Multiple sequence alignment - TraesCS1B01G244900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G244900 chr1B 100.000 2459 0 0 1 2459 434334395 434336853 0.000000e+00 4542.0
1 TraesCS1B01G244900 chr1B 95.582 747 6 4 742 1462 434430027 434429282 0.000000e+00 1171.0
2 TraesCS1B01G244900 chr1B 89.004 673 56 14 803 1463 344375839 344375173 0.000000e+00 817.0
3 TraesCS1B01G244900 chr1A 94.062 741 21 13 742 1461 401227595 401226857 0.000000e+00 1103.0
4 TraesCS1B01G244900 chr1A 93.218 752 19 14 742 1462 400955286 400956036 0.000000e+00 1077.0
5 TraesCS1B01G244900 chr1D 93.067 750 22 15 742 1462 321710888 321710140 0.000000e+00 1070.0
6 TraesCS1B01G244900 chr1D 93.504 508 33 0 1171 1678 321330248 321330755 0.000000e+00 756.0
7 TraesCS1B01G244900 chr1D 89.298 299 29 3 2153 2448 321331214 321331512 2.990000e-99 372.0
8 TraesCS1B01G244900 chr1D 86.901 313 24 7 414 723 321321873 321322171 3.920000e-88 335.0
9 TraesCS1B01G244900 chr1D 96.757 185 4 2 742 925 321324851 321325034 8.540000e-80 307.0
10 TraesCS1B01G244900 chr1D 83.607 305 24 16 1791 2087 321330919 321331205 1.880000e-66 263.0
11 TraesCS1B01G244900 chr1D 90.909 77 7 0 2375 2451 419115043 419114967 1.200000e-18 104.0
12 TraesCS1B01G244900 chr1D 100.000 33 0 0 920 952 321330213 321330181 7.340000e-06 62.1
13 TraesCS1B01G244900 chr2D 88.128 716 68 13 776 1477 399347392 399348104 0.000000e+00 835.0
14 TraesCS1B01G244900 chr2D 89.820 167 17 0 2285 2451 152013748 152013582 5.330000e-52 215.0
15 TraesCS1B01G244900 chr4A 95.354 495 17 2 989 1477 23614514 23614020 0.000000e+00 782.0
16 TraesCS1B01G244900 chr4A 94.949 495 19 2 989 1477 23844020 23843526 0.000000e+00 771.0
17 TraesCS1B01G244900 chr4A 94.595 74 4 0 2375 2448 678379622 678379695 5.560000e-22 115.0
18 TraesCS1B01G244900 chr4B 93.269 416 24 3 1 414 522659026 522659439 5.810000e-171 610.0
19 TraesCS1B01G244900 chr4B 91.827 416 28 5 1 414 375124411 375124822 2.120000e-160 575.0
20 TraesCS1B01G244900 chr4B 91.169 419 32 3 1 417 109768075 109767660 4.590000e-157 564.0
21 TraesCS1B01G244900 chr6B 92.067 416 25 4 1 414 585487615 585488024 1.640000e-161 579.0
22 TraesCS1B01G244900 chr7B 91.807 415 30 3 1 413 245140271 245140683 2.120000e-160 575.0
23 TraesCS1B01G244900 chr5D 91.346 416 32 3 1 414 31973725 31974138 1.280000e-157 566.0
24 TraesCS1B01G244900 chr3D 91.346 416 32 3 1 414 140733972 140734385 1.280000e-157 566.0
25 TraesCS1B01G244900 chr3D 90.931 419 34 3 1 417 31268519 31268103 5.940000e-156 560.0
26 TraesCS1B01G244900 chr5B 91.872 406 29 3 11 414 404387167 404387570 4.590000e-157 564.0
27 TraesCS1B01G244900 chr3B 88.997 309 31 3 2144 2451 59964031 59963725 1.780000e-101 379.0
28 TraesCS1B01G244900 chr2B 89.634 164 15 1 2285 2448 528471261 528471422 8.910000e-50 207.0
29 TraesCS1B01G244900 chr7A 88.623 167 19 0 2285 2451 543305222 543305056 1.150000e-48 204.0
30 TraesCS1B01G244900 chr7A 87.195 164 21 0 2285 2448 690714608 690714771 1.160000e-43 187.0
31 TraesCS1B01G244900 chr3A 88.757 169 16 3 2285 2451 243090948 243090781 1.150000e-48 204.0
32 TraesCS1B01G244900 chr3A 88.095 168 18 2 2285 2451 743895770 743895604 5.360000e-47 198.0
33 TraesCS1B01G244900 chr5A 93.506 77 5 0 2375 2451 705227250 705227174 5.560000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G244900 chr1B 434334395 434336853 2458 False 4542.000000 4542 100.000 1 2459 1 chr1B.!!$F1 2458
1 TraesCS1B01G244900 chr1B 434429282 434430027 745 True 1171.000000 1171 95.582 742 1462 1 chr1B.!!$R2 720
2 TraesCS1B01G244900 chr1B 344375173 344375839 666 True 817.000000 817 89.004 803 1463 1 chr1B.!!$R1 660
3 TraesCS1B01G244900 chr1A 401226857 401227595 738 True 1103.000000 1103 94.062 742 1461 1 chr1A.!!$R1 719
4 TraesCS1B01G244900 chr1A 400955286 400956036 750 False 1077.000000 1077 93.218 742 1462 1 chr1A.!!$F1 720
5 TraesCS1B01G244900 chr1D 321710140 321710888 748 True 1070.000000 1070 93.067 742 1462 1 chr1D.!!$R2 720
6 TraesCS1B01G244900 chr1D 321330248 321331512 1264 False 463.666667 756 88.803 1171 2448 3 chr1D.!!$F2 1277
7 TraesCS1B01G244900 chr1D 321321873 321325034 3161 False 321.000000 335 91.829 414 925 2 chr1D.!!$F1 511
8 TraesCS1B01G244900 chr2D 399347392 399348104 712 False 835.000000 835 88.128 776 1477 1 chr2D.!!$F1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 730 0.03467 AGCTGCTCCTGTTCCCAATC 60.035 55.0 0.0 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 1934 0.040058 ACAGCAGGCAATCCATTGGA 59.96 50.0 8.08 8.08 38.21 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.607735 CATGGAAAAGTTTGATGCTTTTGT 57.392 33.333 7.62 0.00 43.60 2.83
24 25 7.018635 CATGGAAAAGTTTGATGCTTTTGTT 57.981 32.000 7.62 0.00 43.60 2.83
25 26 6.419980 TGGAAAAGTTTGATGCTTTTGTTG 57.580 33.333 7.62 0.00 43.60 3.33
26 27 6.169094 TGGAAAAGTTTGATGCTTTTGTTGA 58.831 32.000 7.62 0.00 43.60 3.18
27 28 6.822676 TGGAAAAGTTTGATGCTTTTGTTGAT 59.177 30.769 7.62 0.00 43.60 2.57
28 29 7.011295 TGGAAAAGTTTGATGCTTTTGTTGATC 59.989 33.333 7.62 0.00 43.60 2.92
29 30 6.849588 AAAGTTTGATGCTTTTGTTGATCC 57.150 33.333 0.00 0.00 32.86 3.36
30 31 5.796424 AGTTTGATGCTTTTGTTGATCCT 57.204 34.783 0.00 0.00 0.00 3.24
31 32 5.535333 AGTTTGATGCTTTTGTTGATCCTG 58.465 37.500 0.00 0.00 0.00 3.86
32 33 3.581024 TGATGCTTTTGTTGATCCTGC 57.419 42.857 0.00 0.00 0.00 4.85
33 34 3.159472 TGATGCTTTTGTTGATCCTGCT 58.841 40.909 0.00 0.00 0.00 4.24
34 35 3.057104 TGATGCTTTTGTTGATCCTGCTG 60.057 43.478 0.00 0.00 0.00 4.41
35 36 2.585330 TGCTTTTGTTGATCCTGCTGA 58.415 42.857 0.00 0.00 0.00 4.26
36 37 2.957680 TGCTTTTGTTGATCCTGCTGAA 59.042 40.909 0.00 0.00 0.00 3.02
37 38 3.005050 TGCTTTTGTTGATCCTGCTGAAG 59.995 43.478 0.00 0.00 0.00 3.02
38 39 3.254166 GCTTTTGTTGATCCTGCTGAAGA 59.746 43.478 0.00 0.00 0.00 2.87
39 40 4.615452 GCTTTTGTTGATCCTGCTGAAGAG 60.615 45.833 0.00 0.00 0.00 2.85
40 41 2.105006 TGTTGATCCTGCTGAAGAGC 57.895 50.000 0.00 0.00 46.44 4.09
41 42 1.339438 TGTTGATCCTGCTGAAGAGCC 60.339 52.381 0.00 0.00 45.57 4.70
42 43 0.986527 TTGATCCTGCTGAAGAGCCA 59.013 50.000 0.00 0.00 45.57 4.75
43 44 0.251354 TGATCCTGCTGAAGAGCCAC 59.749 55.000 0.00 0.00 45.57 5.01
44 45 0.463474 GATCCTGCTGAAGAGCCACC 60.463 60.000 0.00 0.00 45.57 4.61
45 46 0.913451 ATCCTGCTGAAGAGCCACCT 60.913 55.000 0.00 0.00 45.57 4.00
46 47 0.252239 TCCTGCTGAAGAGCCACCTA 60.252 55.000 0.00 0.00 45.57 3.08
47 48 0.835941 CCTGCTGAAGAGCCACCTAT 59.164 55.000 0.00 0.00 45.57 2.57
48 49 1.202627 CCTGCTGAAGAGCCACCTATC 60.203 57.143 0.00 0.00 45.57 2.08
49 50 1.761784 CTGCTGAAGAGCCACCTATCT 59.238 52.381 0.00 0.00 45.57 1.98
50 51 2.170187 CTGCTGAAGAGCCACCTATCTT 59.830 50.000 0.00 0.00 45.57 2.40
51 52 3.374764 TGCTGAAGAGCCACCTATCTTA 58.625 45.455 0.00 0.00 45.57 2.10
52 53 3.969976 TGCTGAAGAGCCACCTATCTTAT 59.030 43.478 0.00 0.00 45.57 1.73
53 54 5.147767 TGCTGAAGAGCCACCTATCTTATA 58.852 41.667 0.00 0.00 45.57 0.98
54 55 5.782331 TGCTGAAGAGCCACCTATCTTATAT 59.218 40.000 0.00 0.00 45.57 0.86
55 56 6.954102 TGCTGAAGAGCCACCTATCTTATATA 59.046 38.462 0.00 0.00 45.57 0.86
56 57 7.093727 TGCTGAAGAGCCACCTATCTTATATAC 60.094 40.741 0.00 0.00 45.57 1.47
57 58 7.123547 GCTGAAGAGCCACCTATCTTATATACT 59.876 40.741 0.00 0.00 39.57 2.12
58 59 9.688091 CTGAAGAGCCACCTATCTTATATACTA 57.312 37.037 0.00 0.00 35.93 1.82
78 79 3.034569 AAAAATTCGCATCGGCAGC 57.965 47.368 0.00 0.00 41.24 5.25
85 86 4.354155 GCATCGGCAGCGGTAATA 57.646 55.556 0.00 0.00 40.72 0.98
86 87 2.840974 GCATCGGCAGCGGTAATAT 58.159 52.632 0.00 0.00 40.72 1.28
87 88 1.156736 GCATCGGCAGCGGTAATATT 58.843 50.000 0.00 0.00 40.72 1.28
88 89 2.343101 GCATCGGCAGCGGTAATATTA 58.657 47.619 0.00 0.00 40.72 0.98
89 90 2.936498 GCATCGGCAGCGGTAATATTAT 59.064 45.455 0.00 0.00 40.72 1.28
90 91 3.374058 GCATCGGCAGCGGTAATATTATT 59.626 43.478 0.00 0.00 40.72 1.40
91 92 4.727734 GCATCGGCAGCGGTAATATTATTG 60.728 45.833 0.00 0.00 40.72 1.90
92 93 3.331150 TCGGCAGCGGTAATATTATTGG 58.669 45.455 0.00 0.00 0.00 3.16
93 94 3.007074 TCGGCAGCGGTAATATTATTGGA 59.993 43.478 0.00 0.00 0.00 3.53
94 95 3.749088 CGGCAGCGGTAATATTATTGGAA 59.251 43.478 0.00 0.00 0.00 3.53
95 96 4.214545 CGGCAGCGGTAATATTATTGGAAA 59.785 41.667 0.00 0.00 0.00 3.13
96 97 5.278071 CGGCAGCGGTAATATTATTGGAAAA 60.278 40.000 0.00 0.00 0.00 2.29
