Multiple sequence alignment - TraesCS1B01G242400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G242400 chr1B 100.000 4428 0 0 1 4428 429979909 429975482 0.000000e+00 8178
1 TraesCS1B01G242400 chr1B 94.092 457 26 1 2384 2840 16228489 16228944 0.000000e+00 693
2 TraesCS1B01G242400 chr1B 90.159 315 29 2 2889 3203 16228957 16229269 4.120000e-110 409
3 TraesCS1B01G242400 chr1B 91.204 216 13 2 993 1208 429768072 429767863 5.600000e-74 289
4 TraesCS1B01G242400 chr1D 90.126 2846 173 42 69 2840 318164853 318162042 0.000000e+00 3600
5 TraesCS1B01G242400 chr1D 90.332 993 56 16 2890 3874 318162028 318161068 0.000000e+00 1266
6 TraesCS1B01G242400 chr1D 86.492 533 50 15 2891 3413 317996685 317996165 2.310000e-157 566
7 TraesCS1B01G242400 chr1D 78.510 349 52 15 3091 3421 318124803 318124460 1.610000e-49 207
8 TraesCS1B01G242400 chr1A 87.954 1569 136 31 2889 4425 399472198 399470651 0.000000e+00 1801
9 TraesCS1B01G242400 chr1A 89.197 722 50 9 2129 2840 399472906 399472203 0.000000e+00 876
10 TraesCS1B01G242400 chr1A 80.160 1003 88 41 427 1392 399474507 399473579 0.000000e+00 647
11 TraesCS1B01G242400 chr1A 86.417 508 28 17 1435 1930 399473581 399473103 6.570000e-143 518
12 TraesCS1B01G242400 chr1A 88.889 216 18 2 993 1208 399232267 399232058 1.220000e-65 261
13 TraesCS1B01G242400 chr1A 88.889 216 18 3 993 1208 399245930 399245721 1.220000e-65 261
14 TraesCS1B01G242400 chr2D 86.355 1026 70 37 929 1930 79517172 79516193 0.000000e+00 1055
15 TraesCS1B01G242400 chr2D 94.967 457 23 0 2384 2840 79515804 79515348 0.000000e+00 717
16 TraesCS1B01G242400 chr2D 92.038 314 17 3 2896 3203 79515328 79515017 6.800000e-118 435
17 TraesCS1B01G242400 chr6D 85.965 1026 80 35 929 1930 443452772 443453757 0.000000e+00 1038
18 TraesCS1B01G242400 chr6D 85.770 1026 82 35 929 1930 443351663 443352648 0.000000e+00 1027
19 TraesCS1B01G242400 chr6D 94.530 457 25 0 2384 2840 443352837 443353293 0.000000e+00 706
20 TraesCS1B01G242400 chr6D 94.092 457 26 1 2384 2840 443453946 443454401 0.000000e+00 693
21 TraesCS1B01G242400 chr6D 90.909 319 23 4 2889 3203 443454414 443454730 1.470000e-114 424
22 TraesCS1B01G242400 chr6D 90.596 319 24 4 2889 3203 443353306 443353622 6.850000e-113 418
23 TraesCS1B01G242400 chr7A 83.723 1026 76 53 929 1930 254262081 254261123 0.000000e+00 885
24 TraesCS1B01G242400 chr7A 94.748 457 23 1 2384 2840 254260922 254260467 0.000000e+00 710
25 TraesCS1B01G242400 chr7A 91.429 315 25 2 2889 3203 254260454 254260142 8.800000e-117 431
26 TraesCS1B01G242400 chr7B 84.263 896 80 35 926 1796 623109240 623110099 0.000000e+00 817
27 TraesCS1B01G242400 chr6B 93.435 457 29 1 2384 2840 59413471 59413926 0.000000e+00 676
28 TraesCS1B01G242400 chr6B 90.159 315 29 2 2889 3203 59413939 59414251 4.120000e-110 409
29 TraesCS1B01G242400 chr6A 91.649 479 35 3 2366 2840 612595228 612595705 0.000000e+00 658
30 TraesCS1B01G242400 chr6A 91.429 315 25 2 2889 3203 612595718 612596030 8.800000e-117 431
31 TraesCS1B01G242400 chr6A 89.005 191 16 4 1741 1930 612594866 612595052 9.580000e-57 231
32 TraesCS1B01G242400 chrUn 83.429 350 31 18 1585 1930 479154856 479154530 2.590000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G242400 chr1B 429975482 429979909 4427 True 8178.000000 8178 100.000000 1 4428 1 chr1B.!!$R2 4427
1 TraesCS1B01G242400 chr1B 16228489 16229269 780 False 551.000000 693 92.125500 2384 3203 2 chr1B.!!$F1 819
2 TraesCS1B01G242400 chr1D 318161068 318164853 3785 True 2433.000000 3600 90.229000 69 3874 2 chr1D.!!$R3 3805
3 TraesCS1B01G242400 chr1D 317996165 317996685 520 True 566.000000 566 86.492000 2891 3413 1 chr1D.!!$R1 522
4 TraesCS1B01G242400 chr1A 399470651 399474507 3856 True 960.500000 1801 85.932000 427 4425 4 chr1A.!!$R3 3998
5 TraesCS1B01G242400 chr2D 79515017 79517172 2155 True 735.666667 1055 91.120000 929 3203 3 chr2D.!!$R1 2274
6 TraesCS1B01G242400 chr6D 443452772 443454730 1958 False 718.333333 1038 90.322000 929 3203 3 chr6D.!!$F2 2274
7 TraesCS1B01G242400 chr6D 443351663 443353622 1959 False 717.000000 1027 90.298667 929 3203 3 chr6D.!!$F1 2274
8 TraesCS1B01G242400 chr7A 254260142 254262081 1939 True 675.333333 885 89.966667 929 3203 3 chr7A.!!$R1 2274
9 TraesCS1B01G242400 chr7B 623109240 623110099 859 False 817.000000 817 84.263000 926 1796 1 chr7B.!!$F1 870
10 TraesCS1B01G242400 chr6B 59413471 59414251 780 False 542.500000 676 91.797000 2384 3203 2 chr6B.!!$F1 819
11 TraesCS1B01G242400 chr6A 612594866 612596030 1164 False 440.000000 658 90.694333 1741 3203 3 chr6A.!!$F1 1462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 748 0.242017 GCAATCCTCGCTTGCTGTTT 59.758 50.0 0.68 0.0 44.36 2.83 F
1407 1494 0.108329 TCGAGAGGCGGAATTGGTTC 60.108 55.0 0.00 0.0 41.33 3.62 F
2841 3268 0.249676 TCGTCGTGAGGAGACTAGCT 59.750 55.0 0.00 0.0 44.43 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2607 0.107703 TTGCGGGGAGTGACATGATC 60.108 55.0 0.00 0.0 0.0 2.92 R
2845 3272 0.179073 GAGGCATGTGCTGTCGGTAT 60.179 55.0 4.84 0.0 41.7 2.73 R
3737 4188 0.109086 ACGAGAGACATGCAAGACGG 60.109 55.0 0.00 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.745590 ACAACAAAGAAATATTGTATACACCCC 58.254 33.333 4.68 0.00 39.98 4.95
28 29 8.744652 CAACAAAGAAATATTGTATACACCCCA 58.255 33.333 4.68 0.00 39.98 4.96
29 30 8.887264 ACAAAGAAATATTGTATACACCCCAA 57.113 30.769 4.68 0.00 39.14 4.12
30 31 8.966868 ACAAAGAAATATTGTATACACCCCAAG 58.033 33.333 4.68 0.00 39.14 3.61
31 32 9.184523 CAAAGAAATATTGTATACACCCCAAGA 57.815 33.333 4.68 0.00 0.00 3.02
