 4.26
4705 6808 3.399181 TTTCCCCGCTCCGCAGAT 61.399 61.111 0.00 0.00 0.00 2.90
4706 6809 2.966732 TTTCCCCGCTCCGCAGATT 61.967 57.895 0.00 0.00 0.00 2.40
4707 6810 2.869503 TTTCCCCGCTCCGCAGATTC 62.870 60.000 0.00 0.00 0.00 2.52
4708 6811 4.918201 CCCCGCTCCGCAGATTCC 62.918 72.222 0.00 0.00 0.00 3.01
4709 6812 4.161295 CCCGCTCCGCAGATTCCA 62.161 66.667 0.00 0.00 0.00 3.53
4710 6813 2.587194 CCGCTCCGCAGATTCCAG 60.587 66.667 0.00 0.00 0.00 3.86
4711 6814 2.587194 CGCTCCGCAGATTCCAGG 60.587 66.667 0.00 0.00 0.00 4.45
4712 6815 2.903357 GCTCCGCAGATTCCAGGA 59.097 61.111 0.00 0.00 0.00 3.86
4714 6817 1.227497 CTCCGCAGATTCCAGGAGC 60.227 63.158 6.71 0.00 42.99 4.70
4715 6818 2.967929 CTCCGCAGATTCCAGGAGCG 62.968 65.000 12.77 12.77 42.99 5.03
4716 6819 2.587194 CGCAGATTCCAGGAGCGG 60.587 66.667 12.04 0.83 44.20 5.52
4717 6820 2.203126 GCAGATTCCAGGAGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
4718 6821 3.036429 GCAGATTCCAGGAGCGGGT 62.036 63.158 0.00 0.00 0.00 5.28
4719 6822 1.153289 CAGATTCCAGGAGCGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
4720 6823 1.306141 AGATTCCAGGAGCGGGTGA 60.306 57.895 0.00 0.00 0.00 4.02
4721 6824 0.692419 AGATTCCAGGAGCGGGTGAT 60.692 55.000 0.00 0.00 0.00 3.06
4722 6825 0.181350 GATTCCAGGAGCGGGTGATT 59.819 55.000 0.00 0.00 0.00 2.57
4723 6826 1.416401 GATTCCAGGAGCGGGTGATTA 59.584 52.381 0.00 0.00 0.00 1.75
4724 6827 0.539986 TTCCAGGAGCGGGTGATTAC 59.460 55.000 0.00 0.00 0.00 1.89
4725 6828 1.146263 CCAGGAGCGGGTGATTACC 59.854 63.158 0.00 0.00 46.76 2.85
4735 6838 2.109425 GGTGATTACCGAACAAGGCT 57.891 50.000 0.00 0.00 37.19 4.58
4736 6839 3.255969 GGTGATTACCGAACAAGGCTA 57.744 47.619 0.00 0.00 37.19 3.93
4737 6840 3.805207 GGTGATTACCGAACAAGGCTAT 58.195 45.455 0.00 0.00 37.19 2.97
4738 6841 4.952460 GGTGATTACCGAACAAGGCTATA 58.048 43.478 0.00 0.00 37.19 1.31
4739 6842 4.989168 GGTGATTACCGAACAAGGCTATAG 59.011 45.833 0.00 0.00 37.19 1.31
4740 6843 5.221382 GGTGATTACCGAACAAGGCTATAGA 60.221 44.000 3.21 0.00 37.19 1.98
4741 6844 6.278363 GTGATTACCGAACAAGGCTATAGAA 58.722 40.000 3.21 0.00 33.69 2.10
4742 6845 6.200475 GTGATTACCGAACAAGGCTATAGAAC 59.800 42.308 3.21 0.00 33.69 3.01
4743 6846 3.538634 ACCGAACAAGGCTATAGAACC 57.461 47.619 3.21 0.00 33.69 3.62
4744 6847 2.159142 ACCGAACAAGGCTATAGAACCG 60.159 50.000 3.21 0.00 33.69 4.44
4745 6848 2.100252 CCGAACAAGGCTATAGAACCGA 59.900 50.000 3.21 0.00 0.00 4.69
4746 6849 3.429822 CCGAACAAGGCTATAGAACCGAA 60.430 47.826 3.21 0.00 0.00 4.30
4747 6850 4.178540 CGAACAAGGCTATAGAACCGAAA 58.821 43.478 3.21 0.00 0.00 3.46
4748 6851 4.628333 CGAACAAGGCTATAGAACCGAAAA 59.372 41.667 3.21 0.00 0.00 2.29
4749 6852 5.293569 CGAACAAGGCTATAGAACCGAAAAT 59.706 40.000 3.21 0.00 0.00 1.82
4750 6853 6.509677 CGAACAAGGCTATAGAACCGAAAATC 60.510 42.308 3.21 0.00 0.00 2.17
4751 6854 5.741011 ACAAGGCTATAGAACCGAAAATCA 58.259 37.500 3.21 0.00 0.00 2.57
4752 6855 6.177610 ACAAGGCTATAGAACCGAAAATCAA 58.822 36.000 3.21 0.00 0.00 2.57
4753 6856 6.828785 ACAAGGCTATAGAACCGAAAATCAAT 59.171 34.615 3.21 0.00 0.00 2.57
4754 6857 7.990886 ACAAGGCTATAGAACCGAAAATCAATA 59.009 33.333 3.21 0.00 0.00 1.90
4755 6858 7.964604 AGGCTATAGAACCGAAAATCAATAC 57.035 36.000 3.21 0.00 0.00 1.89
4756 6859 7.506114 AGGCTATAGAACCGAAAATCAATACA 58.494 34.615 3.21 0.00 0.00 2.29
4757 6860 7.990886 AGGCTATAGAACCGAAAATCAATACAA 59.009 33.333 3.21 0.00 0.00 2.41
4758 6861 8.283291 GGCTATAGAACCGAAAATCAATACAAG 58.717 37.037 3.21 0.00 0.00 3.16
4759 6862 7.798982 GCTATAGAACCGAAAATCAATACAAGC 59.201 37.037 3.21 0.00 0.00 4.01
4760 6863 5.957842 AGAACCGAAAATCAATACAAGCA 57.042 34.783 0.00 0.00 0.00 3.91