97 98 6.149633 GGCAGCGGTAATATTATTGGAAAAG 58.850 40.000 0.00 0.00 0.00 2.27
98 99 6.149633 GCAGCGGTAATATTATTGGAAAAGG 58.850 40.000 0.00 0.00 0.00 3.11
99 100 6.677913 CAGCGGTAATATTATTGGAAAAGGG 58.322 40.000 0.00 0.00 0.00 3.95
100 101 5.773176 AGCGGTAATATTATTGGAAAAGGGG 59.227 40.000 0.00 0.00 0.00 4.79
101 102 5.047590 GCGGTAATATTATTGGAAAAGGGGG 60.048 44.000 0.00 0.00 0.00 5.40
122 123 7.956328 GGGGGTTATTCAAGATTTCTTTACT 57.044 36.000 0.00 0.00 33.11 2.24
123 124 8.362464 GGGGGTTATTCAAGATTTCTTTACTT 57.638 34.615 0.00 0.00 33.11 2.24
124 125 8.251026 GGGGGTTATTCAAGATTTCTTTACTTG 58.749 37.037 0.00 0.00 41.27 3.16
125 126 8.803235 GGGGTTATTCAAGATTTCTTTACTTGT 58.197 33.333 0.00 0.00 40.89 3.16
126 127 9.626045 GGGTTATTCAAGATTTCTTTACTTGTG 57.374 33.333 0.00 0.00 40.89 3.33
131 132 8.506168 TTCAAGATTTCTTTACTTGTGTCAGT 57.494 30.769 0.00 0.00 40.89 3.41
132 133 7.919690 TCAAGATTTCTTTACTTGTGTCAGTG 58.080 34.615 0.00 0.00 40.89 3.66
133 134 6.305693 AGATTTCTTTACTTGTGTCAGTGC 57.694 37.500 0.00 0.00 0.00 4.40
134 135 6.058183 AGATTTCTTTACTTGTGTCAGTGCT 58.942 36.000 0.00 0.00 0.00 4.40
135 136 6.543831 AGATTTCTTTACTTGTGTCAGTGCTT 59.456 34.615 0.00 0.00 0.00 3.91
136 137 6.509418 TTTCTTTACTTGTGTCAGTGCTTT 57.491 33.333 0.00 0.00 0.00 3.51
137 138 7.618502 TTTCTTTACTTGTGTCAGTGCTTTA 57.381 32.000 0.00 0.00 0.00 1.85
138 139 6.598753 TCTTTACTTGTGTCAGTGCTTTAC 57.401 37.500 0.00 0.00 0.00 2.01
139 140 5.526111 TCTTTACTTGTGTCAGTGCTTTACC 59.474 40.000 0.00 0.00 0.00 2.85
140 141 2.572290 ACTTGTGTCAGTGCTTTACCC 58.428 47.619 0.00 0.00 0.00 3.69
141 142 1.531149 CTTGTGTCAGTGCTTTACCCG 59.469 52.381 0.00 0.00 0.00 5.28
142 143 0.882927 TGTGTCAGTGCTTTACCCGC 60.883 55.000 0.00 0.00 0.00 6.13
143 144 0.602905 GTGTCAGTGCTTTACCCGCT 60.603 55.000 0.00 0.00 0.00 5.52
144 145 0.970640 TGTCAGTGCTTTACCCGCTA 59.029 50.000 0.00 0.00 0.00 4.26
145 146 1.553248 TGTCAGTGCTTTACCCGCTAT 59.447 47.619 0.00 0.00 0.00 2.97
146 147 1.933853 GTCAGTGCTTTACCCGCTATG 59.066 52.381 0.00 0.00 0.00 2.23
147 148 1.134521 TCAGTGCTTTACCCGCTATGG 60.135 52.381 0.00 0.00 37.55 2.74
161 162 4.543590 CGCTATGGGTGGATCTATTCTT 57.456 45.455 0.00 0.00 0.00 2.52
162 163 4.499183 CGCTATGGGTGGATCTATTCTTC 58.501 47.826 0.00 0.00 0.00 2.87
163 164 4.021104 CGCTATGGGTGGATCTATTCTTCA 60.021 45.833 0.00 0.00 0.00 3.02
164 165 5.337894 CGCTATGGGTGGATCTATTCTTCAT 60.338 44.000 0.00 0.00 0.00 2.57
165 166 6.127338 CGCTATGGGTGGATCTATTCTTCATA 60.127 42.308 0.00 0.00 0.00 2.15
166 167 7.271511 GCTATGGGTGGATCTATTCTTCATAG 58.728 42.308 0.00 0.00 36.86 2.23
167 168 7.124901 GCTATGGGTGGATCTATTCTTCATAGA 59.875 40.741 0.00 0.00 46.65 1.98
168 169 7.878621 ATGGGTGGATCTATTCTTCATAGAA 57.121 36.000 0.00 0.00 45.88 2.10
169 170 7.067496 TGGGTGGATCTATTCTTCATAGAAC 57.933 40.000 0.00 0.00 45.88 3.01
170 171 6.846505 TGGGTGGATCTATTCTTCATAGAACT 59.153 38.462 0.00 0.00 45.88 3.01
171 172 8.010697 TGGGTGGATCTATTCTTCATAGAACTA 58.989 37.037 0.00 0.00 45.88 2.24
172 173 8.527810 GGGTGGATCTATTCTTCATAGAACTAG 58.472 40.741 0.00 0.00 45.88 2.57
173 174 9.084533 GGTGGATCTATTCTTCATAGAACTAGT 57.915 37.037 0.00 0.00 45.88 2.57
182 183 7.017498 TCTTCATAGAACTAGTAGTCTTGCG 57.983 40.000 2.58 0.00 0.00 4.85
183 184 5.752892 TCATAGAACTAGTAGTCTTGCGG 57.247 43.478 2.58 0.00 0.00 5.69
184 185 5.434408 TCATAGAACTAGTAGTCTTGCGGA 58.566 41.667 2.58 0.00 0.00 5.54
185 186 6.062749 TCATAGAACTAGTAGTCTTGCGGAT 58.937 40.000 2.58 0.00 0.00 4.18
186 187 4.640789 AGAACTAGTAGTCTTGCGGATG 57.359 45.455 2.58 0.00 0.00 3.51
187 188 2.873133 ACTAGTAGTCTTGCGGATGC 57.127 50.000 0.00 0.00 43.20 3.91
188 189 2.379972 ACTAGTAGTCTTGCGGATGCT 58.620 47.619 0.00 0.00 43.34 3.79
189 190 3.552875 ACTAGTAGTCTTGCGGATGCTA 58.447 45.455 0.00 0.00 43.34 3.49
190 191 4.145807 ACTAGTAGTCTTGCGGATGCTAT 58.854 43.478 0.00 0.00 43.34 2.97
191 192 5.314529 ACTAGTAGTCTTGCGGATGCTATA 58.685 41.667 0.00 0.00 43.34 1.31
192 193 5.946972 ACTAGTAGTCTTGCGGATGCTATAT 59.053 40.000 0.00 0.00 43.34 0.86
193 194 5.317733 AGTAGTCTTGCGGATGCTATATC 57.682 43.478 0.00 0.00 43.34 1.63
194 195 3.601443 AGTCTTGCGGATGCTATATCC 57.399 47.619 0.00 0.00 43.34 2.59
195 196 3.169099 AGTCTTGCGGATGCTATATCCT 58.831 45.455 4.59 0.00 43.34 3.24
196 197 3.580458 AGTCTTGCGGATGCTATATCCTT 59.420 43.478 4.59 0.00 43.34 3.36
197 198 3.681897 GTCTTGCGGATGCTATATCCTTG 59.318 47.826 4.59 0.00 43.34 3.61
198 199 3.324846 TCTTGCGGATGCTATATCCTTGT 59.675 43.478 4.59 0.00 43.34 3.16
199 200 3.769739 TGCGGATGCTATATCCTTGTT 57.230 42.857 4.59 0.00 43.34 2.83
200 201 4.085357 TGCGGATGCTATATCCTTGTTT 57.915 40.909 4.59 0.00 43.34 2.83
201 202 5.222079 TGCGGATGCTATATCCTTGTTTA 57.778 39.130 4.59 0.00 43.34 2.01
202 203 5.804639 TGCGGATGCTATATCCTTGTTTAT 58.195 37.500 4.59 0.00 43.34 1.40
203 204 6.941857 TGCGGATGCTATATCCTTGTTTATA 58.058 36.000 4.59 0.00 43.34 0.98
204 205 7.041721 TGCGGATGCTATATCCTTGTTTATAG 58.958 38.462 4.59 0.00 43.34 1.31
205 206 7.042335 GCGGATGCTATATCCTTGTTTATAGT 58.958 38.462 4.59 0.00 38.39 2.12
206 207 7.549488 GCGGATGCTATATCCTTGTTTATAGTT 59.451 37.037 4.59 0.00 38.39 2.24
207 208 8.873830 CGGATGCTATATCCTTGTTTATAGTTG 58.126 37.037 4.59 0.00 36.07 3.16
208 209 9.944376 GGATGCTATATCCTTGTTTATAGTTGA 57.056 33.333 0.00 0.00 35.36 3.18
218 219 9.621629 TCCTTGTTTATAGTTGAACTTGAAAGA 57.378 29.630 1.97 0.49 0.00 2.52
219 220 9.665264 CCTTGTTTATAGTTGAACTTGAAAGAC 57.335 33.333 1.97 0.00 0.00 3.01
228 229 8.579682 AGTTGAACTTGAAAGACAATTTATGC 57.420 30.769 0.00 0.00 37.88 3.14
229 230 8.196771 AGTTGAACTTGAAAGACAATTTATGCA 58.803 29.630 0.00 0.00 37.88 3.96
230 231 8.981647 GTTGAACTTGAAAGACAATTTATGCAT 58.018 29.630 3.79 3.79 37.88 3.96
234 235 8.638685 ACTTGAAAGACAATTTATGCATATGC 57.361 30.769 21.09 21.09 37.88 3.14
235 236 8.252417 ACTTGAAAGACAATTTATGCATATGCA 58.748 29.630 31.29 31.29 45.62 3.96
237 238 9.251792 TTGAAAGACAATTTATGCATATGCATC 57.748 29.630 39.26 26.38 44.63 3.91
259 260 8.319143 CATCCTTGCATTCAAAGAATTTTTCT 57.681 30.769 0.00 0.00 43.15 2.52
260 261 9.426837 CATCCTTGCATTCAAAGAATTTTTCTA 57.573 29.630 0.00 0.00 39.61 2.10
261 262 9.649167 ATCCTTGCATTCAAAGAATTTTTCTAG 57.351 29.630 0.00 0.00 39.61 2.43
262 263 8.859090 TCCTTGCATTCAAAGAATTTTTCTAGA 58.141 29.630 0.00 0.00 39.61 2.43
263 264 9.480053 CCTTGCATTCAAAGAATTTTTCTAGAA 57.520 29.630 0.00 0.00 39.61 2.10
286 287 9.813446 AGAATTTTCCAATATTGAGCATTCTTC 57.187 29.630 17.23 9.97 0.00 2.87
287 288 9.813446 GAATTTTCCAATATTGAGCATTCTTCT 57.187 29.630 17.23 0.00 0.00 2.85
288 289 9.595823 AATTTTCCAATATTGAGCATTCTTCTG 57.404 29.630 17.23 0.00 0.00 3.02
289 290 7.707624 TTTCCAATATTGAGCATTCTTCTGT 57.292 32.000 17.23 0.00 0.00 3.41
290 291 7.707624 TTCCAATATTGAGCATTCTTCTGTT 57.292 32.000 17.23 0.00 0.00 3.16
291 292 8.806429 TTCCAATATTGAGCATTCTTCTGTTA 57.194 30.769 17.23 0.00 0.00 2.41
292 293 8.806429 TCCAATATTGAGCATTCTTCTGTTAA 57.194 30.769 17.23 0.00 0.00 2.01
293 294 8.896744 TCCAATATTGAGCATTCTTCTGTTAAG 58.103 33.333 17.23 0.00 0.00 1.85
294 295 7.646922 CCAATATTGAGCATTCTTCTGTTAAGC 59.353 37.037 17.23 0.00 0.00 3.09
295 296 8.404000 CAATATTGAGCATTCTTCTGTTAAGCT 58.596 33.333 10.04 0.00 0.00 3.74
296 297 6.830873 ATTGAGCATTCTTCTGTTAAGCTT 57.169 33.333 3.48 3.48 0.00 3.74
297 298 5.618056 TGAGCATTCTTCTGTTAAGCTTG 57.382 39.130 9.86 0.00 0.00 4.01
298 299 4.083110 TGAGCATTCTTCTGTTAAGCTTGC 60.083 41.667 9.86 0.00 0.00 4.01
299 300 3.822735 AGCATTCTTCTGTTAAGCTTGCA 59.177 39.130 9.86 7.28 31.63 4.08
300 301 4.082895 AGCATTCTTCTGTTAAGCTTGCAG 60.083 41.667 20.24 20.24 31.63 4.41
301 302 3.904136 TTCTTCTGTTAAGCTTGCAGC 57.096 42.857 21.02 2.70 42.84 5.25
371 372 6.664428 AAAAATTTGTGTGCACTATAGGGT 57.336 33.333 19.41 0.00 0.00 4.34
372 373 5.643379 AAATTTGTGTGCACTATAGGGTG 57.357 39.130 19.41 0.00 39.91 4.61
373 374 2.779755 TTGTGTGCACTATAGGGTGG 57.220 50.000 19.41 0.00 37.65 4.61
374 375 1.945580 TGTGTGCACTATAGGGTGGA 58.054 50.000 19.41 0.00 37.65 4.02
376 377 3.661745 GTGCACTATAGGGTGGACG 57.338 57.895 10.32 0.00 45.40 4.79
377 378 0.529992 GTGCACTATAGGGTGGACGC 60.530 60.000 10.32 0.00 45.40 5.19
378 379 0.686441 TGCACTATAGGGTGGACGCT 60.686 55.000 3.43 1.65 42.15 5.07
379 380 0.249489 GCACTATAGGGTGGACGCTG 60.249 60.000 3.43 0.00 39.60 5.18
380 381 0.389391 CACTATAGGGTGGACGCTGG 59.611 60.000 4.43 0.56 39.60 4.85
