Multiple sequence alignment - TraesCS1B01G242000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G242000 chr1B 100.000 6014 0 0 1 6014 429704964 429698951 0.000000e+00 11106.0
1 TraesCS1B01G242000 chr1B 74.302 179 31 11 2377 2551 320982701 320982868 1.810000e-05 62.1
2 TraesCS1B01G242000 chr1D 95.142 4076 151 23 467 4519 317595432 317591381 0.000000e+00 6386.0
3 TraesCS1B01G242000 chr1D 94.130 971 46 5 4608 5576 317591014 317590053 0.000000e+00 1467.0
4 TraesCS1B01G242000 chr1D 88.477 486 41 9 1 473 56232186 56232669 1.880000e-159 573.0
5 TraesCS1B01G242000 chr1D 92.188 64 3 2 5949 6010 317559991 317559928 8.300000e-14 89.8
6 TraesCS1B01G242000 chr1A 93.063 2883 127 33 472 3316 398671153 398668306 0.000000e+00 4148.0
7 TraesCS1B01G242000 chr1A 91.538 1359 81 11 4600 5948 398666752 398665418 0.000000e+00 1842.0
8 TraesCS1B01G242000 chr1A 93.344 1232 53 7 3353 4576 398668304 398667094 0.000000e+00 1794.0
9 TraesCS1B01G242000 chr4B 89.775 489 34 11 1 476 12254726 12254241 3.980000e-171 612.0
10 TraesCS1B01G242000 chr4B 87.234 141 17 1 4716 4856 122218295 122218156 6.240000e-35 159.0
11 TraesCS1B01G242000 chr6B 88.655 476 47 6 1 474 290894214 290894684 1.880000e-159 573.0
12 TraesCS1B01G242000 chr6B 84.527 433 66 1 3157 3588 147682623 147683055 1.550000e-115 427.0
13 TraesCS1B01G242000 chr6B 77.878 556 96 18 4170 4718 147683651 147684186 2.700000e-83 320.0
14 TraesCS1B01G242000 chr6B 81.250 384 58 11 3706 4078 147683227 147683607 1.270000e-76 298.0
15 TraesCS1B01G242000 chr6B 83.448 145 19 5 4705 4847 222680048 222680189 4.890000e-26 130.0
16 TraesCS1B01G242000 chr5B 88.679 477 44 5 1 470 565688090 565687617 1.880000e-159 573.0
17 TraesCS1B01G242000 chr5B 81.522 184 25 7 4717 4897 250542357 250542180 6.280000e-30 143.0
18 TraesCS1B01G242000 chr5D 87.967 482 44 10 1 470 438192994 438192515 1.890000e-154 556.0
19 TraesCS1B01G242000 chr5D 87.292 480 46 10 1 470 256484259 256483785 8.870000e-148 534.0
20 TraesCS1B01G242000 chr2D 86.694 481 50 6 1 470 275227502 275227979 6.910000e-144 521.0
21 TraesCS1B01G242000 chr2D 86.542 483 52 7 1 472 610450958 610451438 2.480000e-143 520.0
22 TraesCS1B01G242000 chr3B 84.501 471 65 6 2 470 595375168 595374704 5.490000e-125 459.0
23 TraesCS1B01G242000 chr2B 74.583 480 81 26 2099 2553 765257243 765256780 8.010000e-39 172.0
24 TraesCS1B01G242000 chr2B 85.517 145 14 6 4716 4856 508959635 508959494 1.750000e-30 145.0
25 TraesCS1B01G242000 chr4A 88.028 142 15 2 4716 4856 498698765 498698625 3.730000e-37 167.0
26 TraesCS1B01G242000 chr4A 73.958 480 85 24 2098 2553 127144775 127144312 2.240000e-34 158.0
27 TraesCS1B01G242000 chr4A 76.613 248 44 9 2307 2551 428567630 428567866 2.280000e-24 124.0
28 TraesCS1B01G242000 chr4D 88.235 136 16 0 4721 4856 85007356 85007221 4.820000e-36 163.0
29 TraesCS1B01G242000 chr6D 83.117 154 21 5 4705 4856 124941245 124941395 1.050000e-27 135.0
30 TraesCS1B01G242000 chr6A 88.462 104 12 0 4615 4718 89896851 89896954 6.330000e-25 126.0
31 TraesCS1B01G242000 chr5A 76.518 247 45 8 2307 2551 502661473 502661708 8.190000e-24 122.0
32 TraesCS1B01G242000 chr2A 76.518 247 45 7 2307 2551 433418389 433418624 8.190000e-24 122.0
33 TraesCS1B01G242000 chr7A 74.699 249 30 16 2307 2551 378967436 378967217 5.000000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G242000 chr1B 429698951 429704964 6013 True 11106.000000 11106 100.000000 1 6014 1 chr1B.!!$R1 6013
1 TraesCS1B01G242000 chr1D 317590053 317595432 5379 True 3926.500000 6386 94.636000 467 5576 2 chr1D.!!$R2 5109
2 TraesCS1B01G242000 chr1A 398665418 398671153 5735 True 2594.666667 4148 92.648333 472 5948 3 chr1A.!!$R1 5476
3 TraesCS1B01G242000 chr6B 147682623 147684186 1563 False 348.333333 427 81.218333 3157 4718 3 chr6B.!!$F3 1561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.035458 ACGGCAACCAGAGAAGGAAG 59.965 55.000 0.00 0.00 0.00 3.46 F
338 339 0.163788 GACGTGTGAGCGATTTGTGG 59.836 55.000 0.00 0.00 35.59 4.17 F
1851 1888 0.035152 TTGCCCCACTGTAGATGCTG 60.035 55.000 0.00 0.00 0.00 4.41 F
2061 2103 1.133790 GCAAAGCATCCTGGATGTGAC 59.866 52.381 31.40 18.51 41.60 3.67 F
2348 2392 1.421646 GCCTATGCCCAGTCTGGTAAT 59.578 52.381 17.85 12.46 35.17 1.89 F
4018 4125 1.619332 TGCATGAAAAAGGCAGCATGA 59.381 42.857 0.00 0.00 41.54 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1037 0.468585 GCCCATCAATCTCCATGGCA 60.469 55.000 6.96 0.0 38.67 4.92 R
2061 2103 1.299541 GACGCCCAATGTATGACTGG 58.700 55.000 0.00 0.0 0.00 4.00 R
3256 3301 0.115152 TCTTCTGGCACCTCTCCTCA 59.885 55.000 0.00 0.0 0.00 3.86 R
3626 3692 0.320683 TGCACAACTCATCCTGACGG 60.321 55.000 0.00 0.0 0.00 4.79 R
4240 4349 2.035626 CAAACACGCCCTGGGGAT 59.964 61.111 16.03 0.0 37.50 3.85 R
5826 6271 0.026803 GACTAGGCAAATTCGCGCTG 59.973 55.000 5.56 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.773860 GTGGTGTGTTTTGTCATGACA 57.226 42.857 24.56 24.56 39.98 3.58
21 22 4.305989 GTGGTGTGTTTTGTCATGACAT 57.694 40.909 28.32 0.00 41.52 3.06
22 23 4.290155 GTGGTGTGTTTTGTCATGACATC 58.710 43.478 28.32 20.37 41.52 3.06
23 24 3.950395 TGGTGTGTTTTGTCATGACATCA 59.050 39.130 28.32 22.39 41.52 3.07
24 25 4.583907 TGGTGTGTTTTGTCATGACATCAT 59.416 37.500 28.32 0.00 41.52 2.45
35 36 2.820059 TGACATCATGGATAGTCGCC 57.180 50.000 0.00 0.00 33.83 5.54
36 37 2.038659 TGACATCATGGATAGTCGCCA 58.961 47.619 0.00 0.00 40.24 5.69
37 38 2.634453 TGACATCATGGATAGTCGCCAT 59.366 45.455 0.00 0.00 46.76 4.40
43 44 3.777106 ATGGATAGTCGCCATGTTCAT 57.223 42.857 0.00 0.00 44.21 2.57
44 45 2.837498 TGGATAGTCGCCATGTTCATG 58.163 47.619 5.88 5.88 0.00 3.07
45 46 2.146342 GGATAGTCGCCATGTTCATGG 58.854 52.381 22.95 22.95 44.44 3.66
46 47 2.146342 GATAGTCGCCATGTTCATGGG 58.854 52.381 26.55 18.56 41.94 4.00
47 48 0.463654 TAGTCGCCATGTTCATGGGC 60.464 55.000 26.55 19.12 41.94 5.36
51 52 3.673173 GCCATGTTCATGGGCAATC 57.327 52.632 26.55 10.94 46.92 2.67
52 53 1.117150 GCCATGTTCATGGGCAATCT 58.883 50.000 26.55 0.00 46.92 2.40
53 54 1.202486 GCCATGTTCATGGGCAATCTG 60.202 52.381 26.55 5.75 46.92 2.90
54 55 1.202486 CCATGTTCATGGGCAATCTGC 60.202 52.381 20.44 0.00 44.08 4.26
71 72 8.470040 GCAATCTGCAATTTCAATTTTCTAGA 57.530 30.769 0.00 0.00 44.26 2.43
72 73 8.378421 GCAATCTGCAATTTCAATTTTCTAGAC 58.622 33.333 0.00 0.00 44.26 2.59
73 74 9.414295 CAATCTGCAATTTCAATTTTCTAGACA 57.586 29.630 0.00 0.00 0.00 3.41
74 75 9.635520 AATCTGCAATTTCAATTTTCTAGACAG 57.364 29.630 0.00 0.00 0.00 3.51
75 76 8.394971 TCTGCAATTTCAATTTTCTAGACAGA 57.605 30.769 0.00 0.00 0.00 3.41
76 77 8.849168 TCTGCAATTTCAATTTTCTAGACAGAA 58.151 29.630 0.00 0.00 39.06 3.02
77 78 9.125906 CTGCAATTTCAATTTTCTAGACAGAAG 57.874 33.333 0.00 0.00 41.75 2.85
78 79 8.849168 TGCAATTTCAATTTTCTAGACAGAAGA 58.151 29.630 0.00 0.00 41.75 2.87
79 80 9.683069 GCAATTTCAATTTTCTAGACAGAAGAA 57.317 29.630 0.00 0.00 41.75 2.52
82 83 9.799106 ATTTCAATTTTCTAGACAGAAGAAGGA 57.201 29.630 0.00 0.00 41.75 3.36
83 84 8.608844 TTCAATTTTCTAGACAGAAGAAGGAC 57.391 34.615 0.00 0.00 41.75 3.85
84 85 6.868864 TCAATTTTCTAGACAGAAGAAGGACG 59.131 38.462 0.00 0.00 41.75 4.79
85 86 6.591750 ATTTTCTAGACAGAAGAAGGACGA 57.408 37.500 0.00 0.00 41.75 4.20
86 87 5.630661 TTTCTAGACAGAAGAAGGACGAG 57.369 43.478 0.00 0.00 41.75 4.18
87 88 4.554960 TCTAGACAGAAGAAGGACGAGA 57.445 45.455 0.00 0.00 0.00 4.04
88 89 4.907809 TCTAGACAGAAGAAGGACGAGAA 58.092 43.478 0.00 0.00 0.00 2.87
89 90 5.314529 TCTAGACAGAAGAAGGACGAGAAA 58.685 41.667 0.00 0.00 0.00 2.52
90 91 4.245845 AGACAGAAGAAGGACGAGAAAC 57.754 45.455 0.00 0.00 0.00 2.78
91 92 3.637229 AGACAGAAGAAGGACGAGAAACA 59.363 43.478 0.00 0.00 0.00 2.83
92 93 3.983741 ACAGAAGAAGGACGAGAAACAG 58.016 45.455 0.00 0.00 0.00 3.16
93 94 3.243907 ACAGAAGAAGGACGAGAAACAGG 60.244 47.826 0.00 0.00 0.00 4.00
94 95 3.005897 CAGAAGAAGGACGAGAAACAGGA 59.994 47.826 0.00 0.00 0.00 3.86
95 96 3.257127 AGAAGAAGGACGAGAAACAGGAG 59.743 47.826 0.00 0.00 0.00 3.69
96 97 1.896465 AGAAGGACGAGAAACAGGAGG 59.104 52.381 0.00 0.00 0.00 4.30