4761 6864 5.699839 AGAACCGAAAATCAATACAAGCAC 58.300 37.500 0.00 0.00 0.00 4.40
4762 6865 5.240623 AGAACCGAAAATCAATACAAGCACA 59.759 36.000 0.00 0.00 0.00 4.57
4763 6866 5.046910 ACCGAAAATCAATACAAGCACAG 57.953 39.130 0.00 0.00 0.00 3.66
4764 6867 3.853671 CCGAAAATCAATACAAGCACAGC 59.146 43.478 0.00 0.00 0.00 4.40
4765 6868 4.475028 CGAAAATCAATACAAGCACAGCA 58.525 39.130 0.00 0.00 0.00 4.41
4766 6869 5.097529 CGAAAATCAATACAAGCACAGCAT 58.902 37.500 0.00 0.00 0.00 3.79
4767 6870 5.004061 CGAAAATCAATACAAGCACAGCATG 59.996 40.000 0.00 0.00 46.00 4.06
4781 6884 3.325293 CAGCATGTACAGGGCTATAGG 57.675 52.381 20.54 8.24 35.82 2.57
4789 6892 5.027460 TGTACAGGGCTATAGGACAGAAAA 58.973 41.667 1.04 0.00 0.00 2.29
4804 6907 6.072286 AGGACAGAAAATCAATACAAGCACAG 60.072 38.462 0.00 0.00 0.00 3.66
4833 6936 4.507756 TGCGCAAGACAATCATCTACATAC 59.492 41.667 8.16 0.00 43.02 2.39
4868 6971 1.098050 GGCACAAGCTCCTGTAATGG 58.902 55.000 0.00 0.00 41.70 3.16
4877 6980 1.213296 TCCTGTAATGGAAGGAGGGC 58.787 55.000 0.00 0.00 37.68 5.19
4910 7013 0.257616 TGGGCAACAAGGGGTATAGC 59.742 55.000 0.00 0.00 39.74 2.97
4924 7027 0.896479 TATAGCGGCGGATGGCACTA 60.896 55.000 9.78 0.00 46.16 2.74
4934 7037 1.303309 GATGGCACTAGCGCATTCTT 58.697 50.000 11.47 0.00 43.41 2.52
4939 7042 1.203928 CACTAGCGCATTCTTCTCGG 58.796 55.000 11.47 0.00 0.00 4.63
4943 7046 3.264897 CGCATTCTTCTCGGGCGG 61.265 66.667 0.00 0.00 43.63 6.13
4944 7047 2.186903 GCATTCTTCTCGGGCGGA 59.813 61.111 0.00 0.00 0.00 5.54
4966 7069 2.042464 GTGGTGATGCCTAGATCTGGA 58.958 52.381 7.81 0.00 38.35 3.86
5013 7116 1.076014 TGACCTAGGTGCCTCGTGA 59.924 57.895 22.10 0.00 0.00 4.35
5042 7145 3.318017 AGTGAGTTTCCGAGTGAAATCG 58.682 45.455 0.00 0.00 44.44 3.34
5096 7199 4.392940 CACCACTTTCCTCTTGAAGATGT 58.607 43.478 0.00 0.00 33.63 3.06
5099 7202 4.310769 CACTTTCCTCTTGAAGATGTCGT 58.689 43.478 0.00 0.00 33.63 4.34
5127 7230 2.919602 TCTTTTCCCACTATCAGGGCTT 59.080 45.455 0.00 0.00 46.36 4.35
5146 7249 3.347216 CTTCGGGTGAAAATCCATGTCT 58.653 45.455 0.00 0.00 32.66 3.41
5157 7260 0.039764 TCCATGTCTGTCCGGACTCT 59.960 55.000 33.39 11.95 37.16 3.24
5174 7277 1.597854 CTGGAGCGGCACACTTTGA 60.598 57.895 1.45 0.00 0.00 2.69
5252 7355 1.269831 GCGAGGTGTTCAGACTTCAGT 60.270 52.381 0.00 0.00 0.00 3.41
5283 7386 4.139786 TGCTCTTGCTCAGAAATGTCTTT 58.860 39.130 0.00 0.00 40.48 2.52
5287 7390 3.631145 TGCTCAGAAATGTCTTTGTGC 57.369 42.857 0.00 0.00 36.00 4.57
5288 7391 3.216800 TGCTCAGAAATGTCTTTGTGCT 58.783 40.909 2.14 0.00 36.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.747852 GGGGTCGGCTGTTTCAAAAA 59.252 50.000 0.00 0.00 0.00 1.94
3 4 1.448922 CGGGGTCGGCTGTTTCAAAA 61.449 55.000 0.00 0.00 0.00 2.44
4 5 1.894756 CGGGGTCGGCTGTTTCAAA 60.895 57.895 0.00 0.00 0.00 2.69
5 6 2.281208 CGGGGTCGGCTGTTTCAA 60.281 61.111 0.00 0.00 0.00 2.69
15 16 1.538687 AACTACCAAGTCCGGGGTCG 61.539 60.000 0.00 0.00 38.60 4.79
16 17 1.560505 TAACTACCAAGTCCGGGGTC 58.439 55.000 0.00 0.00 38.60 4.46
17 18 2.113807 GATAACTACCAAGTCCGGGGT 58.886 52.381 0.00 2.93 41.21 4.95
18 19 2.102588 CTGATAACTACCAAGTCCGGGG 59.897 54.545 0.00 0.00 33.75 5.73
19 20 2.483188 GCTGATAACTACCAAGTCCGGG 60.483 54.545 0.00 0.00 33.75 5.73
20 21 2.798499 CGCTGATAACTACCAAGTCCGG 60.798 54.545 0.00 0.00 33.75 5.14
21 22 2.098607 TCGCTGATAACTACCAAGTCCG 59.901 50.000 0.00 0.00 33.75 4.79
22 23 3.795623 TCGCTGATAACTACCAAGTCC 57.204 47.619 0.00 0.00 33.75 3.85
23 24 6.476243 TTTTTCGCTGATAACTACCAAGTC 57.524 37.500 0.00 0.00 33.75 3.01
24 25 7.448748 AATTTTTCGCTGATAACTACCAAGT 57.551 32.000 0.00 0.00 37.65 3.16
25 26 9.834628 TTTAATTTTTCGCTGATAACTACCAAG 57.165 29.630 0.00 0.00 0.00 3.61