381 382 1.367840 CTATAGGGTGGACGCTGGC 59.632 63.158 6.61 0.00 39.60 4.85
382 383 2.100879 CTATAGGGTGGACGCTGGCC 62.101 65.000 6.61 0.00 39.60 5.36
383 384 2.882403 TATAGGGTGGACGCTGGCCA 62.882 60.000 4.71 4.71 39.60 5.36
387 388 4.101448 GTGGACGCTGGCCATCCT 62.101 66.667 21.77 1.53 37.81 3.24
388 389 3.785859 TGGACGCTGGCCATCCTC 61.786 66.667 21.77 10.63 33.34 3.71
389 390 4.554036 GGACGCTGGCCATCCTCC 62.554 72.222 15.51 12.02 0.00 4.30
390 391 4.554036 GACGCTGGCCATCCTCCC 62.554 72.222 5.51 0.00 0.00 4.30
392 393 3.882326 CGCTGGCCATCCTCCCAT 61.882 66.667 5.51 0.00 0.00 4.00
393 394 2.519622 CGCTGGCCATCCTCCCATA 61.520 63.158 5.51 0.00 0.00 2.74
394 395 1.073897 GCTGGCCATCCTCCCATAC 59.926 63.158 5.51 0.00 0.00 2.39
395 396 1.708993 GCTGGCCATCCTCCCATACA 61.709 60.000 5.51 0.00 0.00 2.29
396 397 0.399454 CTGGCCATCCTCCCATACAG 59.601 60.000 5.51 0.00 0.00 2.74
397 398 1.061905 TGGCCATCCTCCCATACAGG 61.062 60.000 0.00 0.00 37.03 4.00
398 399 1.073897 GCCATCCTCCCATACAGGC 59.926 63.158 0.00 0.00 35.39 4.85
399 400 1.708993 GCCATCCTCCCATACAGGCA 61.709 60.000 0.00 0.00 40.29 4.75
400 401 0.846015 CCATCCTCCCATACAGGCAA 59.154 55.000 0.00 0.00 35.39 4.52
401 402 1.426598 CCATCCTCCCATACAGGCAAT 59.573 52.381 0.00 0.00 35.39 3.56
402 403 2.553904 CCATCCTCCCATACAGGCAATC 60.554 54.545 0.00 0.00 35.39 2.67
403 404 1.140312 TCCTCCCATACAGGCAATCC 58.860 55.000 0.00 0.00 35.39 3.01
404 405 1.143813 CCTCCCATACAGGCAATCCT 58.856 55.000 0.00 0.00 45.66 3.24
405 406 1.072965 CCTCCCATACAGGCAATCCTC 59.927 57.143 0.00 0.00 41.93 3.71
406 407 2.053244 CTCCCATACAGGCAATCCTCT 58.947 52.381 0.00 0.00 41.93 3.69
407 408 2.441001 CTCCCATACAGGCAATCCTCTT 59.559 50.000 0.00 0.00 41.93 2.85
408 409 2.439507 TCCCATACAGGCAATCCTCTTC 59.560 50.000 0.00 0.00 41.93 2.87
409 410 2.487934 CCATACAGGCAATCCTCTTCG 58.512 52.381 0.00 0.00 41.93 3.79
410 411 2.103094 CCATACAGGCAATCCTCTTCGA 59.897 50.000 0.00 0.00 41.93 3.71
411 412 3.244353 CCATACAGGCAATCCTCTTCGAT 60.244 47.826 0.00 0.00 41.93 3.59
412 413 2.611225 ACAGGCAATCCTCTTCGATC 57.389 50.000 0.00 0.00 41.93 3.69
413 414 1.833630 ACAGGCAATCCTCTTCGATCA 59.166 47.619 0.00 0.00 41.93 2.92
414 415 2.158986 ACAGGCAATCCTCTTCGATCAG 60.159 50.000 0.00 0.00 41.93 2.90
415 416 1.415659 AGGCAATCCTCTTCGATCAGG 59.584 52.381 4.10 4.10 38.72 3.86
440 441 1.005037 GATCGGCCGCATGACCATA 60.005 57.895 23.51 0.00 0.00 2.74
442 443 0.884704 ATCGGCCGCATGACCATAAC 60.885 55.000 23.51 0.00 0.00 1.89
462 464 4.608948 ACCAAGGCCTTAAGAGATATCG 57.391 45.455 20.00 0.95 0.00 2.92
466 468 4.608948 AGGCCTTAAGAGATATCGTTGG 57.391 45.455 0.00 0.00 0.00 3.77
484 486 1.362237 TGGAGATCCCCTTGGCATTTT 59.638 47.619 0.00 0.00 34.29 1.82
506 508 7.565323 TTTTTCCCCATCTTTGACATTTTTG 57.435 32.000 0.00 0.00 0.00 2.44
544 547 7.249858 GCAGACCAATCAAATGTTTTGTTTTT 58.750 30.769 0.39 0.00 0.00 1.94
571 574 8.321650 ACAAAATTTCTTCAAAACACACACAT 57.678 26.923 0.00 0.00 0.00 3.21
573 576 5.971895 ATTTCTTCAAAACACACACATGC 57.028 34.783 0.00 0.00 0.00 4.06
575 578 4.652421 TCTTCAAAACACACACATGCAT 57.348 36.364 0.00 0.00 0.00 3.96
576 579 4.609947 TCTTCAAAACACACACATGCATC 58.390 39.130 0.00 0.00 0.00 3.91
585 588 2.224079 ACACACATGCATCGACAGTTTC 59.776 45.455 0.00 0.00 0.00 2.78
587 590 1.131126 CACATGCATCGACAGTTTCCC 59.869 52.381 0.00 0.00 0.00 3.97
663 667 1.226831 CGCACCACCAAACAACCAC 60.227 57.895 0.00 0.00 0.00 4.16
664 668 1.226831 GCACCACCAAACAACCACG 60.227 57.895 0.00 0.00 0.00 4.94
665 669 1.658686 GCACCACCAAACAACCACGA 61.659 55.000 0.00 0.00 0.00 4.35
666 670 0.811915 CACCACCAAACAACCACGAA 59.188 50.000 0.00 0.00 0.00 3.85
667 671 1.202582 CACCACCAAACAACCACGAAA 59.797 47.619 0.00 0.00 0.00 3.46
668 672 2.104170 ACCACCAAACAACCACGAAAT 58.896 42.857 0.00 0.00 0.00 2.17
669 673 3.066900 CACCACCAAACAACCACGAAATA 59.933 43.478 0.00 0.00 0.00 1.40
670 674 3.067040 ACCACCAAACAACCACGAAATAC 59.933 43.478 0.00 0.00 0.00 1.89
671 675 3.066900 CCACCAAACAACCACGAAATACA 59.933 43.478 0.00 0.00 0.00 2.29
672 676 4.440250 CCACCAAACAACCACGAAATACAA 60.440 41.667 0.00 0.00 0.00 2.41
673 677 4.501198 CACCAAACAACCACGAAATACAAC 59.499 41.667 0.00 0.00 0.00 3.32
674 678 4.045783 CCAAACAACCACGAAATACAACC 58.954 43.478 0.00 0.00 0.00 3.77
675 679 3.612472 AACAACCACGAAATACAACCG 57.388 42.857 0.00 0.00 0.00 4.44
676 680 1.264826 ACAACCACGAAATACAACCGC 59.735 47.619 0.00 0.00 0.00 5.68
704 708 7.056002 ACGAAAAACCAAACTTCATGAAAAC 57.944 32.000 9.88 0.00 0.00 2.43
717 721 1.229428 TGAAAACGAAGCTGCTCCTG 58.771 50.000 1.00 0.00 0.00 3.86
719 723 1.604278 GAAAACGAAGCTGCTCCTGTT 59.396 47.619 1.00 5.47 0.00 3.16
720 724 1.230324 AAACGAAGCTGCTCCTGTTC 58.770 50.000 1.00 0.00 0.00 3.18
721 725 0.603975 AACGAAGCTGCTCCTGTTCC 60.604 55.000 1.00 0.00 0.00 3.62
722 726 1.743252 CGAAGCTGCTCCTGTTCCC 60.743 63.158 1.00 0.00 0.00 3.97
723 727 1.376466 GAAGCTGCTCCTGTTCCCA 59.624 57.895 1.00 0.00 0.00 4.37
724 728 0.250901 GAAGCTGCTCCTGTTCCCAA 60.251 55.000 1.00 0.00 0.00 4.12
725 729 0.407139 AAGCTGCTCCTGTTCCCAAT 59.593 50.000 1.00 0.00 0.00 3.16
726 730 0.034670 AGCTGCTCCTGTTCCCAATC 60.035 55.000 0.00 0.00 0.00 2.67
727 731 0.034670 GCTGCTCCTGTTCCCAATCT 60.035 55.000 0.00 0.00 0.00 2.40
728 732 1.210478 GCTGCTCCTGTTCCCAATCTA 59.790 52.381 0.00 0.00 0.00 1.98
729 733 2.356125 GCTGCTCCTGTTCCCAATCTAA 60.356 50.000 0.00 0.00 0.00 2.10
730 734 3.873801 GCTGCTCCTGTTCCCAATCTAAA 60.874 47.826 0.00 0.00 0.00 1.85
731 735 4.335416 CTGCTCCTGTTCCCAATCTAAAA 58.665 43.478 0.00 0.00 0.00 1.52
732 736 4.735369 TGCTCCTGTTCCCAATCTAAAAA 58.265 39.130 0.00 0.00 0.00 1.94
1491 1534 5.163499 GCCTGTATCTGCAACTAGAAGTAGT 60.163 44.000 0.00 0.00 41.61 2.73
1511 1554 3.009033 AGTGTTAGTGCTGGCTGGAAATA 59.991 43.478 0.00 0.00 0.00 1.40
1513 1556 3.009033 TGTTAGTGCTGGCTGGAAATAGT 59.991 43.478 0.00 0.00 0.00 2.12
1518 1561 3.255642 GTGCTGGCTGGAAATAGTTGAAA 59.744 43.478 0.00 0.00 0.00 2.69
1520 1563 3.674410 GCTGGCTGGAAATAGTTGAAAGC 60.674 47.826 0.00 0.00 0.00 3.51
1525 1568 4.488879 CTGGAAATAGTTGAAAGCTTGCC 58.511 43.478 0.00 0.00 0.00 4.52
1546 1589 1.317613 ATGCTTTGTTGGCTCGTTGA 58.682 45.000 0.00 0.00 0.00 3.18
1554 1597 2.811431 TGTTGGCTCGTTGATTGTAAGG 59.189 45.455 0.00 0.00 0.00 2.69
1555 1598 2.107950 TGGCTCGTTGATTGTAAGGG 57.892 50.000 0.00 0.00 0.00 3.95
1563 1606 5.074115 TCGTTGATTGTAAGGGGTGAATTT 58.926 37.500 0.00 0.00 0.00 1.82
1564 1607 5.048364 TCGTTGATTGTAAGGGGTGAATTTG 60.048 40.000 0.00 0.00 0.00 2.32
1599 1642 7.932335 TGGCAAACTAAGAATTCGAAAGTAAA 58.068 30.769 0.00 0.00 0.00 2.01
1601 1644 8.688184 GGCAAACTAAGAATTCGAAAGTAAAAC 58.312 33.333 0.00 0.00 0.00 2.43
1616 1659 7.201182 CGAAAGTAAAACGATTCATTTCTGCTG 60.201 37.037 0.00 0.00 0.00 4.41
1618 1661 4.510038 AAAACGATTCATTTCTGCTGCT 57.490 36.364 0.00 0.00 0.00 4.24
1625 1668 1.733912 TCATTTCTGCTGCTGCGTTAG 59.266 47.619 11.21 3.17 43.34 2.34
1642 1685 6.103330 TGCGTTAGTAATTTCTGCTGTGATA 58.897 36.000 0.00 0.00 0.00 2.15
1645 1688 7.567571 CGTTAGTAATTTCTGCTGTGATATGG 58.432 38.462 0.00 0.00 0.00 2.74
1652 1695 6.494893 TTTCTGCTGTGATATGGTTGTTAC 57.505 37.500 0.00 0.00 0.00 2.50
1658 1701 6.381707 TGCTGTGATATGGTTGTTACTAGGTA 59.618 38.462 0.00 0.00 0.00 3.08
1660 1703 6.812998 TGTGATATGGTTGTTACTAGGTAGC 58.187 40.000 0.00 0.00 0.00 3.58
1661 1704 6.183360 TGTGATATGGTTGTTACTAGGTAGCC 60.183 42.308 0.00 0.00 0.00 3.93
1663 1706 2.528564 TGGTTGTTACTAGGTAGCCGT 58.471 47.619 0.00 0.00 0.00 5.68
1666 1709 3.696548 GGTTGTTACTAGGTAGCCGTACT 59.303 47.826 0.00 0.00 0.00 2.73
1667 1710 4.439289 GGTTGTTACTAGGTAGCCGTACTG 60.439 50.000 0.00 0.00 0.00 2.74
1678 1721 1.341531 AGCCGTACTGATCTGCCATAC 59.658 52.381 0.00 0.00 0.00 2.39
1679 1722 1.068588 GCCGTACTGATCTGCCATACA 59.931 52.381 0.00 0.00 0.00 2.29
1680 1723 2.483013 GCCGTACTGATCTGCCATACAA 60.483 50.000 0.00 0.00 0.00 2.41
1681 1724 3.803715 GCCGTACTGATCTGCCATACAAT 60.804 47.826 0.00 0.00 0.00 2.71
1682 1725 3.990469 CCGTACTGATCTGCCATACAATC 59.010 47.826 0.00 0.00 0.00 2.67
1683 1726 4.501400 CCGTACTGATCTGCCATACAATCA 60.501 45.833 0.00 0.00 0.00 2.57
1684 1727 5.233225 CGTACTGATCTGCCATACAATCAT 58.767 41.667 0.00 0.00 30.56 2.45
1685 1728 5.119743 CGTACTGATCTGCCATACAATCATG 59.880 44.000 0.00 0.00 30.56 3.07
1686 1729 3.819337 ACTGATCTGCCATACAATCATGC 59.181 43.478 0.00 0.00 30.56 4.06