97 98 1.893801 GAAGGACGAGAAACAGGAGGA 59.106 52.381 0.00 0.00 0.00 3.71
98 99 2.011122 AGGACGAGAAACAGGAGGAA 57.989 50.000 0.00 0.00 0.00 3.36
99 100 2.326428 AGGACGAGAAACAGGAGGAAA 58.674 47.619 0.00 0.00 0.00 3.13
100 101 2.907042 AGGACGAGAAACAGGAGGAAAT 59.093 45.455 0.00 0.00 0.00 2.17
101 102 3.055747 AGGACGAGAAACAGGAGGAAATC 60.056 47.826 0.00 0.00 0.00 2.17
102 103 2.924290 GACGAGAAACAGGAGGAAATCG 59.076 50.000 0.00 0.00 35.21 3.34
103 104 2.271800 CGAGAAACAGGAGGAAATCGG 58.728 52.381 0.00 0.00 0.00 4.18
104 105 2.094182 CGAGAAACAGGAGGAAATCGGA 60.094 50.000 0.00 0.00 0.00 4.55
105 106 3.526534 GAGAAACAGGAGGAAATCGGAG 58.473 50.000 0.00 0.00 0.00 4.63
106 107 3.173965 AGAAACAGGAGGAAATCGGAGA 58.826 45.455 0.00 0.00 45.75 3.71
107 108 3.777522 AGAAACAGGAGGAAATCGGAGAT 59.222 43.478 0.00 0.00 45.12 2.75
108 109 3.828875 AACAGGAGGAAATCGGAGATC 57.171 47.619 0.00 0.00 45.12 2.75
109 110 1.683917 ACAGGAGGAAATCGGAGATCG 59.316 52.381 0.00 0.00 45.12 3.69
119 120 1.022735 TCGGAGATCGACCTGTTAGC 58.977 55.000 9.57 0.00 43.74 3.09
120 121 1.025812 CGGAGATCGACCTGTTAGCT 58.974 55.000 9.57 0.00 42.43 3.32
121 122 1.405821 CGGAGATCGACCTGTTAGCTT 59.594 52.381 0.00 0.00 42.43 3.74
122 123 2.796383 CGGAGATCGACCTGTTAGCTTG 60.796 54.545 0.00 0.00 42.43 4.01
123 124 2.166664 GGAGATCGACCTGTTAGCTTGT 59.833 50.000 0.00 0.00 0.00 3.16
124 125 3.440228 GAGATCGACCTGTTAGCTTGTC 58.560 50.000 0.00 0.00 0.00 3.18
126 127 3.491581 CGACCTGTTAGCTTGTCGT 57.508 52.632 11.30 0.00 44.00 4.34
127 128 1.337821 CGACCTGTTAGCTTGTCGTC 58.662 55.000 11.30 0.00 44.00 4.20
128 129 1.337821 GACCTGTTAGCTTGTCGTCG 58.662 55.000 0.00 0.00 0.00 5.12
129 130 0.666577 ACCTGTTAGCTTGTCGTCGC 60.667 55.000 0.00 0.00 0.00 5.19
130 131 1.674611 CCTGTTAGCTTGTCGTCGCG 61.675 60.000 0.00 0.00 0.00 5.87
131 132 1.674611 CTGTTAGCTTGTCGTCGCGG 61.675 60.000 6.13 0.00 0.00 6.46
132 133 2.126228 TTAGCTTGTCGTCGCGGG 60.126 61.111 6.13 0.00 0.00 6.13
133 134 3.636313 TTAGCTTGTCGTCGCGGGG 62.636 63.158 6.13 0.00 0.00 5.73
136 137 4.675029 CTTGTCGTCGCGGGGGTT 62.675 66.667 6.13 0.00 0.00 4.11
137 138 4.973055 TTGTCGTCGCGGGGGTTG 62.973 66.667 6.13 0.00 0.00 3.77
164 165 3.541713 GGTGGGGAGGCGCTAGAG 61.542 72.222 7.64 0.00 0.00 2.43
165 166 2.442272 GTGGGGAGGCGCTAGAGA 60.442 66.667 7.64 0.00 0.00 3.10
166 167 1.834822 GTGGGGAGGCGCTAGAGAT 60.835 63.158 7.64 0.00 0.00 2.75
167 168 1.531840 TGGGGAGGCGCTAGAGATC 60.532 63.158 7.64 0.00 0.00 2.75
168 169 1.228737 GGGGAGGCGCTAGAGATCT 60.229 63.158 7.64 0.00 0.00 2.75
169 170 1.531739 GGGGAGGCGCTAGAGATCTG 61.532 65.000 7.64 0.00 0.00 2.90
170 171 1.531739 GGGAGGCGCTAGAGATCTGG 61.532 65.000 7.64 0.00 0.00 3.86
171 172 0.825840 GGAGGCGCTAGAGATCTGGT 60.826 60.000 7.64 0.00 0.00 4.00
172 173 0.596082 GAGGCGCTAGAGATCTGGTC 59.404 60.000 7.64 0.00 0.00 4.02
173 174 0.825840 AGGCGCTAGAGATCTGGTCC 60.826 60.000 7.64 0.00 0.00 4.46
174 175 1.284408 GCGCTAGAGATCTGGTCCG 59.716 63.158 0.00 0.00 0.00 4.79
175 176 1.953017 CGCTAGAGATCTGGTCCGG 59.047 63.158 0.00 0.00 0.00 5.14
176 177 0.820074 CGCTAGAGATCTGGTCCGGT 60.820 60.000 0.00 0.00 0.00 5.28
177 178 1.404843 GCTAGAGATCTGGTCCGGTT 58.595 55.000 0.00 0.00 0.00 4.44
178 179 1.067821 GCTAGAGATCTGGTCCGGTTG 59.932 57.143 0.00 0.00 0.00 3.77
179 180 1.067821 CTAGAGATCTGGTCCGGTTGC 59.932 57.143 0.00 0.00 0.00 4.17
180 181 1.153349 GAGATCTGGTCCGGTTGCC 60.153 63.158 0.00 3.21 0.00 4.52
181 182 1.899437 GAGATCTGGTCCGGTTGCCA 61.899 60.000 0.00 8.16 0.00 4.92
182 183 1.745489 GATCTGGTCCGGTTGCCAC 60.745 63.158 0.00 0.00 0.00 5.01
183 184 3.605749 ATCTGGTCCGGTTGCCACG 62.606 63.158 0.00 3.92 0.00 4.94
195 196 2.281484 GCCACGGCAACCAGAGAA 60.281 61.111 2.36 0.00 41.49 2.87
196 197 2.328099 GCCACGGCAACCAGAGAAG 61.328 63.158 2.36 0.00 41.49 2.85
197 198 1.672356 CCACGGCAACCAGAGAAGG 60.672 63.158 0.00 0.00 0.00 3.46
198 199 1.371183 CACGGCAACCAGAGAAGGA 59.629 57.895 0.00 0.00 0.00 3.36
199 200 0.250295 CACGGCAACCAGAGAAGGAA 60.250 55.000 0.00 0.00 0.00 3.36
200 201 0.035458 ACGGCAACCAGAGAAGGAAG 59.965 55.000 0.00 0.00 0.00 3.46
201 202 0.321671 CGGCAACCAGAGAAGGAAGA 59.678 55.000 0.00 0.00 0.00 2.87
202 203 1.814793 GGCAACCAGAGAAGGAAGAC 58.185 55.000 0.00 0.00 0.00 3.01
203 204 1.433534 GCAACCAGAGAAGGAAGACG 58.566 55.000 0.00 0.00 0.00 4.18
204 205 1.000955 GCAACCAGAGAAGGAAGACGA 59.999 52.381 0.00 0.00 0.00 4.20
205 206 2.354203 GCAACCAGAGAAGGAAGACGAT 60.354 50.000 0.00 0.00 0.00 3.73
206 207 3.257393 CAACCAGAGAAGGAAGACGATG 58.743 50.000 0.00 0.00 0.00 3.84
207 208 1.827969 ACCAGAGAAGGAAGACGATGG 59.172 52.381 0.00 0.00 0.00 3.51
208 209 2.103373 CCAGAGAAGGAAGACGATGGA 58.897 52.381 0.00 0.00 0.00 3.41
209 210 2.100584 CCAGAGAAGGAAGACGATGGAG 59.899 54.545 0.00 0.00 0.00 3.86
210 211 2.100584 CAGAGAAGGAAGACGATGGAGG 59.899 54.545 0.00 0.00 0.00 4.30
211 212 2.104170 GAGAAGGAAGACGATGGAGGT 58.896 52.381 0.00 0.00 0.00 3.85
212 213 3.053544 AGAGAAGGAAGACGATGGAGGTA 60.054 47.826 0.00 0.00 0.00 3.08
213 214 3.292460 AGAAGGAAGACGATGGAGGTAG 58.708 50.000 0.00 0.00 0.00 3.18
214 215 2.074729 AGGAAGACGATGGAGGTAGG 57.925 55.000 0.00 0.00 0.00 3.18
215 216 1.041437 GGAAGACGATGGAGGTAGGG 58.959 60.000 0.00 0.00 0.00 3.53
216 217 1.041437 GAAGACGATGGAGGTAGGGG 58.959 60.000 0.00 0.00 0.00 4.79
217 218 0.635009 AAGACGATGGAGGTAGGGGA 59.365 55.000 0.00 0.00 0.00 4.81
218 219 0.861155 AGACGATGGAGGTAGGGGAT 59.139 55.000 0.00 0.00 0.00 3.85
219 220 1.203075 AGACGATGGAGGTAGGGGATC 60.203 57.143 0.00 0.00 0.00 3.36
220 221 0.539901 ACGATGGAGGTAGGGGATCG 60.540 60.000 0.00 0.00 41.29 3.69
221 222 0.251209 CGATGGAGGTAGGGGATCGA 60.251 60.000 0.00 0.00 38.53 3.59
222 223 1.551452 GATGGAGGTAGGGGATCGAG 58.449 60.000 0.00 0.00 0.00 4.04
223 224 1.075698 GATGGAGGTAGGGGATCGAGA 59.924 57.143 0.00 0.00 0.00 4.04
224 225 0.478942 TGGAGGTAGGGGATCGAGAG 59.521 60.000 0.00 0.00 0.00 3.20
225 226 0.251430 GGAGGTAGGGGATCGAGAGG 60.251 65.000 0.00 0.00 0.00 3.69
226 227 0.479378 GAGGTAGGGGATCGAGAGGT 59.521 60.000 0.00 0.00 0.00 3.85
227 228 1.704070 GAGGTAGGGGATCGAGAGGTA 59.296 57.143 0.00 0.00 0.00 3.08
228 229 1.706305 AGGTAGGGGATCGAGAGGTAG 59.294 57.143 0.00 0.00 0.00 3.18
229 230 1.272037 GGTAGGGGATCGAGAGGTAGG 60.272 61.905 0.00 0.00 0.00 3.18
230 231 1.704070 GTAGGGGATCGAGAGGTAGGA 59.296 57.143 0.00 0.00 0.00 2.94
231 232 0.774908 AGGGGATCGAGAGGTAGGAG 59.225 60.000 0.00 0.00 0.00 3.69
232 233 0.772384 GGGGATCGAGAGGTAGGAGA 59.228 60.000 0.00 0.00 0.00 3.71
233 234 1.356398 GGGGATCGAGAGGTAGGAGAT 59.644 57.143 0.00 0.00 0.00 2.75
234 235 2.442413 GGGATCGAGAGGTAGGAGATG 58.558 57.143 0.00 0.00 0.00 2.90
235 236 2.040545 GGGATCGAGAGGTAGGAGATGA 59.959 54.545 0.00 0.00 0.00 2.92
236 237 3.078837 GGATCGAGAGGTAGGAGATGAC 58.921 54.545 0.00 0.00 0.00 3.06
237 238 2.242047 TCGAGAGGTAGGAGATGACG 57.758 55.000 0.00 0.00 0.00 4.35
238 239 1.202663 TCGAGAGGTAGGAGATGACGG 60.203 57.143 0.00 0.00 0.00 4.79
239 240 0.955905 GAGAGGTAGGAGATGACGGC 59.044 60.000 0.00 0.00 0.00 5.68
240 241 0.820074 AGAGGTAGGAGATGACGGCG 60.820 60.000 4.80 4.80 0.00 6.46
241 242 1.797211 GAGGTAGGAGATGACGGCGG 61.797 65.000 13.24 0.00 0.00 6.13
242 243 2.027751 GTAGGAGATGACGGCGGC 59.972 66.667 13.24 9.67 0.00 6.53
243 244 2.441348 TAGGAGATGACGGCGGCA 60.441 61.111 21.84 21.84 0.00 5.69
244 245 2.490148 TAGGAGATGACGGCGGCAG 61.490 63.158 24.18 0.00 0.00 4.85
245 246 4.899239 GGAGATGACGGCGGCAGG 62.899 72.222 24.18 0.00 0.00 4.85
246 247 4.148825 GAGATGACGGCGGCAGGT 62.149 66.667 24.18 11.10 0.00 4.00
247 248 4.148825 AGATGACGGCGGCAGGTC 62.149 66.667 24.18 15.66 0.00 3.85
256 257 4.856801 CGGCAGGTCGGAATGGGG 62.857 72.222 0.00 0.00 0.00 4.96
257 258 3.728373 GGCAGGTCGGAATGGGGT 61.728 66.667 0.00 0.00 0.00 4.95
258 259 2.355115 GCAGGTCGGAATGGGGTT 59.645 61.111 0.00 0.00 0.00 4.11
259 260 2.046285 GCAGGTCGGAATGGGGTTG 61.046 63.158 0.00 0.00 0.00 3.77
260 261 1.378514 CAGGTCGGAATGGGGTTGG 60.379 63.158 0.00 0.00 0.00 3.77