31 32 9.072294 CCGAATTTTAATTTTTCGCTGATAACT 57.928 29.630 8.58 0.00 40.55 2.24
32 33 8.856247 ACCGAATTTTAATTTTTCGCTGATAAC 58.144 29.630 8.58 0.00 40.55 1.89
33 34 8.973835 ACCGAATTTTAATTTTTCGCTGATAA 57.026 26.923 8.58 0.00 40.55 1.75
34 35 9.710979 CTACCGAATTTTAATTTTTCGCTGATA 57.289 29.630 8.58 1.22 40.55 2.15
35 36 8.241367 ACTACCGAATTTTAATTTTTCGCTGAT 58.759 29.630 8.58 0.42 40.55 2.90
36 37 7.586747 ACTACCGAATTTTAATTTTTCGCTGA 58.413 30.769 8.58 0.00 40.55 4.26
37 38 7.790861 ACTACCGAATTTTAATTTTTCGCTG 57.209 32.000 8.58 4.99 40.55 5.18
38 39 8.806177 AAACTACCGAATTTTAATTTTTCGCT 57.194 26.923 8.58 1.03 40.55 4.93
39 40 9.852481 AAAAACTACCGAATTTTAATTTTTCGC 57.148 25.926 8.58 0.00 40.55 4.70
62 63 3.309600 TTCGGGTTAGGGTTCCAAAAA 57.690 42.857 0.00 0.00 0.00 1.94
63 64 3.529216 ATTCGGGTTAGGGTTCCAAAA 57.471 42.857 0.00 0.00 0.00 2.44
64 65 3.158676 CAATTCGGGTTAGGGTTCCAAA 58.841 45.455 0.00 0.00 0.00 3.28
65 66 2.108601 ACAATTCGGGTTAGGGTTCCAA 59.891 45.455 0.00 0.00 0.00 3.53
66 67 1.706305 ACAATTCGGGTTAGGGTTCCA 59.294 47.619 0.00 0.00 0.00 3.53
67 68 2.502142 ACAATTCGGGTTAGGGTTCC 57.498 50.000 0.00 0.00 0.00 3.62
68 69 4.212143 ACTACAATTCGGGTTAGGGTTC 57.788 45.455 0.00 0.00 0.00 3.62
69 70 4.779489 ACTACTACAATTCGGGTTAGGGTT 59.221 41.667 0.00 0.00 0.00 4.11
70 71 4.356436 ACTACTACAATTCGGGTTAGGGT 58.644 43.478 0.00 0.00 0.00 4.34
71 72 5.349061 AACTACTACAATTCGGGTTAGGG 57.651 43.478 0.00 0.00 0.00 3.53
72 73 8.823818 CATAAAACTACTACAATTCGGGTTAGG 58.176 37.037 0.00 0.00 0.00 2.69
73 74 8.333186 GCATAAAACTACTACAATTCGGGTTAG 58.667 37.037 0.00 0.00 0.00 2.34
74 75 8.042515 AGCATAAAACTACTACAATTCGGGTTA 58.957 33.333 0.00 0.00 0.00 2.85
75 76 6.882678 AGCATAAAACTACTACAATTCGGGTT 59.117 34.615 0.00 0.00 0.00 4.11
76 77 6.412214 AGCATAAAACTACTACAATTCGGGT 58.588 36.000 0.00 0.00 0.00 5.28
77 78 6.920569 AGCATAAAACTACTACAATTCGGG 57.079 37.500 0.00 0.00 0.00 5.14
158 160 5.045578 ACTTGACCATCTGCCTAACACTTAT 60.046 40.000 0.00 0.00 0.00 1.73
207 209 8.682936 ATCTAGCGATTTTCTCCAACATTTAT 57.317 30.769 0.00 0.00 0.00 1.40
225 233 2.772287 GGGGAGGATTTCAATCTAGCG 58.228 52.381 0.00 0.00 35.73 4.26
531 966 2.955660 CTGTTTCAAAAGTGGTGCCCTA 59.044 45.455 0.00 0.00 0.00 3.53
607 1075 3.499918 CACCAAGAGCAAACAGGTAAGAG 59.500 47.826 0.00 0.00 0.00 2.85
620 1088 2.353889 CACATAGCATGTCACCAAGAGC 59.646 50.000 0.00 0.00 42.70 4.09
645 1113 8.834465 ACATTCGATGAGAAATTTAAGATGGAG 58.166 33.333 0.00 0.00 42.91 3.86
678 1146 7.148606 GCTTGCAGATATAGATGTCTTGATGAC 60.149 40.741 0.00 0.00 45.54 3.06
689 1157 5.191124 TCCATCATGGCTTGCAGATATAGAT 59.809 40.000 0.00 0.00 37.47 1.98
693 1161 3.181437 TGTCCATCATGGCTTGCAGATAT 60.181 43.478 0.00 0.00 37.47 1.63
696 1164 0.328926 TGTCCATCATGGCTTGCAGA 59.671 50.000 0.00 0.00 37.47 4.26
704 1172 2.487934 GTCTCCGAATGTCCATCATGG 58.512 52.381 0.00 0.00 39.43 3.66
705 1173 2.103771 AGGTCTCCGAATGTCCATCATG 59.896 50.000 0.00 0.00 36.81 3.07
719 1229 1.671901 CGGCTTCCAGAGAGGTCTCC 61.672 65.000 3.26 0.00 43.88 3.71
726 1236 1.693627 GACTATCCGGCTTCCAGAGA 58.306 55.000 0.00 0.00 0.00 3.10
728 1238 0.759436 GGGACTATCCGGCTTCCAGA 60.759 60.000 0.00 0.00 37.43 3.86
780 1298 0.260816 ATGCCCTCTACCGAGTACCA 59.739 55.000 0.00 0.00 35.43 3.25
782 1300 1.068741 CCAATGCCCTCTACCGAGTAC 59.931 57.143 0.00 0.00 35.43 2.73
802 1322 6.621613 ACCTTCAAGAAAGCGGATTTTATTC 58.378 36.000 0.00 0.00 33.29 1.75
842 1362 1.918868 GCGCCCTTTAAACACGGGAG 61.919 60.000 13.82 11.60 40.55 4.30
884 1406 1.512926 CGTTAACTCACTTGCTGGCT 58.487 50.000 3.71 0.00 0.00 4.75
989 1512 2.679930 CGAGGGGTTAGCTAGGGTTTTG 60.680 54.545 0.00 0.00 0.00 2.44
