Multiple sequence alignment - TraesCS1B01G240000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G240000 chr1B 100.000 2118 0 0 1001 3118 427780494 427778377 0.000000e+00 3912
1 TraesCS1B01G240000 chr1B 100.000 465 0 0 1 465 427781494 427781030 0.000000e+00 859
2 TraesCS1B01G240000 chr1B 92.019 213 13 3 2891 3101 427628043 427627833 2.350000e-76 296
3 TraesCS1B01G240000 chr1B 87.647 170 15 4 2934 3101 427534805 427534640 3.170000e-45 193
4 TraesCS1B01G240000 chr1B 90.909 88 6 1 2402 2487 427778983 427778896 1.960000e-22 117
5 TraesCS1B01G240000 chr1B 90.909 88 6 1 2512 2599 427779093 427779008 1.960000e-22 117
6 TraesCS1B01G240000 chr1D 86.894 1465 110 48 1001 2408 315647739 315646300 0.000000e+00 1567
7 TraesCS1B01G240000 chr1D 95.238 231 9 1 235 465 315648017 315647789 6.350000e-97 364
8 TraesCS1B01G240000 chr1D 91.549 213 14 3 2891 3101 315645922 315645712 1.090000e-74 291
9 TraesCS1B01G240000 chr1A 85.628 1489 139 36 1001 2445 396289724 396288267 0.000000e+00 1495
10 TraesCS1B01G240000 chr1A 94.161 274 9 3 192 465 396290040 396289774 8.050000e-111 411
11 TraesCS1B01G240000 chr1A 83.710 221 14 5 1 200 396291498 396291279 4.100000e-44 189
12 TraesCS1B01G240000 chr6B 87.895 570 40 8 1087 1631 208498485 208497920 0.000000e+00 643
13 TraesCS1B01G240000 chr6B 84.000 225 25 7 1708 1923 208497919 208497697 4.080000e-49 206
14 TraesCS1B01G240000 chr3D 94.488 127 7 0 1081 1207 28957729 28957855 2.450000e-46 196
15 TraesCS1B01G240000 chr3D 97.436 78 2 0 1889 1966 28957855 28957932 1.950000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G240000 chr1B 427778377 427781494 3117 True 1251.250000 3912 95.4545 1 3118 4 chr1B.!!$R3 3117
1 TraesCS1B01G240000 chr1D 315645712 315648017 2305 True 740.666667 1567 91.2270 235 3101 3 chr1D.!!$R1 2866
2 TraesCS1B01G240000 chr1A 396288267 396291498 3231 True 698.333333 1495 87.8330 1 2445 3 chr1A.!!$R1 2444
3 TraesCS1B01G240000 chr6B 208497697 208498485 788 True 424.500000 643 85.9475 1087 1923 2 chr6B.!!$R1 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.601558 TCGTGGAAGCAGGTGTACTC 59.398 55.0 0.0 0.0 0.00 2.59 F
282 1551 0.671472 GCCCATGCAAAGAAGTTGGC 60.671 55.0 0.0 0.0 37.73 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 2912 0.178995 TGATTGGGCACTGCAGTTCA 60.179 50.000 18.94 14.63 0.0 3.18 R