261 262 1.540367 AGGTCGGAATGGGGTTGGA 60.540 57.895 0.00 0.00 0.00 3.53
262 263 1.137594 AGGTCGGAATGGGGTTGGAA 61.138 55.000 0.00 0.00 0.00 3.53
263 264 0.679960 GGTCGGAATGGGGTTGGAAG 60.680 60.000 0.00 0.00 0.00 3.46
264 265 0.679960 GTCGGAATGGGGTTGGAAGG 60.680 60.000 0.00 0.00 0.00 3.46
265 266 2.052104 CGGAATGGGGTTGGAAGGC 61.052 63.158 0.00 0.00 0.00 4.35
266 267 1.078347 GGAATGGGGTTGGAAGGCA 59.922 57.895 0.00 0.00 0.00 4.75
267 268 0.972471 GGAATGGGGTTGGAAGGCAG 60.972 60.000 0.00 0.00 0.00 4.85
268 269 0.972471 GAATGGGGTTGGAAGGCAGG 60.972 60.000 0.00 0.00 0.00 4.85
269 270 3.607084 ATGGGGTTGGAAGGCAGGC 62.607 63.158 0.00 0.00 0.00 4.85
288 289 4.054825 GGGACGACGGGTGCGTTA 62.055 66.667 0.00 0.00 42.77 3.18
289 290 2.505557 GGACGACGGGTGCGTTAG 60.506 66.667 0.00 0.00 42.77 2.34
290 291 2.505557 GACGACGGGTGCGTTAGG 60.506 66.667 0.00 0.00 42.77 2.69
291 292 3.273080 GACGACGGGTGCGTTAGGT 62.273 63.158 0.00 0.00 42.77 3.08
292 293 2.505557 CGACGGGTGCGTTAGGTC 60.506 66.667 0.00 0.00 0.00 3.85
293 294 2.505557 GACGGGTGCGTTAGGTCG 60.506 66.667 0.00 0.00 0.00 4.79
294 295 3.273080 GACGGGTGCGTTAGGTCGT 62.273 63.158 0.00 0.00 0.00 4.34
295 296 2.807895 CGGGTGCGTTAGGTCGTG 60.808 66.667 0.00 0.00 0.00 4.35
296 297 3.116531 GGGTGCGTTAGGTCGTGC 61.117 66.667 0.00 0.00 0.00 5.34
297 298 3.475774 GGTGCGTTAGGTCGTGCG 61.476 66.667 0.00 0.00 0.00 5.34
298 299 3.475774 GTGCGTTAGGTCGTGCGG 61.476 66.667 0.00 0.00 0.00 5.69
299 300 4.728102 TGCGTTAGGTCGTGCGGG 62.728 66.667 0.00 0.00 0.00 6.13
301 302 4.728102 CGTTAGGTCGTGCGGGCA 62.728 66.667 0.00 0.00 0.00 5.36
302 303 2.813908 GTTAGGTCGTGCGGGCAG 60.814 66.667 0.00 0.00 0.00 4.85
320 321 3.872728 CGCGGTCGATCGTCCTGA 61.873 66.667 25.23 0.00 38.10 3.86
321 322 2.278013 GCGGTCGATCGTCCTGAC 60.278 66.667 25.23 11.88 0.00 3.51
331 332 2.643272 GTCCTGACGTGTGAGCGA 59.357 61.111 0.00 0.00 35.59 4.93
332 333 1.213013 GTCCTGACGTGTGAGCGAT 59.787 57.895 0.00 0.00 35.59 4.58
333 334 0.388649 GTCCTGACGTGTGAGCGATT 60.389 55.000 0.00 0.00 35.59 3.34
334 335 0.317160 TCCTGACGTGTGAGCGATTT 59.683 50.000 0.00 0.00 35.59 2.17
335 336 0.439985 CCTGACGTGTGAGCGATTTG 59.560 55.000 0.00 0.00 35.59 2.32
336 337 1.139989 CTGACGTGTGAGCGATTTGT 58.860 50.000 0.00 0.00 35.59 2.83
337 338 0.858583 TGACGTGTGAGCGATTTGTG 59.141 50.000 0.00 0.00 35.59 3.33
338 339 0.163788 GACGTGTGAGCGATTTGTGG 59.836 55.000 0.00 0.00 35.59 4.17
339 340 1.154413 CGTGTGAGCGATTTGTGGC 60.154 57.895 0.00 0.00 0.00 5.01
340 341 1.840630 CGTGTGAGCGATTTGTGGCA 61.841 55.000 0.00 0.00 0.00 4.92
341 342 0.385974 GTGTGAGCGATTTGTGGCAC 60.386 55.000 11.55 11.55 0.00 5.01
342 343 0.817229 TGTGAGCGATTTGTGGCACA 60.817 50.000 17.96 17.96 34.28 4.57
353 354 2.356913 TGGCACACATCGGACGTG 60.357 61.111 2.18 2.18 40.32 4.49
355 356 4.134187 GCACACATCGGACGTGCG 62.134 66.667 24.40 24.40 45.69 5.34
356 357 3.478394 CACACATCGGACGTGCGG 61.478 66.667 29.10 16.46 37.93 5.69
357 358 4.735132 ACACATCGGACGTGCGGG 62.735 66.667 29.10 22.51 37.93 6.13
412 413 3.998672 GGGTCGTCTCCGTGCCAA 61.999 66.667 0.00 0.00 33.92 4.52
413 414 2.029964 GGTCGTCTCCGTGCCAAA 59.970 61.111 0.00 0.00 35.01 3.28
414 415 2.315386 GGTCGTCTCCGTGCCAAAC 61.315 63.158 0.00 0.00 35.01 2.93
415 416 1.593209 GTCGTCTCCGTGCCAAACA 60.593 57.895 0.00 0.00 35.01 2.83
416 417 1.300620 TCGTCTCCGTGCCAAACAG 60.301 57.895 0.00 0.00 35.01 3.16
417 418 2.317609 CGTCTCCGTGCCAAACAGG 61.318 63.158 0.00 0.00 41.84 4.00
426 427 2.568090 CCAAACAGGGCATGCGAC 59.432 61.111 12.44 7.29 0.00 5.19
427 428 2.267351 CCAAACAGGGCATGCGACA 61.267 57.895 12.44 0.00 0.00 4.35
428 429 1.081242 CAAACAGGGCATGCGACAC 60.081 57.895 12.44 1.75 0.00 3.67
429 430 1.528076 AAACAGGGCATGCGACACA 60.528 52.632 12.44 0.00 0.00 3.72
430 431 1.106351 AAACAGGGCATGCGACACAA 61.106 50.000 12.44 0.00 0.00 3.33
431 432 1.795170 AACAGGGCATGCGACACAAC 61.795 55.000 12.44 0.00 0.00 3.32
432 433 2.672996 AGGGCATGCGACACAACC 60.673 61.111 12.44 5.12 0.00 3.77
433 434 4.101790 GGGCATGCGACACAACCG 62.102 66.667 12.44 0.00 30.89 4.44
440 441 4.957266 CGACACAACCGCACTAGA 57.043 55.556 0.00 0.00 0.00 2.43
441 442 3.418675 CGACACAACCGCACTAGAT 57.581 52.632 0.00 0.00 0.00 1.98
442 443 0.992072 CGACACAACCGCACTAGATG 59.008 55.000 0.00 0.00 0.00 2.90
452 453 3.514777 CACTAGATGCCACACGTGT 57.485 52.632 17.22 17.22 0.00 4.49
453 454 1.070821 CACTAGATGCCACACGTGTG 58.929 55.000 36.13 36.13 45.23 3.82
464 465 2.060326 ACACGTGTGACAGTTATCGG 57.940 50.000 22.71 0.00 0.00 4.18
465 466 0.713883 CACGTGTGACAGTTATCGGC 59.286 55.000 7.58 0.00 0.00 5.54
509 513 9.660544 AATCAAGTCCTTTAAATATATGGGCTT 57.339 29.630 4.83 4.83 42.63 4.35
554 558 2.723586 GATAGGCTGCTCTTCCCGGC 62.724 65.000 0.00 0.00 0.00 6.13
718 731 3.083997 GCCCCATCTCCACCGAGT 61.084 66.667 0.00 0.00 37.40 4.18
726 739 3.257393 CATCTCCACCGAGTGAAAGAAG 58.743 50.000 5.71 2.86 37.40 2.85
727 740 1.000955 TCTCCACCGAGTGAAAGAAGC 59.999 52.381 5.71 0.00 37.40 3.86
729 742 0.868406 CCACCGAGTGAAAGAAGCAC 59.132 55.000 5.71 0.00 35.23 4.40
732 745 1.134521 ACCGAGTGAAAGAAGCACACA 60.135 47.619 0.00 0.00 38.70 3.72
751 764 3.213402 GAGAGGCGACGGGGAGAG 61.213 72.222 0.00 0.00 0.00 3.20
832 848 2.424956 GGTGATTTCAGCTGTCCAATCC 59.575 50.000 22.28 16.60 40.88 3.01
833 849 2.096496 GTGATTTCAGCTGTCCAATCCG 59.904 50.000 22.28 0.00 0.00 4.18
856 872 2.041928 CCTGGCCTTCCCTCCTCT 59.958 66.667 3.32 0.00 0.00 3.69
905 922 1.682684 ATCTCCCGTGTCGCCTCTT 60.683 57.895 0.00 0.00 0.00 2.85
939 956 4.202326 ACCCGACCAATCTAATACATCCAC 60.202 45.833 0.00 0.00 0.00 4.02
974 991 1.327764 GGTTATTCTTCTTCAGCGCGG 59.672 52.381 8.83 0.00 0.00 6.46
985 1002 2.018866 CAGCGCGGAAGATCGATCC 61.019 63.158 21.66 7.66 0.00 3.36
1020 1037 1.152226 GGGGGATGAGAGGGTCGAT 60.152 63.158 0.00 0.00 0.00 3.59
1166 1183 1.655372 ATTTGTGGGATGGTTTGGGG 58.345 50.000 0.00 0.00 0.00 4.96
1199 1216 4.803329 AATGGGAGGTAGATCTGCATTT 57.197 40.909 13.14 0.00 0.00 2.32
1205 1222 3.549794 AGGTAGATCTGCATTTCCTTGC 58.450 45.455 13.14 0.00 43.07 4.01
1331 1359 5.931441 AGAAAAACATCAGGAGACTTTCG 57.069 39.130 0.00 0.00 40.21 3.46
1344 1374 6.147164 CAGGAGACTTTCGTACTGCATAAAAA 59.853 38.462 0.00 0.00 40.21 1.94
1348 1378 6.929606 AGACTTTCGTACTGCATAAAAACTCT 59.070 34.615 0.00 0.00 0.00 3.24
1463 1494 5.411669 CGGTCAGCTCTTGTTTAATAACCTT 59.588 40.000 0.00 0.00 33.15 3.50
1597 1628 1.338674 CCGTATGTGCCCTCTGTTTGA 60.339 52.381 0.00 0.00 0.00 2.69
1638 1669 6.690530 CATTTGATAGAAAACAGGGCAAGAA 58.309 36.000 0.00 0.00 0.00 2.52
1647 1678 1.145738 ACAGGGCAAGAACAGACCAAT 59.854 47.619 0.00 0.00 36.27 3.16
1691 1728 9.882996 CAATTATTTAATGCACGATCATAGTGT 57.117 29.630 0.00 0.00 41.36 3.55
1704 1741 9.249457 CACGATCATAGTGTTATTGTTATGTCT 57.751 33.333 0.00 0.00 35.08 3.41
1732 1769 4.696455 CCTCAAAATGTGGAAGCAACTTT 58.304 39.130 0.00 0.00 33.04 2.66
1767 1804 6.157211 TCAGCTCTAAAAGTTCTTTCCTACG 58.843 40.000 0.00 0.00 0.00 3.51
1793 1830 1.884579 CTTGTGCTTGCTTCCTCACAT 59.115 47.619 0.00 0.00 38.94 3.21
1848 1885 3.012518 CTCTTTTGCCCCACTGTAGATG 58.987 50.000 0.00 0.00 0.00 2.90
1849 1886 1.474077 CTTTTGCCCCACTGTAGATGC 59.526 52.381 0.00 0.00 0.00 3.91
1850 1887 0.698238 TTTGCCCCACTGTAGATGCT 59.302 50.000 0.00 0.00 0.00 3.79
1851 1888 0.035152 TTGCCCCACTGTAGATGCTG 60.035 55.000 0.00 0.00 0.00 4.41
1858 1900 3.270877 CCACTGTAGATGCTGGTTAACC 58.729 50.000 18.27 18.27 0.00 2.85
1893 1935 7.710907 TCTTACAAACCATATAGTGCTGATGAC 59.289 37.037 0.00 0.00 0.00 3.06
1928 1970 3.686691 GCAGGAAAGCTCTTCCCATATGT 60.687 47.826 18.40 2.99 39.39 2.29
1990 2032 5.422012 TGATCATACCTTCACTGCTTCAGTA 59.578 40.000 0.00 0.00 43.43 2.74
2005 2047 5.047021 TGCTTCAGTAAGATGCTAACTGTCT 60.047 40.000 0.00 0.00 45.09 3.41
2022 2064 5.428253 ACTGTCTTGCTCTTTGTTAACTGA 58.572 37.500 7.22 2.23 0.00 3.41
2061 2103 1.133790 GCAAAGCATCCTGGATGTGAC 59.866 52.381 31.40 18.51 41.60 3.67
2151 2193 4.222810 TCCTTTGATAGTGCAGCTGAACTA 59.777 41.667 32.22 32.22 40.28 2.24