1010 1537 0.527565 TGCTACTACGGTTTCGGGAC 59.472 55.000 0.00 0.00 41.39 4.46
1386 1916 0.119155 AAGGGATGGGAGACTGACCA 59.881 55.000 0.00 0.00 41.76 4.02
1399 1929 0.035056 CCAAGTCGAGGCAAAGGGAT 60.035 55.000 0.00 0.00 0.00 3.85
1406 1936 3.691342 CCGGTCCAAGTCGAGGCA 61.691 66.667 0.00 0.00 0.00 4.75
1454 1992 2.609491 CGACATGTCCCGAAGAAACTGA 60.609 50.000 20.03 0.00 0.00 3.41
1465 2003 2.365582 ACCAAATTAGCGACATGTCCC 58.634 47.619 20.03 11.46 0.00 4.46
1630 2170 7.618019 TCTAGAGGCAAACCATCTGTATATT 57.382 36.000 0.00 0.00 39.06 1.28
1723 2263 2.158813 AGAAATGTGTTGGACGGACTGT 60.159 45.455 0.00 0.00 0.00 3.55
1724 2264 2.480419 GAGAAATGTGTTGGACGGACTG 59.520 50.000 0.00 0.00 0.00 3.51
1815 2355 5.723672 ACTTCGATGAGAACTCCAAGTTA 57.276 39.130 5.16 0.00 38.80 2.24
1816 2356 4.608948 ACTTCGATGAGAACTCCAAGTT 57.391 40.909 5.16 0.00 41.95 2.66
1817 2357 4.202264 ACAACTTCGATGAGAACTCCAAGT 60.202 41.667 5.16 0.98 34.66 3.16
1818 2358 4.310769 ACAACTTCGATGAGAACTCCAAG 58.689 43.478 5.16 0.45 34.66 3.61
1819 2359 4.336889 ACAACTTCGATGAGAACTCCAA 57.663 40.909 5.16 0.00 34.66 3.53
1820 2360 4.082190 CCTACAACTTCGATGAGAACTCCA 60.082 45.833 5.16 0.00 34.66 3.86
1821 2361 4.082136 ACCTACAACTTCGATGAGAACTCC 60.082 45.833 5.16 0.00 34.66 3.85
1823 2363 5.470047 AACCTACAACTTCGATGAGAACT 57.530 39.130 5.16 0.00 34.66 3.01
1824 2364 4.323868 CGAACCTACAACTTCGATGAGAAC 59.676 45.833 5.16 0.00 41.47 3.01
1856 2396 8.961294 AAAGATTGATCACAAACATTTCCAAA 57.039 26.923 0.00 0.00 39.54 3.28
1881 2421 7.311092 TCCAAGTTATGTCAGGAGTAAAAGA 57.689 36.000 0.00 0.00 0.00 2.52
1999 2540 8.744652 TGAACTTCTCTTTTGTCCATAAAACAA 58.255 29.630 0.00 0.00 34.93 2.83
2327 3082 2.175878 TCTGCTGCTTCCTGAACTTC 57.824 50.000 0.00 0.00 0.00 3.01
2393 3148 5.305644 ACAACTCTGTTCTTCCTCACATACT 59.694 40.000 0.00 0.00 28.57 2.12
2552 3310 6.710597 ATCATGGAACCTGAAATCAGAATG 57.289 37.500 11.94 7.52 46.59 2.67
2598 3356 6.881065 ACTCTCAATTACTTGCATGCTTTAGA 59.119 34.615 20.33 8.76 32.11 2.10
2600 3358 7.452880 AACTCTCAATTACTTGCATGCTTTA 57.547 32.000 20.33 4.32 32.11 1.85
2605 3363 8.578308 TTTTGAAACTCTCAATTACTTGCATG 57.422 30.769 0.00 0.00 43.64 4.06
2646 3404 6.237901 TGCATAAAACATACAAGACTGAGGT 58.762 36.000 0.00 0.00 0.00 3.85
2791 3558 3.056588 TGCATCAGAACACATGTGCTA 57.943 42.857 25.68 7.16 30.45 3.49
2792 3559 1.900245 TGCATCAGAACACATGTGCT 58.100 45.000 25.68 14.31 33.09 4.40
2869 3637 8.100791 TGAGGAAACAGTAGTATTATTGCTTGT 58.899 33.333 0.00 0.00 0.00 3.16
2902 3670 8.939201 TGAGTATTGAGAATGAGATGAGAAAC 57.061 34.615 0.00 0.00 0.00 2.78
2916 3684 4.194640 GAGGCATGCTTTGAGTATTGAGA 58.805 43.478 18.92 0.00 0.00 3.27
2920 3688 4.789807 AGATGAGGCATGCTTTGAGTATT 58.210 39.130 18.92 0.00 0.00 1.89
2921 3689 4.434545 AGATGAGGCATGCTTTGAGTAT 57.565 40.909 18.92 2.97 0.00 2.12
2936 3704 2.469274 AGACAGTGGCACAAGATGAG 57.531 50.000 21.41 2.91 44.16 2.90
2945 3713 1.762370 TGTTCTGAGAAGACAGTGGCA 59.238 47.619 0.00 0.00 38.79 4.92
3061 3829 1.203052 CTGCTGTTACCATTGGGCAAG 59.797 52.381 7.78 0.47 37.90 4.01
3157 3926 4.871933 ATTCTGTGGTTTTGGAACATCC 57.128 40.909 0.00 0.00 39.30 3.51
3169 3938 6.838382 ACTTGGACTTTTAGTATTCTGTGGT 58.162 36.000 0.00 0.00 0.00 4.16
3186 3955 6.720012 ACAAACACAATTTTGAACTTGGAC 57.280 33.333 0.00 0.00 38.54 4.02
3223 3992 1.610522 GCCTTGTCTTTCACAGCACAT 59.389 47.619 0.00 0.00 35.97 3.21
3225 3994 0.312102 GGCCTTGTCTTTCACAGCAC 59.688 55.000 0.00 0.00 35.97 4.40
3278 4047 5.990120 ATATTTGCTTGGGCTTGGATATC 57.010 39.130 0.00 0.00 39.59 1.63
3355 4124 8.731275 TCGAAATAGAATTTCATAGCCTTCAA 57.269 30.769 11.69 0.00 0.00 2.69
3456 4230 8.090788 AGGTACATTTCATAGCTTCTTAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