2274 3605 1.425066 TGGGGAGCTCACAGAAACATT 59.575 47.619 19.73 0.00 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.829507 TTGTATTGTCCTTGATGTTTTGAATTT 57.170 25.926 0.00 0.00 0.00 1.82
38 39 9.597170 TGATGTTTTGAATTTCTTTTGATGTCA 57.403 25.926 0.00 0.00 0.00 3.58
54 55 3.326836 TGTCATGTTATCGTGGAAGCA 57.673 42.857 0.00 0.00 0.00 3.91
58 59 2.093306 TGTTATCGTGGAAGCAGGTG 57.907 50.000 0.00 0.00 0.00 4.00
61 62 2.928116 GTTATCGTGGAAGCAGGTGTAC 59.072 50.000 0.00 0.00 0.00 2.90
63 64 0.601558 TCGTGGAAGCAGGTGTACTC 59.398 55.000 0.00 0.00 0.00 2.59
67 68 2.744202 GTGGAAGCAGGTGTACTCAATG 59.256 50.000 0.00 0.00 0.00 2.82
70 71 2.370281 AGCAGGTGTACTCAATGTCG 57.630 50.000 0.00 0.00 0.00 4.35
79 80 9.524106 CAGGTGTACTCAATGTCGTATTTATAA 57.476 33.333 0.00 0.00 0.00 0.98
123 124 9.336171 GAGAAAAACAGAGAAATAGATGCCTAT 57.664 33.333 0.00 0.00 37.19 2.57
176 198 0.684479 ACTCTATGAGCGTCCCTGCA 60.684 55.000 0.00 0.00 37.31 4.41
181 203 1.549203 ATGAGCGTCCCTGCAAAAAT 58.451 45.000 0.00 0.00 37.31 1.82
209 1478 2.047769 CATTTTACCAACGGTTGCACG 58.952 47.619 15.31 4.83 37.09 5.34
255 1524 3.472283 TTTAGCAGTGGGTTGTTACGA 57.528 42.857 0.00 0.00 0.00 3.43
282 1551 0.671472 GCCCATGCAAAGAAGTTGGC 60.671 55.000 0.00 0.00 37.73 4.52
307 1576 2.203070 GACTGGTAGCATGGGCCG 60.203 66.667 0.00 0.00 42.56 6.13
353 1622 2.297895 CCCGTGGGTCTGGAATGGA 61.298 63.158 0.00 0.00 0.00 3.41
428 1697 1.680338 ATAAAACCAGGCATCGAGGC 58.320 50.000 14.84 14.84 44.61 4.70
1030 2299 1.519455 CGCTTCACGTCTCATCCCC 60.519 63.158 0.00 0.00 36.87 4.81
1039 2308 1.001631 TCTCATCCCCTCGCCTCAA 59.998 57.895 0.00 0.00 0.00 3.02
1052 2321 0.737715 GCCTCAACTGAATCGCTCGT 60.738 55.000 0.00 0.00 0.00 4.18
1266 2540 9.255304 GATCCATAACTAATCTCTGTTCTGTTC 57.745 37.037 0.00 0.00 0.00 3.18
1312 2593 6.144402 GCTGTTTTTGTCATGGATAACTGTTG 59.856 38.462 2.69 0.00 0.00 3.33
1316 2597 3.760738 TGTCATGGATAACTGTTGGCAA 58.239 40.909 2.69 0.00 0.00 4.52
1318 2599 4.771577 TGTCATGGATAACTGTTGGCAATT 59.228 37.500 1.92 0.00 0.00 2.32
1343 2633 7.997773 ATCTGGTTTAGTTAGTTTCTTTCCC 57.002 36.000 0.00 0.00 0.00 3.97
1367 2657 6.183360 CCGCAAATATCTGTAATCATGCTAGG 60.183 42.308 0.00 0.00 0.00 3.02
1375 2665 6.519382 TCTGTAATCATGCTAGGAATGTGAG 58.481 40.000 0.00 0.00 0.00 3.51