2283 2326 9.733556 TTATTTTCTGTATTATGACCTGTGTGT 57.266 29.630 0.00 0.00 0.00 3.72
2295 2338 2.562298 ACCTGTGTGTTATTGCCCAATG 59.438 45.455 3.85 0.00 32.50 2.82
2348 2392 1.421646 GCCTATGCCCAGTCTGGTAAT 59.578 52.381 17.85 12.46 35.17 1.89
2357 2401 5.193679 GCCCAGTCTGGTAATAATGTCTTT 58.806 41.667 17.85 0.00 35.17 2.52
2424 2468 8.004215 ACATGCCATGTTATTTTCCTCCTTATA 58.996 33.333 4.03 0.00 41.63 0.98
2426 2470 8.232913 TGCCATGTTATTTTCCTCCTTATAAC 57.767 34.615 0.00 0.00 35.21 1.89
2456 2500 5.468746 GTCCTGTTATCTTTGTGCAACTGTA 59.531 40.000 0.00 0.00 38.04 2.74
2555 2599 2.527624 TGTCTGGACTGCTGGCCT 60.528 61.111 17.44 0.00 0.00 5.19
2564 2608 2.436417 GACTGCTGGCCTTTAATGACA 58.564 47.619 3.32 0.00 0.00 3.58
2627 2671 8.942669 TGTTATTTCGTTATGCAACTACTTTG 57.057 30.769 0.00 0.00 38.37 2.77
2676 2720 9.790344 ATGAAGATTCTGGATAATTAACTGAGG 57.210 33.333 0.00 0.00 0.00 3.86
2722 2766 6.993308 TGGTTTGCTTCACTGTAATAACTGTA 59.007 34.615 0.00 0.00 36.16 2.74
2829 2873 9.204570 GTTTGTGATAGTAGAGCAAGAAAGTAA 57.795 33.333 0.00 0.00 0.00 2.24
2865 2909 6.169800 CCTTTTCTTTGTTTCCTTGGTTTGA 58.830 36.000 0.00 0.00 0.00 2.69
3124 3169 7.278461 TCTAACCATCTCTCTACTTGCATAC 57.722 40.000 0.00 0.00 0.00 2.39
3125 3170 4.946478 ACCATCTCTCTACTTGCATACC 57.054 45.455 0.00 0.00 0.00 2.73
3256 3301 5.653769 ACATAGCCAACAACTATTTGCATCT 59.346 36.000 0.00 0.00 36.00 2.90
3280 3325 2.769095 GGAGAGGTGCCAGAAGATACTT 59.231 50.000 0.00 0.00 0.00 2.24
3562 3608 5.475564 ACAAGGTTAATGTTTAATCGCCTGT 59.524 36.000 0.00 0.00 0.00 4.00
3737 3837 4.379243 CAGACGCAGGGGCTTCGT 62.379 66.667 0.00 0.00 42.66 3.85
3796 3896 4.710375 TCCTAGACTTGACATGGAGGTAAC 59.290 45.833 0.00 0.00 0.00 2.50
3814 3915 7.307811 GGAGGTAACAGCAAAATTATACCGATC 60.308 40.741 0.00 0.00 38.23 3.69
3841 3942 5.941058 TGTTCGTAGCAAGGGAAATATTGAA 59.059 36.000 0.00 0.00 0.00 2.69
4018 4125 1.619332 TGCATGAAAAAGGCAGCATGA 59.381 42.857 0.00 0.00 41.54 3.07
4056 4164 8.571336 CATTGGAAGTTCTATTTTGTCTGTTCT 58.429 33.333 2.25 0.00 0.00 3.01
4066 4174 9.996554 TCTATTTTGTCTGTTCTGTGAAAGATA 57.003 29.630 0.00 0.00 33.93 1.98
4074 4182 6.701841 TCTGTTCTGTGAAAGATACACACTTC 59.298 38.462 0.00 0.00 42.20 3.01
4126 4234 5.697633 ACAATTATGCTTTCACTTTGCTTGG 59.302 36.000 0.00 0.00 0.00 3.61
4201 4310 7.559486 TCTTTGTACAGCTGTCTGAATGATAT 58.441 34.615 25.56 0.00 42.95 1.63
4299 4408 9.865321 CAACAATTGTGAAGATTTTGATCCTAT 57.135 29.630 12.82 0.00 0.00 2.57
4493 4603 5.368256 TTCTGAGAACGGTAAGTGACTAC 57.632 43.478 0.00 0.00 0.00 2.73
4511 4621 5.601313 TGACTACAAAACTTCTACCTGTCCT 59.399 40.000 0.00 0.00 0.00 3.85
4520 4630 1.071699 TCTACCTGTCCTGGTTTGTGC 59.928 52.381 0.95 0.00 41.22 4.57
4526 4636 0.881796 GTCCTGGTTTGTGCTAAGGC 59.118 55.000 0.00 0.00 39.26 4.35
4576 4691 4.124238 TCGTACCATACAGCCTATTTTGC 58.876 43.478 0.00 0.00 0.00 3.68
4577 4692 3.874543 CGTACCATACAGCCTATTTTGCA 59.125 43.478 0.00 0.00 0.00 4.08
4578 4693 4.260620 CGTACCATACAGCCTATTTTGCAC 60.261 45.833 0.00 0.00 0.00 4.57
4580 4695 2.362077 CCATACAGCCTATTTTGCACCC 59.638 50.000 0.00 0.00 0.00 4.61
4724 5158 1.552792 GTTCTCTGCTGCTACTCCCTT 59.447 52.381 0.00 0.00 0.00 3.95
4906 5342 2.418368 TACATGTTCATGAGGCACCC 57.582 50.000 17.96 0.00 0.00 4.61
4963 5399 0.979665 TCTGCAGGAGGAACTGGAAG 59.020 55.000 15.13 0.00 41.55 3.46
5066 5502 1.379576 GCATGGGCAGCCTTCTTCT 60.380 57.895 12.43 0.00 40.72 2.85
5108 5544 1.414181 CCGAGTTCATCTAGGGCACAT 59.586 52.381 0.00 0.00 35.68 3.21
5142 5578 0.036765 TTGTTGCTCTACGGGCGAAT 60.037 50.000 0.00 0.00 0.00 3.34
5199 5635 2.677836 TCAGGCTCGAATGCATTGTTAC 59.322 45.455 18.59 0.72 34.04 2.50
5240 5676 6.714810 TGGTGTCTATGTTTGAAGCTGTTAAT 59.285 34.615 0.00 0.00 0.00 1.40
5395 5832 5.696270 TGTATCAGCTATTCTTGTTATGCGG 59.304 40.000 0.00 0.00 0.00 5.69
5399 5836 2.614057 GCTATTCTTGTTATGCGGCACT 59.386 45.455 4.03 0.00 0.00 4.40
5405 5842 4.314961 TCTTGTTATGCGGCACTATATGG 58.685 43.478 4.03 0.00 0.00 2.74
5426 5863 3.010420 GGCCATGAGGTCTTTGACTTAC 58.990 50.000 0.00 0.00 36.28 2.34
5442 5879 0.671472 TTACGACAGAGGACGCTCGA 60.671 55.000 0.00 0.00 35.61 4.04
5461 5898 6.423042 GCTCGAGTTTTAAAATAGAGCATCC 58.577 40.000 29.46 14.18 46.08 3.51
5616 6060 1.250840 AATGCCCTTTTCTCGTGCCC 61.251 55.000 0.00 0.00 0.00 5.36
5643 6087 2.086869 CCTTCCCATGCATATAAGCCG 58.913 52.381 0.00 0.00 0.00 5.52
5645 6089 0.322456 TCCCATGCATATAAGCCGGC 60.322 55.000 21.89 21.89 0.00 6.13
5667 6111 0.178992 CCACCTCCAACTTTGCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
5675 6119 3.125316 CCAACTTTGCTCCATGTTTGTG 58.875 45.455 0.00 0.00 0.00 3.33
5676 6120 2.514205 ACTTTGCTCCATGTTTGTGC 57.486 45.000 0.00 0.00 0.00 4.57
5677 6121 1.069049 ACTTTGCTCCATGTTTGTGCC 59.931 47.619 0.00 0.00 0.00 5.01
5678 6122 0.031857 TTTGCTCCATGTTTGTGCCG 59.968 50.000 0.00 0.00 0.00 5.69
5692 6136 0.731855 GTGCCGTCGTCCTTGTCTAC 60.732 60.000 0.00 0.00 0.00 2.59
5709 6153 3.808174 GTCTACCATCCGATTTAGCCAAC 59.192 47.826 0.00 0.00 0.00 3.77
5721 6165 5.051641 CGATTTAGCCAACTTAGATGTCGAC 60.052 44.000 9.11 9.11 0.00 4.20
5757 6201 1.259142 CCCATTGCTGCCATGGTTGA 61.259 55.000 25.66 0.00 33.75 3.18
5780 6225 1.067295 TCAGCTGACTTCATGGGGTT 58.933 50.000 13.74 0.00 0.00 4.11
5781 6226 1.425066 TCAGCTGACTTCATGGGGTTT 59.575 47.619 13.74 0.00 0.00 3.27
5813 6258 4.401022 TCACTTGCAAGATGGAGAACATT 58.599 39.130 32.50 2.52 40.72 2.71
5816 6261 2.799017 TGCAAGATGGAGAACATTGCT 58.201 42.857 9.33 0.00 41.65 3.91
5820 6265 3.446442 AGATGGAGAACATTGCTTGGT 57.554 42.857 0.00 0.00 40.72 3.67
5826 6271 0.244721 GAACATTGCTTGGTGGGAGC 59.755 55.000 0.00 0.00 40.53 4.70
5841 6286 3.044059 GAGCAGCGCGAATTTGCCT 62.044 57.895 12.10 7.38 38.58 4.75
5848 6293 0.652592 CGCGAATTTGCCTAGTCTGG 59.347 55.000 12.17 0.00 0.00 3.86
5860 6305 3.118592 GCCTAGTCTGGTTGTAGATGCTT 60.119 47.826 0.00 0.00 0.00 3.91
5862 6307 4.872691 CCTAGTCTGGTTGTAGATGCTTTG 59.127 45.833 0.00 0.00 0.00 2.77
5867 6312 2.107378 TGGTTGTAGATGCTTTGACCCA 59.893 45.455 0.00 0.00 0.00 4.51
5870 6315 3.281727 TGTAGATGCTTTGACCCATCC 57.718 47.619 0.00 0.00 38.85 3.51
5872 6317 0.620556 AGATGCTTTGACCCATCCGT 59.379 50.000 0.00 0.00 38.85 4.69
5887 6332 2.355837 CGTGGACAGTGTCGGTGG 60.356 66.667 16.89 2.85 32.65 4.61
5902 6347 1.384191 GTGGCCCCTCATTTGTCCT 59.616 57.895 0.00 0.00 0.00 3.85
5904 6349 0.623723 TGGCCCCTCATTTGTCCTAC 59.376 55.000 0.00 0.00 0.00 3.18
5913 6358 2.769663 TCATTTGTCCTACGTGCCCTAT 59.230 45.455 0.00 0.00 0.00 2.57
5915 6360 1.117150 TTGTCCTACGTGCCCTATCC 58.883 55.000 0.00 0.00 0.00 2.59
5916 6361 0.757935 TGTCCTACGTGCCCTATCCC 60.758 60.000 0.00 0.00 0.00 3.85
5930 6375 3.231818 CCTATCCCGTCACATCCTAGTT 58.768 50.000 0.00 0.00 0.00 2.24
5948 6393 4.942761 AGTTGGTTACGTACAAGGAGAA 57.057 40.909 0.00 0.00 0.00 2.87
5949 6394 5.479124 AGTTGGTTACGTACAAGGAGAAT 57.521 39.130 0.00 0.00 0.00 2.40
5950 6395 5.235516 AGTTGGTTACGTACAAGGAGAATG 58.764 41.667 0.00 0.00 0.00 2.67
5951 6396 4.196626 TGGTTACGTACAAGGAGAATGG 57.803 45.455 0.00 0.00 0.00 3.16
5952 6397 3.055675 TGGTTACGTACAAGGAGAATGGG 60.056 47.826 0.00 0.00 0.00 4.00
5953 6398 3.055602 GGTTACGTACAAGGAGAATGGGT 60.056 47.826 0.00 0.00 0.00 4.51
5954 6399 4.179298 GTTACGTACAAGGAGAATGGGTC 58.821 47.826 0.00 0.00 0.00 4.46
5955 6400 2.253610 ACGTACAAGGAGAATGGGTCA 58.746 47.619 0.00 0.00 0.00 4.02
5956 6401 2.028385 ACGTACAAGGAGAATGGGTCAC 60.028 50.000 0.00 0.00 0.00 3.67
5957 6402 2.677037 CGTACAAGGAGAATGGGTCACC 60.677 54.545 0.00 0.00 37.26 4.02
5959 6404 1.630878 ACAAGGAGAATGGGTCACCTC 59.369 52.381 0.00 0.00 45.77 3.85
5960 6405 0.905357 AAGGAGAATGGGTCACCTCG 59.095 55.000 0.00 0.00 45.77 4.63
5961 6406 0.041238 AGGAGAATGGGTCACCTCGA 59.959 55.000 0.00 0.00 43.28 4.04
5962 6407 0.175989 GGAGAATGGGTCACCTCGAC 59.824 60.000 0.00 0.00 44.57 4.20
5963 6408 0.179134 GAGAATGGGTCACCTCGACG 60.179 60.000 0.00 0.00 46.42 5.12
5964 6409 0.898789 AGAATGGGTCACCTCGACGT 60.899 55.000 0.00 0.00 46.42 4.34