1687 1730 4.072839 CTGATCTGCCATACAATCATGCT 58.927 43.478 0.00 0.00 30.56 3.79
1688 1731 4.466827 TGATCTGCCATACAATCATGCTT 58.533 39.130 0.00 0.00 0.00 3.91
1689 1732 4.891168 TGATCTGCCATACAATCATGCTTT 59.109 37.500 0.00 0.00 0.00 3.51
1690 1733 5.361571 TGATCTGCCATACAATCATGCTTTT 59.638 36.000 0.00 0.00 0.00 2.27
1691 1734 5.001237 TCTGCCATACAATCATGCTTTTG 57.999 39.130 0.00 0.00 0.00 2.44
1692 1735 4.463539 TCTGCCATACAATCATGCTTTTGT 59.536 37.500 11.52 11.52 39.32 2.83
1693 1736 5.651576 TCTGCCATACAATCATGCTTTTGTA 59.348 36.000 14.15 14.15 41.21 2.41
1694 1737 5.893687 TGCCATACAATCATGCTTTTGTAG 58.106 37.500 15.89 8.59 40.53 2.74
1714 1757 5.709631 TGTAGCAGTGCAAATTTCCAGATTA 59.290 36.000 19.20 0.00 0.00 1.75
1715 1758 5.927281 AGCAGTGCAAATTTCCAGATTAT 57.073 34.783 19.20 0.00 0.00 1.28
1717 1760 6.335777 AGCAGTGCAAATTTCCAGATTATTC 58.664 36.000 19.20 0.00 0.00 1.75
1719 1762 6.759827 GCAGTGCAAATTTCCAGATTATTCAT 59.240 34.615 11.09 0.00 0.00 2.57
1720 1763 7.279313 GCAGTGCAAATTTCCAGATTATTCATT 59.721 33.333 11.09 0.00 0.00 2.57
1723 1766 8.938906 GTGCAAATTTCCAGATTATTCATTTGT 58.061 29.630 0.00 0.00 34.20 2.83
1725 1768 9.763465 GCAAATTTCCAGATTATTCATTTGTTG 57.237 29.630 0.00 0.00 34.20 3.33
1730 1773 9.695526 TTTCCAGATTATTCATTTGTTGACAAG 57.304 29.630 0.00 0.00 37.15 3.16
1731 1774 8.408043 TCCAGATTATTCATTTGTTGACAAGT 57.592 30.769 0.00 0.00 37.15 3.16
1732 1775 9.513906 TCCAGATTATTCATTTGTTGACAAGTA 57.486 29.630 0.00 0.00 37.15 2.24
1733 1776 9.778993 CCAGATTATTCATTTGTTGACAAGTAG 57.221 33.333 0.00 0.00 37.15 2.57
1740 1849 5.880332 TCATTTGTTGACAAGTAGATAGGCC 59.120 40.000 0.00 0.00 37.15 5.19
1741 1850 3.520290 TGTTGACAAGTAGATAGGCCG 57.480 47.619 0.00 0.00 0.00 6.13
1752 1861 4.657039 AGTAGATAGGCCGGGTTTAATTGA 59.343 41.667 2.18 0.00 0.00 2.57
1760 1869 4.322424 GGCCGGGTTTAATTGAATTCTGTT 60.322 41.667 2.18 4.28 0.00 3.16
1761 1870 4.862574 GCCGGGTTTAATTGAATTCTGTTC 59.137 41.667 2.18 0.00 0.00 3.18
1762 1871 5.336451 GCCGGGTTTAATTGAATTCTGTTCT 60.336 40.000 2.18 0.00 0.00 3.01
1765 1874 7.145323 CGGGTTTAATTGAATTCTGTTCTTGT 58.855 34.615 7.05 0.00 0.00 3.16
1766 1875 7.651704 CGGGTTTAATTGAATTCTGTTCTTGTT 59.348 33.333 7.05 0.00 0.00 2.83
1771 1880 9.748708 TTAATTGAATTCTGTTCTTGTTTCCAG 57.251 29.630 7.05 0.00 0.00 3.86
1772 1881 7.587037 ATTGAATTCTGTTCTTGTTTCCAGA 57.413 32.000 7.05 0.00 32.38 3.86
1773 1882 6.624352 TGAATTCTGTTCTTGTTTCCAGAG 57.376 37.500 7.05 0.00 35.54 3.35
1774 1883 6.122277 TGAATTCTGTTCTTGTTTCCAGAGT 58.878 36.000 7.05 0.00 35.54 3.24
1775 1884 7.279615 TGAATTCTGTTCTTGTTTCCAGAGTA 58.720 34.615 7.05 0.00 35.54 2.59
1776 1885 7.939039 TGAATTCTGTTCTTGTTTCCAGAGTAT 59.061 33.333 7.05 0.00 35.54 2.12
1777 1886 7.913674 ATTCTGTTCTTGTTTCCAGAGTATC 57.086 36.000 0.00 0.00 35.54 2.24
1778 1887 6.419484 TCTGTTCTTGTTTCCAGAGTATCA 57.581 37.500 0.00 0.00 37.82 2.15
1779 1888 6.459066 TCTGTTCTTGTTTCCAGAGTATCAG 58.541 40.000 0.00 0.00 37.82 2.90
1780 1889 6.267699 TCTGTTCTTGTTTCCAGAGTATCAGA 59.732 38.462 0.00 0.00 37.82 3.27
1782 1891 5.060662 TCTTGTTTCCAGAGTATCAGACG 57.939 43.478 0.00 0.00 37.82 4.18
1784 1893 3.427573 TGTTTCCAGAGTATCAGACGGA 58.572 45.455 0.00 0.00 37.82 4.69
1787 1896 2.587522 TCCAGAGTATCAGACGGATGG 58.412 52.381 0.00 0.00 37.82 3.51
1789 1898 1.000283 CAGAGTATCAGACGGATGGGC 60.000 57.143 0.00 0.00 37.82 5.36
1818 1934 5.477984 TGTTGCAAGGAAGAATAAGAGCAAT 59.522 36.000 0.00 0.00 41.90 3.56
1819 1935 5.824904 TGCAAGGAAGAATAAGAGCAATC 57.175 39.130 0.00 0.00 0.00 2.67
1826 1942 5.829924 GGAAGAATAAGAGCAATCCAATGGA 59.170 40.000 3.67 3.67 35.55 3.41
1843 1959 2.318908 TGGATTGCCTGCTGTTTCTTT 58.681 42.857 0.00 0.00 34.31 2.52
1865 1981 9.849166 TCTTTTTCTTGTTTTGGTAGTTGTTAG 57.151 29.630 0.00 0.00 0.00 2.34
1871 1987 4.395542 TGTTTTGGTAGTTGTTAGCGTTGT 59.604 37.500 0.00 0.00 32.34 3.32
1877 1993 6.225318 TGGTAGTTGTTAGCGTTGTTTATCT 58.775 36.000 0.00 0.00 32.34 1.98
1891 2007 6.483687 GTTGTTTATCTAGCCGTACCAATTG 58.516 40.000 0.00 0.00 0.00 2.32
1894 2010 6.655848 TGTTTATCTAGCCGTACCAATTGTTT 59.344 34.615 4.43 0.00 0.00 2.83
1895 2011 7.823310 TGTTTATCTAGCCGTACCAATTGTTTA 59.177 33.333 4.43 0.00 0.00 2.01
1896 2012 8.833493 GTTTATCTAGCCGTACCAATTGTTTAT 58.167 33.333 4.43 0.00 0.00 1.40
1897 2013 8.597662 TTATCTAGCCGTACCAATTGTTTATC 57.402 34.615 4.43 0.00 0.00 1.75
1898 2014 5.979993 TCTAGCCGTACCAATTGTTTATCA 58.020 37.500 4.43 0.00 0.00 2.15
1899 2015 6.046593 TCTAGCCGTACCAATTGTTTATCAG 58.953 40.000 4.43 0.00 0.00 2.90
1900 2016 4.585879 AGCCGTACCAATTGTTTATCAGT 58.414 39.130 4.43 0.00 0.00 3.41
1901 2017 5.007682 AGCCGTACCAATTGTTTATCAGTT 58.992 37.500 4.43 0.00 0.00 3.16
1903 2019 6.655848 AGCCGTACCAATTGTTTATCAGTTAA 59.344 34.615 4.43 0.00 0.00 2.01
1904 2020 7.175293 AGCCGTACCAATTGTTTATCAGTTAAA 59.825 33.333 4.43 0.00 0.00 1.52
1905 2021 7.971722 GCCGTACCAATTGTTTATCAGTTAAAT 59.028 33.333 4.43 0.00 32.56 1.40
1906 2022 9.849166 CCGTACCAATTGTTTATCAGTTAAATT 57.151 29.630 4.43 0.00 32.56 1.82
1931 2047 1.654954 GCTGGAGCTGCCTGATGTTG 61.655 60.000 1.53 0.00 37.79 3.33
1939 2055 2.366533 CTGCCTGATGTTGCTCTGAAT 58.633 47.619 0.00 0.00 0.00 2.57
1944 2060 4.024218 GCCTGATGTTGCTCTGAATATGTC 60.024 45.833 0.00 0.00 0.00 3.06
1951 2067 5.179929 TGTTGCTCTGAATATGTCAAGTGTG 59.820 40.000 0.00 0.00 35.22 3.82
1994 2110 3.078837 GGCGGTCCTTAAACAAGATGAA 58.921 45.455 0.00 0.00 0.00 2.57
1995 2111 3.504520 GGCGGTCCTTAAACAAGATGAAA 59.495 43.478 0.00 0.00 0.00 2.69
1997 2113 5.336451 GGCGGTCCTTAAACAAGATGAAATT 60.336 40.000 0.00 0.00 0.00 1.82
1998 2114 5.800438 GCGGTCCTTAAACAAGATGAAATTC 59.200 40.000 0.00 0.00 0.00 2.17
1999 2115 6.349363 GCGGTCCTTAAACAAGATGAAATTCT 60.349 38.462 0.00 0.00 0.00 2.40
2000 2116 7.148306 GCGGTCCTTAAACAAGATGAAATTCTA 60.148 37.037 0.00 0.00 0.00 2.10
2001 2117 8.726988 CGGTCCTTAAACAAGATGAAATTCTAA 58.273 33.333 0.00 0.00 0.00 2.10
2009 2125 8.922058 AACAAGATGAAATTCTAATGACATGC 57.078 30.769 0.00 0.00 0.00 4.06
2010 2126 8.289939 ACAAGATGAAATTCTAATGACATGCT 57.710 30.769 0.00 0.00 0.00 3.79
2011 2127 9.399797 ACAAGATGAAATTCTAATGACATGCTA 57.600 29.630 0.00 0.00 0.00 3.49
2062 2186 2.464682 CAGTGGCTGTAGCTTCTGC 58.535 57.895 12.83 12.83 41.70 4.26
2067 2191 1.451028 GCTGTAGCTTCTGCCCTGG 60.451 63.158 10.53 0.00 40.80 4.45
2073 2197 2.182516 AGCTTCTGCCCTGGTAGTAT 57.817 50.000 1.08 0.00 40.80 2.12
2087 2211 6.273825 CCTGGTAGTATCATGTACTCAACAC 58.726 44.000 10.12 5.09 42.09 3.32
2094 2218 7.372714 AGTATCATGTACTCAACACAACGTTA 58.627 34.615 0.00 0.00 42.09 3.18
2095 2219 7.868922 AGTATCATGTACTCAACACAACGTTAA 59.131 33.333 0.00 0.00 42.09 2.01
2096 2220 6.276611 TCATGTACTCAACACAACGTTAAC 57.723 37.500 0.00 0.00 42.09 2.01
2098 2222 7.201835 TCATGTACTCAACACAACGTTAACTA 58.798 34.615 0.00 0.00 42.09 2.24
2099 2223 7.868922 TCATGTACTCAACACAACGTTAACTAT 59.131 33.333 0.00 0.00 42.09 2.12
2101 2225 7.428020 TGTACTCAACACAACGTTAACTATCT 58.572 34.615 0.00 0.00 35.52 1.98
2102 2226 6.764877 ACTCAACACAACGTTAACTATCTG 57.235 37.500 0.00 0.00 35.52 2.90
2103 2227 5.176958 ACTCAACACAACGTTAACTATCTGC 59.823 40.000 0.00 0.00 35.52 4.26
2104 2228 5.051153 TCAACACAACGTTAACTATCTGCA 58.949 37.500 0.00 0.00 35.52 4.41
2107 2231 4.994852 ACACAACGTTAACTATCTGCACAT 59.005 37.500 0.00 0.00 0.00 3.21
2108 2232 6.160684 ACACAACGTTAACTATCTGCACATA 58.839 36.000 0.00 0.00 0.00 2.29
2109 2233 6.647481 ACACAACGTTAACTATCTGCACATAA 59.353 34.615 0.00 0.00 0.00 1.90
2110 2234 7.171848 ACACAACGTTAACTATCTGCACATAAA 59.828 33.333 0.00 0.00 0.00 1.40
2111 2235 8.175069 CACAACGTTAACTATCTGCACATAAAT 58.825 33.333 0.00 0.00 0.00 1.40
2115 2239 9.109393 ACGTTAACTATCTGCACATAAATTGAT 57.891 29.630 3.71 0.00 0.00 2.57
2118 2242 9.625747 TTAACTATCTGCACATAAATTGATGGA 57.374 29.630 7.72 0.00 0.00 3.41
2119 2243 8.701908 AACTATCTGCACATAAATTGATGGAT 57.298 30.769 7.72 3.23 0.00 3.41
2120 2244 8.701908 ACTATCTGCACATAAATTGATGGATT 57.298 30.769 7.72 0.00 0.00 3.01
2121 2245 8.573885 ACTATCTGCACATAAATTGATGGATTG 58.426 33.333 7.72 4.33 0.00 2.67
2122 2246 7.591421 ATCTGCACATAAATTGATGGATTGA 57.409 32.000 7.72 1.45 0.00 2.57
2123 2247 7.591421 TCTGCACATAAATTGATGGATTGAT 57.409 32.000 7.72 0.00 0.00 2.57
2124 2248 8.694581 TCTGCACATAAATTGATGGATTGATA 57.305 30.769 7.72 0.00 0.00 2.15