32 33 9.936329 AAAGAAATATTGTATACACCCCAAGAT 57.064 29.630 4.68 0.00 0.00 2.40
40 41 9.847224 ATTGTATACACCCCAAGATACTTAAAG 57.153 33.333 4.68 0.00 0.00 1.85
41 42 8.612486 TGTATACACCCCAAGATACTTAAAGA 57.388 34.615 0.08 0.00 0.00 2.52
42 43 9.049050 TGTATACACCCCAAGATACTTAAAGAA 57.951 33.333 0.08 0.00 0.00 2.52
43 44 9.543783 GTATACACCCCAAGATACTTAAAGAAG 57.456 37.037 0.00 0.00 38.76 2.85
44 45 6.697641 ACACCCCAAGATACTTAAAGAAGA 57.302 37.500 0.00 0.00 36.45 2.87
45 46 6.712276 ACACCCCAAGATACTTAAAGAAGAG 58.288 40.000 0.00 0.00 36.45 2.85
46 47 6.116126 CACCCCAAGATACTTAAAGAAGAGG 58.884 44.000 0.00 0.00 36.45 3.69
47 48 6.030082 ACCCCAAGATACTTAAAGAAGAGGA 58.970 40.000 0.00 0.00 36.45 3.71
48 49 6.504279 ACCCCAAGATACTTAAAGAAGAGGAA 59.496 38.462 0.00 0.00 36.45 3.36
49 50 7.051000 CCCCAAGATACTTAAAGAAGAGGAAG 58.949 42.308 0.00 0.00 36.45 3.46
50 51 7.092846 CCCCAAGATACTTAAAGAAGAGGAAGA 60.093 40.741 0.00 0.00 36.45 2.87
51 52 8.322091 CCCAAGATACTTAAAGAAGAGGAAGAA 58.678 37.037 0.00 0.00 36.45 2.52
52 53 9.726438 CCAAGATACTTAAAGAAGAGGAAGAAA 57.274 33.333 0.00 0.00 36.45 2.52
63 64 9.853177 AAAGAAGAGGAAGAAACAAATAAGAGA 57.147 29.630 0.00 0.00 0.00 3.10
64 65 9.853177 AAGAAGAGGAAGAAACAAATAAGAGAA 57.147 29.630 0.00 0.00 0.00 2.87
65 66 9.278978 AGAAGAGGAAGAAACAAATAAGAGAAC 57.721 33.333 0.00 0.00 0.00 3.01
66 67 8.980481 AAGAGGAAGAAACAAATAAGAGAACA 57.020 30.769 0.00 0.00 0.00 3.18
67 68 9.579932 AAGAGGAAGAAACAAATAAGAGAACAT 57.420 29.630 0.00 0.00 0.00 2.71
72 73 9.483062 GAAGAAACAAATAAGAGAACATGATCG 57.517 33.333 0.00 0.00 0.00 3.69
75 76 6.910536 ACAAATAAGAGAACATGATCGACC 57.089 37.500 0.00 0.00 0.00 4.79
78 79 3.961480 AAGAGAACATGATCGACCACA 57.039 42.857 0.00 0.00 0.00 4.17
83 84 5.812642 AGAGAACATGATCGACCACAAATAC 59.187 40.000 0.00 0.00 0.00 1.89
95 96 5.499652 CGACCACAAATACTTTACGATTCCG 60.500 44.000 0.00 0.00 42.50 4.30
108 109 1.252015 CGATTCCGCGACGTTAAAGAG 59.748 52.381 8.23 0.00 0.00 2.85
109 110 1.587034 GATTCCGCGACGTTAAAGAGG 59.413 52.381 8.23 0.00 0.00 3.69
110 111 1.010419 TTCCGCGACGTTAAAGAGGC 61.010 55.000 8.23 0.00 0.00 4.70
118 122 2.678336 GACGTTAAAGAGGCATCAAGGG 59.322 50.000 0.00 0.00 0.00 3.95
120 124 2.678336 CGTTAAAGAGGCATCAAGGGAC 59.322 50.000 0.00 0.00 0.00 4.46
126 130 3.891049 AGAGGCATCAAGGGACATAAAC 58.109 45.455 0.00 0.00 0.00 2.01
134 138 4.013728 TCAAGGGACATAAACCAAATCCG 58.986 43.478 0.00 0.00 0.00 4.18
135 139 2.375146 AGGGACATAAACCAAATCCGC 58.625 47.619 0.00 0.00 0.00 5.54
136 140 1.407618 GGGACATAAACCAAATCCGCC 59.592 52.381 0.00 0.00 0.00 6.13
141 145 3.945285 ACATAAACCAAATCCGCCTGTAG 59.055 43.478 0.00 0.00 0.00 2.74
143 147 3.366052 AAACCAAATCCGCCTGTAGAT 57.634 42.857 0.00 0.00 0.00 1.98
145 149 1.134098 ACCAAATCCGCCTGTAGATGG 60.134 52.381 0.00 0.00 0.00 3.51
146 150 1.597742 CAAATCCGCCTGTAGATGGG 58.402 55.000 0.00 0.00 0.00 4.00
151 155 2.522185 TCCGCCTGTAGATGGGTATAC 58.478 52.381 0.00 0.00 0.00 1.47
155 159 4.464951 CCGCCTGTAGATGGGTATACATTA 59.535 45.833 5.01 0.00 32.11 1.90
170 174 8.293867 GGGTATACATTATTAAGATTTTGCGCA 58.706 33.333 5.66 5.66 0.00 6.09
180 184 8.931385 ATTAAGATTTTGCGCAACATATTCTT 57.069 26.923 26.87 24.80 35.49 2.52
232 236 0.947244 AGCAAAGACGCTTGTTGGAG 59.053 50.000 0.00 0.00 39.99 3.86
254 259 3.096092 ACAAAAGTTCAGCAAGACCCAA 58.904 40.909 0.00 0.00 0.00 4.12
263 268 2.293399 CAGCAAGACCCAAAACTACACC 59.707 50.000 0.00 0.00 0.00 4.16
284 290 1.392710 ATCCGTTCTACTGGGCTCGG 61.393 60.000 0.00 0.00 39.40 4.63
326 332 3.281395 TCGACGTCGGTCTGTGCA 61.281 61.111 35.05 12.79 41.16 4.57
330 336 1.344942 GACGTCGGTCTGTGCACATC 61.345 60.000 22.00 16.00 40.15 3.06
407 414 4.498520 CACGCACTCGCCGAGGAT 62.499 66.667 19.61 0.00 39.84 3.24
418 425 3.967335 CGAGGATCCGTCCCGCTC 61.967 72.222 5.98 0.00 46.34 5.03
419 426 3.607661 GAGGATCCGTCCCGCTCC 61.608 72.222 5.98 0.00 46.34 4.70
464 471 0.526096 GCTGTGTTGTGTTGCTGTGG 60.526 55.000 0.00 0.00 0.00 4.17
505 512 4.626081 ACACCGTGTGGCTGCCTC 62.626 66.667 21.03 17.16 39.70 4.70
541 569 0.670162 GCATGGTGTGTGTGAGCTTT 59.330 50.000 0.00 0.00 0.00 3.51
625 660 2.443255 ACTTCACCTCCACCACAATTCT 59.557 45.455 0.00 0.00 0.00 2.40
631 666 0.762418 TCCACCACAATTCTCACGGT 59.238 50.000 0.00 0.00 0.00 4.83
700 742 0.392193 AGTCCAGCAATCCTCGCTTG 60.392 55.000 0.00 0.00 37.72 4.01
706 748 0.242017 GCAATCCTCGCTTGCTGTTT 59.758 50.000 0.68 0.00 44.36 2.83
709 751 1.731720 ATCCTCGCTTGCTGTTTCTC 58.268 50.000 0.00 0.00 0.00 2.87
714 756 0.519077 CGCTTGCTGTTTCTCCTTCC 59.481 55.000 0.00 0.00 0.00 3.46
719 761 1.490490 TGCTGTTTCTCCTTCCACACT 59.510 47.619 0.00 0.00 0.00 3.55
828 881 2.240162 ATCCAGGAGAAACGGCCGAC 62.240 60.000 35.90 21.74 0.00 4.79
856 913 3.434940 TCTCCCAAGCTAAAGAAACCC 57.565 47.619 0.00 0.00 0.00 4.11
951 1020 2.115427 GAAGGAGGAGGAGGAAGAAGG 58.885 57.143 0.00 0.00 0.00 3.46
961 1030 4.090819 AGGAGGAAGAAGGTTCTCTGTAC 58.909 47.826 0.00 0.00 36.28 2.90
962 1031 4.090819 GGAGGAAGAAGGTTCTCTGTACT 58.909 47.826 0.00 0.00 36.28 2.73
963 1032 4.081917 GGAGGAAGAAGGTTCTCTGTACTG 60.082 50.000 0.00 0.00 36.28 2.74
964 1033 4.742012 AGGAAGAAGGTTCTCTGTACTGA 58.258 43.478 2.21 2.21 36.28 3.41
965 1034 5.337788 AGGAAGAAGGTTCTCTGTACTGAT 58.662 41.667 2.62 0.00 36.28 2.90
966 1035 5.420739 AGGAAGAAGGTTCTCTGTACTGATC 59.579 44.000 2.62 0.00 36.28 2.92
968 1037 4.590918 AGAAGGTTCTCTGTACTGATCGA 58.409 43.478 2.62 0.00 29.94 3.59
969 1038 4.638421 AGAAGGTTCTCTGTACTGATCGAG 59.362 45.833 2.62 0.00 29.94 4.04
970 1039 4.223556 AGGTTCTCTGTACTGATCGAGA 57.776 45.455 2.62 0.08 0.00 4.04