3592 4829 9.851686 ACAAGAAATTATATCCATTGAGTAGCA 57.148 29.630 0.00 0.00 0.00 3.49
3829 5068 8.886719 CAAGTGCAGATTTTAGATCTACATTGA 58.113 33.333 0.67 0.00 0.00 2.57
3947 5186 7.591006 ATTGTGTTATACCTTGTAGTTGTCG 57.409 36.000 0.00 0.00 0.00 4.35
3976 5215 9.042008 ACATACGCTCGACAAAATAAGATATTT 57.958 29.630 0.00 0.00 0.00 1.40
3982 5221 7.953173 TGTTAAACATACGCTCGACAAAATAAG 59.047 33.333 0.00 0.00 0.00 1.73
4017 5256 9.865321 AAACACGTTGCTTCTCTTTAGTATATA 57.135 29.630 0.00 0.00 0.00 0.86
4021 5271 6.281848 CAAACACGTTGCTTCTCTTTAGTA 57.718 37.500 0.00 0.00 0.00 1.82
4036 5286 1.391157 AACATGGCCTGCAAACACGT 61.391 50.000 3.32 0.00 0.00 4.49
4159 5409 9.302345 GAAAGTGAAATCTAGATTCATACGACA 57.698 33.333 18.19 7.65 0.00 4.35
4330 5580 7.510675 AAAGAATATAAGGGACAGGTTCTGA 57.489 36.000 1.59 0.00 35.18 3.27
4331 5581 7.611855 ACAAAAGAATATAAGGGACAGGTTCTG 59.388 37.037 0.00 0.00 37.52 3.02
4333 5583 7.628580 GCACAAAAGAATATAAGGGACAGGTTC 60.629 40.741 0.00 0.00 0.00 3.62
4419 5697 2.885266 CAGCCTTCTATGATTGCAGCAT 59.115 45.455 0.00 8.84 0.00 3.79
4433 5711 5.573337 AATGATGCTAAAGTTCAGCCTTC 57.427 39.130 0.00 0.00 38.29 3.46
4434 5712 7.651027 ATTAATGATGCTAAAGTTCAGCCTT 57.349 32.000 0.00 0.00 38.29 4.35
4435 5713 7.651027 AATTAATGATGCTAAAGTTCAGCCT 57.349 32.000 0.00 0.00 38.29 4.58
4436 5714 9.237846 GTAAATTAATGATGCTAAAGTTCAGCC 57.762 33.333 0.00 0.00 38.29 4.85
4455 5733 8.241367 GCTCCGAAATTTCTTGGAAGTAAATTA 58.759 33.333 15.92 0.00 32.98 1.40
4456 5734 7.090808 GCTCCGAAATTTCTTGGAAGTAAATT 58.909 34.615 15.92 0.00 35.01 1.82
4457 5735 6.208599 TGCTCCGAAATTTCTTGGAAGTAAAT 59.791 34.615 15.92 0.00 0.00 1.40
4458 5736 5.533154 TGCTCCGAAATTTCTTGGAAGTAAA 59.467 36.000 15.92 0.00 0.00 2.01
4459 5737 5.067273 TGCTCCGAAATTTCTTGGAAGTAA 58.933 37.500 15.92 0.71 0.00 2.24
4473 5751 8.902540 ATAGTTGTATATGATTTGCTCCGAAA 57.097 30.769 0.00 0.00 0.00 3.46
4508 5786 7.643569 TGCTCATGCCTTTCATCTAAAAATA 57.356 32.000 0.00 0.00 38.71 1.40
4518 6621 1.074405 AGGAGTTGCTCATGCCTTTCA 59.926 47.619 0.00 0.00 38.71 2.69
4519 6622 1.471684 CAGGAGTTGCTCATGCCTTTC 59.528 52.381 0.00 0.00 35.57 2.62
4544 6647 8.929487 CCTGGTTTGGGCCTTTATTAATTTATA 58.071 33.333 4.53 0.00 0.00 0.98
4545 6648 7.637078 GCCTGGTTTGGGCCTTTATTAATTTAT 60.637 37.037 4.53 0.00 43.49 1.40
4578 6681 8.838452 TTTTGTATGTTGTTTACGTTGTAAGG 57.162 30.769 0.00 0.00 0.00 2.69
4605 6708 3.691498 GAACAGGGCGTATGTATTTTGC 58.309 45.455 0.00 0.00 0.00 3.68
4617 6720 2.108362 GGGGTATCGAACAGGGCG 59.892 66.667 0.00 0.00 0.00 6.13
4618 6721 1.049289 AGAGGGGTATCGAACAGGGC 61.049 60.000 0.00 0.00 0.00 5.19
4619 6722 1.962100 GTAGAGGGGTATCGAACAGGG 59.038 57.143 0.00 0.00 0.00 4.45
4620 6723 2.885894 GAGTAGAGGGGTATCGAACAGG 59.114 54.545 0.00 0.00 0.00 4.00
4621 6724 2.885894 GGAGTAGAGGGGTATCGAACAG 59.114 54.545 0.00 0.00 0.00 3.16
4622 6725 2.242965 TGGAGTAGAGGGGTATCGAACA 59.757 50.000 0.00 0.00 0.00 3.18
4623 6726 2.622470 GTGGAGTAGAGGGGTATCGAAC 59.378 54.545 0.00 0.00 0.00 3.95
4624 6727 2.242965 TGTGGAGTAGAGGGGTATCGAA 59.757 50.000 0.00 0.00 0.00 3.71
4625 6728 1.848388 TGTGGAGTAGAGGGGTATCGA 59.152 52.381 0.00 0.00 0.00 3.59
4626 6729 2.359981 TGTGGAGTAGAGGGGTATCG 57.640 55.000 0.00 0.00 0.00 2.92
4627 6730 3.637694 GAGTTGTGGAGTAGAGGGGTATC 59.362 52.174 0.00 0.00 0.00 2.24
4628 6731 3.630311 GGAGTTGTGGAGTAGAGGGGTAT 60.630 52.174 0.00 0.00 0.00 2.73
4629 6732 2.292061 GGAGTTGTGGAGTAGAGGGGTA 60.292 54.545 0.00 0.00 0.00 3.69
4630 6733 1.552719 GGAGTTGTGGAGTAGAGGGGT 60.553 57.143 0.00 0.00 0.00 4.95
4631 6734 1.196012 GGAGTTGTGGAGTAGAGGGG 58.804 60.000 0.00 0.00 0.00 4.79