2125 2249 9.134055 TCTGCACATAAATTGATGGATTGATAA 57.866 29.630 7.72 0.00 0.00 1.75
2126 2250 9.188588 CTGCACATAAATTGATGGATTGATAAC 57.811 33.333 7.72 0.00 0.00 1.89
2127 2251 8.916062 TGCACATAAATTGATGGATTGATAACT 58.084 29.630 7.72 0.00 0.00 2.24
2128 2252 9.754382 GCACATAAATTGATGGATTGATAACTT 57.246 29.630 7.72 0.00 0.00 2.66
2134 2258 8.812513 AATTGATGGATTGATAACTTCTGTGA 57.187 30.769 0.00 0.00 0.00 3.58
2135 2259 7.615582 TTGATGGATTGATAACTTCTGTGAC 57.384 36.000 0.00 0.00 0.00 3.67
2136 2260 6.115446 TGATGGATTGATAACTTCTGTGACC 58.885 40.000 0.00 0.00 0.00 4.02
2137 2261 5.762179 TGGATTGATAACTTCTGTGACCT 57.238 39.130 0.00 0.00 0.00 3.85
2138 2262 6.867519 TGGATTGATAACTTCTGTGACCTA 57.132 37.500 0.00 0.00 0.00 3.08
2140 2264 6.440647 TGGATTGATAACTTCTGTGACCTAGT 59.559 38.462 0.00 0.00 0.00 2.57
2141 2265 7.038302 TGGATTGATAACTTCTGTGACCTAGTT 60.038 37.037 0.00 0.00 35.25 2.24
2142 2266 7.278868 GGATTGATAACTTCTGTGACCTAGTTG 59.721 40.741 0.00 0.00 33.28 3.16
2143 2267 5.479306 TGATAACTTCTGTGACCTAGTTGC 58.521 41.667 0.00 0.00 33.28 4.17
2145 2269 2.047061 ACTTCTGTGACCTAGTTGCCA 58.953 47.619 0.00 0.00 0.00 4.92
2146 2270 2.639839 ACTTCTGTGACCTAGTTGCCAT 59.360 45.455 0.00 0.00 0.00 4.40
2147 2271 2.768253 TCTGTGACCTAGTTGCCATG 57.232 50.000 0.00 0.00 0.00 3.66
2148 2272 1.278985 TCTGTGACCTAGTTGCCATGG 59.721 52.381 7.63 7.63 0.00 3.66
2149 2273 1.003580 CTGTGACCTAGTTGCCATGGT 59.996 52.381 14.67 0.00 35.23 3.55
2150 2274 2.236146 CTGTGACCTAGTTGCCATGGTA 59.764 50.000 14.67 5.86 32.30 3.25
2184 2308 9.547753 GTATAGTGTTGGATTTGTGATATCTGT 57.452 33.333 3.98 0.00 0.00 3.41
2194 2318 2.036346 TGTGATATCTGTGGCGATCAGG 59.964 50.000 3.98 0.00 34.15 3.86
2208 2355 0.250640 ATCAGGATCTTGGCATCCGC 60.251 55.000 4.83 0.00 46.43 5.54
2214 2361 0.171007 ATCTTGGCATCCGCGTTTTG 59.829 50.000 4.92 0.00 39.92 2.44
2228 2375 3.726782 CGCGTTTTGTAATAGCCCTGAAC 60.727 47.826 0.00 0.00 0.00 3.18
2268 2862 7.825681 TGCAGCAATTTTTATAGCTCTGTTTA 58.174 30.769 0.00 0.00 34.61 2.01
2297 3373 2.089980 AGCAATCTTGGTCAGCATGTC 58.910 47.619 0.00 0.00 37.40 3.06
2304 3380 4.264253 TCTTGGTCAGCATGTCTATTTGG 58.736 43.478 0.00 0.00 37.40 3.28
2305 3381 2.368439 TGGTCAGCATGTCTATTTGGC 58.632 47.619 0.00 0.00 37.40 4.52
2364 3764 4.996758 GGCAAGTTAAGCATTGACCATTTT 59.003 37.500 0.00 0.00 34.77 1.82
2399 4217 6.501102 ACAATATGACTCATCCTCATCTCCAT 59.499 38.462 0.00 0.00 30.76 3.41
2439 4257 7.610305 GGAGAAAAACCATATTCAGAGGTTACA 59.390 37.037 0.00 0.00 44.44 2.41
2448 4266 4.574674 TTCAGAGGTTACAGAATGGCAT 57.425 40.909 0.00 0.00 43.62 4.40
2449 4267 4.574674 TCAGAGGTTACAGAATGGCATT 57.425 40.909 13.54 13.54 43.62 3.56
2450 4268 4.264253 TCAGAGGTTACAGAATGGCATTG 58.736 43.478 19.07 7.60 43.62 2.82
2451 4269 3.019564 AGAGGTTACAGAATGGCATTGC 58.980 45.455 19.07 9.31 43.62 3.56
2452 4270 1.745087 AGGTTACAGAATGGCATTGCG 59.255 47.619 19.07 10.54 43.62 4.85
2453 4271 1.202290 GGTTACAGAATGGCATTGCGG 60.202 52.381 19.07 11.95 43.62 5.69
2455 4273 1.383456 TACAGAATGGCATTGCGGGC 61.383 55.000 19.07 2.34 43.62 6.13
2456 4274 3.520862 AGAATGGCATTGCGGGCG 61.521 61.111 19.07 0.00 35.84 6.13
2458 4276 3.355203 GAATGGCATTGCGGGCGTT 62.355 57.895 19.07 3.98 44.22 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.822676 TCAACAAAAGCATCAAACTTTTCCAT 59.177 30.769 0.00 0.00 43.62 3.41
4 5 7.225341 AGGATCAACAAAAGCATCAAACTTTTC 59.775 33.333 0.00 0.00 43.62 2.29
6 7 6.480981 CAGGATCAACAAAAGCATCAAACTTT 59.519 34.615 0.00 0.00 38.98 2.66
7 8 5.987347 CAGGATCAACAAAAGCATCAAACTT 59.013 36.000 0.00 0.00 0.00 2.66
8 9 5.535333 CAGGATCAACAAAAGCATCAAACT 58.465 37.500 0.00 0.00 0.00 2.66
9 10 4.151157 GCAGGATCAACAAAAGCATCAAAC 59.849 41.667 0.00 0.00 0.00 2.93
10 11 4.039488 AGCAGGATCAACAAAAGCATCAAA 59.961 37.500 0.00 0.00 0.00 2.69
11 12 3.575256 AGCAGGATCAACAAAAGCATCAA 59.425 39.130 0.00 0.00 0.00 2.57
12 13 3.057104 CAGCAGGATCAACAAAAGCATCA 60.057 43.478 0.00 0.00 0.00 3.07
13 14 3.192001 TCAGCAGGATCAACAAAAGCATC 59.808 43.478 0.00 0.00 0.00 3.91
14 15 3.159472 TCAGCAGGATCAACAAAAGCAT 58.841 40.909 0.00 0.00 0.00 3.79
15 16 2.585330 TCAGCAGGATCAACAAAAGCA 58.415 42.857 0.00 0.00 0.00 3.91
16 17 3.254166 TCTTCAGCAGGATCAACAAAAGC 59.746 43.478 0.00 0.00 0.00 3.51
17 18 4.615452 GCTCTTCAGCAGGATCAACAAAAG 60.615 45.833 0.00 0.00 46.06 2.27
18 19 3.254166 GCTCTTCAGCAGGATCAACAAAA 59.746 43.478 0.00 0.00 46.06 2.44
19 20 2.816087 GCTCTTCAGCAGGATCAACAAA 59.184 45.455 0.00 0.00 46.06 2.83
20 21 2.430465 GCTCTTCAGCAGGATCAACAA 58.570 47.619 0.00 0.00 46.06 2.83
21 22 2.105006 GCTCTTCAGCAGGATCAACA 57.895 50.000 0.00 0.00 46.06 3.33
31 32 2.998316 AAGATAGGTGGCTCTTCAGC 57.002 50.000 0.00 0.00 46.06 4.26
32 33 8.588290 AGTATATAAGATAGGTGGCTCTTCAG 57.412 38.462 0.00 0.00 33.83 3.02
60 61 3.034569 GCTGCCGATGCGAATTTTT 57.965 47.368 0.00 0.00 41.78 1.94
61 62 4.792106 GCTGCCGATGCGAATTTT 57.208 50.000 0.00 0.00 41.78 1.82
68 69 1.156736 AATATTACCGCTGCCGATGC 58.843 50.000 0.00 0.00 36.29 3.91
69 70 4.201812 CCAATAATATTACCGCTGCCGATG 60.202 45.833 0.00 0.00 36.29 3.84
70 71 3.938963 CCAATAATATTACCGCTGCCGAT 59.061 43.478 0.00 0.00 36.29 4.18
71 72 3.007074 TCCAATAATATTACCGCTGCCGA 59.993 43.478 0.00 0.00 36.29 5.54
72 73 3.331150 TCCAATAATATTACCGCTGCCG 58.669 45.455 0.00 0.00 0.00 5.69
73 74 5.699097 TTTCCAATAATATTACCGCTGCC 57.301 39.130 0.00 0.00 0.00 4.85
74 75 6.149633 CCTTTTCCAATAATATTACCGCTGC 58.850 40.000 0.00 0.00 0.00 5.25
75 76 6.294508 CCCCTTTTCCAATAATATTACCGCTG 60.295 42.308 0.00 0.00 0.00 5.18
76 77 5.773176 CCCCTTTTCCAATAATATTACCGCT 59.227 40.000 0.00 0.00 0.00 5.52
77 78 5.047590 CCCCCTTTTCCAATAATATTACCGC 60.048 44.000 0.00 0.00 0.00 5.68
78 79 6.584185 CCCCCTTTTCCAATAATATTACCG 57.416 41.667 0.00 0.00 0.00 4.02
98 99 7.956328 AGTAAAGAAATCTTGAATAACCCCC 57.044 36.000 0.00 0.00 36.12 5.40
99 100 8.803235 ACAAGTAAAGAAATCTTGAATAACCCC 58.197 33.333 10.41 0.00 40.35 4.95
100 101 9.626045 CACAAGTAAAGAAATCTTGAATAACCC 57.374 33.333 10.41 0.00 40.35 4.11
105 106 9.125026 ACTGACACAAGTAAAGAAATCTTGAAT 57.875 29.630 10.41 0.00 40.35 2.57
106 107 8.397906 CACTGACACAAGTAAAGAAATCTTGAA 58.602 33.333 10.41 0.00 40.35 2.69
107 108 7.467267 GCACTGACACAAGTAAAGAAATCTTGA 60.467 37.037 10.41 0.00 40.35 3.02
108 109 6.634436 GCACTGACACAAGTAAAGAAATCTTG 59.366 38.462 0.00 0.00 42.60 3.02
109 110 6.543831 AGCACTGACACAAGTAAAGAAATCTT 59.456 34.615 0.00 0.00 37.91 2.40
110 111 6.058183 AGCACTGACACAAGTAAAGAAATCT 58.942 36.000 0.00 0.00 0.00 2.40
111 112 6.305693 AGCACTGACACAAGTAAAGAAATC 57.694 37.500 0.00 0.00 0.00 2.17
112 113 6.699575 AAGCACTGACACAAGTAAAGAAAT 57.300 33.333 0.00 0.00 0.00 2.17
113 114 6.509418 AAAGCACTGACACAAGTAAAGAAA 57.491 33.333 0.00 0.00 0.00 2.52
114 115 6.037830 GGTAAAGCACTGACACAAGTAAAGAA 59.962 38.462 0.00 0.00 0.00 2.52
115 116 5.526111 GGTAAAGCACTGACACAAGTAAAGA 59.474 40.000 0.00 0.00 0.00 2.52
116 117 5.277828 GGGTAAAGCACTGACACAAGTAAAG 60.278 44.000 0.00 0.00 0.00 1.85
117 118 4.577283 GGGTAAAGCACTGACACAAGTAAA 59.423 41.667 0.00 0.00 0.00 2.01
118 119 4.131596 GGGTAAAGCACTGACACAAGTAA 58.868 43.478 0.00 0.00 0.00 2.24
119 120 3.735591 GGGTAAAGCACTGACACAAGTA 58.264 45.455 0.00 0.00 0.00 2.24
120 121 2.572290 GGGTAAAGCACTGACACAAGT 58.428 47.619 0.00 0.00 0.00 3.16
121 122 1.531149 CGGGTAAAGCACTGACACAAG 59.469 52.381 0.00 0.00 0.00 3.16
122 123 1.588674 CGGGTAAAGCACTGACACAA 58.411 50.000 0.00 0.00 0.00 3.33
123 124 0.882927 GCGGGTAAAGCACTGACACA 60.883 55.000 0.00 0.00 34.19 3.72
124 125 0.602905 AGCGGGTAAAGCACTGACAC 60.603 55.000 0.00 0.00 37.01 3.67
125 126 0.970640 TAGCGGGTAAAGCACTGACA 59.029 50.000 0.00 0.00 37.01 3.58
126 127 1.933853 CATAGCGGGTAAAGCACTGAC 59.066 52.381 0.00 0.00 37.01 3.51
127 128 1.134521 CCATAGCGGGTAAAGCACTGA 60.135 52.381 0.00 0.00 37.01 3.41
128 129 1.299541 CCATAGCGGGTAAAGCACTG 58.700 55.000 0.00 0.00 37.01 3.66
129 130 3.780624 CCATAGCGGGTAAAGCACT 57.219 52.632 0.00 0.00 37.01 4.40
139 140 2.834549 AGAATAGATCCACCCATAGCGG 59.165 50.000 0.00 0.00 0.00 5.52
140 141 4.021104 TGAAGAATAGATCCACCCATAGCG 60.021 45.833 0.00 0.00 0.00 4.26
141 142 5.489792 TGAAGAATAGATCCACCCATAGC 57.510 43.478 0.00 0.00 0.00 2.97
142 143 8.601047 TCTATGAAGAATAGATCCACCCATAG 57.399 38.462 0.00 0.00 41.98 2.23
143 144 8.816894 GTTCTATGAAGAATAGATCCACCCATA 58.183 37.037 0.00 0.00 45.37 2.74