1400 2690 8.157476 AGTCTGTTATGGACAAATTGAAGTACT 58.843 33.333 0.00 0.00 37.93 2.73
1403 2693 9.436957 CTGTTATGGACAAATTGAAGTACTACT 57.563 33.333 0.00 0.00 37.93 2.57
1437 2727 6.320418 TGAGGTAGCATTGTTCGATTCTAGTA 59.680 38.462 0.00 0.00 0.00 1.82
1485 2775 6.509418 TCTGTTGTTACCTTGGATAATTGC 57.491 37.500 0.00 0.00 0.00 3.56
1604 2912 8.506168 TTATTCCGTAGATTTGATTTGAGCTT 57.494 30.769 0.00 0.00 0.00 3.74
1633 2945 3.113745 CCCAATCACGCTGGCATC 58.886 61.111 0.00 0.00 32.10 3.91
1636 2948 1.368345 CCAATCACGCTGGCATCGAA 61.368 55.000 18.47 5.42 0.00 3.71
1640 2952 1.014044 TCACGCTGGCATCGAAGTTC 61.014 55.000 18.47 0.00 0.00 3.01
1652 2964 5.706369 GGCATCGAAGTTCTACTCTAGGATA 59.294 44.000 0.56 0.00 0.00 2.59
1654 2966 7.094118 GGCATCGAAGTTCTACTCTAGGATATT 60.094 40.741 0.56 0.00 0.00 1.28
1674 2986 9.520204 GGATATTGTCTTTGAATTGGTATGTTG 57.480 33.333 0.00 0.00 0.00 3.33
1684 2998 5.351189 TGAATTGGTATGTTGAGTGATGTCG 59.649 40.000 0.00 0.00 0.00 4.35
1721 3036 7.979444 ATACTTAGCTTGTGTTAGAGCAAAA 57.021 32.000 0.00 0.00 41.31 2.44
1725 3040 5.175090 AGCTTGTGTTAGAGCAAAACTTC 57.825 39.130 0.00 0.00 41.31 3.01
1760 3079 5.419155 TGTCTGTTACCCACATTTTGTTTCA 59.581 36.000 0.00 0.00 33.76 2.69
1762 3081 6.640907 GTCTGTTACCCACATTTTGTTTCATC 59.359 38.462 0.00 0.00 33.76 2.92
1771 3090 4.837860 ACATTTTGTTTCATCTGGCCCTTA 59.162 37.500 0.00 0.00 0.00 2.69
1775 3094 8.859090 CATTTTGTTTCATCTGGCCCTTATATA 58.141 33.333 0.00 0.00 0.00 0.86
1776 3095 8.830915 TTTTGTTTCATCTGGCCCTTATATAA 57.169 30.769 0.00 0.00 0.00 0.98
1778 3097 6.303839 TGTTTCATCTGGCCCTTATATAACC 58.696 40.000 0.00 0.00 0.00 2.85
1781 3103 8.329502 GTTTCATCTGGCCCTTATATAACCTAT 58.670 37.037 0.00 0.00 0.00 2.57
1838 3169 8.246180 AGTTTAGCCTGTGAAATATTTGTGATG 58.754 33.333 5.17 0.00 0.00 3.07
1986 3317 5.477291 AGAAGTAAGATGGACGAGTTTCTGA 59.523 40.000 0.00 0.00 0.00 3.27
2031 3362 4.567159 CGCTAGGATCTACTGTTTTGAACC 59.433 45.833 0.00 0.00 0.00 3.62
2032 3363 5.624738 CGCTAGGATCTACTGTTTTGAACCT 60.625 44.000 10.13 10.13 36.97 3.50
2033 3364 5.582665 GCTAGGATCTACTGTTTTGAACCTG 59.417 44.000 13.17 7.61 35.22 4.00
2121 3452 4.992951 GGATTGGAAATGATATTTGCAGCC 59.007 41.667 8.18 9.84 31.61 4.85
2141 3472 7.013655 TGCAGCCTTATGAGAATTTCTTTATCC 59.986 37.037 0.00 0.00 0.00 2.59
2195 3526 4.206404 GCATTGAGCATTCGATTTGATGTG 59.794 41.667 0.37 0.00 44.79 3.21