4632 6735 0.818296 CGGAGTTGTGGAGTAGAGGG 59.182 60.000 0.00 0.00 0.00 4.30
4633 6736 0.818296 CCGGAGTTGTGGAGTAGAGG 59.182 60.000 0.00 0.00 0.00 3.69
4634 6737 0.818296 CCCGGAGTTGTGGAGTAGAG 59.182 60.000 0.73 0.00 0.00 2.43
4635 6738 0.406750 TCCCGGAGTTGTGGAGTAGA 59.593 55.000 0.73 0.00 0.00 2.59
4636 6739 0.818296 CTCCCGGAGTTGTGGAGTAG 59.182 60.000 0.73 0.00 40.66 2.57
4637 6740 1.255667 GCTCCCGGAGTTGTGGAGTA 61.256 60.000 16.09 0.00 46.05 2.59
4638 6741 2.584391 GCTCCCGGAGTTGTGGAGT 61.584 63.158 16.09 0.00 46.05 3.85
4639 6742 2.266055 GCTCCCGGAGTTGTGGAG 59.734 66.667 16.09 0.00 46.87 3.86
4640 6743 3.691342 CGCTCCCGGAGTTGTGGA 61.691 66.667 16.09 0.00 31.39 4.02
4651 6754 4.400961 AACAGCAGCTCCGCTCCC 62.401 66.667 0.00 0.00 41.38 4.30
4652 6755 2.817396 GAACAGCAGCTCCGCTCC 60.817 66.667 0.00 0.00 41.38 4.70
4653 6756 1.230635 TTTGAACAGCAGCTCCGCTC 61.231 55.000 0.00 0.00 41.38 5.03
4654 6757 0.607489 ATTTGAACAGCAGCTCCGCT 60.607 50.000 0.00 0.00 45.21 5.52
4655 6758 0.179179 GATTTGAACAGCAGCTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
4656 6759 0.095935 CGATTTGAACAGCAGCTCCG 59.904 55.000 0.00 0.00 0.00 4.63
4657 6760 1.442769 TCGATTTGAACAGCAGCTCC 58.557 50.000 0.00 0.00 0.00 4.70
4658 6761 2.159599 CCTTCGATTTGAACAGCAGCTC 60.160 50.000 0.00 0.00 31.87 4.09
4659 6762 1.808945 CCTTCGATTTGAACAGCAGCT 59.191 47.619 0.00 0.00 31.87 4.24
4660 6763 1.806542 TCCTTCGATTTGAACAGCAGC 59.193 47.619 0.00 0.00 31.87 5.25
4661 6764 3.070018 ACTCCTTCGATTTGAACAGCAG 58.930 45.455 0.00 0.00 31.87 4.24
4662 6765 3.126001 ACTCCTTCGATTTGAACAGCA 57.874 42.857 0.00 0.00 31.87 4.41
4663 6766 3.251004 ACAACTCCTTCGATTTGAACAGC 59.749 43.478 0.00 0.00 33.89 4.40
4664 6767 4.319766 CCACAACTCCTTCGATTTGAACAG 60.320 45.833 0.00 0.00 33.89 3.16
4665 6768 3.563808 CCACAACTCCTTCGATTTGAACA 59.436 43.478 0.00 0.00 33.89 3.18
4666 6769 3.564225 ACCACAACTCCTTCGATTTGAAC 59.436 43.478 0.00 0.00 33.89 3.18
4667 6770 3.815809 ACCACAACTCCTTCGATTTGAA 58.184 40.909 0.00 0.00 33.89 2.69
4668 6771 3.485463 ACCACAACTCCTTCGATTTGA 57.515 42.857 0.00 0.00 33.89 2.69
4669 6772 4.537015 GAAACCACAACTCCTTCGATTTG 58.463 43.478 0.00 0.00 35.39 2.32
4670 6773 3.568430 GGAAACCACAACTCCTTCGATTT 59.432 43.478 0.00 0.00 0.00 2.17
4671 6774 3.146847 GGAAACCACAACTCCTTCGATT 58.853 45.455 0.00 0.00 0.00 3.34
4672 6775 2.779506 GGAAACCACAACTCCTTCGAT 58.220 47.619 0.00 0.00 0.00 3.59
4673 6776 2.249844 GGAAACCACAACTCCTTCGA 57.750 50.000 0.00 0.00 0.00 3.71
4696 6799 1.227497 GCTCCTGGAATCTGCGGAG 60.227 63.158 0.00 0.00 44.58 4.63
4697 6800 2.903357 GCTCCTGGAATCTGCGGA 59.097 61.111 0.00 0.00 0.00 5.54
4698 6801 2.587194 CGCTCCTGGAATCTGCGG 60.587 66.667 17.36 2.68 42.46 5.69
4699 6802 2.587194 CCGCTCCTGGAATCTGCG 60.587 66.667 17.98 17.98 45.22 5.18
4700 6803 2.203126 CCCGCTCCTGGAATCTGC 60.203 66.667 0.00 0.00 0.00 4.26
4701 6804 1.153289 CACCCGCTCCTGGAATCTG 60.153 63.158 0.00 0.00 0.00 2.90
4702 6805 0.692419 ATCACCCGCTCCTGGAATCT 60.692 55.000 0.00 0.00 0.00 2.40
4703 6806 0.181350 AATCACCCGCTCCTGGAATC 59.819 55.000 0.00 0.00 0.00 2.52
4704 6807 1.141053 GTAATCACCCGCTCCTGGAAT 59.859 52.381 0.00 0.00 0.00 3.01
4705 6808 0.539986 GTAATCACCCGCTCCTGGAA 59.460 55.000 0.00 0.00 0.00 3.53
4706 6809 1.335132 GGTAATCACCCGCTCCTGGA 61.335 60.000 0.00 0.00 39.11 3.86
4707 6810 1.146263 GGTAATCACCCGCTCCTGG 59.854 63.158 0.00 0.00 39.11 4.45
4708 6811 1.227263 CGGTAATCACCCGCTCCTG 60.227 63.158 0.00 0.00 42.43 3.86
4709 6812 0.974010 TTCGGTAATCACCCGCTCCT 60.974 55.000 0.00 0.00 45.09 3.69
4710 6813 0.808847 GTTCGGTAATCACCCGCTCC 60.809 60.000 0.00 0.00 45.09 4.70
4711 6814 0.108520 TGTTCGGTAATCACCCGCTC 60.109 55.000 0.00 0.00 45.09 5.03