5965 6410 0.736325 GAATGGGTCACCTCGACGTG 60.736 60.000 8.10 8.10 46.42 4.49
5966 6411 2.167398 AATGGGTCACCTCGACGTGG 62.167 60.000 14.19 14.19 46.42 4.94
5967 6412 4.736896 GGGTCACCTCGACGTGGC 62.737 72.222 15.59 11.93 46.42 5.01
5969 6414 4.736896 GTCACCTCGACGTGGCCC 62.737 72.222 15.59 0.60 34.19 5.80
5970 6415 4.988716 TCACCTCGACGTGGCCCT 62.989 66.667 15.59 0.00 34.36 5.19
5971 6416 4.436998 CACCTCGACGTGGCCCTC 62.437 72.222 15.59 0.00 0.00 4.30
5972 6417 4.680537 ACCTCGACGTGGCCCTCT 62.681 66.667 15.59 0.00 0.00 3.69
5973 6418 4.135153 CCTCGACGTGGCCCTCTG 62.135 72.222 0.00 0.00 0.00 3.35
5974 6419 4.135153 CTCGACGTGGCCCTCTGG 62.135 72.222 0.00 0.00 0.00 3.86
5975 6420 4.988716 TCGACGTGGCCCTCTGGT 62.989 66.667 0.00 0.00 0.00 4.00
5976 6421 4.742201 CGACGTGGCCCTCTGGTG 62.742 72.222 0.00 0.00 0.00 4.17
5977 6422 3.311110 GACGTGGCCCTCTGGTGA 61.311 66.667 0.00 0.00 0.00 4.02
5978 6423 2.847234 ACGTGGCCCTCTGGTGAA 60.847 61.111 0.00 0.00 0.00 3.18
5979 6424 2.358737 CGTGGCCCTCTGGTGAAC 60.359 66.667 0.00 0.00 0.00 3.18
5980 6425 2.883828 CGTGGCCCTCTGGTGAACT 61.884 63.158 0.00 0.00 0.00 3.01
5981 6426 1.302832 GTGGCCCTCTGGTGAACTG 60.303 63.158 0.00 0.00 0.00 3.16
5982 6427 1.461268 TGGCCCTCTGGTGAACTGA 60.461 57.895 0.00 0.00 0.00 3.41
5983 6428 1.003233 GGCCCTCTGGTGAACTGAC 60.003 63.158 0.00 0.00 0.00 3.51
5984 6429 1.754745 GCCCTCTGGTGAACTGACA 59.245 57.895 0.00 0.00 0.00 3.58
5985 6430 0.326264 GCCCTCTGGTGAACTGACAT 59.674 55.000 0.00 0.00 0.00 3.06
5986 6431 1.947678 GCCCTCTGGTGAACTGACATG 60.948 57.143 0.00 0.00 0.00 3.21
5987 6432 1.339438 CCCTCTGGTGAACTGACATGG 60.339 57.143 0.00 0.00 0.00 3.66
5988 6433 1.339438 CCTCTGGTGAACTGACATGGG 60.339 57.143 0.00 0.00 0.00 4.00
5989 6434 0.692476 TCTGGTGAACTGACATGGGG 59.308 55.000 0.00 0.00 0.00 4.96
5990 6435 0.401738 CTGGTGAACTGACATGGGGT 59.598 55.000 0.00 0.00 0.00 4.95
5992 6437 0.322546 GGTGAACTGACATGGGGTCC 60.323 60.000 0.00 0.00 46.38 4.46
5993 6438 0.322546 GTGAACTGACATGGGGTCCC 60.323 60.000 0.00 0.00 46.38 4.46
5994 6439 1.078426 GAACTGACATGGGGTCCCG 60.078 63.158 0.48 0.00 46.38 5.14
5995 6440 2.536997 GAACTGACATGGGGTCCCGG 62.537 65.000 0.48 0.00 46.38 5.73
5996 6441 4.489771 CTGACATGGGGTCCCGGC 62.490 72.222 0.48 0.00 46.38 6.13
6013 6458 4.323477 CCCGCCCCACTTGTTCGA 62.323 66.667 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.773860 TGTCATGACAAAACACACCAC 57.226 42.857 26.02 0.00 38.56 4.16
1 2 3.950395 TGATGTCATGACAAAACACACCA 59.050 39.130 31.00 15.28 45.41 4.17
2 3 4.566545 TGATGTCATGACAAAACACACC 57.433 40.909 31.00 13.23 45.41 4.16
15 16 2.634453 TGGCGACTATCCATGATGTCAT 59.366 45.455 0.00 0.00 36.96 3.06
16 17 2.038659 TGGCGACTATCCATGATGTCA 58.961 47.619 0.00 0.00 0.00 3.58
17 18 2.820059 TGGCGACTATCCATGATGTC 57.180 50.000 0.00 0.00 0.00 3.06
23 24 3.405831 CATGAACATGGCGACTATCCAT 58.594 45.455 6.87 0.00 44.70 3.41
24 25 2.837498 CATGAACATGGCGACTATCCA 58.163 47.619 6.87 0.00 38.09 3.41
35 36 1.478916 TGCAGATTGCCCATGAACATG 59.521 47.619 7.70 7.70 44.23 3.21
36 37 1.855295 TGCAGATTGCCCATGAACAT 58.145 45.000 0.00 0.00 44.23 2.71
37 38 1.630223 TTGCAGATTGCCCATGAACA 58.370 45.000 0.00 0.00 44.23 3.18
38 39 2.973694 ATTGCAGATTGCCCATGAAC 57.026 45.000 0.00 0.00 44.23 3.18
39 40 3.261137 TGAAATTGCAGATTGCCCATGAA 59.739 39.130 0.00 0.00 44.23 2.57
40 41 2.832733 TGAAATTGCAGATTGCCCATGA 59.167 40.909 0.00 0.00 44.23 3.07
41 42 3.254470 TGAAATTGCAGATTGCCCATG 57.746 42.857 0.00 0.00 44.23 3.66
42 43 3.985019 TTGAAATTGCAGATTGCCCAT 57.015 38.095 0.00 0.00 44.23 4.00
43 44 3.985019 ATTGAAATTGCAGATTGCCCA 57.015 38.095 0.00 0.00 44.23 5.36
44 45 5.413523 AGAAAATTGAAATTGCAGATTGCCC 59.586 36.000 0.00 0.00 44.23 5.36
45 46 6.490566 AGAAAATTGAAATTGCAGATTGCC 57.509 33.333 0.00 0.00 44.23 4.52
46 47 8.378421 GTCTAGAAAATTGAAATTGCAGATTGC 58.622 33.333 0.00 0.00 45.29 3.56
47 48 9.414295 TGTCTAGAAAATTGAAATTGCAGATTG 57.586 29.630 0.00 0.00 0.00 2.67
48 49 9.635520 CTGTCTAGAAAATTGAAATTGCAGATT 57.364 29.630 0.00 0.00 0.00 2.40
49 50 9.017509 TCTGTCTAGAAAATTGAAATTGCAGAT 57.982 29.630 0.00 0.00 0.00 2.90
50 51 8.394971 TCTGTCTAGAAAATTGAAATTGCAGA 57.605 30.769 0.00 0.00 0.00 4.26
51 52 9.125906 CTTCTGTCTAGAAAATTGAAATTGCAG 57.874 33.333 0.00 0.00 42.11 4.41
52 53 8.849168 TCTTCTGTCTAGAAAATTGAAATTGCA 58.151 29.630 0.00 0.00 42.11 4.08
53 54 9.683069 TTCTTCTGTCTAGAAAATTGAAATTGC 57.317 29.630 0.00 0.00 42.11 3.56
56 57 9.799106 TCCTTCTTCTGTCTAGAAAATTGAAAT 57.201 29.630 0.00 0.00 42.11 2.17
57 58 9.057089 GTCCTTCTTCTGTCTAGAAAATTGAAA 57.943 33.333 0.00 0.00 42.11 2.69
58 59 7.385205 CGTCCTTCTTCTGTCTAGAAAATTGAA 59.615 37.037 0.00 0.00 42.11 2.69
59 60 6.868864 CGTCCTTCTTCTGTCTAGAAAATTGA 59.131 38.462 0.00 0.00 42.11 2.57
60 61 6.868864 TCGTCCTTCTTCTGTCTAGAAAATTG 59.131 38.462 0.00 0.00 42.11 2.32
61 62 6.994221 TCGTCCTTCTTCTGTCTAGAAAATT 58.006 36.000 0.00 0.00 42.11 1.82
62 63 6.434652 TCTCGTCCTTCTTCTGTCTAGAAAAT 59.565 38.462 0.00 0.00 42.11 1.82
63 64 5.768662 TCTCGTCCTTCTTCTGTCTAGAAAA 59.231 40.000 0.00 0.00 42.11 2.29
64 65 5.314529 TCTCGTCCTTCTTCTGTCTAGAAA 58.685 41.667 0.00 0.00 42.11 2.52
65 66 4.907809 TCTCGTCCTTCTTCTGTCTAGAA 58.092 43.478 0.00 0.00 40.53 2.10
66 67 4.554960 TCTCGTCCTTCTTCTGTCTAGA 57.445 45.455 0.00 0.00 0.00 2.43
67 68 5.048643 TGTTTCTCGTCCTTCTTCTGTCTAG 60.049 44.000 0.00 0.00 0.00 2.43
68 69 4.825634 TGTTTCTCGTCCTTCTTCTGTCTA 59.174 41.667 0.00 0.00 0.00 2.59
69 70 3.637229 TGTTTCTCGTCCTTCTTCTGTCT 59.363 43.478 0.00 0.00 0.00 3.41
70 71 3.978687 TGTTTCTCGTCCTTCTTCTGTC 58.021 45.455 0.00 0.00 0.00 3.51
71 72 3.243907 CCTGTTTCTCGTCCTTCTTCTGT 60.244 47.826 0.00 0.00 0.00 3.41
72 73 3.005897 TCCTGTTTCTCGTCCTTCTTCTG 59.994 47.826 0.00 0.00 0.00 3.02
73 74 3.231818 TCCTGTTTCTCGTCCTTCTTCT 58.768 45.455 0.00 0.00 0.00 2.85
74 75 3.580731 CTCCTGTTTCTCGTCCTTCTTC 58.419 50.000 0.00 0.00 0.00 2.87
75 76 2.300437 CCTCCTGTTTCTCGTCCTTCTT 59.700 50.000 0.00 0.00 0.00 2.52
76 77 1.896465 CCTCCTGTTTCTCGTCCTTCT 59.104 52.381 0.00 0.00 0.00 2.85
77 78 1.893801 TCCTCCTGTTTCTCGTCCTTC 59.106 52.381 0.00 0.00 0.00 3.46
78 79 2.011122 TCCTCCTGTTTCTCGTCCTT 57.989 50.000 0.00 0.00 0.00 3.36
79 80 2.011122 TTCCTCCTGTTTCTCGTCCT 57.989 50.000 0.00 0.00 0.00 3.85
80 81 2.833631 TTTCCTCCTGTTTCTCGTCC 57.166 50.000 0.00 0.00 0.00 4.79
81 82 2.924290 CGATTTCCTCCTGTTTCTCGTC 59.076 50.000 0.00 0.00 0.00 4.20
82 83 2.353803 CCGATTTCCTCCTGTTTCTCGT 60.354 50.000 0.00 0.00 0.00 4.18
83 84 2.094182 TCCGATTTCCTCCTGTTTCTCG 60.094 50.000 0.00 0.00 0.00 4.04
84 85 3.195825 TCTCCGATTTCCTCCTGTTTCTC 59.804 47.826 0.00 0.00 0.00 2.87
85 86 3.173965 TCTCCGATTTCCTCCTGTTTCT 58.826 45.455 0.00 0.00 0.00 2.52
86 87 3.611766 TCTCCGATTTCCTCCTGTTTC 57.388 47.619 0.00 0.00 0.00 2.78
87 88 3.430929 CGATCTCCGATTTCCTCCTGTTT 60.431 47.826 0.00 0.00 41.76 2.83
88 89 2.101582 CGATCTCCGATTTCCTCCTGTT 59.898 50.000 0.00 0.00 41.76 3.16
89 90 1.683917 CGATCTCCGATTTCCTCCTGT 59.316 52.381 0.00 0.00 41.76 4.00
90 91 1.957177 TCGATCTCCGATTTCCTCCTG 59.043 52.381 0.00 0.00 43.23 3.86
91 92 2.366640 TCGATCTCCGATTTCCTCCT 57.633 50.000 0.00 0.00 43.23 3.69
100 101 1.022735 GCTAACAGGTCGATCTCCGA 58.977 55.000 0.00 0.00 46.35 4.55
101 102 1.025812 AGCTAACAGGTCGATCTCCG 58.974 55.000 0.00 0.00 40.25 4.63
102 103 2.166664 ACAAGCTAACAGGTCGATCTCC 59.833 50.000 0.00 0.00 0.00 3.71
103 104 3.440228 GACAAGCTAACAGGTCGATCTC 58.560 50.000 0.00 0.00 0.00 2.75
104 105 3.512033 GACAAGCTAACAGGTCGATCT 57.488 47.619 0.00 0.00 0.00 2.75
109 110 1.337821 CGACGACAAGCTAACAGGTC 58.662 55.000 0.00 0.00 0.00 3.85
110 111 0.666577 GCGACGACAAGCTAACAGGT 60.667 55.000 0.00 0.00 0.00 4.00
111 112 1.674611 CGCGACGACAAGCTAACAGG 61.675 60.000 0.00 0.00 0.00 4.00
112 113 1.674611 CCGCGACGACAAGCTAACAG 61.675 60.000 8.23 0.00 0.00 3.16
113 114 1.731613 CCGCGACGACAAGCTAACA 60.732 57.895 8.23 0.00 0.00 2.41
114 115 2.442188 CCCGCGACGACAAGCTAAC 61.442 63.158 8.23 0.00 0.00 2.34