2196 3527 4.359971 TTGAGCATTCGATTTGATGTGG 57.640 40.909 0.37 0.00 0.00 4.17
2197 3528 3.346315 TGAGCATTCGATTTGATGTGGT 58.654 40.909 0.37 0.00 0.00 4.16
2203 3534 5.861251 GCATTCGATTTGATGTGGTTGTTTA 59.139 36.000 0.37 0.00 0.00 2.01
2213 3544 7.144722 TGATGTGGTTGTTTATTCATCAGTC 57.855 36.000 0.00 0.00 37.38 3.51
2227 3558 7.856145 ATTCATCAGTCATCTTTACTTGGAC 57.144 36.000 0.00 0.00 0.00 4.02
2234 3565 6.176183 AGTCATCTTTACTTGGACTGGAATG 58.824 40.000 0.00 0.00 37.43 2.67
2235 3566 5.940470 GTCATCTTTACTTGGACTGGAATGT 59.060 40.000 0.00 0.00 0.00 2.71
2245 3576 4.520179 TGGACTGGAATGTGAATGATCTG 58.480 43.478 0.00 0.00 0.00 2.90
2253 3584 5.278169 GGAATGTGAATGATCTGGCATGTAC 60.278 44.000 0.00 0.00 0.00 2.90
2254 3585 3.197265 TGTGAATGATCTGGCATGTACG 58.803 45.455 0.00 0.00 0.00 3.67
2255 3586 3.198068 GTGAATGATCTGGCATGTACGT 58.802 45.455 0.00 0.00 0.00 3.57
2256 3587 4.142049 TGTGAATGATCTGGCATGTACGTA 60.142 41.667 0.00 0.00 0.00 3.57
2257 3588 4.991056 GTGAATGATCTGGCATGTACGTAT 59.009 41.667 0.00 0.00 0.00 3.06
2263 3594 3.945346 TCTGGCATGTACGTATTTGGTT 58.055 40.909 0.00 0.00 0.00 3.67
2269 3600 5.318349 GCATGTACGTATTTGGTTGTACAC 58.682 41.667 0.00 0.00 46.84 2.90
2274 3605 4.885413 ACGTATTTGGTTGTACACTAGCA 58.115 39.130 0.00 0.00 0.00 3.49
2280 3611 6.458232 TTTGGTTGTACACTAGCAATGTTT 57.542 33.333 11.77 0.00 38.44 2.83
2293 3624 1.815003 CAATGTTTCTGTGAGCTCCCC 59.185 52.381 12.15 2.07 0.00 4.81
2294 3625 1.067295 ATGTTTCTGTGAGCTCCCCA 58.933 50.000 12.15 7.14 0.00 4.96
2296 3627 1.271543 TGTTTCTGTGAGCTCCCCATG 60.272 52.381 12.15 3.01 0.00 3.66
2304 3635 2.821366 GCTCCCCATGTGCTGACG 60.821 66.667 0.00 0.00 0.00 4.35
2305 3636 2.665000 CTCCCCATGTGCTGACGT 59.335 61.111 0.00 0.00 0.00 4.34
2333 3668 5.851177 GGTTCAAAACATGATAACAGTGACG 59.149 40.000 0.00 0.00 38.03 4.35
2347 3682 4.758688 ACAGTGACGCAGATGATCAAATA 58.241 39.130 0.00 0.00 0.00 1.40
2350 3685 4.807834 AGTGACGCAGATGATCAAATACAG 59.192 41.667 0.00 0.00 0.00 2.74
2353 3688 2.810274 CGCAGATGATCAAATACAGGGG 59.190 50.000 0.00 0.00 0.00 4.79
2373 3708 4.173256 GGGAAGCAATTGGTTGATTAACG 58.827 43.478 26.47 0.00 43.44 3.18
2382 3717 7.540745 GCAATTGGTTGATTAACGTTTGACTAT 59.459 33.333 5.91 0.00 37.53 2.12
2383 3718 9.061610 CAATTGGTTGATTAACGTTTGACTATC 57.938 33.333 5.91 3.41 37.53 2.08