971 1040 4.196193 AGGTTCTCTGTACTGATCGAGAG 58.804 47.826 2.62 1.35 34.37 3.20
972 1041 3.242936 GGTTCTCTGTACTGATCGAGAGC 60.243 52.174 2.62 4.53 34.37 4.09
973 1042 2.205911 TCTCTGTACTGATCGAGAGCG 58.794 52.381 2.62 0.00 33.35 5.03
1256 1330 1.671328 CTTGCTCTCTGATGCATGTGG 59.329 52.381 2.46 0.00 39.07 4.17
1271 1345 4.082300 TGCATGTGGATGAATTTTTACGCT 60.082 37.500 0.00 0.00 0.00 5.07
1272 1346 4.266029 GCATGTGGATGAATTTTTACGCTG 59.734 41.667 0.00 0.00 0.00 5.18
1273 1347 4.433186 TGTGGATGAATTTTTACGCTGG 57.567 40.909 0.00 0.00 0.00 4.85
1274 1348 3.823873 TGTGGATGAATTTTTACGCTGGT 59.176 39.130 0.00 0.00 0.00 4.00
1275 1349 4.279671 TGTGGATGAATTTTTACGCTGGTT 59.720 37.500 0.00 0.00 0.00 3.67
1276 1350 5.473846 TGTGGATGAATTTTTACGCTGGTTA 59.526 36.000 0.00 0.00 0.00 2.85
1277 1351 6.016192 TGTGGATGAATTTTTACGCTGGTTAA 60.016 34.615 0.00 0.00 0.00 2.01
1397 1484 0.452184 TTTCTGCTACTCGAGAGGCG 59.548 55.000 21.68 16.55 42.69 5.52
1401 1488 0.752009 TGCTACTCGAGAGGCGGAAT 60.752 55.000 21.68 0.00 41.33 3.01
1402 1489 0.386113 GCTACTCGAGAGGCGGAATT 59.614 55.000 21.68 0.00 41.33 2.17
1407 1494 0.108329 TCGAGAGGCGGAATTGGTTC 60.108 55.000 0.00 0.00 41.33 3.62
1409 1496 1.136305 CGAGAGGCGGAATTGGTTCTA 59.864 52.381 0.00 0.00 34.68 2.10
1410 1497 2.418197 CGAGAGGCGGAATTGGTTCTAA 60.418 50.000 0.00 0.00 34.68 2.10
1411 1498 3.606687 GAGAGGCGGAATTGGTTCTAAA 58.393 45.455 0.00 0.00 34.68 1.85
1430 1517 6.009589 TCTAAAAATTGTGGCCAAGATGAGA 58.990 36.000 7.24 0.00 33.17 3.27
1609 1700 0.250166 CCGTCTCCCTCCGTTGTTTT 60.250 55.000 0.00 0.00 0.00 2.43
1667 1759 2.944349 GGTTCAGTTCGGTTTTGTGGTA 59.056 45.455 0.00 0.00 0.00 3.25
1674 1766 4.687483 AGTTCGGTTTTGTGGTAGTATTCG 59.313 41.667 0.00 0.00 0.00 3.34
1811 1917 6.429151 TCCTGTAGTACTAGTATCTGCCAAA 58.571 40.000 5.75 0.00 0.00 3.28
1814 1920 7.707035 CCTGTAGTACTAGTATCTGCCAAAAAG 59.293 40.741 5.75 3.02 0.00 2.27
1846 1953 2.662791 CGTGTCTTGATTTGTTGGAGCG 60.663 50.000 0.00 0.00 0.00 5.03
1881 2002 4.884164 GGGTTTCTTGGTATCTGAATCCAG 59.116 45.833 0.00 0.00 41.74 3.86
1900 2021 4.074970 CCAGAGTTGCTTTGGACAGTTAT 58.925 43.478 0.00 0.00 37.88 1.89
1901 2022 5.012664 TCCAGAGTTGCTTTGGACAGTTATA 59.987 40.000 4.54 0.00 39.39 0.98
1909 2030 5.830991 TGCTTTGGACAGTTATAAACACCTT 59.169 36.000 0.00 0.00 0.00 3.50
2051 2426 6.455360 AGTTATCGGGTTAGAAATACGTCA 57.545 37.500 0.00 0.00 0.00 4.35
2056 2431 3.488310 CGGGTTAGAAATACGTCAATCGG 59.512 47.826 0.00 0.00 44.69 4.18
2084 2459 7.554959 AGAAATAGACACTCCCTTAAACTGA 57.445 36.000 0.00 0.00 0.00 3.41
2106 2481 6.688578 TGAACTAGATTAGAAACACGAGCTT 58.311 36.000 0.00 0.00 0.00 3.74
2132 2546 5.957842 TGACTATTCAGTTCCGCAAAAAT 57.042 34.783 0.00 0.00 34.21 1.82
2144 2558 1.984990 CGCAAAAATGGACAACGATGG 59.015 47.619 0.00 0.00 0.00 3.51
2161 2575 1.327303 TGGCCTACCAGCACAAAAAG 58.673 50.000 3.32 0.00 42.67 2.27
2163 2577 1.616159 GCCTACCAGCACAAAAAGGA 58.384 50.000 0.00 0.00 0.00 3.36
2184 2598 1.447317 CGGCTGGTTCAGTTGCTTGT 61.447 55.000 0.00 0.00 33.43 3.16
2185 2599 0.312102 GGCTGGTTCAGTTGCTTGTC 59.688 55.000 0.00 0.00 33.43 3.18
2193 2607 4.214437 GTTCAGTTGCTTGTCTCAATTCG 58.786 43.478 0.00 0.00 0.00 3.34
2252 2666 2.518949 CACGCCGAAATCTTGGATTTG 58.481 47.619 9.78 3.84 0.00 2.32
2253 2667 2.095263 CACGCCGAAATCTTGGATTTGT 60.095 45.455 9.78 0.50 0.00 2.83
2259 2673 6.099341 GCCGAAATCTTGGATTTGTATTTGT 58.901 36.000 9.78 0.00 0.00 2.83
2291 2715 2.723124 ATTTGCACCCATCGTTTCAC 57.277 45.000 0.00 0.00 0.00 3.18
2295 2719 2.627945 TGCACCCATCGTTTCACTATC 58.372 47.619 0.00 0.00 0.00 2.08
2299 2723 4.503910 CACCCATCGTTTCACTATCTTCA 58.496 43.478 0.00 0.00 0.00 3.02
2304 2728 6.238484 CCCATCGTTTCACTATCTTCATTTCC 60.238 42.308 0.00 0.00 0.00 3.13
2314 2738 7.923344 TCACTATCTTCATTTCCTCTCGATTTC 59.077 37.037 0.00 0.00 0.00 2.17
2592 3016 1.118965 TGCCAGTTCGACCTCCTGAA 61.119 55.000 0.00 0.00 0.00 3.02
2832 3259 1.136147 CCCGTAAGTCGTCGTGAGG 59.864 63.158 0.00 0.00 37.94 3.86
2840 3267 0.374410 GTCGTCGTGAGGAGACTAGC 59.626 60.000 0.00 0.00 44.43 3.42
2841 3268 0.249676 TCGTCGTGAGGAGACTAGCT 59.750 55.000 0.00 0.00 44.43 3.32
2842 3269 1.479730 TCGTCGTGAGGAGACTAGCTA 59.520 52.381 0.00 0.00 44.43 3.32
2843 3270 1.862201 CGTCGTGAGGAGACTAGCTAG 59.138 57.143 19.44 19.44 44.43 3.42
2844 3271 2.481622 CGTCGTGAGGAGACTAGCTAGA 60.482 54.545 27.45 0.00 44.43 2.43
2845 3272 3.533547 GTCGTGAGGAGACTAGCTAGAA 58.466 50.000 27.45 1.04 44.43 2.10
2846 3273 4.131596 GTCGTGAGGAGACTAGCTAGAAT 58.868 47.826 27.45 14.38 44.43 2.40
2847 3274 5.299148 GTCGTGAGGAGACTAGCTAGAATA 58.701 45.833 27.45 3.51 44.43 1.75
2848 3275 5.178067 GTCGTGAGGAGACTAGCTAGAATAC 59.822 48.000 27.45 14.87 44.43 1.89
2849 3276 4.453136 CGTGAGGAGACTAGCTAGAATACC 59.547 50.000 27.45 20.84 44.43 2.73
2850 3277 4.453136 GTGAGGAGACTAGCTAGAATACCG 59.547 50.000 27.45 0.00 44.43 4.02
2851 3278 4.347292 TGAGGAGACTAGCTAGAATACCGA 59.653 45.833 27.45 12.53 44.43 4.69
2852 3279 4.644498 AGGAGACTAGCTAGAATACCGAC 58.356 47.826 27.45 8.47 40.61 4.79
2853 3280 4.102838 AGGAGACTAGCTAGAATACCGACA 59.897 45.833 27.45 0.00 40.61 4.35
2854 3281 4.453136 GGAGACTAGCTAGAATACCGACAG 59.547 50.000 27.45 0.00 0.00 3.51
2855 3282 3.816523 AGACTAGCTAGAATACCGACAGC 59.183 47.826 27.45 2.07 0.00 4.40
2856 3283 3.552875 ACTAGCTAGAATACCGACAGCA 58.447 45.455 27.45 0.00 34.65 4.41
2857 3284 2.873133 AGCTAGAATACCGACAGCAC 57.127 50.000 0.00 0.00 34.65 4.40
2858 3285 2.100197 AGCTAGAATACCGACAGCACA 58.900 47.619 0.00 0.00 34.65 4.57
2859 3286 2.695666 AGCTAGAATACCGACAGCACAT 59.304 45.455 0.00 0.00 34.65 3.21