115 116 2.126228 CCCGCGACGACAAGCTAA 60.126 61.111 8.23 0.00 0.00 3.09
116 117 4.124351 CCCCGCGACGACAAGCTA 62.124 66.667 8.23 0.00 0.00 3.32
119 120 4.675029 AACCCCCGCGACGACAAG 62.675 66.667 8.23 0.00 0.00 3.16
120 121 4.973055 CAACCCCCGCGACGACAA 62.973 66.667 8.23 0.00 0.00 3.18
147 148 3.541713 CTCTAGCGCCTCCCCACC 61.542 72.222 2.29 0.00 0.00 4.61
148 149 1.811645 GATCTCTAGCGCCTCCCCAC 61.812 65.000 2.29 0.00 0.00 4.61
149 150 1.531840 GATCTCTAGCGCCTCCCCA 60.532 63.158 2.29 0.00 0.00 4.96
150 151 1.228737 AGATCTCTAGCGCCTCCCC 60.229 63.158 2.29 0.00 0.00 4.81
151 152 1.531739 CCAGATCTCTAGCGCCTCCC 61.532 65.000 2.29 0.00 0.00 4.30
152 153 0.825840 ACCAGATCTCTAGCGCCTCC 60.826 60.000 2.29 0.00 0.00 4.30
153 154 0.596082 GACCAGATCTCTAGCGCCTC 59.404 60.000 2.29 0.00 0.00 4.70
154 155 0.825840 GGACCAGATCTCTAGCGCCT 60.826 60.000 2.29 0.00 0.00 5.52
155 156 1.663173 GGACCAGATCTCTAGCGCC 59.337 63.158 2.29 0.00 0.00 6.53
156 157 1.284408 CGGACCAGATCTCTAGCGC 59.716 63.158 0.00 0.00 0.00 5.92
157 158 0.820074 ACCGGACCAGATCTCTAGCG 60.820 60.000 9.46 0.00 0.00 4.26
158 159 1.067821 CAACCGGACCAGATCTCTAGC 59.932 57.143 9.46 0.00 0.00 3.42
159 160 1.067821 GCAACCGGACCAGATCTCTAG 59.932 57.143 9.46 0.00 0.00 2.43
160 161 1.112113 GCAACCGGACCAGATCTCTA 58.888 55.000 9.46 0.00 0.00 2.43
161 162 1.617947 GGCAACCGGACCAGATCTCT 61.618 60.000 9.46 0.00 0.00 3.10
162 163 1.153349 GGCAACCGGACCAGATCTC 60.153 63.158 9.46 0.00 0.00 2.75
163 164 1.918293 TGGCAACCGGACCAGATCT 60.918 57.895 9.46 0.00 0.00 2.75
164 165 1.745489 GTGGCAACCGGACCAGATC 60.745 63.158 9.46 0.00 36.38 2.75
165 166 2.351276 GTGGCAACCGGACCAGAT 59.649 61.111 9.46 0.00 36.38 2.90
166 167 4.308458 CGTGGCAACCGGACCAGA 62.308 66.667 9.46 0.00 36.38 3.86
178 179 2.281484 TTCTCTGGTTGCCGTGGC 60.281 61.111 3.30 3.30 42.35 5.01
179 180 1.672356 CCTTCTCTGGTTGCCGTGG 60.672 63.158 0.00 0.00 0.00 4.94
180 181 0.250295 TTCCTTCTCTGGTTGCCGTG 60.250 55.000 0.00 0.00 0.00 4.94
181 182 0.035458 CTTCCTTCTCTGGTTGCCGT 59.965 55.000 0.00 0.00 0.00 5.68
182 183 0.321671 TCTTCCTTCTCTGGTTGCCG 59.678 55.000 0.00 0.00 0.00 5.69
183 184 1.814793 GTCTTCCTTCTCTGGTTGCC 58.185 55.000 0.00 0.00 0.00 4.52
184 185 1.000955 TCGTCTTCCTTCTCTGGTTGC 59.999 52.381 0.00 0.00 0.00 4.17
185 186 3.257393 CATCGTCTTCCTTCTCTGGTTG 58.743 50.000 0.00 0.00 0.00 3.77
186 187 2.234908 CCATCGTCTTCCTTCTCTGGTT 59.765 50.000 0.00 0.00 0.00 3.67
187 188 1.827969 CCATCGTCTTCCTTCTCTGGT 59.172 52.381 0.00 0.00 0.00 4.00
188 189 2.100584 CTCCATCGTCTTCCTTCTCTGG 59.899 54.545 0.00 0.00 0.00 3.86
189 190 2.100584 CCTCCATCGTCTTCCTTCTCTG 59.899 54.545 0.00 0.00 0.00 3.35
190 191 2.291930 ACCTCCATCGTCTTCCTTCTCT 60.292 50.000 0.00 0.00 0.00 3.10
191 192 2.104170 ACCTCCATCGTCTTCCTTCTC 58.896 52.381 0.00 0.00 0.00 2.87
192 193 2.239681 ACCTCCATCGTCTTCCTTCT 57.760 50.000 0.00 0.00 0.00 2.85
193 194 2.362717 CCTACCTCCATCGTCTTCCTTC 59.637 54.545 0.00 0.00 0.00 3.46
194 195 2.389715 CCTACCTCCATCGTCTTCCTT 58.610 52.381 0.00 0.00 0.00 3.36
195 196 1.411787 CCCTACCTCCATCGTCTTCCT 60.412 57.143 0.00 0.00 0.00 3.36
196 197 1.041437 CCCTACCTCCATCGTCTTCC 58.959 60.000 0.00 0.00 0.00 3.46
197 198 1.041437 CCCCTACCTCCATCGTCTTC 58.959 60.000 0.00 0.00 0.00 2.87
198 199 0.635009 TCCCCTACCTCCATCGTCTT 59.365 55.000 0.00 0.00 0.00 3.01
199 200 0.861155 ATCCCCTACCTCCATCGTCT 59.139 55.000 0.00 0.00 0.00 4.18
200 201 1.258676 GATCCCCTACCTCCATCGTC 58.741 60.000 0.00 0.00 0.00 4.20
201 202 0.539901 CGATCCCCTACCTCCATCGT 60.540 60.000 0.00 0.00 33.29 3.73
202 203 0.251209 TCGATCCCCTACCTCCATCG 60.251 60.000 0.00 0.00 38.14 3.84
203 204 1.075698 TCTCGATCCCCTACCTCCATC 59.924 57.143 0.00 0.00 0.00 3.51
204 205 1.076350 CTCTCGATCCCCTACCTCCAT 59.924 57.143 0.00 0.00 0.00 3.41
205 206 0.478942 CTCTCGATCCCCTACCTCCA 59.521 60.000 0.00 0.00 0.00 3.86
206 207 0.251430 CCTCTCGATCCCCTACCTCC 60.251 65.000 0.00 0.00 0.00 4.30
207 208 0.479378 ACCTCTCGATCCCCTACCTC 59.521 60.000 0.00 0.00 0.00 3.85
208 209 1.706305 CTACCTCTCGATCCCCTACCT 59.294 57.143 0.00 0.00 0.00 3.08
209 210 1.272037 CCTACCTCTCGATCCCCTACC 60.272 61.905 0.00 0.00 0.00 3.18
210 211 1.704070 TCCTACCTCTCGATCCCCTAC 59.296 57.143 0.00 0.00 0.00 3.18
211 212 1.986631 CTCCTACCTCTCGATCCCCTA 59.013 57.143 0.00 0.00 0.00 3.53
212 213 0.774908 CTCCTACCTCTCGATCCCCT 59.225 60.000 0.00 0.00 0.00 4.79
213 214 0.772384 TCTCCTACCTCTCGATCCCC 59.228 60.000 0.00 0.00 0.00 4.81
214 215 2.040545 TCATCTCCTACCTCTCGATCCC 59.959 54.545 0.00 0.00 0.00 3.85
215 216 3.078837 GTCATCTCCTACCTCTCGATCC 58.921 54.545 0.00 0.00 0.00 3.36
216 217 2.739913 CGTCATCTCCTACCTCTCGATC 59.260 54.545 0.00 0.00 0.00 3.69
217 218 2.551287 CCGTCATCTCCTACCTCTCGAT 60.551 54.545 0.00 0.00 0.00 3.59
218 219 1.202663 CCGTCATCTCCTACCTCTCGA 60.203 57.143 0.00 0.00 0.00 4.04
219 220 1.231221 CCGTCATCTCCTACCTCTCG 58.769 60.000 0.00 0.00 0.00 4.04
220 221 0.955905 GCCGTCATCTCCTACCTCTC 59.044 60.000 0.00 0.00 0.00 3.20
221 222 0.820074 CGCCGTCATCTCCTACCTCT 60.820 60.000 0.00 0.00 0.00 3.69
222 223 1.655329 CGCCGTCATCTCCTACCTC 59.345 63.158 0.00 0.00 0.00 3.85
223 224 1.828660 CCGCCGTCATCTCCTACCT 60.829 63.158 0.00 0.00 0.00 3.08
224 225 2.728817 CCGCCGTCATCTCCTACC 59.271 66.667 0.00 0.00 0.00 3.18
225 226 2.027751 GCCGCCGTCATCTCCTAC 59.972 66.667 0.00 0.00 0.00 3.18
226 227 2.441348 TGCCGCCGTCATCTCCTA 60.441 61.111 0.00 0.00 0.00 2.94
227 228 3.842923 CTGCCGCCGTCATCTCCT 61.843 66.667 0.00 0.00 0.00 3.69
228 229 4.899239 CCTGCCGCCGTCATCTCC 62.899 72.222 0.00 0.00 0.00 3.71
229 230 4.148825 ACCTGCCGCCGTCATCTC 62.149 66.667 0.00 0.00 0.00 2.75
230 231 4.148825 GACCTGCCGCCGTCATCT 62.149 66.667 3.44 0.00 0.00 2.90
239 240 4.856801 CCCCATTCCGACCTGCCG 62.857 72.222 0.00 0.00 0.00 5.69
240 241 3.282374 AACCCCATTCCGACCTGCC 62.282 63.158 0.00 0.00 0.00 4.85
241 242 2.046285 CAACCCCATTCCGACCTGC 61.046 63.158 0.00 0.00 0.00 4.85
242 243 1.378514 CCAACCCCATTCCGACCTG 60.379 63.158 0.00 0.00 0.00 4.00
243 244 1.137594 TTCCAACCCCATTCCGACCT 61.138 55.000 0.00 0.00 0.00 3.85
244 245 0.679960 CTTCCAACCCCATTCCGACC 60.680 60.000 0.00 0.00 0.00 4.79
245 246 0.679960 CCTTCCAACCCCATTCCGAC 60.680 60.000 0.00 0.00 0.00 4.79
246 247 1.688811 CCTTCCAACCCCATTCCGA 59.311 57.895 0.00 0.00 0.00 4.55
247 248 2.052104 GCCTTCCAACCCCATTCCG 61.052 63.158 0.00 0.00 0.00 4.30
248 249 0.972471 CTGCCTTCCAACCCCATTCC 60.972 60.000 0.00 0.00 0.00 3.01
249 250 0.972471 CCTGCCTTCCAACCCCATTC 60.972 60.000 0.00 0.00 0.00 2.67
250 251 1.079073 CCTGCCTTCCAACCCCATT 59.921 57.895 0.00 0.00 0.00 3.16
251 252 2.772924 CCTGCCTTCCAACCCCAT 59.227 61.111 0.00 0.00 0.00 4.00
252 253 4.299796 GCCTGCCTTCCAACCCCA 62.300 66.667 0.00 0.00 0.00 4.96
278 279 2.807895 CACGACCTAACGCACCCG 60.808 66.667 0.00 0.00 41.14 5.28
279 280 3.116531 GCACGACCTAACGCACCC 61.117 66.667 0.00 0.00 36.70 4.61
280 281 3.475774 CGCACGACCTAACGCACC 61.476 66.667 0.00 0.00 36.70 5.01
281 282 3.475774 CCGCACGACCTAACGCAC 61.476 66.667 0.00 0.00 36.70 5.34
282 283 4.728102 CCCGCACGACCTAACGCA 62.728 66.667 0.00 0.00 36.70 5.24
284 285 4.728102 TGCCCGCACGACCTAACG 62.728 66.667 0.00 0.00 39.31 3.18
285 286 2.813908 CTGCCCGCACGACCTAAC 60.814 66.667 0.00 0.00 0.00 2.34
286 287 4.752879 GCTGCCCGCACGACCTAA 62.753 66.667 0.00 0.00 38.92 2.69
303 304 3.872728 TCAGGACGATCGACCGCG 61.873 66.667 26.66 21.99 35.21 6.46
304 305 2.278013 GTCAGGACGATCGACCGC 60.278 66.667 26.66 18.28 35.21 5.68
314 315 0.388649 AATCGCTCACACGTCAGGAC 60.389 55.000 0.00 0.00 0.00 3.85
315 316 0.317160 AAATCGCTCACACGTCAGGA 59.683 50.000 0.00 0.00 0.00 3.86
316 317 0.439985 CAAATCGCTCACACGTCAGG 59.560 55.000 0.00 0.00 0.00 3.86
317 318 1.136529 CACAAATCGCTCACACGTCAG 60.137 52.381 0.00 0.00 0.00 3.51
318 319 0.858583 CACAAATCGCTCACACGTCA 59.141 50.000 0.00 0.00 0.00 4.35
319 320 0.163788 CCACAAATCGCTCACACGTC 59.836 55.000 0.00 0.00 0.00 4.34
320 321 1.841663 GCCACAAATCGCTCACACGT 61.842 55.000 0.00 0.00 0.00 4.49