4712 6815 0.322322 TTGTTCGGTAATCACCCGCT 59.678 50.000 0.00 0.00 45.09 5.52
4713 6816 0.725117 CTTGTTCGGTAATCACCCGC 59.275 55.000 0.00 0.00 45.09 6.13
4714 6817 1.365699 CCTTGTTCGGTAATCACCCG 58.634 55.000 0.00 0.00 46.83 5.28
4715 6818 1.092348 GCCTTGTTCGGTAATCACCC 58.908 55.000 0.00 0.00 42.43 4.61
4716 6819 2.109425 AGCCTTGTTCGGTAATCACC 57.891 50.000 0.00 0.00 41.93 4.02
4717 6820 5.839621 TCTATAGCCTTGTTCGGTAATCAC 58.160 41.667 0.00 0.00 0.00 3.06
4718 6821 6.278363 GTTCTATAGCCTTGTTCGGTAATCA 58.722 40.000 0.00 0.00 0.00 2.57
4719 6822 5.695363 GGTTCTATAGCCTTGTTCGGTAATC 59.305 44.000 0.00 0.00 0.00 1.75
4720 6823 5.608449 GGTTCTATAGCCTTGTTCGGTAAT 58.392 41.667 0.00 0.00 0.00 1.89
4721 6824 4.440525 CGGTTCTATAGCCTTGTTCGGTAA 60.441 45.833 0.00 0.00 0.00 2.85
4722 6825 3.067180 CGGTTCTATAGCCTTGTTCGGTA 59.933 47.826 0.00 0.00 0.00 4.02
4723 6826 2.159142 CGGTTCTATAGCCTTGTTCGGT 60.159 50.000 0.00 0.00 0.00 4.69
4724 6827 2.100252 TCGGTTCTATAGCCTTGTTCGG 59.900 50.000 0.00 0.00 0.00 4.30
4725 6828 3.431922 TCGGTTCTATAGCCTTGTTCG 57.568 47.619 0.00 0.00 0.00 3.95
4726 6829 6.315393 TGATTTTCGGTTCTATAGCCTTGTTC 59.685 38.462 0.00 0.00 0.00 3.18
4727 6830 6.177610 TGATTTTCGGTTCTATAGCCTTGTT 58.822 36.000 0.00 0.00 0.00 2.83
4728 6831 5.741011 TGATTTTCGGTTCTATAGCCTTGT 58.259 37.500 0.00 0.00 0.00 3.16
4729 6832 6.677781 TTGATTTTCGGTTCTATAGCCTTG 57.322 37.500 0.00 0.00 0.00 3.61
4730 6833 7.990886 TGTATTGATTTTCGGTTCTATAGCCTT 59.009 33.333 0.00 0.00 0.00 4.35
4731 6834 7.506114 TGTATTGATTTTCGGTTCTATAGCCT 58.494 34.615 0.00 0.00 0.00 4.58
4732 6835 7.724305 TGTATTGATTTTCGGTTCTATAGCC 57.276 36.000 0.00 0.00 0.00 3.93
4733 6836 7.798982 GCTTGTATTGATTTTCGGTTCTATAGC 59.201 37.037 0.00 0.00 0.00 2.97
4734 6837 8.826710 TGCTTGTATTGATTTTCGGTTCTATAG 58.173 33.333 0.00 0.00 0.00 1.31
4735 6838 8.609176 GTGCTTGTATTGATTTTCGGTTCTATA 58.391 33.333 0.00 0.00 0.00 1.31
4736 6839 7.120579 TGTGCTTGTATTGATTTTCGGTTCTAT 59.879 33.333 0.00 0.00 0.00 1.98
4737 6840 6.428465 TGTGCTTGTATTGATTTTCGGTTCTA 59.572 34.615 0.00 0.00 0.00 2.10
4738 6841 5.240623 TGTGCTTGTATTGATTTTCGGTTCT 59.759 36.000 0.00 0.00 0.00 3.01
4739 6842 5.457140 TGTGCTTGTATTGATTTTCGGTTC 58.543 37.500 0.00 0.00 0.00 3.62
4740 6843 5.446143 TGTGCTTGTATTGATTTTCGGTT 57.554 34.783 0.00 0.00 0.00 4.44
4741 6844 4.615912 GCTGTGCTTGTATTGATTTTCGGT 60.616 41.667 0.00 0.00 0.00 4.69
4742 6845 3.853671 GCTGTGCTTGTATTGATTTTCGG 59.146 43.478 0.00 0.00 0.00 4.30
4743 6846 4.475028 TGCTGTGCTTGTATTGATTTTCG 58.525 39.130 0.00 0.00 0.00 3.46
4744 6847 5.865552 ACATGCTGTGCTTGTATTGATTTTC 59.134 36.000 8.90 0.00 43.37 2.29
4745 6848 5.786311 ACATGCTGTGCTTGTATTGATTTT 58.214 33.333 8.90 0.00 43.37 1.82
4746 6849 5.395682 ACATGCTGTGCTTGTATTGATTT 57.604 34.783 8.90 0.00 43.37 2.17
4747 6850 5.415389 TGTACATGCTGTGCTTGTATTGATT 59.585 36.000 17.09 0.00 45.79 2.57
4748 6851 4.943093 TGTACATGCTGTGCTTGTATTGAT 59.057 37.500 17.09 0.00 45.79 2.57
4749 6852 4.322567 TGTACATGCTGTGCTTGTATTGA 58.677 39.130 17.09 6.34 45.79 2.57
4750 6853 4.437794 CCTGTACATGCTGTGCTTGTATTG 60.438 45.833 17.09 13.39 45.79 1.90
4751 6854 3.691118 CCTGTACATGCTGTGCTTGTATT 59.309 43.478 17.09 0.00 45.79 1.89
4752 6855 3.273434 CCTGTACATGCTGTGCTTGTAT 58.727 45.455 17.09 0.00 45.79 2.29
4753 6856 2.615240 CCCTGTACATGCTGTGCTTGTA 60.615 50.000 12.24 12.24 43.37 2.41
4754 6857 1.527034 CCTGTACATGCTGTGCTTGT 58.473 50.000 13.90 13.90 46.09 3.16
4755 6858 0.806868 CCCTGTACATGCTGTGCTTG 59.193 55.000 0.00 4.28 39.19 4.01
4756 6859 0.962356 GCCCTGTACATGCTGTGCTT 60.962 55.000 9.59 0.00 33.97 3.91