144 145 7.515514 AGTTCTATGAAGAATAGATCCACCCAT 59.484 37.037 0.00 0.00 45.37 4.00
145 146 6.846505 AGTTCTATGAAGAATAGATCCACCCA 59.153 38.462 0.00 0.00 45.37 4.51
146 147 7.309770 AGTTCTATGAAGAATAGATCCACCC 57.690 40.000 0.00 0.00 45.37 4.61
147 148 9.084533 ACTAGTTCTATGAAGAATAGATCCACC 57.915 37.037 0.00 0.00 45.37 4.61
156 157 8.132362 CGCAAGACTACTAGTTCTATGAAGAAT 58.868 37.037 0.00 0.00 41.60 2.40
157 158 7.415318 CCGCAAGACTACTAGTTCTATGAAGAA 60.415 40.741 0.00 0.00 38.55 2.52
158 159 6.038382 CCGCAAGACTACTAGTTCTATGAAGA 59.962 42.308 0.00 0.00 43.02 2.87
159 160 6.038382 TCCGCAAGACTACTAGTTCTATGAAG 59.962 42.308 0.00 0.00 43.02 3.02
160 161 5.884232 TCCGCAAGACTACTAGTTCTATGAA 59.116 40.000 0.00 0.00 43.02 2.57
161 162 5.434408 TCCGCAAGACTACTAGTTCTATGA 58.566 41.667 0.00 0.00 43.02 2.15
162 163 5.752892 TCCGCAAGACTACTAGTTCTATG 57.247 43.478 0.00 2.18 43.02 2.23
163 164 5.278561 GCATCCGCAAGACTACTAGTTCTAT 60.279 44.000 0.00 0.00 43.02 1.98
164 165 4.036498 GCATCCGCAAGACTACTAGTTCTA 59.964 45.833 0.00 0.00 43.02 2.10
165 166 3.181485 GCATCCGCAAGACTACTAGTTCT 60.181 47.826 0.00 0.00 43.02 3.01
166 167 3.117046 GCATCCGCAAGACTACTAGTTC 58.883 50.000 0.00 0.00 43.02 3.01
167 168 2.761208 AGCATCCGCAAGACTACTAGTT 59.239 45.455 0.00 0.00 42.27 2.24
168 169 2.379972 AGCATCCGCAAGACTACTAGT 58.620 47.619 0.00 0.00 42.27 2.57
169 170 4.775058 ATAGCATCCGCAAGACTACTAG 57.225 45.455 0.00 0.00 42.27 2.57
170 171 5.357314 GGATATAGCATCCGCAAGACTACTA 59.643 44.000 0.00 0.00 42.27 1.82
171 172 4.158764 GGATATAGCATCCGCAAGACTACT 59.841 45.833 0.00 0.00 42.27 2.57
172 173 4.158764 AGGATATAGCATCCGCAAGACTAC 59.841 45.833 0.00 0.00 42.87 2.73
173 174 4.344978 AGGATATAGCATCCGCAAGACTA 58.655 43.478 0.00 0.00 42.87 2.59
174 175 3.169099 AGGATATAGCATCCGCAAGACT 58.831 45.455 0.00 0.00 42.87 3.24
175 176 3.601443 AGGATATAGCATCCGCAAGAC 57.399 47.619 0.00 0.00 42.87 3.01
176 177 3.324846 ACAAGGATATAGCATCCGCAAGA 59.675 43.478 0.00 0.00 42.87 3.02
177 178 3.668447 ACAAGGATATAGCATCCGCAAG 58.332 45.455 0.00 0.00 42.87 4.01
178 179 3.769739 ACAAGGATATAGCATCCGCAA 57.230 42.857 0.00 0.00 42.87 4.85
179 180 3.769739 AACAAGGATATAGCATCCGCA 57.230 42.857 0.00 0.00 42.87 5.69
180 181 7.042335 ACTATAAACAAGGATATAGCATCCGC 58.958 38.462 0.00 0.00 42.87 5.54
181 182 8.873830 CAACTATAAACAAGGATATAGCATCCG 58.126 37.037 0.00 0.00 42.87 4.18
182 183 9.944376 TCAACTATAAACAAGGATATAGCATCC 57.056 33.333 0.00 0.00 36.15 3.51
192 193 9.621629 TCTTTCAAGTTCAACTATAAACAAGGA 57.378 29.630 0.00 0.00 0.00 3.36
193 194 9.665264 GTCTTTCAAGTTCAACTATAAACAAGG 57.335 33.333 0.00 0.00 0.00 3.61
202 203 9.677567 GCATAAATTGTCTTTCAAGTTCAACTA 57.322 29.630 0.00 0.00 42.18 2.24
203 204 8.196771 TGCATAAATTGTCTTTCAAGTTCAACT 58.803 29.630 0.00 0.00 42.18 3.16
204 205 8.351495 TGCATAAATTGTCTTTCAAGTTCAAC 57.649 30.769 0.00 0.00 42.18 3.18
208 209 9.090692 GCATATGCATAAATTGTCTTTCAAGTT 57.909 29.630 22.84 0.00 42.39 2.66
209 210 8.638685 GCATATGCATAAATTGTCTTTCAAGT 57.361 30.769 22.84 0.00 39.09 3.16
233 234 7.094933 AGAAAAATTCTTTGAATGCAAGGATGC 60.095 33.333 0.00 0.00 44.90 3.91
234 235 8.319143 AGAAAAATTCTTTGAATGCAAGGATG 57.681 30.769 0.00 0.00 39.47 3.51
235 236 9.649167 CTAGAAAAATTCTTTGAATGCAAGGAT 57.351 29.630 0.00 0.00 39.47 3.24
236 237 8.859090 TCTAGAAAAATTCTTTGAATGCAAGGA 58.141 29.630 0.00 0.00 41.14 3.36
237 238 9.480053 TTCTAGAAAAATTCTTTGAATGCAAGG 57.520 29.630 1.68 0.00 41.14 3.61
260 261 9.813446 GAAGAATGCTCAATATTGGAAAATTCT 57.187 29.630 15.36 18.11 34.26 2.40
261 262 9.813446 AGAAGAATGCTCAATATTGGAAAATTC 57.187 29.630 15.36 16.58 0.00 2.17
262 263 9.595823 CAGAAGAATGCTCAATATTGGAAAATT 57.404 29.630 15.36 10.05 0.00 1.82
263 264 8.755977 ACAGAAGAATGCTCAATATTGGAAAAT 58.244 29.630 15.36 2.46 0.00 1.82
264 265 8.125978 ACAGAAGAATGCTCAATATTGGAAAA 57.874 30.769 15.36 0.19 0.00 2.29
265 266 7.707624 ACAGAAGAATGCTCAATATTGGAAA 57.292 32.000 15.36 1.90 0.00 3.13
266 267 7.707624 AACAGAAGAATGCTCAATATTGGAA 57.292 32.000 15.36 1.61 0.00 3.53
267 268 8.806429 TTAACAGAAGAATGCTCAATATTGGA 57.194 30.769 15.36 2.03 0.00 3.53
268 269 7.646922 GCTTAACAGAAGAATGCTCAATATTGG 59.353 37.037 15.36 7.47 0.00 3.16
269 270 8.404000 AGCTTAACAGAAGAATGCTCAATATTG 58.596 33.333 9.29 9.29 0.00 1.90
270 271 8.517062 AGCTTAACAGAAGAATGCTCAATATT 57.483 30.769 0.00 0.00 0.00 1.28
271 272 8.404000 CAAGCTTAACAGAAGAATGCTCAATAT 58.596 33.333 0.00 0.00 0.00 1.28
272 273 7.627088 GCAAGCTTAACAGAAGAATGCTCAATA 60.627 37.037 0.00 0.00 31.80 1.90
273 274 6.618811 CAAGCTTAACAGAAGAATGCTCAAT 58.381 36.000 0.00 0.00 0.00 2.57
274 275 5.563475 GCAAGCTTAACAGAAGAATGCTCAA 60.563 40.000 0.00 0.00 31.80 3.02
275 276 4.083110 GCAAGCTTAACAGAAGAATGCTCA 60.083 41.667 0.00 0.00 31.80 4.26
276 277 4.083110 TGCAAGCTTAACAGAAGAATGCTC 60.083 41.667 0.00 0.00 34.01 4.26
277 278 3.822735 TGCAAGCTTAACAGAAGAATGCT 59.177 39.130 0.00 0.00 34.01 3.79
278 279 4.164294 CTGCAAGCTTAACAGAAGAATGC 58.836 43.478 19.21 7.16 33.10 3.56
348 349 6.454795 CACCCTATAGTGCACACAAATTTTT 58.545 36.000 21.04 0.00 0.00 1.94
349 350 5.047377 CCACCCTATAGTGCACACAAATTTT 60.047 40.000 21.04 0.00 36.38 1.82
350 351 4.462483 CCACCCTATAGTGCACACAAATTT 59.538 41.667 21.04 0.00 36.38 1.82
351 352 4.016444 CCACCCTATAGTGCACACAAATT 58.984 43.478 21.04 0.00 36.38 1.82
352 353 3.265737 TCCACCCTATAGTGCACACAAAT 59.734 43.478 21.04 9.23 36.38 2.32
353 354 2.640332 TCCACCCTATAGTGCACACAAA 59.360 45.455 21.04 1.29 36.38 2.83
354 355 2.027561 GTCCACCCTATAGTGCACACAA 60.028 50.000 21.04 4.13 36.38 3.33
355 356 1.553248 GTCCACCCTATAGTGCACACA 59.447 52.381 21.04 6.62 36.38 3.72
356 357 1.470979 CGTCCACCCTATAGTGCACAC 60.471 57.143 21.04 2.98 36.38 3.82
357 358 0.821517 CGTCCACCCTATAGTGCACA 59.178 55.000 21.04 5.47 36.38 4.57
358 359 0.529992 GCGTCCACCCTATAGTGCAC 60.530 60.000 9.40 9.40 36.38 4.57
359 360 0.686441 AGCGTCCACCCTATAGTGCA 60.686 55.000 0.00 0.00 36.38 4.57
360 361 0.249489 CAGCGTCCACCCTATAGTGC 60.249 60.000 0.00 0.00 36.38 4.40
361 362 0.389391 CCAGCGTCCACCCTATAGTG 59.611 60.000 0.00 0.00 37.51 2.74
362 363 1.400530 GCCAGCGTCCACCCTATAGT 61.401 60.000 0.00 0.00 0.00 2.12
363 364 1.367840 GCCAGCGTCCACCCTATAG 59.632 63.158 0.00 0.00 0.00 1.31
364 365 2.138179 GGCCAGCGTCCACCCTATA 61.138 63.158 0.00 0.00 0.00 1.31
365 366 3.480133 GGCCAGCGTCCACCCTAT 61.480 66.667 0.00 0.00 0.00 2.57
370 371 4.101448 AGGATGGCCAGCGTCCAC 62.101 66.667 23.00 6.37 36.26 4.02
371 372 3.785859 GAGGATGGCCAGCGTCCA 61.786 66.667 28.84 0.00 38.09 4.02
372 373 4.554036 GGAGGATGGCCAGCGTCC 62.554 72.222 38.31 38.31 43.19 4.79
373 374 4.554036 GGGAGGATGGCCAGCGTC 62.554 72.222 30.57 30.57 36.29 5.19
375 376 2.519622 TATGGGAGGATGGCCAGCG 61.520 63.158 16.15 0.00 36.29 5.18
376 377 1.073897 GTATGGGAGGATGGCCAGC 59.926 63.158 14.08 14.08 36.29 4.85
377 378 0.399454 CTGTATGGGAGGATGGCCAG 59.601 60.000 13.05 0.00 36.29 4.85
378 379 1.061905 CCTGTATGGGAGGATGGCCA 61.062 60.000 8.56 8.56 36.29 5.36
379 380 1.763770 CCTGTATGGGAGGATGGCC 59.236 63.158 0.00 0.00 31.48 5.36
380 381 1.073897 GCCTGTATGGGAGGATGGC 59.926 63.158 0.00 0.00 36.00 4.40
381 382 0.846015 TTGCCTGTATGGGAGGATGG 59.154 55.000 0.00 0.00 37.50 3.51
382 383 2.553904 GGATTGCCTGTATGGGAGGATG 60.554 54.545 0.00 0.00 37.50 3.51
383 384 1.707427 GGATTGCCTGTATGGGAGGAT 59.293 52.381 0.00 0.00 37.50 3.24
384 385 1.140312 GGATTGCCTGTATGGGAGGA 58.860 55.000 0.00 0.00 37.50 3.71
385 386 1.143813 AGGATTGCCTGTATGGGAGG 58.856 55.000 0.00 0.00 44.90 4.30
394 395 6.314376 ATCCTGATCGAAGAGGATTGCCTG 62.314 50.000 18.54 0.00 45.27 4.85
395 396 4.266786 ATCCTGATCGAAGAGGATTGCCT 61.267 47.826 18.54 2.57 45.27 4.75
396 397 1.414181 TCCTGATCGAAGAGGATTGCC 59.586 52.381 10.93 0.00 43.63 4.52
397 398 2.898729 TCCTGATCGAAGAGGATTGC 57.101 50.000 10.93 0.00 43.63 3.56
398 399 4.869297 GCATATCCTGATCGAAGAGGATTG 59.131 45.833 25.63 22.35 45.27 2.67
399 400 4.381398 CGCATATCCTGATCGAAGAGGATT 60.381 45.833 25.63 14.90 45.27 3.01
401 402 2.489722 CGCATATCCTGATCGAAGAGGA 59.510 50.000 16.00 16.00 43.63 3.71
402 403 2.489722 TCGCATATCCTGATCGAAGAGG 59.510 50.000 6.73 6.73 43.63 3.69
403 404 3.839051 TCGCATATCCTGATCGAAGAG 57.161 47.619 0.00 0.00 43.63 2.85
404 405 4.362932 GATCGCATATCCTGATCGAAGA 57.637 45.455 0.00 0.00 45.75 2.87