321 322 1.154413 GCCACAAATCGCTCACACG 60.154 57.895 0.00 0.00 0.00 4.49
322 323 0.385974 GTGCCACAAATCGCTCACAC 60.386 55.000 0.00 0.00 0.00 3.82
323 324 0.817229 TGTGCCACAAATCGCTCACA 60.817 50.000 0.00 0.00 32.78 3.58
324 325 0.385974 GTGTGCCACAAATCGCTCAC 60.386 55.000 0.00 0.00 40.83 3.51
325 326 0.817229 TGTGTGCCACAAATCGCTCA 60.817 50.000 0.00 0.00 41.69 4.26
326 327 1.948508 TGTGTGCCACAAATCGCTC 59.051 52.632 0.00 0.00 41.69 5.03
327 328 4.155950 TGTGTGCCACAAATCGCT 57.844 50.000 0.00 0.00 41.69 4.93
335 336 2.357034 ACGTCCGATGTGTGCCAC 60.357 61.111 0.00 0.00 34.56 5.01
336 337 2.356913 CACGTCCGATGTGTGCCA 60.357 61.111 11.96 0.00 30.72 4.92
339 340 3.478394 CCGCACGTCCGATGTGTG 61.478 66.667 22.30 22.30 43.29 3.82
340 341 4.735132 CCCGCACGTCCGATGTGT 62.735 66.667 19.58 0.00 37.43 3.72
400 401 1.966451 CCCTGTTTGGCACGGAGAC 60.966 63.158 0.00 0.00 32.74 3.36
401 402 2.429930 CCCTGTTTGGCACGGAGA 59.570 61.111 0.00 0.00 32.74 3.71
409 410 2.267351 TGTCGCATGCCCTGTTTGG 61.267 57.895 13.15 0.00 0.00 3.28
410 411 1.081242 GTGTCGCATGCCCTGTTTG 60.081 57.895 13.15 0.00 0.00 2.93
411 412 1.106351 TTGTGTCGCATGCCCTGTTT 61.106 50.000 13.15 0.00 0.00 2.83
412 413 1.528076 TTGTGTCGCATGCCCTGTT 60.528 52.632 13.15 0.00 0.00 3.16
413 414 2.112928 TTGTGTCGCATGCCCTGT 59.887 55.556 13.15 0.00 0.00 4.00
414 415 2.562912 GTTGTGTCGCATGCCCTG 59.437 61.111 13.15 0.00 0.00 4.45
415 416 2.672996 GGTTGTGTCGCATGCCCT 60.673 61.111 13.15 0.00 0.00 5.19
416 417 4.101790 CGGTTGTGTCGCATGCCC 62.102 66.667 13.15 4.35 0.00 5.36
423 424 0.992072 CATCTAGTGCGGTTGTGTCG 59.008 55.000 0.00 0.00 0.00 4.35
424 425 0.721718 GCATCTAGTGCGGTTGTGTC 59.278 55.000 2.28 0.00 45.23 3.67
425 426 2.840974 GCATCTAGTGCGGTTGTGT 58.159 52.632 2.28 0.00 45.23 3.72
434 435 1.070821 CACACGTGTGGCATCTAGTG 58.929 55.000 35.65 10.67 42.10 2.74
435 436 0.966179 TCACACGTGTGGCATCTAGT 59.034 50.000 39.88 5.48 45.65 2.57
436 437 3.812577 TCACACGTGTGGCATCTAG 57.187 52.632 39.88 18.65 45.65 2.43
443 444 1.719246 CGATAACTGTCACACGTGTGG 59.281 52.381 39.88 28.84 45.65 4.17
444 445 1.719246 CCGATAACTGTCACACGTGTG 59.281 52.381 37.04 37.04 46.91 3.82
445 446 1.933500 GCCGATAACTGTCACACGTGT 60.934 52.381 17.22 17.22 0.00 4.49
446 447 0.713883 GCCGATAACTGTCACACGTG 59.286 55.000 15.48 15.48 0.00 4.49
447 448 0.731514 CGCCGATAACTGTCACACGT 60.732 55.000 0.00 0.00 0.00 4.49
448 449 0.731514 ACGCCGATAACTGTCACACG 60.732 55.000 0.00 0.00 0.00 4.49
449 450 0.989890 GACGCCGATAACTGTCACAC 59.010 55.000 0.00 0.00 0.00 3.82
450 451 0.108992 GGACGCCGATAACTGTCACA 60.109 55.000 0.00 0.00 33.04 3.58
451 452 0.172803 AGGACGCCGATAACTGTCAC 59.827 55.000 0.00 0.00 33.04 3.67
452 453 0.892755 AAGGACGCCGATAACTGTCA 59.107 50.000 0.00 0.00 33.04 3.58
453 454 2.005971 AAAGGACGCCGATAACTGTC 57.994 50.000 0.00 0.00 0.00 3.51
454 455 2.467566 AAAAGGACGCCGATAACTGT 57.532 45.000 0.00 0.00 0.00 3.55
509 513 2.356278 GGGCTTGTGGCTGATCCA 59.644 61.111 0.00 0.00 44.18 3.41
570 574 2.746279 ATTCGGTATTTGGATGGCCA 57.254 45.000 8.56 8.56 44.17 5.36
585 590 7.145323 GTGTATTTATGGGAATTGGGAATTCG 58.855 38.462 0.00 0.00 46.45 3.34
708 721 1.270305 TGCTTCTTTCACTCGGTGGAG 60.270 52.381 4.52 4.03 46.13 3.86
718 731 2.473816 CTCTCGTGTGTGCTTCTTTCA 58.526 47.619 0.00 0.00 0.00 2.69
726 739 3.106407 GTCGCCTCTCGTGTGTGC 61.106 66.667 0.00 0.00 39.67 4.57
727 740 2.801162 CGTCGCCTCTCGTGTGTG 60.801 66.667 0.00 0.00 39.67 3.82
729 742 4.778415 CCCGTCGCCTCTCGTGTG 62.778 72.222 0.00 0.00 39.67 3.82
751 764 4.394712 CCACTGGCACCGAGGGAC 62.395 72.222 0.00 0.00 0.00 4.46
832 848 4.168291 GGAAGGCCAGGGAGAGCG 62.168 72.222 5.01 0.00 0.00 5.03
833 849 3.803162 GGGAAGGCCAGGGAGAGC 61.803 72.222 5.01 0.00 35.15 4.09
856 872 4.007644 CGCAGCACAGGGGAGACA 62.008 66.667 0.00 0.00 0.00 3.41
905 922 1.305623 GGTCGGGTAGAGGAGGACA 59.694 63.158 0.00 0.00 0.00 4.02
939 956 9.883142 AGAAGAATAACCTAGTCAAAGAATGAG 57.117 33.333 0.00 0.00 39.19 2.90
974 991 1.950909 ACGAGGACTGGATCGATCTTC 59.049 52.381 23.96 16.85 41.40 2.87
985 1002 1.406069 CCCCATTTCAGACGAGGACTG 60.406 57.143 0.00 0.00 36.80 3.51
1020 1037 0.468585 GCCCATCAATCTCCATGGCA 60.469 55.000 6.96 0.00 38.67 4.92
1089 1106 3.737850 ACCGTAGTAGATTCGGAGGTAG 58.262 50.000 9.75 0.00 46.05 3.18
1166 1183 6.357367 TCTACCTCCCATTTCAGCTTATTTC 58.643 40.000 0.00 0.00 0.00 2.17
1331 1359 8.443937 CCTTGACTTAGAGTTTTTATGCAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
1380 1410 4.881850 TCACAGACTGGGTTTCTCTTTTTC 59.118 41.667 4.24 0.00 0.00 2.29
1422 1453 3.884693 TGACCGTAGTTGTCTACAGTTCA 59.115 43.478 6.28 2.77 44.71 3.18
1463 1494 6.342906 TGAAGAGTTAGAAACGACCTTTGAA 58.657 36.000 0.00 0.00 36.23 2.69
1578 1609 2.002586 CTCAAACAGAGGGCACATACG 58.997 52.381 0.00 0.00 40.84 3.06
1597 1628 4.527816 TCAAATGCTGGGATTTAGTTTGCT 59.472 37.500 0.10 0.00 0.00 3.91
1676 1713 7.494298 ACATAACAATAACACTATGATCGTGCA 59.506 33.333 0.00 0.00 35.84 4.57
1704 1741 4.282957 TGCTTCCACATTTTGAGGCATAAA 59.717 37.500 0.00 0.00 38.48 1.40
1767 1804 4.233005 GAGGAAGCAAGCACAAGAAATTC 58.767 43.478 0.00 0.00 0.00 2.17
1809 1846 7.255277 GCAAAAGAGACTGAGTTTGAACCTAAT 60.255 37.037 0.00 0.00 33.70 1.73
1893 1935 6.485984 AGAGCTTTCCTGCAATTGTGATATAG 59.514 38.462 7.40 0.47 34.99 1.31
1928 1970 3.384146 TGCAAGCCACTTGAAGAAATCAA 59.616 39.130 11.38 0.00 43.42 2.57
1990 2032 4.550076 AGAGCAAGACAGTTAGCATCTT 57.450 40.909 0.00 0.00 32.87 2.40
2022 2064 8.306038 TGCTTTGCATCTACAGAAAACAATATT 58.694 29.630 0.00 0.00 31.71 1.28
2061 2103 1.299541 GACGCCCAATGTATGACTGG 58.700 55.000 0.00 0.00 0.00 4.00
2266 2309 6.238648 GGGCAATAACACACAGGTCATAATAC 60.239 42.308 0.00 0.00 0.00 1.89
2274 2317 2.373335 TTGGGCAATAACACACAGGT 57.627 45.000 0.00 0.00 0.00 4.00
2333 2377 3.780294 AGACATTATTACCAGACTGGGCA 59.220 43.478 25.34 11.65 43.37 5.36
2348 2392 6.001460 CCTTTCCACTGGTACAAAGACATTA 58.999 40.000 8.63 0.00 38.70 1.90
2357 2401 2.414612 AGTTCCCTTTCCACTGGTACA 58.585 47.619 0.00 0.00 0.00 2.90
2424 2468 1.808390 GATAACAGGACGCGCGGTT 60.808 57.895 35.22 27.69 0.00 4.44
2426 2470 1.082117 AAAGATAACAGGACGCGCGG 61.082 55.000 35.22 18.70 0.00 6.46
2456 2500 3.173668 TGACAACGTTCACACTTAGCT 57.826 42.857 0.00 0.00 0.00 3.32
2564 2608 8.599624 AAGTATCCAGGATTTTGATGACAATT 57.400 30.769 7.44 0.00 35.85 2.32
2627 2671 0.099968 ATCATGTGAATGCAGCGTGC 59.900 50.000 0.00 3.44 45.29 5.34
2676 2720 5.703130 ACCAAGAGAGTTAAAGATTCTGCAC 59.297 40.000 0.00 0.00 0.00 4.57
2722 2766 6.655078 ATCACCTGCAAAAACATACTTTCT 57.345 33.333 0.00 0.00 0.00 2.52
2829 2873 9.856488 GAAACAAAGAAAAGGTTCTCTTAAACT 57.144 29.630 0.00 0.00 43.59 2.66
2981 3025 0.750911 CAGAAAGATGGCTCAGGGGC 60.751 60.000 0.00 0.00 41.27 5.80
3124 3169 6.662414 ACATCACAATTCATACTAACACGG 57.338 37.500 0.00 0.00 0.00 4.94
3125 3170 8.180317 TGTACATCACAATTCATACTAACACG 57.820 34.615 0.00 0.00 32.95 4.49
3256 3301 0.115152 TCTTCTGGCACCTCTCCTCA 59.885 55.000 0.00 0.00 0.00 3.86
3280 3325 7.663827 TCTTACTTTCGTCTGGAATAAGTTCA 58.336 34.615 0.00 0.00 36.01 3.18
3393 3439 1.043116 CACGCCCTCTCAGGATGGTA 61.043 60.000 0.00 0.00 37.67 3.25
3620 3686 2.738846 CAACTCATCCTGACGGAAACTG 59.261 50.000 0.00 0.00 44.02 3.16
3626 3692 0.320683 TGCACAACTCATCCTGACGG 60.321 55.000 0.00 0.00 0.00 4.79
3628 3694 2.175878 ACTGCACAACTCATCCTGAC 57.824 50.000 0.00 0.00 0.00 3.51
3637 3703 4.960938 TCAGAGTGAATAACTGCACAACT 58.039 39.130 0.00 0.00 40.07 3.16
3638 3704 5.869753 ATCAGAGTGAATAACTGCACAAC 57.130 39.130 0.00 0.00 40.07 3.32
3674 3749 9.429359 CAGGGTAAGCTGAATTATAAGATGTAG 57.571 37.037 0.00 0.00 0.00 2.74
3796 3896 6.317789 ACATGGATCGGTATAATTTTGCTG 57.682 37.500 0.00 0.00 0.00 4.41
3814 3915 2.107950 TTCCCTTGCTACGAACATGG 57.892 50.000 0.00 0.00 33.29 3.66
3861 3962 8.151596 TGACACCTGATATACAACAACAGTTTA 58.848 33.333 0.00 0.00 0.00 2.01
4018 4125 5.129320 AGAACTTCCAATGGACAAAAAGCTT 59.871 36.000 0.00 0.00 0.00 3.74
4066 4174 8.840321 GTGGATGCATATATTTTAGAAGTGTGT 58.160 33.333 0.00 0.00 0.00 3.72