4757 6860 1.377725 GCCCTGTACATGCTGTGCT 60.378 57.895 9.59 0.00 33.97 4.40
4758 6861 0.107703 TAGCCCTGTACATGCTGTGC 60.108 55.000 23.24 8.97 36.57 4.57
4759 6862 2.627515 ATAGCCCTGTACATGCTGTG 57.372 50.000 23.24 1.08 36.57 3.66
4760 6863 2.634940 CCTATAGCCCTGTACATGCTGT 59.365 50.000 23.24 20.06 36.57 4.40
4761 6864 2.899900 TCCTATAGCCCTGTACATGCTG 59.100 50.000 23.24 11.31 36.57 4.41
4762 6865 2.900546 GTCCTATAGCCCTGTACATGCT 59.099 50.000 20.00 20.00 39.10 3.79
4763 6866 2.632996 TGTCCTATAGCCCTGTACATGC 59.367 50.000 8.98 8.98 0.00 4.06
4764 6867 4.152647 TCTGTCCTATAGCCCTGTACATG 58.847 47.826 0.00 0.00 0.00 3.21
4765 6868 4.471078 TCTGTCCTATAGCCCTGTACAT 57.529 45.455 0.00 0.00 0.00 2.29
4766 6869 3.965470 TCTGTCCTATAGCCCTGTACA 57.035 47.619 0.00 0.00 0.00 2.90
4767 6870 5.609533 TTTTCTGTCCTATAGCCCTGTAC 57.390 43.478 0.00 0.00 0.00 2.90
4768 6871 5.903010 TGATTTTCTGTCCTATAGCCCTGTA 59.097 40.000 0.00 0.00 0.00 2.74
4769 6872 4.721776 TGATTTTCTGTCCTATAGCCCTGT 59.278 41.667 0.00 0.00 0.00 4.00
4770 6873 5.296151 TGATTTTCTGTCCTATAGCCCTG 57.704 43.478 0.00 0.00 0.00 4.45
4771 6874 5.975988 TTGATTTTCTGTCCTATAGCCCT 57.024 39.130 0.00 0.00 0.00 5.19
4772 6875 7.224297 TGTATTGATTTTCTGTCCTATAGCCC 58.776 38.462 0.00 0.00 0.00 5.19
4773 6876 8.677148 TTGTATTGATTTTCTGTCCTATAGCC 57.323 34.615 0.00 0.00 0.00 3.93
4774 6877 8.286097 GCTTGTATTGATTTTCTGTCCTATAGC 58.714 37.037 0.00 0.00 0.00 2.97
4775 6878 9.330063 TGCTTGTATTGATTTTCTGTCCTATAG 57.670 33.333 0.00 0.00 0.00 1.31
4776 6879 9.109393 GTGCTTGTATTGATTTTCTGTCCTATA 57.891 33.333 0.00 0.00 0.00 1.31
4777 6880 7.611467 TGTGCTTGTATTGATTTTCTGTCCTAT 59.389 33.333 0.00 0.00 0.00 2.57
4778 6881 6.939730 TGTGCTTGTATTGATTTTCTGTCCTA 59.060 34.615 0.00 0.00 0.00 2.94
4779 6882 5.769662 TGTGCTTGTATTGATTTTCTGTCCT 59.230 36.000 0.00 0.00 0.00 3.85
4780 6883 6.012658 TGTGCTTGTATTGATTTTCTGTCC 57.987 37.500 0.00 0.00 0.00 4.02
4781 6884 5.570589 GCTGTGCTTGTATTGATTTTCTGTC 59.429 40.000 0.00 0.00 0.00 3.51
4789 6892 4.740268 CATGTTGCTGTGCTTGTATTGAT 58.260 39.130 0.00 0.00 0.00 2.57
4804 6907 0.986992 GATTGTCTTGCGCATGTTGC 59.013 50.000 21.14 13.56 40.69 4.17
4833 6936 2.928694 GTGCCATTTTCGTTGGTACAG 58.071 47.619 6.13 0.00 45.79 2.74
4860 6963 0.541863 ACGCCCTCCTTCCATTACAG 59.458 55.000 0.00 0.00 0.00 2.74
4868 6971 0.179097 GACATCAGACGCCCTCCTTC 60.179 60.000 0.00 0.00 0.00 3.46
4877 6980 0.391528 TGCCCACATGACATCAGACG 60.392 55.000 0.00 0.00 0.00 4.18
4924 7027 2.512515 GCCCGAGAAGAATGCGCT 60.513 61.111 9.73 0.00 0.00 5.92
4927 7030 1.884926 CTCCGCCCGAGAAGAATGC 60.885 63.158 0.00 0.00 41.63 3.56
4943 7046 2.036992 CAGATCTAGGCATCACCACCTC 59.963 54.545 0.00 0.00 43.14 3.85
4944 7047 2.045524 CAGATCTAGGCATCACCACCT 58.954 52.381 0.00 0.00 43.14 4.00
4950 7053 2.641321 CCCAATCCAGATCTAGGCATCA 59.359 50.000 0.00 0.00 0.00 3.07
4966 7069 1.913419 ACGATGTCCAACCTACCCAAT 59.087 47.619 0.00 0.00 0.00 3.16
5013 7116 3.005554 CTCGGAAACTCACTTGCATCAT 58.994 45.455 0.00 0.00 0.00 2.45
5078 7181 4.608948 ACGACATCTTCAAGAGGAAAGT 57.391 40.909 5.96 0.00 34.44 2.66
5096 7199 1.598685 GGGAAAAGACCCGCAACGA 60.599 57.895 0.00 0.00 40.49 3.85
5127 7230 2.039746 ACAGACATGGATTTTCACCCGA 59.960 45.455 0.00 0.00 0.00 5.14
5146 7249 3.062466 CGCTCCAGAGTCCGGACA 61.062 66.667 35.00 14.26 0.00 4.02
5157 7260 1.153066 TTCAAAGTGTGCCGCTCCA 60.153 52.632 0.00 0.00 0.00 3.86
5174 7277 2.072366 CCTTGGGAGGGTAACGGTT 58.928 57.895 0.00 0.00 39.55 4.44
5229 7332 0.687354 AAGTCTGAACACCTCGCCAT 59.313 50.000 0.00 0.00 0.00 4.40
5252 7355 0.320771 GAGCAAGAGCAAAGGACGGA 60.321 55.000 0.00 0.00 45.49 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.