2860 3287 2.797156 GCTAGAATACCGACAGCACATG 59.203 50.000 0.00 0.00 32.46 3.21
2861 3288 1.656652 AGAATACCGACAGCACATGC 58.343 50.000 0.00 0.00 42.49 4.06
2862 3289 0.657840 GAATACCGACAGCACATGCC 59.342 55.000 0.00 0.00 43.38 4.40
2863 3290 0.253044 AATACCGACAGCACATGCCT 59.747 50.000 0.00 0.00 43.38 4.75
2864 3291 0.179073 ATACCGACAGCACATGCCTC 60.179 55.000 0.00 0.00 43.38 4.70
2865 3292 1.540435 TACCGACAGCACATGCCTCA 61.540 55.000 0.00 0.00 43.38 3.86
2866 3293 2.393768 CCGACAGCACATGCCTCAC 61.394 63.158 0.00 0.00 43.38 3.51
2867 3294 2.733671 CGACAGCACATGCCTCACG 61.734 63.158 0.00 0.00 43.38 4.35
2868 3295 3.031964 GACAGCACATGCCTCACGC 62.032 63.158 0.00 0.00 43.38 5.34
2883 3310 2.323105 CGCACGCGTGTTCTTGTT 59.677 55.556 36.80 0.00 34.35 2.83
2884 3311 1.297304 CGCACGCGTGTTCTTGTTT 60.297 52.632 36.80 0.00 34.35 2.83
2885 3312 1.520133 CGCACGCGTGTTCTTGTTTG 61.520 55.000 36.80 11.28 34.35 2.93
2886 3313 1.199852 GCACGCGTGTTCTTGTTTGG 61.200 55.000 36.80 10.68 0.00 3.28
2887 3314 0.591236 CACGCGTGTTCTTGTTTGGG 60.591 55.000 30.50 0.00 0.00 4.12
2893 3328 2.482864 GTGTTCTTGTTTGGGCCATTG 58.517 47.619 7.26 0.00 0.00 2.82
3170 3616 4.842091 CCGACGGGGTAAGCGACG 62.842 72.222 5.81 0.00 0.00 5.12
3185 3631 1.069906 GCGACGAATTCTTGCACAGTT 60.070 47.619 0.00 0.00 0.00 3.16
3191 3637 6.400621 CGACGAATTCTTGCACAGTTACATAA 60.401 38.462 3.52 0.00 0.00 1.90
3192 3638 7.197071 ACGAATTCTTGCACAGTTACATAAA 57.803 32.000 3.52 0.00 0.00 1.40
3193 3639 7.298122 ACGAATTCTTGCACAGTTACATAAAG 58.702 34.615 3.52 0.00 0.00 1.85
3194 3640 7.172532 ACGAATTCTTGCACAGTTACATAAAGA 59.827 33.333 3.52 0.00 0.00 2.52
3421 3867 4.243008 TTCTTCCACACGCCGGCA 62.243 61.111 28.98 1.46 0.00 5.69
3440 3886 2.437897 CCTGAACAAGCTGCCCCT 59.562 61.111 0.00 0.00 0.00 4.79
3441 3887 1.685224 CCTGAACAAGCTGCCCCTA 59.315 57.895 0.00 0.00 0.00 3.53
3442 3888 0.393537 CCTGAACAAGCTGCCCCTAG 60.394 60.000 0.00 0.00 0.00 3.02
3443 3889 0.615331 CTGAACAAGCTGCCCCTAGA 59.385 55.000 0.00 0.00 0.00 2.43
3444 3890 0.615331 TGAACAAGCTGCCCCTAGAG 59.385 55.000 0.00 0.00 0.00 2.43
3445 3891 0.107459 GAACAAGCTGCCCCTAGAGG 60.107 60.000 0.00 0.00 0.00 3.69
3473 3919 1.368345 CGATTGCATTGCCGTCAGGA 61.368 55.000 6.12 0.00 41.02 3.86
3486 3932 1.535444 TCAGGACGAGGGGAAAGCA 60.535 57.895 0.00 0.00 0.00 3.91
3510 3956 0.535335 GTCCACTTGCCGGTAGATCA 59.465 55.000 1.90 0.00 0.00 2.92
3543 3993 2.820479 CGCCGTCGGAGAGAGACT 60.820 66.667 17.49 0.00 36.95 3.24
3544 3994 2.815298 CGCCGTCGGAGAGAGACTC 61.815 68.421 17.49 0.00 44.24 3.36
3545 3995 2.815298 GCCGTCGGAGAGAGACTCG 61.815 68.421 17.49 0.00 45.76 4.18
3546 3996 1.448189 CCGTCGGAGAGAGACTCGT 60.448 63.158 4.91 0.00 45.76 4.18
3547 3997 1.020333 CCGTCGGAGAGAGACTCGTT 61.020 60.000 4.91 0.00 45.76 3.85
3548 3998 0.797542 CGTCGGAGAGAGACTCGTTT 59.202 55.000 0.00 0.00 45.76 3.60
3549 3999 1.201943 CGTCGGAGAGAGACTCGTTTC 60.202 57.143 0.00 0.00 45.76 2.78
3550 4000 1.077123 TCGGAGAGAGACTCGTTTCG 58.923 55.000 0.00 0.38 45.76 3.46
3622 4073 2.113986 GGTGGGTCAACTGCTGCT 59.886 61.111 0.00 0.00 0.00 4.24
3657 4108 0.542333 TGTCCTCCGGTTTTCACACA 59.458 50.000 0.00 0.00 0.00 3.72
3667 4118 1.135141 GTTTTCACACACTGCTTGCCA 60.135 47.619 0.00 0.00 0.00 4.92
3687 4138 3.930229 CCAAAATGTACGAGGATCAACGA 59.070 43.478 15.54 0.00 33.17 3.85
3689 4140 2.470196 ATGTACGAGGATCAACGACG 57.530 50.000 15.54 0.00 33.17 5.12
3696 4147 1.375523 GGATCAACGACGGCCACTT 60.376 57.895 2.24 0.00 0.00 3.16
3730 4181 1.668751 GGAACAAGACGCACTTTGTCA 59.331 47.619 0.00 0.00 38.83 3.58
3737 4188 6.142817 ACAAGACGCACTTTGTCATTATTTC 58.857 36.000 0.00 0.00 38.83 2.17
3749 4200 4.699735 TGTCATTATTTCCGTCTTGCATGT 59.300 37.500 0.00 0.00 0.00 3.21
3770 4224 0.871722 TCTCGTTGGCGTGAAAATGG 59.128 50.000 0.00 0.00 37.62 3.16
3775 4229 0.885196 TTGGCGTGAAAATGGCCTAC 59.115 50.000 3.32 0.00 46.97 3.18
3783 4237 2.832129 TGAAAATGGCCTACGAGAGACT 59.168 45.455 3.32 0.00 0.00 3.24
3784 4238 4.021229 TGAAAATGGCCTACGAGAGACTA 58.979 43.478 3.32 0.00 0.00 2.59
3786 4240 5.128827 TGAAAATGGCCTACGAGAGACTATT 59.871 40.000 3.32 0.00 0.00 1.73
3789 4243 5.906113 ATGGCCTACGAGAGACTATTATG 57.094 43.478 3.32 0.00 0.00 1.90
3790 4244 4.981812 TGGCCTACGAGAGACTATTATGA 58.018 43.478 3.32 0.00 0.00 2.15
3791 4245 5.382616 TGGCCTACGAGAGACTATTATGAA 58.617 41.667 3.32 0.00 0.00 2.57
3858 4313 8.217111 TGTTGGTATACATCAATGACCATATGT 58.783 33.333 5.01 4.44 39.83 2.29
3874 4329 6.430864 ACCATATGTCCATAAATCACACCAA 58.569 36.000 1.24 0.00 0.00 3.67
3880 4335 4.574828 GTCCATAAATCACACCAATAGCGT 59.425 41.667 0.00 0.00 0.00 5.07
3898 4353 1.975407 TGTCCTTCGGGTCCTCGTC 60.975 63.158 0.00 0.00 36.28 4.20
3921 4376 5.929992 TCGAAACGACTCATGGTTCTTAAAT 59.070 36.000 0.00 0.00 0.00 1.40
3923 4378 6.736853 CGAAACGACTCATGGTTCTTAAATTC 59.263 38.462 0.00 0.00 0.00 2.17
3926 4381 5.120208 ACGACTCATGGTTCTTAAATTCGTG 59.880 40.000 0.00 0.00 34.88 4.35
3949 4404 9.907576 CGTGAAATTACTCTGAATAGATTTCAC 57.092 33.333 21.02 21.02 45.16 3.18
3991 4446 7.889873 TTGACCAAATTTTGAGACTCCTTTA 57.110 32.000 10.72 0.00 0.00 1.85
4007 4472 8.437575 AGACTCCTTTAGAATTTAGGTTCACAA 58.562 33.333 0.00 0.00 0.00 3.33
4008 4473 8.990163 ACTCCTTTAGAATTTAGGTTCACAAA 57.010 30.769 0.00 0.00 0.00 2.83
4026 4491 9.032420 GTTCACAAAATTATAAAAACGTGGGAA 57.968 29.630 0.00 0.00 0.00 3.97
4038 4503 3.604875 ACGTGGGAATACGAAAGACAT 57.395 42.857 5.23 0.00 46.46 3.06
4046 4511 6.183361 TGGGAATACGAAAGACATGGGAATAT 60.183 38.462 0.00 0.00 0.00 1.28
4052 4517 4.512944 CGAAAGACATGGGAATATGACAGG 59.487 45.833 0.00 0.00 0.00 4.00