4126 4234 4.918810 ACATGGTTGAGTCCTTCAAAAC 57.081 40.909 0.00 0.00 46.85 2.43
4167 4275 7.171508 CAGACAGCTGTACAAAGAAAGAACATA 59.828 37.037 21.73 0.00 37.37 2.29
4168 4276 6.017605 CAGACAGCTGTACAAAGAAAGAACAT 60.018 38.462 21.73 0.00 37.37 2.71
4169 4277 5.294306 CAGACAGCTGTACAAAGAAAGAACA 59.706 40.000 21.73 0.00 37.37 3.18
4170 4278 5.523916 TCAGACAGCTGTACAAAGAAAGAAC 59.476 40.000 21.73 1.96 42.84 3.01
4171 4279 5.670485 TCAGACAGCTGTACAAAGAAAGAA 58.330 37.500 21.73 0.00 42.84 2.52
4186 4295 6.749118 GGTGACAAAAATATCATTCAGACAGC 59.251 38.462 0.00 0.00 0.00 4.40
4201 4310 7.332557 TGTTAGAAGTAGTGAGGTGACAAAAA 58.667 34.615 0.00 0.00 0.00 1.94
4240 4349 2.035626 CAAACACGCCCTGGGGAT 59.964 61.111 16.03 0.00 37.50 3.85
4363 4472 4.869215 TCAACAGGCACACATACATTTTG 58.131 39.130 0.00 0.00 0.00 2.44
4493 4603 4.086706 ACCAGGACAGGTAGAAGTTTTG 57.913 45.455 0.00 0.00 40.98 2.44
4511 4621 1.527148 TGCGCCTTAGCACAAACCA 60.527 52.632 4.18 0.00 42.92 3.67
4520 4630 6.422223 CAAGTTCTACAATTATGCGCCTTAG 58.578 40.000 4.18 0.00 0.00 2.18
4526 4636 6.746822 TCATTTGCAAGTTCTACAATTATGCG 59.253 34.615 0.00 0.00 35.18 4.73
4531 4641 7.094634 ACGAGATCATTTGCAAGTTCTACAATT 60.095 33.333 0.00 0.00 0.00 2.32
4585 4700 0.835941 CAGGATTGTCAGAGAGGGGG 59.164 60.000 0.00 0.00 0.00 5.40
4586 4701 0.179936 GCAGGATTGTCAGAGAGGGG 59.820 60.000 0.00 0.00 0.00 4.79
4587 4702 1.202330 AGCAGGATTGTCAGAGAGGG 58.798 55.000 0.00 0.00 0.00 4.30
4588 4703 3.008330 CAAAGCAGGATTGTCAGAGAGG 58.992 50.000 0.00 0.00 0.00 3.69
4589 4704 3.935315 TCAAAGCAGGATTGTCAGAGAG 58.065 45.455 0.00 0.00 0.00 3.20
4590 4705 4.356405 TTCAAAGCAGGATTGTCAGAGA 57.644 40.909 0.00 0.00 0.00 3.10
4591 4706 5.399858 CAATTCAAAGCAGGATTGTCAGAG 58.600 41.667 0.00 0.00 0.00 3.35
4592 4707 4.321452 GCAATTCAAAGCAGGATTGTCAGA 60.321 41.667 6.68 0.00 0.00 3.27
4593 4708 3.924686 GCAATTCAAAGCAGGATTGTCAG 59.075 43.478 6.68 0.00 0.00 3.51
4594 4709 3.321396 TGCAATTCAAAGCAGGATTGTCA 59.679 39.130 6.68 3.65 35.51 3.58
4595 4710 3.916761 TGCAATTCAAAGCAGGATTGTC 58.083 40.909 6.68 1.72 35.51 3.18
4621 5054 4.104738 ACTTTTCAAGGGATGTTCTCTCCA 59.895 41.667 0.00 0.00 34.24 3.86
4792 5226 6.823182 TGTTGTAGATGTTGGTATGATTCTGG 59.177 38.462 0.00 0.00 0.00 3.86
4945 5381 0.676151 GCTTCCAGTTCCTCCTGCAG 60.676 60.000 6.78 6.78 0.00 4.41
4963 5399 3.533913 GCTTTGCACTATAAGCGGC 57.466 52.632 5.16 0.00 37.60 6.53
5020 5456 2.413837 GCACTGTCTCCGTTGTACATT 58.586 47.619 0.00 0.00 0.00 2.71
5066 5502 1.549170 GAGTAGGCACCTCTCGGAAAA 59.451 52.381 0.00 0.00 0.00 2.29
5108 5544 6.182627 AGAGCAACAAATAGGATGAATGACA 58.817 36.000 0.00 0.00 0.00 3.58
5142 5578 2.864882 GCGGTAGCTGAACAGTTACACA 60.865 50.000 22.79 0.00 43.93 3.72
5199 5635 1.283793 CCACGCAAGAACAAGCTGG 59.716 57.895 0.00 0.00 43.62 4.85
5395 5832 1.352352 ACCTCATGGCCCATATAGTGC 59.648 52.381 0.00 0.00 36.63 4.40
5399 5836 3.980022 TCAAAGACCTCATGGCCCATATA 59.020 43.478 0.00 0.00 36.63 0.86
5405 5842 2.206576 AAGTCAAAGACCTCATGGCC 57.793 50.000 0.00 0.00 36.63 5.36
5426 5863 1.913451 AACTCGAGCGTCCTCTGTCG 61.913 60.000 13.61 0.00 35.90 4.35
5442 5879 7.574967 CGGTTGTGGATGCTCTATTTTAAAACT 60.575 37.037 1.97 0.00 0.00 2.66
5616 6060 1.987807 ATGCATGGGAAGGGAGGACG 61.988 60.000 0.00 0.00 0.00 4.79
5629 6073 0.443869 GACGCCGGCTTATATGCATG 59.556 55.000 26.68 7.01 34.04 4.06
5643 6087 1.228154 AAAGTTGGAGGTGGACGCC 60.228 57.895 0.00 0.00 39.86 5.68
5645 6089 0.535102 AGCAAAGTTGGAGGTGGACG 60.535 55.000 0.00 0.00 0.00 4.79
5667 6111 0.534203 AAGGACGACGGCACAAACAT 60.534 50.000 1.63 0.00 0.00 2.71
5675 6119 1.153881 GGTAGACAAGGACGACGGC 60.154 63.158 0.00 0.00 0.00 5.68
5676 6120 0.815734 ATGGTAGACAAGGACGACGG 59.184 55.000 0.00 0.00 0.00 4.79
5677 6121 1.202268 GGATGGTAGACAAGGACGACG 60.202 57.143 0.00 0.00 0.00 5.12
5678 6122 1.202268 CGGATGGTAGACAAGGACGAC 60.202 57.143 0.00 0.00 0.00 4.34
5692 6136 4.703897 TCTAAGTTGGCTAAATCGGATGG 58.296 43.478 0.00 0.00 0.00 3.51
5709 6153 4.341099 GGTACTTGACGTCGACATCTAAG 58.659 47.826 17.16 16.84 0.00 2.18
5721 6165 1.600638 GGGGAAGGGGTACTTGACG 59.399 63.158 0.00 0.00 40.21 4.35
5757 6201 2.092538 CCCCATGAAGTCAGCTGAAGAT 60.093 50.000 20.19 7.48 0.00 2.40
5780 6225 4.143543 TCTTGCAAGTGATGATGGTCAAA 58.856 39.130 25.19 0.00 0.00 2.69
5781 6226 3.753815 TCTTGCAAGTGATGATGGTCAA 58.246 40.909 25.19 0.00 0.00 3.18
5820 6265 2.359850 AAATTCGCGCTGCTCCCA 60.360 55.556 5.56 0.00 0.00 4.37
5826 6271 0.026803 GACTAGGCAAATTCGCGCTG 59.973 55.000 5.56 0.00 0.00 5.18
5831 6276 3.074412 ACAACCAGACTAGGCAAATTCG 58.926 45.455 0.00 0.00 0.00 3.34
5841 6286 5.479306 GTCAAAGCATCTACAACCAGACTA 58.521 41.667 0.00 0.00 0.00 2.59
5848 6293 3.378427 GGATGGGTCAAAGCATCTACAAC 59.622 47.826 0.00 0.00 0.00 3.32
5867 6312 1.906824 ACCGACACTGTCCACGGAT 60.907 57.895 18.72 5.48 46.94 4.18
5870 6315 2.355837 CCACCGACACTGTCCACG 60.356 66.667 3.50 0.00 0.00 4.94
5872 6317 3.936203 GGCCACCGACACTGTCCA 61.936 66.667 0.00 0.00 0.00 4.02
5887 6332 0.252197 ACGTAGGACAAATGAGGGGC 59.748 55.000 0.00 0.00 0.00 5.80
5904 6349 2.028125 ATGTGACGGGATAGGGCACG 62.028 60.000 0.00 0.00 41.30 5.34
5913 6358 1.191535 CCAACTAGGATGTGACGGGA 58.808 55.000 0.00 0.00 41.22 5.14
5915 6360 2.762535 AACCAACTAGGATGTGACGG 57.237 50.000 0.00 0.00 41.22 4.79
5916 6361 3.176708 CGTAACCAACTAGGATGTGACG 58.823 50.000 0.00 0.00 41.22 4.35
5930 6375 3.055675 CCCATTCTCCTTGTACGTAACCA 60.056 47.826 0.00 0.00 0.00 3.67
5948 6393 2.646175 CCACGTCGAGGTGACCCAT 61.646 63.158 33.43 0.00 45.23 4.00
5949 6394 3.299977 CCACGTCGAGGTGACCCA 61.300 66.667 33.43 0.00 45.23 4.51
5950 6395 4.736896 GCCACGTCGAGGTGACCC 62.737 72.222 33.43 19.51 45.23 4.46
5951 6396 4.736896 GGCCACGTCGAGGTGACC 62.737 72.222 33.43 29.03 45.23 4.02
5952 6397 4.736896 GGGCCACGTCGAGGTGAC 62.737 72.222 33.43 24.77 44.53 3.67
5953 6398 4.988716 AGGGCCACGTCGAGGTGA 62.989 66.667 33.43 0.00 40.38 4.02
5954 6399 4.436998 GAGGGCCACGTCGAGGTG 62.437 72.222 27.08 27.08 37.66 4.00
5955 6400 4.680537 AGAGGGCCACGTCGAGGT 62.681 66.667 6.18 4.63 36.64 3.85
5956 6401 4.135153 CAGAGGGCCACGTCGAGG 62.135 72.222 6.18 4.11 36.64 4.63
5957 6402 4.135153 CCAGAGGGCCACGTCGAG 62.135 72.222 6.18 0.00 36.64 4.04
5958 6403 4.988716 ACCAGAGGGCCACGTCGA 62.989 66.667 6.18 0.00 37.90 4.20
5959 6404 4.742201 CACCAGAGGGCCACGTCG 62.742 72.222 6.18 0.00 37.90 5.12
5960 6405 2.879233 TTCACCAGAGGGCCACGTC 61.879 63.158 6.18 0.00 37.90 4.34
5961 6406 2.847234 TTCACCAGAGGGCCACGT 60.847 61.111 6.18 0.00 37.90 4.49
5962 6407 2.358737 GTTCACCAGAGGGCCACG 60.359 66.667 6.18 0.00 37.90 4.94
5963 6408 1.302832 CAGTTCACCAGAGGGCCAC 60.303 63.158 6.18 0.00 37.90 5.01
5964 6409 1.461268 TCAGTTCACCAGAGGGCCA 60.461 57.895 6.18 0.00 37.90 5.36
5965 6410 1.003233 GTCAGTTCACCAGAGGGCC 60.003 63.158 0.00 0.00 37.90 5.80
5966 6411 0.326264 ATGTCAGTTCACCAGAGGGC 59.674 55.000 0.00 0.00 37.90 5.19
5967 6412 1.339438 CCATGTCAGTTCACCAGAGGG 60.339 57.143 0.00 0.00 41.29 4.30
5968 6413 1.339438 CCCATGTCAGTTCACCAGAGG 60.339 57.143 0.00 0.00 0.00 3.69
5969 6414 1.339438 CCCCATGTCAGTTCACCAGAG 60.339 57.143 0.00 0.00 0.00 3.35
5970 6415 0.692476 CCCCATGTCAGTTCACCAGA 59.308 55.000 0.00 0.00 0.00 3.86
5971 6416 0.401738 ACCCCATGTCAGTTCACCAG 59.598 55.000 0.00 0.00 0.00 4.00
5972 6417 0.400213 GACCCCATGTCAGTTCACCA 59.600 55.000 0.00 0.00 43.85 4.17
5973 6418 0.322546 GGACCCCATGTCAGTTCACC 60.323 60.000 0.00 0.00 46.38 4.02
5974 6419 0.322546 GGGACCCCATGTCAGTTCAC 60.323 60.000 0.00 0.00 46.38 3.18
5975 6420 1.836999 CGGGACCCCATGTCAGTTCA 61.837 60.000 4.46 0.00 46.38 3.18
5976 6421 1.078426 CGGGACCCCATGTCAGTTC 60.078 63.158 4.46 0.00 46.38 3.01
5977 6422 2.602676 CCGGGACCCCATGTCAGTT 61.603 63.158 4.46 0.00 46.38 3.16
5978 6423 3.009115 CCGGGACCCCATGTCAGT 61.009 66.667 4.46 0.00 46.38 3.41
5979 6424 4.489771 GCCGGGACCCCATGTCAG 62.490 72.222 4.46 0.00 46.38 3.51
5996 6441 4.323477 TCGAACAAGTGGGGCGGG 62.323 66.667 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.