409 410 1.565305 GCCGATCGCATATCCTGATC 58.435 55.000 10.32 0.00 37.47 2.92
410 411 0.176680 GGCCGATCGCATATCCTGAT 59.823 55.000 10.32 0.00 40.31 2.90
411 412 1.591703 GGCCGATCGCATATCCTGA 59.408 57.895 10.32 0.00 40.31 3.86
412 413 1.807165 CGGCCGATCGCATATCCTG 60.807 63.158 24.07 0.00 40.31 3.86
413 414 2.573869 CGGCCGATCGCATATCCT 59.426 61.111 24.07 0.00 40.31 3.24
440 441 4.409247 ACGATATCTCTTAAGGCCTTGGTT 59.591 41.667 28.77 3.65 0.00 3.67
442 443 4.608948 ACGATATCTCTTAAGGCCTTGG 57.391 45.455 28.77 19.48 0.00 3.61
462 464 0.259938 ATGCCAAGGGGATCTCCAAC 59.740 55.000 15.83 0.00 37.91 3.77
484 486 5.367937 TCCAAAAATGTCAAAGATGGGGAAA 59.632 36.000 0.00 0.00 0.00 3.13
487 489 4.888326 TCCAAAAATGTCAAAGATGGGG 57.112 40.909 0.00 0.00 0.00 4.96
497 499 4.324402 GCGTGAACATGATCCAAAAATGTC 59.676 41.667 0.00 0.00 33.48 3.06
500 502 4.218200 TCTGCGTGAACATGATCCAAAAAT 59.782 37.500 0.00 0.00 0.00 1.82
505 507 1.675714 GGTCTGCGTGAACATGATCCA 60.676 52.381 0.00 0.00 31.33 3.41
506 508 1.009829 GGTCTGCGTGAACATGATCC 58.990 55.000 0.00 0.00 31.33 3.36
544 547 9.261180 TGTGTGTGTTTTGAAGAAATTTTGTTA 57.739 25.926 0.00 0.00 0.00 2.41
549 552 6.370994 TGCATGTGTGTGTTTTGAAGAAATTT 59.629 30.769 0.00 0.00 0.00 1.82
550 553 5.873712 TGCATGTGTGTGTTTTGAAGAAATT 59.126 32.000 0.00 0.00 0.00 1.82
569 572 1.399440 CAGGGAAACTGTCGATGCATG 59.601 52.381 2.46 0.00 42.42 4.06
571 574 3.231734 CAGGGAAACTGTCGATGCA 57.768 52.632 0.00 0.00 42.42 3.96
585 588 1.524621 CCTATTGGAGCGCACAGGG 60.525 63.158 11.47 8.12 34.57 4.45
587 590 1.524621 CCCCTATTGGAGCGCACAG 60.525 63.158 11.47 0.00 35.39 3.66
663 667 0.293723 CGTCTCGCGGTTGTATTTCG 59.706 55.000 6.13 0.00 36.85 3.46
664 668 1.621107 TCGTCTCGCGGTTGTATTTC 58.379 50.000 6.13 0.00 41.72 2.17
665 669 2.068837 TTCGTCTCGCGGTTGTATTT 57.931 45.000 6.13 0.00 41.72 1.40
666 670 2.068837 TTTCGTCTCGCGGTTGTATT 57.931 45.000 6.13 0.00 41.72 1.89
667 671 2.068837 TTTTCGTCTCGCGGTTGTAT 57.931 45.000 6.13 0.00 41.72 2.29
668 672 1.522258 GTTTTTCGTCTCGCGGTTGTA 59.478 47.619 6.13 0.00 41.72 2.41
669 673 0.302589 GTTTTTCGTCTCGCGGTTGT 59.697 50.000 6.13 0.00 41.72 3.32
670 674 0.383860 GGTTTTTCGTCTCGCGGTTG 60.384 55.000 6.13 0.00 41.72 3.77
671 675 0.810823 TGGTTTTTCGTCTCGCGGTT 60.811 50.000 6.13 0.00 41.72 4.44
672 676 0.810823 TTGGTTTTTCGTCTCGCGGT 60.811 50.000 6.13 0.00 41.72 5.68
673 677 0.305313 TTTGGTTTTTCGTCTCGCGG 59.695 50.000 6.13 0.00 41.72 6.46
674 678 1.004292 AGTTTGGTTTTTCGTCTCGCG 60.004 47.619 0.00 0.00 43.01 5.87
675 679 2.750301 AGTTTGGTTTTTCGTCTCGC 57.250 45.000 0.00 0.00 0.00 5.03
676 680 4.267357 TGAAGTTTGGTTTTTCGTCTCG 57.733 40.909 0.00 0.00 0.00 4.04
683 687 7.623297 GCTTCGTTTTCATGAAGTTTGGTTTTT 60.623 33.333 8.41 0.00 44.92 1.94
688 692 4.442073 CAGCTTCGTTTTCATGAAGTTTGG 59.558 41.667 8.41 0.89 44.92 3.28
704 708 1.743252 GGGAACAGGAGCAGCTTCG 60.743 63.158 0.00 0.00 0.00 3.79
732 736 1.170290 CGGGAACAGGAGCGGTTTTT 61.170 55.000 0.00 0.00 0.00 1.94
733 737 1.599797 CGGGAACAGGAGCGGTTTT 60.600 57.895 0.00 0.00 0.00 2.43
734 738 2.032071 CGGGAACAGGAGCGGTTT 59.968 61.111 0.00 0.00 0.00 3.27
735 739 4.699522 GCGGGAACAGGAGCGGTT 62.700 66.667 0.00 0.00 0.00 4.44
740 744 2.365095 GATACGGGCGGGAACAGGAG 62.365 65.000 0.00 0.00 0.00 3.69
741 745 2.364579 ATACGGGCGGGAACAGGA 60.365 61.111 0.00 0.00 0.00 3.86
742 746 1.968050 AAGATACGGGCGGGAACAGG 61.968 60.000 0.00 0.00 0.00 4.00
743 747 0.107848 AAAGATACGGGCGGGAACAG 60.108 55.000 0.00 0.00 0.00 3.16
744 748 0.325602 AAAAGATACGGGCGGGAACA 59.674 50.000 0.00 0.00 0.00 3.18
745 749 1.012086 GAAAAGATACGGGCGGGAAC 58.988 55.000 0.00 0.00 0.00 3.62
746 750 0.460635 CGAAAAGATACGGGCGGGAA 60.461 55.000 0.00 0.00 0.00 3.97
1425 1468 1.528309 CTTGGTGACGGCCTTGGTT 60.528 57.895 0.00 0.00 0.00 3.67
1491 1534 2.584835 ATTTCCAGCCAGCACTAACA 57.415 45.000 0.00 0.00 0.00 2.41
1511 1554 1.690352 AGCATTGGCAAGCTTTCAACT 59.310 42.857 15.41 5.70 44.61 3.16
1518 1561 1.541670 CCAACAAAGCATTGGCAAGCT 60.542 47.619 15.41 15.41 44.61 3.74
1525 1568 1.788308 CAACGAGCCAACAAAGCATTG 59.212 47.619 0.00 0.00 42.46 2.82
1546 1589 4.021192 CAGCACAAATTCACCCCTTACAAT 60.021 41.667 0.00 0.00 0.00 2.71
1554 1597 2.531522 AAAGCAGCACAAATTCACCC 57.468 45.000 0.00 0.00 0.00 4.61
1555 1598 2.545106 CCAAAAGCAGCACAAATTCACC 59.455 45.455 0.00 0.00 0.00 4.02
1587 1630 9.329913 CAGAAATGAATCGTTTTACTTTCGAAT 57.670 29.630 0.00 0.00 37.16 3.34
1588 1631 7.322699 GCAGAAATGAATCGTTTTACTTTCGAA 59.677 33.333 1.63 0.00 37.16 3.71
1599 1642 2.415090 GCAGCAGCAGAAATGAATCGTT 60.415 45.455 0.00 0.00 41.58 3.85
1601 1644 1.823828 GCAGCAGCAGAAATGAATCG 58.176 50.000 0.00 0.00 41.58 3.34
1605 1648 1.733912 CTAACGCAGCAGCAGAAATGA 59.266 47.619 0.82 0.00 42.27 2.57
1616 1659 3.125316 ACAGCAGAAATTACTAACGCAGC 59.875 43.478 0.00 0.00 0.00 5.25
1618 1661 4.311606 TCACAGCAGAAATTACTAACGCA 58.688 39.130 0.00 0.00 0.00 5.24
1625 1668 7.088589 ACAACCATATCACAGCAGAAATTAC 57.911 36.000 0.00 0.00 0.00 1.89
1642 1685 3.102204 ACGGCTACCTAGTAACAACCAT 58.898 45.455 0.00 0.00 0.00 3.55
1645 1688 4.396166 TCAGTACGGCTACCTAGTAACAAC 59.604 45.833 0.00 0.00 0.00 3.32
1652 1695 2.226912 GCAGATCAGTACGGCTACCTAG 59.773 54.545 0.00 0.00 0.00 3.02
1658 1701 1.341531 GTATGGCAGATCAGTACGGCT 59.658 52.381 0.00 0.00 0.00 5.52
1660 1703 3.452755 TTGTATGGCAGATCAGTACGG 57.547 47.619 0.00 0.00 0.00 4.02
1661 1704 4.620982 TGATTGTATGGCAGATCAGTACG 58.379 43.478 0.00 0.00 0.00 3.67
1663 1706 4.999311 GCATGATTGTATGGCAGATCAGTA 59.001 41.667 0.00 0.00 32.45 2.74
1666 1709 4.094830 AGCATGATTGTATGGCAGATCA 57.905 40.909 0.00 0.68 33.00 2.92
1667 1710 5.449107 AAAGCATGATTGTATGGCAGATC 57.551 39.130 0.00 0.00 0.00 2.75
1686 1729 5.049167 TGGAAATTTGCACTGCTACAAAAG 58.951 37.500 8.47 0.00 39.09 2.27
1687 1730 5.016051 TGGAAATTTGCACTGCTACAAAA 57.984 34.783 8.47 0.00 39.09 2.44
1688 1731 4.340666 TCTGGAAATTTGCACTGCTACAAA 59.659 37.500 8.47 0.00 39.87 2.83
1689 1732 3.888323 TCTGGAAATTTGCACTGCTACAA 59.112 39.130 8.47 0.00 0.00 2.41
1690 1733 3.485394 TCTGGAAATTTGCACTGCTACA 58.515 40.909 8.47 0.00 0.00 2.74
1691 1734 4.708726 ATCTGGAAATTTGCACTGCTAC 57.291 40.909 8.47 0.00 0.00 3.58
1692 1735 7.122501 TGAATAATCTGGAAATTTGCACTGCTA 59.877 33.333 8.47 0.00 0.00 3.49
1693 1736 5.927281 ATAATCTGGAAATTTGCACTGCT 57.073 34.783 8.47 0.00 0.00 4.24
1694 1737 6.101332 TGAATAATCTGGAAATTTGCACTGC 58.899 36.000 8.47 0.00 0.00 4.40
1695 1738 8.712285 AATGAATAATCTGGAAATTTGCACTG 57.288 30.769 8.47 0.39 0.00 3.66
1696 1739 9.158233 CAAATGAATAATCTGGAAATTTGCACT 57.842 29.630 8.47 0.00 29.79 4.40
1697 1740 8.938906 ACAAATGAATAATCTGGAAATTTGCAC 58.061 29.630 8.47 0.00 37.15 4.57
1698 1741 9.504708 AACAAATGAATAATCTGGAAATTTGCA 57.495 25.926 12.14 12.14 37.15 4.08
1699 1742 9.763465 CAACAAATGAATAATCTGGAAATTTGC 57.237 29.630 2.22 2.22 37.15 3.68
1714 1757 7.067494 GGCCTATCTACTTGTCAACAAATGAAT 59.933 37.037 0.00 0.00 40.50 2.57
1715 1758 6.374333 GGCCTATCTACTTGTCAACAAATGAA 59.626 38.462 0.00 0.00 40.50 2.57
1717 1760 5.220662 CGGCCTATCTACTTGTCAACAAATG 60.221 44.000 0.00 0.00 35.15 2.32
1719 1762 4.250464 CGGCCTATCTACTTGTCAACAAA 58.750 43.478 0.00 0.00 35.15 2.83
1720 1763 3.369052 CCGGCCTATCTACTTGTCAACAA 60.369 47.826 0.00 0.00 0.00 2.83
1723 1766 1.760613 CCCGGCCTATCTACTTGTCAA 59.239 52.381 0.00 0.00 0.00 3.18
1725 1768 1.411041 ACCCGGCCTATCTACTTGTC 58.589 55.000 0.00 0.00 0.00 3.18
1726 1769 1.875488 AACCCGGCCTATCTACTTGT 58.125 50.000 0.00 0.00 0.00 3.16
1729 1772 4.657039 TCAATTAAACCCGGCCTATCTACT 59.343 41.667 0.00 0.00 0.00 2.57
1730 1773 4.964593 TCAATTAAACCCGGCCTATCTAC 58.035 43.478 0.00 0.00 0.00 2.59
1731 1774 5.633655 TTCAATTAAACCCGGCCTATCTA 57.366 39.130 0.00 0.00 0.00 1.98
1732 1775 4.513406 TTCAATTAAACCCGGCCTATCT 57.487 40.909 0.00 0.00 0.00 1.98
1733 1776 5.535030 AGAATTCAATTAAACCCGGCCTATC 59.465 40.000 8.44 0.00 0.00 2.08
1734 1777 5.301805 CAGAATTCAATTAAACCCGGCCTAT 59.698 40.000 8.44 0.00 0.00 2.57
1740 1849 7.145323 ACAAGAACAGAATTCAATTAAACCCG 58.855 34.615 8.44 0.00 0.00 5.28
1741 1850 8.887036 AACAAGAACAGAATTCAATTAAACCC 57.113 30.769 8.44 0.00 0.00 4.11
1752 1861 7.939039 TGATACTCTGGAAACAAGAACAGAATT 59.061 33.333 0.00 0.00 42.06 2.17
1760 1869 4.082190 CCGTCTGATACTCTGGAAACAAGA 60.082 45.833 0.00 0.00 42.06 3.02
1761 1870 4.082190 TCCGTCTGATACTCTGGAAACAAG 60.082 45.833 0.00 0.00 42.06 3.16