4061 4526 4.416513 TGGGAATATGACAGGAATGGATGT 59.583 41.667 0.00 0.00 0.00 3.06
4064 4529 1.671979 ATGACAGGAATGGATGTGCG 58.328 50.000 0.00 0.00 0.00 5.34
4065 4530 1.026182 TGACAGGAATGGATGTGCGC 61.026 55.000 0.00 0.00 0.00 6.09
4069 4534 1.226379 GGAATGGATGTGCGCAACG 60.226 57.895 14.00 0.00 0.00 4.10
4087 4558 2.006888 ACGGCGGATTGATTAACACAG 58.993 47.619 13.24 0.00 0.00 3.66
4092 4563 5.650543 GGCGGATTGATTAACACAGAAATT 58.349 37.500 0.00 0.00 0.00 1.82
4093 4564 6.457663 CGGCGGATTGATTAACACAGAAATTA 60.458 38.462 0.00 0.00 0.00 1.40
4094 4565 7.425606 GGCGGATTGATTAACACAGAAATTAT 58.574 34.615 0.00 0.00 0.00 1.28
4096 4567 7.096477 GCGGATTGATTAACACAGAAATTATGC 60.096 37.037 0.00 0.00 0.00 3.14
4100 4571 7.015226 TGATTAACACAGAAATTATGCCTCG 57.985 36.000 0.00 0.00 0.00 4.63
4102 4573 6.811253 TTAACACAGAAATTATGCCTCGTT 57.189 33.333 0.00 0.00 0.00 3.85
4103 4574 4.685169 ACACAGAAATTATGCCTCGTTG 57.315 40.909 0.00 0.00 0.00 4.10
4104 4575 4.323417 ACACAGAAATTATGCCTCGTTGA 58.677 39.130 0.00 0.00 0.00 3.18
4106 4577 5.415701 ACACAGAAATTATGCCTCGTTGATT 59.584 36.000 0.00 0.00 0.00 2.57
4107 4578 6.071952 ACACAGAAATTATGCCTCGTTGATTT 60.072 34.615 0.00 0.00 0.00 2.17
4143 4614 3.822940 ACACCGGAATAGGAAAAACACA 58.177 40.909 9.46 0.00 34.73 3.72
4149 4620 4.378046 CGGAATAGGAAAAACACAGGAACG 60.378 45.833 0.00 0.00 0.00 3.95
4152 4623 6.205270 GGAATAGGAAAAACACAGGAACGTAA 59.795 38.462 0.00 0.00 0.00 3.18
4268 4741 5.594317 CGGGAGGTTTCAATAGATGGAAAAT 59.406 40.000 0.00 0.00 35.03 1.82
4296 4769 7.918076 TCCTCAGAGTGGAGTACAAATTAATT 58.082 34.615 0.00 0.00 32.91 1.40
4328 4801 8.966155 AAAAATTCCTAAGGATTTCAACCCTA 57.034 30.769 0.00 0.00 31.36 3.53
4329 4802 8.595362 AAAATTCCTAAGGATTTCAACCCTAG 57.405 34.615 0.00 0.00 31.36 3.02
4338 4811 5.952347 AGGATTTCAACCCTAGGAATCAAAC 59.048 40.000 11.48 0.00 0.00 2.93
4339 4812 5.127194 GGATTTCAACCCTAGGAATCAAACC 59.873 44.000 11.48 1.10 0.00 3.27
4341 4814 2.907696 TCAACCCTAGGAATCAAACCGA 59.092 45.455 11.48 0.00 0.00 4.69
4347 4820 1.892209 AGGAATCAAACCGACACCAC 58.108 50.000 0.00 0.00 0.00 4.16
4354 4827 1.953686 CAAACCGACACCACAGGAAAT 59.046 47.619 0.00 0.00 0.00 2.17
4355 4828 2.358322 AACCGACACCACAGGAAATT 57.642 45.000 0.00 0.00 0.00 1.82
4356 4829 2.358322 ACCGACACCACAGGAAATTT 57.642 45.000 0.00 0.00 0.00 1.82
4365 4840 5.188751 ACACCACAGGAAATTTTTCAAAGGA 59.811 36.000 5.48 0.00 38.92 3.36
4387 4862 5.481824 GGATCCAAATCCTCCAAGAAAAACT 59.518 40.000 6.95 0.00 46.97 2.66
4389 4864 7.178451 GGATCCAAATCCTCCAAGAAAAACTTA 59.822 37.037 6.95 0.00 46.97 2.24
4392 4867 9.243105 TCCAAATCCTCCAAGAAAAACTTATAG 57.757 33.333 0.00 0.00 37.03 1.31
4398 4873 9.462606 TCCTCCAAGAAAAACTTATAGAATTCC 57.537 33.333 0.65 0.00 37.03 3.01
4425 4900 6.533730 TGAATAAAAGGAGAGCTCAACTTGA 58.466 36.000 17.77 11.18 0.00 3.02
4426 4901 6.652481 TGAATAAAAGGAGAGCTCAACTTGAG 59.348 38.462 17.77 13.68 46.90 3.02
4427 4902 4.429854 AAAAGGAGAGCTCAACTTGAGT 57.570 40.909 17.77 7.02 45.94 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.744652 TGGGGTGTATACAATATTTCTTTGTTG 58.255 33.333 7.25 0.00 38.26 3.33
3 4 8.887264 TGGGGTGTATACAATATTTCTTTGTT 57.113 30.769 7.25 0.00 38.26 2.83
4 5 8.887264 TTGGGGTGTATACAATATTTCTTTGT 57.113 30.769 7.25 0.00 40.30 2.83
5 6 9.184523 TCTTGGGGTGTATACAATATTTCTTTG 57.815 33.333 7.25 0.00 0.00 2.77
6 7 9.936329 ATCTTGGGGTGTATACAATATTTCTTT 57.064 29.630 7.25 0.00 0.00 2.52
14 15 9.847224 CTTTAAGTATCTTGGGGTGTATACAAT 57.153 33.333 7.25 0.00 0.00 2.71
15 16 9.049050 TCTTTAAGTATCTTGGGGTGTATACAA 57.951 33.333 7.25 0.00 0.00 2.41
16 17 8.612486 TCTTTAAGTATCTTGGGGTGTATACA 57.388 34.615 0.08 0.08 0.00 2.29
17 18 9.543783 CTTCTTTAAGTATCTTGGGGTGTATAC 57.456 37.037 0.00 0.00 0.00 1.47
18 19 9.496710 TCTTCTTTAAGTATCTTGGGGTGTATA 57.503 33.333 0.00 0.00 34.13 1.47
19 20 8.388656 TCTTCTTTAAGTATCTTGGGGTGTAT 57.611 34.615 0.00 0.00 34.13 2.29
20 21 7.093024 CCTCTTCTTTAAGTATCTTGGGGTGTA 60.093 40.741 0.00 0.00 34.13 2.90
21 22 6.296489 CCTCTTCTTTAAGTATCTTGGGGTGT 60.296 42.308 0.00 0.00 34.13 4.16
22 23 6.070194 TCCTCTTCTTTAAGTATCTTGGGGTG 60.070 42.308 0.00 0.00 34.13 4.61
23 24 6.030082 TCCTCTTCTTTAAGTATCTTGGGGT 58.970 40.000 0.00 0.00 34.13 4.95
24 25 6.561519 TCCTCTTCTTTAAGTATCTTGGGG 57.438 41.667 0.00 0.00 34.13 4.96
25 26 7.852263 TCTTCCTCTTCTTTAAGTATCTTGGG 58.148 38.462 0.00 0.00 34.13 4.12
26 27 9.726438 TTTCTTCCTCTTCTTTAAGTATCTTGG 57.274 33.333 0.00 0.00 34.13 3.61
37 38 9.853177 TCTCTTATTTGTTTCTTCCTCTTCTTT 57.147 29.630 0.00 0.00 0.00 2.52
38 39 9.853177 TTCTCTTATTTGTTTCTTCCTCTTCTT 57.147 29.630 0.00 0.00 0.00 2.52
39 40 9.278978 GTTCTCTTATTTGTTTCTTCCTCTTCT 57.721 33.333 0.00 0.00 0.00 2.85
40 41 9.057089 TGTTCTCTTATTTGTTTCTTCCTCTTC 57.943 33.333 0.00 0.00 0.00 2.87
41 42 8.980481 TGTTCTCTTATTTGTTTCTTCCTCTT 57.020 30.769 0.00 0.00 0.00 2.85
42 43 9.007901 CATGTTCTCTTATTTGTTTCTTCCTCT 57.992 33.333 0.00 0.00 0.00 3.69
43 44 9.003658 TCATGTTCTCTTATTTGTTTCTTCCTC 57.996 33.333 0.00 0.00 0.00 3.71
44 45 8.924511 TCATGTTCTCTTATTTGTTTCTTCCT 57.075 30.769 0.00 0.00 0.00 3.36
45 46 9.780413 GATCATGTTCTCTTATTTGTTTCTTCC 57.220 33.333 0.00 0.00 0.00 3.46
46 47 9.483062 CGATCATGTTCTCTTATTTGTTTCTTC 57.517 33.333 2.44 0.00 0.00 2.87
47 48 9.219603 TCGATCATGTTCTCTTATTTGTTTCTT 57.780 29.630 2.44 0.00 0.00 2.52
48 49 8.660373 GTCGATCATGTTCTCTTATTTGTTTCT 58.340 33.333 2.44 0.00 0.00 2.52
49 50 7.905493 GGTCGATCATGTTCTCTTATTTGTTTC 59.095 37.037 0.00 0.00 0.00 2.78
50 51 7.390440 TGGTCGATCATGTTCTCTTATTTGTTT 59.610 33.333 0.00 0.00 0.00 2.83