2402 3737 8.369424 TGACTATCTAGTAGTAGATCACACCTC 58.631 40.741 21.01 9.83 41.47 3.85
2414 3749 2.256306 TCACACCTCTATGAAGCACCA 58.744 47.619 0.00 0.00 0.00 4.17
2423 3758 6.769822 ACCTCTATGAAGCACCATAAGATTTG 59.230 38.462 0.00 0.00 0.00 2.32
2426 3761 6.994496 TCTATGAAGCACCATAAGATTTGAGG 59.006 38.462 0.00 0.00 0.00 3.86
2428 3763 4.943705 TGAAGCACCATAAGATTTGAGGTC 59.056 41.667 0.00 0.00 0.00 3.85
2429 3764 4.851639 AGCACCATAAGATTTGAGGTCT 57.148 40.909 0.00 0.00 0.00 3.85
2430 3765 5.184892 AGCACCATAAGATTTGAGGTCTT 57.815 39.130 0.00 0.00 39.19 3.01
2445 3780 6.729690 TGAGGTCTTCATTTCAACCAAATT 57.270 33.333 0.00 0.00 31.79 1.82
2446 3781 7.831691 TGAGGTCTTCATTTCAACCAAATTA 57.168 32.000 0.00 0.00 31.79 1.40
2447 3782 8.243961 TGAGGTCTTCATTTCAACCAAATTAA 57.756 30.769 0.00 0.00 31.79 1.40
2448 3783 8.359642 TGAGGTCTTCATTTCAACCAAATTAAG 58.640 33.333 0.00 0.00 37.17 1.85
2449 3784 8.250143 AGGTCTTCATTTCAACCAAATTAAGT 57.750 30.769 0.00 0.00 37.15 2.24
2450 3785 8.143835 AGGTCTTCATTTCAACCAAATTAAGTG 58.856 33.333 0.00 0.00 37.15 3.16
2451 3786 7.095649 GGTCTTCATTTCAACCAAATTAAGTGC 60.096 37.037 0.00 0.00 37.15 4.40
2452 3787 7.437862 GTCTTCATTTCAACCAAATTAAGTGCA 59.562 33.333 0.00 0.00 37.15 4.57
2453 3788 7.652909 TCTTCATTTCAACCAAATTAAGTGCAG 59.347 33.333 0.00 0.00 37.15 4.41
2454 3789 6.222389 TCATTTCAACCAAATTAAGTGCAGG 58.778 36.000 0.00 0.00 31.79 4.85
2455 3790 5.606348 TTTCAACCAAATTAAGTGCAGGT 57.394 34.783 0.00 0.00 0.00 4.00
2456 3791 4.846779 TCAACCAAATTAAGTGCAGGTC 57.153 40.909 0.00 0.00 0.00 3.85
2457 3792 4.211125 TCAACCAAATTAAGTGCAGGTCA 58.789 39.130 0.00 0.00 0.00 4.02
2458 3793 4.646945 TCAACCAAATTAAGTGCAGGTCAA 59.353 37.500 0.00 0.00 0.00 3.18
2459 3794 4.853924 ACCAAATTAAGTGCAGGTCAAG 57.146 40.909 0.00 0.00 0.00 3.02
2460 3795 4.215109 ACCAAATTAAGTGCAGGTCAAGT 58.785 39.130 0.00 0.00 0.00 3.16
2461 3796 5.381757 ACCAAATTAAGTGCAGGTCAAGTA 58.618 37.500 0.00 0.00 0.00 2.24
2462 3797 5.240844 ACCAAATTAAGTGCAGGTCAAGTAC 59.759 40.000 0.00 0.00 0.00 2.73
2463 3798 5.240623 CCAAATTAAGTGCAGGTCAAGTACA 59.759 40.000 0.00 0.00 0.00 2.90
2464 3799 6.071952 CCAAATTAAGTGCAGGTCAAGTACAT 60.072 38.462 0.00 0.00 0.00 2.29
2465 3800 6.500684 AATTAAGTGCAGGTCAAGTACATG 57.499 37.500 0.00 0.00 42.81 3.21
2466 3801 2.479566 AGTGCAGGTCAAGTACATGG 57.520 50.000 0.00 0.00 40.27 3.66