1762 1871 3.830178 TCCGTCTGATACTCTGGAAACAA 59.170 43.478 0.00 0.00 42.06 2.83
1765 1874 3.384789 CCATCCGTCTGATACTCTGGAAA 59.615 47.826 0.00 0.00 30.56 3.13
1766 1875 2.959030 CCATCCGTCTGATACTCTGGAA 59.041 50.000 0.00 0.00 30.56 3.53
1768 1877 1.615883 CCCATCCGTCTGATACTCTGG 59.384 57.143 0.00 0.00 30.56 3.86
1769 1878 1.000283 GCCCATCCGTCTGATACTCTG 60.000 57.143 0.00 0.00 30.56 3.35
1770 1879 1.133325 AGCCCATCCGTCTGATACTCT 60.133 52.381 0.00 0.00 30.56 3.24
1771 1880 1.333177 AGCCCATCCGTCTGATACTC 58.667 55.000 0.00 0.00 30.56 2.59
1772 1881 1.794714 AAGCCCATCCGTCTGATACT 58.205 50.000 0.00 0.00 30.56 2.12
1773 1882 3.746045 TTAAGCCCATCCGTCTGATAC 57.254 47.619 0.00 0.00 30.56 2.24
1774 1883 3.646162 ACATTAAGCCCATCCGTCTGATA 59.354 43.478 0.00 0.00 30.56 2.15
1775 1884 2.439507 ACATTAAGCCCATCCGTCTGAT 59.560 45.455 0.00 0.00 0.00 2.90
1776 1885 1.837439 ACATTAAGCCCATCCGTCTGA 59.163 47.619 0.00 0.00 0.00 3.27
1777 1886 2.332063 ACATTAAGCCCATCCGTCTG 57.668 50.000 0.00 0.00 0.00 3.51
1778 1887 2.643551 CAACATTAAGCCCATCCGTCT 58.356 47.619 0.00 0.00 0.00 4.18
1779 1888 1.065551 GCAACATTAAGCCCATCCGTC 59.934 52.381 0.00 0.00 0.00 4.79
1780 1889 1.102978 GCAACATTAAGCCCATCCGT 58.897 50.000 0.00 0.00 0.00 4.69
1782 1891 2.159057 CCTTGCAACATTAAGCCCATCC 60.159 50.000 0.00 0.00 0.00 3.51
1784 1893 2.818921 TCCTTGCAACATTAAGCCCAT 58.181 42.857 0.00 0.00 0.00 4.00
1787 1896 4.519540 TTCTTCCTTGCAACATTAAGCC 57.480 40.909 0.00 0.00 0.00 4.35
1789 1898 7.699812 GCTCTTATTCTTCCTTGCAACATTAAG 59.300 37.037 0.00 0.00 0.00 1.85
1818 1934 0.040058 ACAGCAGGCAATCCATTGGA 59.960 50.000 8.08 8.08 38.21 3.53
1819 1935 0.899720 AACAGCAGGCAATCCATTGG 59.100 50.000 0.00 0.00 38.21 3.16
1826 1942 4.677673 AGAAAAAGAAACAGCAGGCAAT 57.322 36.364 0.00 0.00 0.00 3.56
1831 1947 6.147656 ACCAAAACAAGAAAAAGAAACAGCAG 59.852 34.615 0.00 0.00 0.00 4.24
1843 1959 6.127952 ACGCTAACAACTACCAAAACAAGAAA 60.128 34.615 0.00 0.00 0.00 2.52
1865 1981 2.537214 GGTACGGCTAGATAAACAACGC 59.463 50.000 0.00 0.00 0.00 4.84
1871 1987 8.967664 ATAAACAATTGGTACGGCTAGATAAA 57.032 30.769 10.83 0.00 0.00 1.40
1877 1993 5.736813 ACTGATAAACAATTGGTACGGCTA 58.263 37.500 10.83 0.00 0.00 3.93
1891 2007 9.120538 TCCAGCCTGATAATTTAACTGATAAAC 57.879 33.333 0.00 0.00 36.35 2.01
1894 2010 6.936900 GCTCCAGCCTGATAATTTAACTGATA 59.063 38.462 0.00 0.00 34.31 2.15
1895 2011 5.767168 GCTCCAGCCTGATAATTTAACTGAT 59.233 40.000 0.00 0.00 34.31 2.90
1896 2012 5.104360 AGCTCCAGCCTGATAATTTAACTGA 60.104 40.000 0.00 0.00 43.38 3.41
1897 2013 5.008415 CAGCTCCAGCCTGATAATTTAACTG 59.992 44.000 0.00 0.00 43.38 3.16
1898 2014 5.128919 CAGCTCCAGCCTGATAATTTAACT 58.871 41.667 0.00 0.00 43.38 2.24
1899 2015 4.261363 GCAGCTCCAGCCTGATAATTTAAC 60.261 45.833 0.00 0.00 43.38 2.01
1900 2016 3.885297 GCAGCTCCAGCCTGATAATTTAA 59.115 43.478 0.00 0.00 43.38 1.52
1901 2017 3.480470 GCAGCTCCAGCCTGATAATTTA 58.520 45.455 0.00 0.00 43.38 1.40
1903 2019 1.978454 GCAGCTCCAGCCTGATAATT 58.022 50.000 0.00 0.00 43.38 1.40
1904 2020 3.721793 GCAGCTCCAGCCTGATAAT 57.278 52.632 0.00 0.00 43.38 1.28
1926 2042 5.942236 ACACTTGACATATTCAGAGCAACAT 59.058 36.000 0.00 0.00 34.94 2.71
1931 2047 5.290643 GTCTCACACTTGACATATTCAGAGC 59.709 44.000 0.00 0.00 34.94 4.09
1939 2055 5.874810 GCCTAATTGTCTCACACTTGACATA 59.125 40.000 0.00 0.00 41.93 2.29
1944 2060 4.614535 GCAAGCCTAATTGTCTCACACTTG 60.615 45.833 0.00 0.00 36.08 3.16
1951 2067 2.991250 TCCAGCAAGCCTAATTGTCTC 58.009 47.619 0.00 0.00 32.56 3.36
1983 2099 9.362539 GCATGTCATTAGAATTTCATCTTGTTT 57.637 29.630 0.00 0.00 0.00 2.83
2002 2118 9.465985 CAATTGTGCATATAAATTAGCATGTCA 57.534 29.630 0.00 0.00 39.43 3.58
2003 2119 8.918658 CCAATTGTGCATATAAATTAGCATGTC 58.081 33.333 4.43 0.00 39.43 3.06
2004 2120 8.423349 ACCAATTGTGCATATAAATTAGCATGT 58.577 29.630 4.43 0.00 39.43 3.21
2005 2121 8.705134 CACCAATTGTGCATATAAATTAGCATG 58.295 33.333 4.43 0.00 39.43 4.06
2006 2122 8.821147 CACCAATTGTGCATATAAATTAGCAT 57.179 30.769 4.43 0.00 39.43 3.79
2062 2186 5.362717 TGTTGAGTACATGATACTACCAGGG 59.637 44.000 0.00 0.00 0.00 4.45
2067 2191 6.805271 ACGTTGTGTTGAGTACATGATACTAC 59.195 38.462 0.00 1.26 39.39 2.73
2073 2197 6.044046 AGTTAACGTTGTGTTGAGTACATGA 58.956 36.000 11.99 0.00 42.01 3.07
2087 2211 8.998989 CAATTTATGTGCAGATAGTTAACGTTG 58.001 33.333 11.99 0.00 0.00 4.10
2094 2218 8.701908 ATCCATCAATTTATGTGCAGATAGTT 57.298 30.769 3.53 1.36 0.00 2.24
2095 2219 8.573885 CAATCCATCAATTTATGTGCAGATAGT 58.426 33.333 3.53 0.00 0.00 2.12
2096 2220 8.789762 TCAATCCATCAATTTATGTGCAGATAG 58.210 33.333 3.53 0.00 0.00 2.08
2098 2222 7.591421 TCAATCCATCAATTTATGTGCAGAT 57.409 32.000 0.53 0.53 0.00 2.90
2099 2223 7.591421 ATCAATCCATCAATTTATGTGCAGA 57.409 32.000 0.00 0.00 0.00 4.26
2101 2225 8.916062 AGTTATCAATCCATCAATTTATGTGCA 58.084 29.630 0.00 0.00 0.00 4.57
2102 2226 9.754382 AAGTTATCAATCCATCAATTTATGTGC 57.246 29.630 0.00 0.00 0.00 4.57
2108 2232 9.246670 TCACAGAAGTTATCAATCCATCAATTT 57.753 29.630 0.00 0.00 0.00 1.82
2109 2233 8.680903 GTCACAGAAGTTATCAATCCATCAATT 58.319 33.333 0.00 0.00 0.00 2.32
2110 2234 7.284034 GGTCACAGAAGTTATCAATCCATCAAT 59.716 37.037 0.00 0.00 0.00 2.57
2111 2235 6.599244 GGTCACAGAAGTTATCAATCCATCAA 59.401 38.462 0.00 0.00 0.00 2.57
2115 2239 5.762179 AGGTCACAGAAGTTATCAATCCA 57.238 39.130 0.00 0.00 0.00 3.41
2118 2242 6.595716 GCAACTAGGTCACAGAAGTTATCAAT 59.404 38.462 0.00 0.00 31.20 2.57
2119 2243 5.932303 GCAACTAGGTCACAGAAGTTATCAA 59.068 40.000 0.00 0.00 31.20 2.57
2120 2244 5.479306 GCAACTAGGTCACAGAAGTTATCA 58.521 41.667 0.00 0.00 31.20 2.15
2121 2245 4.870991 GGCAACTAGGTCACAGAAGTTATC 59.129 45.833 0.00 0.00 31.20 1.75
2122 2246 4.286032 TGGCAACTAGGTCACAGAAGTTAT 59.714 41.667 0.00 0.00 31.20 1.89
2123 2247 3.644265 TGGCAACTAGGTCACAGAAGTTA 59.356 43.478 0.00 0.00 31.20 2.24
2124 2248 2.438021 TGGCAACTAGGTCACAGAAGTT 59.562 45.455 0.00 0.00 32.52 2.66
2125 2249 2.047061 TGGCAACTAGGTCACAGAAGT 58.953 47.619 0.00 0.00 37.61 3.01
2126 2250 2.839486 TGGCAACTAGGTCACAGAAG 57.161 50.000 0.00 0.00 37.61 2.85
2127 2251 2.290260 CCATGGCAACTAGGTCACAGAA 60.290 50.000 0.00 0.00 37.61 3.02
2128 2252 1.278985 CCATGGCAACTAGGTCACAGA 59.721 52.381 0.00 0.00 37.61 3.41
2129 2253 1.003580 ACCATGGCAACTAGGTCACAG 59.996 52.381 13.04 0.00 39.73 3.66
2130 2254 1.064003 ACCATGGCAACTAGGTCACA 58.936 50.000 13.04 0.00 39.73 3.58
2131 2255 2.236395 ACTACCATGGCAACTAGGTCAC 59.764 50.000 13.04 0.00 42.26 3.67
2132 2256 2.546899 ACTACCATGGCAACTAGGTCA 58.453 47.619 13.04 0.00 42.26 4.02
2133 2257 4.957684 ATACTACCATGGCAACTAGGTC 57.042 45.455 13.04 0.00 42.26 3.85
2134 2258 6.329197 ACATAATACTACCATGGCAACTAGGT 59.671 38.462 13.04 8.87 44.69 3.08
2135 2259 6.769512 ACATAATACTACCATGGCAACTAGG 58.230 40.000 13.04 0.62 37.26 3.02
2138 2262 9.101325 ACTATACATAATACTACCATGGCAACT 57.899 33.333 13.04 0.00 37.61 3.16
2140 2264 8.876181 ACACTATACATAATACTACCATGGCAA 58.124 33.333 13.04 0.00 0.00 4.52
2141 2265 8.430573 ACACTATACATAATACTACCATGGCA 57.569 34.615 13.04 0.00 0.00 4.92
2142 2266 9.151471 CAACACTATACATAATACTACCATGGC 57.849 37.037 13.04 0.00 0.00 4.40
2143 2267 9.653287 CCAACACTATACATAATACTACCATGG 57.347 37.037 11.19 11.19 0.00 3.66
2184 2308 1.146930 GCCAAGATCCTGATCGCCA 59.853 57.895 1.67 0.00 42.48 5.69
2194 2318 0.451783 AAAACGCGGATGCCAAGATC 59.548 50.000 12.47 0.00 38.08 2.75
2208 2355 5.622770 AAGTTCAGGGCTATTACAAAACG 57.377 39.130 0.00 0.00 0.00 3.60
2243 2391 5.902613 ACAGAGCTATAAAAATTGCTGCA 57.097 34.783 0.00 0.00 35.76 4.41
2268 2862 7.282585 TGCTGACCAAGATTGCTATTAACTAT 58.717 34.615 0.00 0.00 0.00 2.12
2271 2865 5.818136 TGCTGACCAAGATTGCTATTAAC 57.182 39.130 0.00 0.00 0.00 2.01
2274 2868 4.275810 ACATGCTGACCAAGATTGCTATT 58.724 39.130 0.00 0.00 0.00 1.73
2282 2876 4.264253 CCAAATAGACATGCTGACCAAGA 58.736 43.478 0.00 0.00 0.00 3.02
2364 3764 8.270030 AGGATGAGTCATATTGTTGAATTCTCA 58.730 33.333 5.38 3.58 34.68 3.27
2385 3785 3.502595 GCATTGACATGGAGATGAGGATG 59.497 47.826 0.00 0.00 33.36 3.51
2388 3788 3.210232 AGCATTGACATGGAGATGAGG 57.790 47.619 0.00 0.00 33.36 3.86
2399 4217 4.908601 TTTTCTCCTCCTAGCATTGACA 57.091 40.909 0.00 0.00 0.00 3.58
2439 4257 3.520862 CGCCCGCAATGCCATTCT 61.521 61.111 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.