51 52 6.878923 TGGTCGATCATGTTCTCTTATTTGTT 59.121 34.615 0.00 0.00 0.00 2.83
52 53 6.313905 GTGGTCGATCATGTTCTCTTATTTGT 59.686 38.462 0.00 0.00 0.00 2.83
53 54 6.313658 TGTGGTCGATCATGTTCTCTTATTTG 59.686 38.462 0.00 0.00 0.00 2.32
54 55 6.406370 TGTGGTCGATCATGTTCTCTTATTT 58.594 36.000 0.00 0.00 0.00 1.40
55 56 5.977635 TGTGGTCGATCATGTTCTCTTATT 58.022 37.500 0.00 0.00 0.00 1.40
56 57 5.598416 TGTGGTCGATCATGTTCTCTTAT 57.402 39.130 0.00 0.00 0.00 1.73
57 58 5.400066 TTGTGGTCGATCATGTTCTCTTA 57.600 39.130 0.00 0.00 0.00 2.10
58 59 3.961480 TGTGGTCGATCATGTTCTCTT 57.039 42.857 0.00 0.00 0.00 2.85
59 60 3.961480 TTGTGGTCGATCATGTTCTCT 57.039 42.857 0.00 0.00 0.00 3.10
60 61 5.812642 AGTATTTGTGGTCGATCATGTTCTC 59.187 40.000 0.00 0.00 0.00 2.87
61 62 5.734720 AGTATTTGTGGTCGATCATGTTCT 58.265 37.500 0.00 0.00 0.00 3.01
62 63 6.422776 AAGTATTTGTGGTCGATCATGTTC 57.577 37.500 0.00 0.00 0.00 3.18
63 64 6.817765 AAAGTATTTGTGGTCGATCATGTT 57.182 33.333 0.00 0.00 36.60 2.71
64 65 6.035650 CGTAAAGTATTTGTGGTCGATCATGT 59.964 38.462 0.00 0.00 39.63 3.21
65 66 6.254804 TCGTAAAGTATTTGTGGTCGATCATG 59.745 38.462 0.00 0.00 39.63 3.07
66 67 6.334989 TCGTAAAGTATTTGTGGTCGATCAT 58.665 36.000 0.00 0.00 39.63 2.45
67 68 5.712004 TCGTAAAGTATTTGTGGTCGATCA 58.288 37.500 0.00 0.00 39.63 2.92
72 73 5.725864 GCGGAATCGTAAAGTATTTGTGGTC 60.726 44.000 0.00 0.00 36.23 4.02
75 76 4.031991 TCGCGGAATCGTAAAGTATTTGTG 59.968 41.667 6.13 0.00 36.23 3.33
78 79 3.241322 CGTCGCGGAATCGTAAAGTATTT 59.759 43.478 6.13 0.00 38.36 1.40
83 84 0.986992 AACGTCGCGGAATCGTAAAG 59.013 50.000 6.13 0.00 36.80 1.85
95 96 1.355971 TGATGCCTCTTTAACGTCGC 58.644 50.000 0.00 0.00 0.00 5.19
108 109 2.733956 TGGTTTATGTCCCTTGATGCC 58.266 47.619 0.00 0.00 0.00 4.40
109 110 4.799564 TTTGGTTTATGTCCCTTGATGC 57.200 40.909 0.00 0.00 0.00 3.91
110 111 5.450412 CGGATTTGGTTTATGTCCCTTGATG 60.450 44.000 0.00 0.00 0.00 3.07
118 122 2.752903 ACAGGCGGATTTGGTTTATGTC 59.247 45.455 0.00 0.00 0.00 3.06
120 124 4.196193 TCTACAGGCGGATTTGGTTTATG 58.804 43.478 0.00 0.00 0.00 1.90
126 130 1.597742 CCATCTACAGGCGGATTTGG 58.402 55.000 0.00 0.00 0.00 3.28
134 138 9.601217 CTTAATAATGTATACCCATCTACAGGC 57.399 37.037 0.00 0.00 31.79 4.85
143 147 8.293867 GCGCAAAATCTTAATAATGTATACCCA 58.706 33.333 0.30 0.00 0.00 4.51
145 149 9.672086 TTGCGCAAAATCTTAATAATGTATACC 57.328 29.630 22.78 0.00 0.00 2.73
155 159 8.931385 AAGAATATGTTGCGCAAAATCTTAAT 57.069 26.923 28.52 14.16 29.99 1.40
166 170 9.377383 ACGTAATAAATAAAGAATATGTTGCGC 57.623 29.630 0.00 0.00 0.00 6.09
195 199 2.092968 TGCTTGCTATCTTTGGGACGAT 60.093 45.455 0.00 0.00 0.00 3.73
229 233 3.003793 GGTCTTGCTGAACTTTTGTCTCC 59.996 47.826 0.00 0.00 0.00 3.71
232 236 2.687935 TGGGTCTTGCTGAACTTTTGTC 59.312 45.455 0.00 0.00 31.77 3.18
238 243 3.018423 AGTTTTGGGTCTTGCTGAACT 57.982 42.857 0.00 0.00 31.77 3.01
254 259 3.836562 AGTAGAACGGATGGGTGTAGTTT 59.163 43.478 0.00 0.00 0.00 2.66
263 268 0.105039 GAGCCCAGTAGAACGGATGG 59.895 60.000 0.00 0.00 0.00 3.51
343 349 1.879380 TGTGGATAAGCAGTTGTGTGC 59.121 47.619 0.00 0.00 44.35 4.57
350 357 1.831106 TGGTCGATGTGGATAAGCAGT 59.169 47.619 0.00 0.00 0.00 4.40
382 389 3.458579 CGAGTGCGTGTTCCGTCG 61.459 66.667 0.00 0.00 39.32 5.12
436 443 4.993945 CAACACAGCGACGCGTGC 62.994 66.667 30.49 20.88 36.88 5.34
442 449 0.589729 CAGCAACACAACACAGCGAC 60.590 55.000 0.00 0.00 0.00 5.19
625 660 3.881019 AAGGGAGGCGAGACCGTGA 62.881 63.158 0.00 0.00 46.52 4.35
648 683 1.032114 CGATGAACAAGGGAAGGGGC 61.032 60.000 0.00 0.00 0.00 5.80
655 694 2.106683 GGCGACCGATGAACAAGGG 61.107 63.158 0.00 0.00 0.00 3.95
700 742 2.262423 AGTGTGGAAGGAGAAACAGC 57.738 50.000 0.00 0.00 0.00 4.40
706 748 3.318313 AGGAAGAAAGTGTGGAAGGAGA 58.682 45.455 0.00 0.00 0.00 3.71
709 751 2.887152 CCAAGGAAGAAAGTGTGGAAGG 59.113 50.000 0.00 0.00 0.00 3.46
714 756 3.947834 ACTTCACCAAGGAAGAAAGTGTG 59.052 43.478 9.67 0.00 45.66 3.82
719 761 6.248569 ACTTCTACTTCACCAAGGAAGAAA 57.751 37.500 9.67 1.49 45.66 2.52
850 907 2.750166 GCTAAGAAGGAAGCAGGGTTTC 59.250 50.000 0.00 0.00 38.63 2.78
856 913 2.903798 CAGAGGCTAAGAAGGAAGCAG 58.096 52.381 0.00 0.00 40.61 4.24
951 1020 3.545228 CGCTCTCGATCAGTACAGAGAAC 60.545 52.174 9.25 3.79 39.00 3.01
980 1053 3.610040 TTCTCGCTAGCCAAGATCAAA 57.390 42.857 9.66 0.00 0.00 2.69
1219 1293 0.322366 AAGCAGGGAAGAAGCAGAGC 60.322 55.000 0.00 0.00 0.00 4.09
1256 1330 7.033185 ACCATTAACCAGCGTAAAAATTCATC 58.967 34.615 0.00 0.00 0.00 2.92
1276 1350 8.902806 CACCAGTAATATGTTGTGATAACCATT 58.097 33.333 0.00 0.00 0.00 3.16
1277 1351 7.502226 CCACCAGTAATATGTTGTGATAACCAT 59.498 37.037 0.00 0.00 0.00 3.55
1298 1372 0.753867 TCTTTGACTACACGCCACCA 59.246 50.000 0.00 0.00 0.00 4.17
1397 1484 5.411361 GGCCACAATTTTTAGAACCAATTCC 59.589 40.000 0.00 0.00 35.18 3.01
1401 1488 5.129485 TCTTGGCCACAATTTTTAGAACCAA 59.871 36.000 3.88 0.00 35.73 3.67
1402 1489 4.651503 TCTTGGCCACAATTTTTAGAACCA 59.348 37.500 3.88 0.00 35.73 3.67
1407 1494 6.095377 GTCTCATCTTGGCCACAATTTTTAG 58.905 40.000 3.88 0.00 35.73 1.85
1409 1496 4.559300 CGTCTCATCTTGGCCACAATTTTT 60.559 41.667 3.88 0.00 35.73 1.94
1410 1497 3.057315 CGTCTCATCTTGGCCACAATTTT 60.057 43.478 3.88 0.00 35.73 1.82
1411 1498 2.489329 CGTCTCATCTTGGCCACAATTT 59.511 45.455 3.88 0.00 35.73 1.82
1430 1517 1.816863 AACAGAGACCATGTCGCCGT 61.817 55.000 0.00 0.00 37.67 5.68
1569 1660 7.880195 AGACGGGATCCAATCTCTATTTTATTG 59.120 37.037 15.23 0.00 0.00 1.90
1635 1727 3.368843 CCGAACTGAACCATCTCACTCAT 60.369 47.826 0.00 0.00 0.00 2.90