2467 3802 1.699634 AGTGCAGGTCAAGTACATGGT 59.300 47.619 0.00 0.00 40.27 3.55
2468 3803 2.106511 AGTGCAGGTCAAGTACATGGTT 59.893 45.455 0.00 0.00 40.27 3.67
2469 3804 2.884639 GTGCAGGTCAAGTACATGGTTT 59.115 45.455 0.00 0.00 40.27 3.27
2470 3805 4.069304 GTGCAGGTCAAGTACATGGTTTA 58.931 43.478 0.00 0.00 40.27 2.01
2471 3806 4.154195 GTGCAGGTCAAGTACATGGTTTAG 59.846 45.833 0.00 0.00 40.27 1.85
2472 3807 4.202419 TGCAGGTCAAGTACATGGTTTAGT 60.202 41.667 0.00 0.00 40.27 2.24
2473 3808 4.760204 GCAGGTCAAGTACATGGTTTAGTT 59.240 41.667 0.00 0.00 40.27 2.24
2474 3809 5.106673 GCAGGTCAAGTACATGGTTTAGTTC 60.107 44.000 0.00 0.00 40.27 3.01
2475 3810 6.231211 CAGGTCAAGTACATGGTTTAGTTCT 58.769 40.000 0.00 0.00 36.23 3.01
2476 3811 6.369065 CAGGTCAAGTACATGGTTTAGTTCTC 59.631 42.308 0.00 0.00 36.23 2.87
2477 3812 6.042781 AGGTCAAGTACATGGTTTAGTTCTCA 59.957 38.462 0.00 0.00 0.00 3.27
2478 3813 6.369065 GGTCAAGTACATGGTTTAGTTCTCAG 59.631 42.308 0.00 0.00 0.00 3.35
2479 3814 7.152645 GTCAAGTACATGGTTTAGTTCTCAGA 58.847 38.462 0.00 0.00 0.00 3.27
2480 3815 7.116519 GTCAAGTACATGGTTTAGTTCTCAGAC 59.883 40.741 0.00 0.00 0.00 3.51
2481 3816 6.038997 AGTACATGGTTTAGTTCTCAGACC 57.961 41.667 0.00 0.00 0.00 3.85
2482 3817 5.780793 AGTACATGGTTTAGTTCTCAGACCT 59.219 40.000 0.00 0.00 0.00 3.85
2483 3818 4.899502 ACATGGTTTAGTTCTCAGACCTG 58.100 43.478 0.00 0.00 0.00 4.00
2484 3819 4.256920 CATGGTTTAGTTCTCAGACCTGG 58.743 47.826 0.00 0.00 0.00 4.45
2485 3820 2.637872 TGGTTTAGTTCTCAGACCTGGG 59.362 50.000 0.00 0.00 0.00 4.45
2486 3821 2.027100 GGTTTAGTTCTCAGACCTGGGG 60.027 54.545 0.00 0.00 0.00 4.96
2487 3822 2.638363 GTTTAGTTCTCAGACCTGGGGT 59.362 50.000 0.00 0.00 39.44 4.95
2502 3837 6.911250 ACCTGGGGTCTAAAATTTTAGTTG 57.089 37.500 28.59 16.57 40.69 3.16
2503 3838 5.245301 ACCTGGGGTCTAAAATTTTAGTTGC 59.755 40.000 28.59 21.14 40.69 4.17
2504 3839 5.480422 CCTGGGGTCTAAAATTTTAGTTGCT 59.520 40.000 28.59 0.24 40.69 3.91
2505 3840 6.350194 CCTGGGGTCTAAAATTTTAGTTGCTC 60.350 42.308 28.59 21.17 40.69 4.26
2506 3841 6.311735 TGGGGTCTAAAATTTTAGTTGCTCT 58.688 36.000 28.59 0.00 40.69 4.09
2507 3842 6.780522 TGGGGTCTAAAATTTTAGTTGCTCTT 59.219 34.615 28.59 0.00 40.69 2.85
2508 3843 7.289084 TGGGGTCTAAAATTTTAGTTGCTCTTT 59.711 33.333 28.59 0.00 40.69 2.52