1667 1759 3.975168 AGTTTGGCTGTACCGAATACT 57.025 42.857 0.00 0.00 44.05 2.12
1674 1766 5.813080 CCTAACAATAGTTTGGCTGTACC 57.187 43.478 0.00 0.00 42.22 3.34
1811 1917 2.537143 AGACACGTACCATCCCTCTTT 58.463 47.619 0.00 0.00 0.00 2.52
1814 1920 1.822990 TCAAGACACGTACCATCCCTC 59.177 52.381 0.00 0.00 0.00 4.30
1846 1953 4.188462 CCAAGAAACCCAACACCTTTTTC 58.812 43.478 0.00 0.00 0.00 2.29
1881 2002 6.856426 GTGTTTATAACTGTCCAAAGCAACTC 59.144 38.462 0.00 0.00 0.00 3.01
1900 2021 6.293516 CGCAACCAGTATGTTTAAGGTGTTTA 60.294 38.462 0.00 0.00 31.86 2.01
1901 2022 5.506649 CGCAACCAGTATGTTTAAGGTGTTT 60.507 40.000 0.00 0.00 31.86 2.83
1909 2030 3.936453 GACCATCGCAACCAGTATGTTTA 59.064 43.478 0.00 0.00 0.00 2.01
1920 2041 2.676076 AGCAAATTTGACCATCGCAAC 58.324 42.857 22.31 0.00 0.00 4.17
2020 2395 5.490139 TCTAACCCGATAACTTACTGTCG 57.510 43.478 0.00 0.00 0.00 4.35
2051 2426 5.453480 GGGAGTGTCTATTTCTAAGCCGATT 60.453 44.000 0.00 0.00 0.00 3.34
2056 2431 8.041919 AGTTTAAGGGAGTGTCTATTTCTAAGC 58.958 37.037 0.00 0.00 0.00 3.09
2084 2459 9.654663 AAATAAGCTCGTGTTTCTAATCTAGTT 57.345 29.630 0.00 0.00 0.00 2.24
2106 2481 7.441890 TTTTGCGGAACTGAATAGTCAAATA 57.558 32.000 0.00 0.00 35.69 1.40
2132 2546 1.195442 TGGTAGGCCATCGTTGTCCA 61.195 55.000 5.01 0.00 40.46 4.02
2144 2558 1.269723 GTCCTTTTTGTGCTGGTAGGC 59.730 52.381 0.00 0.00 0.00 3.93
2151 2565 1.152756 AGCCGGTCCTTTTTGTGCT 60.153 52.632 1.90 0.00 0.00 4.40
2180 2594 5.579904 AGTGACATGATCGAATTGAGACAAG 59.420 40.000 0.00 0.00 0.00 3.16
2184 2598 4.442052 GGGAGTGACATGATCGAATTGAGA 60.442 45.833 0.00 0.00 0.00 3.27
2185 2599 3.806521 GGGAGTGACATGATCGAATTGAG 59.193 47.826 0.00 0.00 0.00 3.02
2193 2607 0.107703 TTGCGGGGAGTGACATGATC 60.108 55.000 0.00 0.00 0.00 2.92
2252 2666 7.116090 TGCAAATTTACTGTGCATGACAAATAC 59.884 33.333 0.00 0.00 43.09 1.89
2253 2667 7.150640 TGCAAATTTACTGTGCATGACAAATA 58.849 30.769 0.00 0.00 43.09 1.40
2291 2715 7.142021 TCGAAATCGAGAGGAAATGAAGATAG 58.858 38.462 0.58 0.00 44.22 2.08
2542 2966 1.298713 CTTCTCGCCGTCGATGAGG 60.299 63.158 6.11 3.04 44.56 3.86
2592 3016 3.077556 CGGCCAGGTAGGACTGCT 61.078 66.667 2.24 0.00 46.64 4.24
2832 3259 4.083696 GCTGTCGGTATTCTAGCTAGTCTC 60.084 50.000 20.10 9.39 0.00 3.36
2840 3267 2.797156 GCATGTGCTGTCGGTATTCTAG 59.203 50.000 0.00 0.00 38.21 2.43
2841 3268 2.483013 GGCATGTGCTGTCGGTATTCTA 60.483 50.000 4.84 0.00 41.70 2.10
2842 3269 1.656652 GCATGTGCTGTCGGTATTCT 58.343 50.000 0.00 0.00 38.21 2.40
2843 3270 0.657840 GGCATGTGCTGTCGGTATTC 59.342 55.000 4.84 0.00 41.70 1.75
2844 3271 0.253044 AGGCATGTGCTGTCGGTATT 59.747 50.000 4.84 0.00 41.70 1.89
2845 3272 0.179073 GAGGCATGTGCTGTCGGTAT 60.179 55.000 4.84 0.00 41.70 2.73
2846 3273 1.218047 GAGGCATGTGCTGTCGGTA 59.782 57.895 4.84 0.00 41.70 4.02
2847 3274 2.046892 GAGGCATGTGCTGTCGGT 60.047 61.111 4.84 0.00 41.70 4.69
2848 3275 2.046988 TGAGGCATGTGCTGTCGG 60.047 61.111 4.84 0.00 41.70 4.79
2849 3276 2.733671 CGTGAGGCATGTGCTGTCG 61.734 63.158 4.84 2.29 41.70 4.35
2850 3277 3.031964 GCGTGAGGCATGTGCTGTC 62.032 63.158 4.84 3.35 42.87 3.51
2851 3278 3.052082 GCGTGAGGCATGTGCTGT 61.052 61.111 4.84 0.00 42.87 4.40
2866 3293 1.297304 AAACAAGAACACGCGTGCG 60.297 52.632 37.35 22.37 46.03 5.34
2867 3294 1.199852 CCAAACAAGAACACGCGTGC 61.200 55.000 37.35 22.81 0.00 5.34
2868 3295 0.591236 CCCAAACAAGAACACGCGTG 60.591 55.000 35.99 35.99 0.00 5.34
2869 3296 1.725066 CCCAAACAAGAACACGCGT 59.275 52.632 5.58 5.58 0.00 6.01
2870 3297 1.657181 GCCCAAACAAGAACACGCG 60.657 57.895 3.53 3.53 0.00 6.01
2871 3298 1.299850 GGCCCAAACAAGAACACGC 60.300 57.895 0.00 0.00 0.00 5.34
2872 3299 0.673437 ATGGCCCAAACAAGAACACG 59.327 50.000 0.00 0.00 0.00 4.49
2873 3300 2.158971 ACAATGGCCCAAACAAGAACAC 60.159 45.455 0.00 0.00 0.00 3.32
2874 3301 2.114616 ACAATGGCCCAAACAAGAACA 58.885 42.857 0.00 0.00 0.00 3.18
2875 3302 2.871633 CAACAATGGCCCAAACAAGAAC 59.128 45.455 0.00 0.00 0.00 3.01
2876 3303 2.768527 TCAACAATGGCCCAAACAAGAA 59.231 40.909 0.00 0.00 0.00 2.52
2877 3304 2.364970 CTCAACAATGGCCCAAACAAGA 59.635 45.455 0.00 0.00 0.00 3.02
2878 3305 2.364970 TCTCAACAATGGCCCAAACAAG 59.635 45.455 0.00 0.00 0.00 3.16
2879 3306 2.102252 GTCTCAACAATGGCCCAAACAA 59.898 45.455 0.00 0.00 0.00 2.83
2880 3307 1.686052 GTCTCAACAATGGCCCAAACA 59.314 47.619 0.00 0.00 0.00 2.83
2881 3308 1.335872 CGTCTCAACAATGGCCCAAAC 60.336 52.381 0.00 0.00 0.00 2.93
2882 3309 0.958091 CGTCTCAACAATGGCCCAAA 59.042 50.000 0.00 0.00 0.00 3.28
2883 3310 0.893270 CCGTCTCAACAATGGCCCAA 60.893 55.000 0.00 0.00 0.00 4.12
2884 3311 1.303236 CCGTCTCAACAATGGCCCA 60.303 57.895 0.00 0.00 0.00 5.36
2885 3312 2.700773 GCCGTCTCAACAATGGCCC 61.701 63.158 0.00 0.00 42.01 5.80
2886 3313 2.877691 GCCGTCTCAACAATGGCC 59.122 61.111 0.00 0.00 42.01 5.36
2887 3314 1.315257 ATGGCCGTCTCAACAATGGC 61.315 55.000 0.00 0.00 46.20 4.40
2893 3328 0.955428 TGAGCAATGGCCGTCTCAAC 60.955 55.000 12.75 0.00 42.56 3.18
3109 3545 2.060980 GGCGGTGATCCTCCTCTGT 61.061 63.158 0.00 0.00 35.82 3.41
3170 3616 9.846248 ATTCTTTATGTAACTGTGCAAGAATTC 57.154 29.630 0.00 0.00 32.47 2.17
3193 3639 9.810545 AGTCTGCTGTACTAAGAATAGAAATTC 57.189 33.333 0.00 0.00 41.65 2.17
3194 3640 9.593134 CAGTCTGCTGTACTAAGAATAGAAATT 57.407 33.333 0.00 0.00 37.92 1.82
3206 3652 3.701040 TGCATGATCAGTCTGCTGTACTA 59.299 43.478 18.06 0.00 43.05 1.82
3421 3867 2.116125 GGGCAGCTTGTTCAGGGT 59.884 61.111 0.00 0.00 0.00 4.34
3440 3886 1.338337 GCAATCGCAGTCTAGCCTCTA 59.662 52.381 0.00 0.00 38.36 2.43
3441 3887 0.103937 GCAATCGCAGTCTAGCCTCT 59.896 55.000 0.00 0.00 38.36 3.69
3442 3888 0.179100 TGCAATCGCAGTCTAGCCTC 60.179 55.000 0.00 0.00 45.36 4.70
3443 3889 1.900351 TGCAATCGCAGTCTAGCCT 59.100 52.632 0.00 0.00 45.36 4.58
3444 3890 4.521075 TGCAATCGCAGTCTAGCC 57.479 55.556 0.00 0.00 45.36 3.93
3473 3919 2.434774 GGGTTGCTTTCCCCTCGT 59.565 61.111 0.00 0.00 39.08 4.18
3543 3993 0.032952 CACCTTCTGGTCCGAAACGA 59.967 55.000 0.00 0.00 46.60 3.85
3544 3994 1.566018 GCACCTTCTGGTCCGAAACG 61.566 60.000 0.00 0.00 46.60 3.60
3545 3995 0.534203 TGCACCTTCTGGTCCGAAAC 60.534 55.000 0.00 0.00 46.60 2.78
3546 3996 0.250295 CTGCACCTTCTGGTCCGAAA 60.250 55.000 0.00 0.00 46.60 3.46
3547 3997 1.371183 CTGCACCTTCTGGTCCGAA 59.629 57.895 0.00 0.00 46.60 4.30
3548 3998 1.407656 AACTGCACCTTCTGGTCCGA 61.408 55.000 0.00 0.00 46.60 4.55
3549 3999 0.951040 GAACTGCACCTTCTGGTCCG 60.951 60.000 0.00 0.00 46.60 4.79
3550 4000 0.951040 CGAACTGCACCTTCTGGTCC 60.951 60.000 0.00 0.00 46.60 4.46
3570 4020 1.452651 CAGCGTCCCAATCATGGCT 60.453 57.895 0.00 0.00 46.09 4.75
3657 4108 2.226330 TCGTACATTTTGGCAAGCAGT 58.774 42.857 0.00 3.01 0.00 4.40
3667 4118 3.611113 CGTCGTTGATCCTCGTACATTTT 59.389 43.478 0.00 0.00 0.00 1.82
3687 4138 2.912025 CCCTTTGCAAGTGGCCGT 60.912 61.111 13.22 0.00 43.89 5.68
3702 4153 1.578206 GCGTCTTGTTCCTTCTGCCC 61.578 60.000 0.00 0.00 0.00 5.36
3711 4162 3.609103 ATGACAAAGTGCGTCTTGTTC 57.391 42.857 0.00 0.00 36.40 3.18
3730 4181 5.431765 AGAGACATGCAAGACGGAAATAAT 58.568 37.500 0.00 0.00 0.00 1.28
3737 4188 0.109086 ACGAGAGACATGCAAGACGG 60.109 55.000 0.00 0.00 0.00 4.79
3749 4200 1.798223 CATTTTCACGCCAACGAGAGA 59.202 47.619 0.00 0.00 43.93 3.10
3798 4252 5.443230 TTCCCATCATGTACACCAATACA 57.557 39.130 0.00 0.00 39.35 2.29
3799 4253 6.560711 GTTTTCCCATCATGTACACCAATAC 58.439 40.000 0.00 0.00 0.00 1.89
3858 4313 4.776349 ACGCTATTGGTGTGATTTATGGA 58.224 39.130 0.00 0.00 37.27 3.41
3898 4353 5.585500 TTTAAGAACCATGAGTCGTTTCG 57.415 39.130 0.00 0.00 0.00 3.46
3923 4378 9.907576 GTGAAATCTATTCAGAGTAATTTCACG 57.092 33.333 21.40 0.00 41.95 4.35
3983 4438 8.990163 TTTGTGAACCTAAATTCTAAAGGAGT 57.010 30.769 0.00 0.00 34.34 3.85
4008 4473 9.777575 CTTTCGTATTCCCACGTTTTTATAATT 57.222 29.630 0.00 0.00 42.51 1.40
4021 4486 2.841266 TCCCATGTCTTTCGTATTCCCA 59.159 45.455 0.00 0.00 0.00 4.37
4022 4487 3.553828 TCCCATGTCTTTCGTATTCCC 57.446 47.619 0.00 0.00 0.00 3.97
4026 4491 6.826668 TGTCATATTCCCATGTCTTTCGTAT 58.173 36.000 0.00 0.00 0.00 3.06
4029 4494 4.512944 CCTGTCATATTCCCATGTCTTTCG 59.487 45.833 0.00 0.00 0.00 3.46
4038 4503 4.416513 ACATCCATTCCTGTCATATTCCCA 59.583 41.667 0.00 0.00 0.00 4.37
4046 4511 1.026182 GCGCACATCCATTCCTGTCA 61.026 55.000 0.30 0.00 0.00 3.58
4052 4517 1.226379 CCGTTGCGCACATCCATTC 60.226 57.895 11.12 0.00 0.00 2.67
4064 4529 1.131504 TGTTAATCAATCCGCCGTTGC 59.868 47.619 0.00 0.00 0.00 4.17
4065 4530 2.160615 TGTGTTAATCAATCCGCCGTTG 59.839 45.455 0.00 0.00 0.00 4.10
4069 4534 4.695217 TTTCTGTGTTAATCAATCCGCC 57.305 40.909 0.00 0.00 0.00 6.13
4075 4540 7.120579 ACGAGGCATAATTTCTGTGTTAATCAA 59.879 33.333 0.00 0.00 0.00 2.57
4077 4542 7.016361 ACGAGGCATAATTTCTGTGTTAATC 57.984 36.000 0.00 0.00 0.00 1.75
4078 4543 7.120579 TCAACGAGGCATAATTTCTGTGTTAAT 59.879 33.333 0.00 0.00 0.00 1.40
4087 4558 5.101628 TGCAAATCAACGAGGCATAATTTC 58.898 37.500 0.00 0.00 0.00 2.17
4092 4563 6.262944 AGAATTATGCAAATCAACGAGGCATA 59.737 34.615 0.00 0.00 42.86 3.14
4093 4564 4.924305 ATTATGCAAATCAACGAGGCAT 57.076 36.364 0.00 0.00 46.07 4.40
4094 4565 4.398988 AGAATTATGCAAATCAACGAGGCA 59.601 37.500 0.00 0.00 39.03 4.75
4096 4567 6.122850 TGAGAATTATGCAAATCAACGAGG 57.877 37.500 0.00 0.00 0.00 4.63
4100 4571 8.223100 GGTGTTTTGAGAATTATGCAAATCAAC 58.777 33.333 0.00 0.00 34.76 3.18
4102 4573 6.585702 CGGTGTTTTGAGAATTATGCAAATCA 59.414 34.615 0.00 0.00 32.27 2.57
4103 4574 6.034898 CCGGTGTTTTGAGAATTATGCAAATC 59.965 38.462 0.00 0.00 32.27 2.17
4104 4575 5.868801 CCGGTGTTTTGAGAATTATGCAAAT 59.131 36.000 0.00 0.00 32.27 2.32
4106 4577 4.520874 TCCGGTGTTTTGAGAATTATGCAA 59.479 37.500 0.00 0.00 0.00 4.08
4107 4578 4.075682 TCCGGTGTTTTGAGAATTATGCA 58.924 39.130 0.00 0.00 0.00 3.96
4143 4614 4.273148 AGAAGACATGCTTTACGTTCCT 57.727 40.909 0.00 0.00 36.83 3.36
4149 4620 8.894768 ATAGGATACAAGAAGACATGCTTTAC 57.105 34.615 0.00 0.00 36.27 2.01
4152 4623 7.256475 CCCTATAGGATACAAGAAGACATGCTT 60.256 40.741 21.07 0.00 37.40 3.91
4190 4662 9.878737 ATCAATCATTCTTCCATCTAAATTCCT 57.121 29.630 0.00 0.00 0.00 3.36
4231 4704 3.908643 ACCTCCCGGTAGAATTTCTTC 57.091 47.619 3.86 0.00 43.29 2.87
4245 4718 7.423844 AATTTTCCATCTATTGAAACCTCCC 57.576 36.000 0.00 0.00 30.64 4.30
4246 4719 9.371136 GAAAATTTTCCATCTATTGAAACCTCC 57.629 33.333 18.43 0.00 30.64 4.30
4263 4736 6.710744 TGTACTCCACTCTGAGGAAAATTTTC 59.289 38.462 20.51 20.51 36.66 2.29
4268 4741 5.623956 TTTGTACTCCACTCTGAGGAAAA 57.376 39.130 9.85 0.00 36.66 2.29
4328 4801 1.142060 TGTGGTGTCGGTTTGATTCCT 59.858 47.619 0.00 0.00 0.00 3.36
4329 4802 1.535462 CTGTGGTGTCGGTTTGATTCC 59.465 52.381 0.00 0.00 0.00 3.01
4338 4811 3.067461 TGAAAAATTTCCTGTGGTGTCGG 59.933 43.478 3.60 0.00 36.36 4.79
4339 4812 4.300189 TGAAAAATTTCCTGTGGTGTCG 57.700 40.909 3.60 0.00 36.36 4.35
4341 4814 5.188751 TCCTTTGAAAAATTTCCTGTGGTGT 59.811 36.000 3.60 0.00 36.36 4.16
4347 4820 8.625786 ATTTGGATCCTTTGAAAAATTTCCTG 57.374 30.769 14.23 0.00 36.36 3.86
4365 4840 8.670521 ATAAGTTTTTCTTGGAGGATTTGGAT 57.329 30.769 0.00 0.00 37.56 3.41
4398 4873 7.446001 AGTTGAGCTCTCCTTTTATTCAAAG 57.554 36.000 16.19 0.00 41.64 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.