2509 3844 7.813148 GGGGTCTAAAATTTTAGTTGCTCTTTC 59.187 37.037 28.59 13.82 40.69 2.62
2510 3845 7.537649 GGGTCTAAAATTTTAGTTGCTCTTTCG 59.462 37.037 28.59 8.03 40.69 3.46
2511 3846 8.074370 GGTCTAAAATTTTAGTTGCTCTTTCGT 58.926 33.333 28.59 0.00 40.69 3.85
2512 3847 9.104126 GTCTAAAATTTTAGTTGCTCTTTCGTC 57.896 33.333 28.59 3.44 40.69 4.20
2513 3848 9.052759 TCTAAAATTTTAGTTGCTCTTTCGTCT 57.947 29.630 28.59 0.00 40.69 4.18
2516 3851 9.612620 AAAATTTTAGTTGCTCTTTCGTCTATG 57.387 29.630 0.37 0.00 0.00 2.23
2517 3852 8.547967 AATTTTAGTTGCTCTTTCGTCTATGA 57.452 30.769 0.00 0.00 0.00 2.15
2518 3853 7.956420 TTTTAGTTGCTCTTTCGTCTATGAA 57.044 32.000 0.00 0.00 0.00 2.57
2519 3854 7.582435 TTTAGTTGCTCTTTCGTCTATGAAG 57.418 36.000 0.00 0.00 0.00 3.02
2520 3855 3.929610 AGTTGCTCTTTCGTCTATGAAGC 59.070 43.478 0.00 0.00 0.00 3.86
2521 3856 3.592898 TGCTCTTTCGTCTATGAAGCA 57.407 42.857 0.00 0.00 0.00 3.91
2522 3857 3.254060 TGCTCTTTCGTCTATGAAGCAC 58.746 45.455 0.00 0.00 0.00 4.40
2523 3858 2.605366 GCTCTTTCGTCTATGAAGCACC 59.395 50.000 0.00 0.00 0.00 5.01
2524 3859 3.849911 CTCTTTCGTCTATGAAGCACCA 58.150 45.455 0.00 0.00 0.00 4.17
2525 3860 4.437239 CTCTTTCGTCTATGAAGCACCAT 58.563 43.478 0.00 0.00 0.00 3.55
2526 3861 5.592054 CTCTTTCGTCTATGAAGCACCATA 58.408 41.667 0.00 0.00 0.00 2.74
2527 3862 5.972935 TCTTTCGTCTATGAAGCACCATAA 58.027 37.500 0.00 0.00 0.00 1.90
2528 3863 6.042777 TCTTTCGTCTATGAAGCACCATAAG 58.957 40.000 0.00 0.00 0.00 1.73
2529 3864 5.592104 TTCGTCTATGAAGCACCATAAGA 57.408 39.130 0.00 0.00 0.00 2.10
2530 3865 5.791336 TCGTCTATGAAGCACCATAAGAT 57.209 39.130 0.00 0.00 0.00 2.40
2531 3866 6.161855 TCGTCTATGAAGCACCATAAGATT 57.838 37.500 0.00 0.00 0.00 2.40
2532 3867 6.582636 TCGTCTATGAAGCACCATAAGATTT 58.417 36.000 0.00 0.00 0.00 2.17
2533 3868 6.479990 TCGTCTATGAAGCACCATAAGATTTG 59.520 38.462 0.00 0.00 0.00 2.32
2534 3869 6.479990 CGTCTATGAAGCACCATAAGATTTGA 59.520 38.462 0.00 0.00 0.00 2.69
2535 3870 7.307042 CGTCTATGAAGCACCATAAGATTTGAG 60.307 40.741 0.00 0.00 0.00 3.02
2536 3871 6.994496 TCTATGAAGCACCATAAGATTTGAGG 59.006 38.462 0.00 0.00 0.00 3.86
2537 3872 4.922206 TGAAGCACCATAAGATTTGAGGT 58.078 39.130 0.00 0.00 0.00 3.85
2538 3873 4.943705 TGAAGCACCATAAGATTTGAGGTC 59.056 41.667 0.00 0.00 0.00 3.85
2539 3874 4.851639 AGCACCATAAGATTTGAGGTCT 57.148 40.909 0.00 0.00 0.00 3.85
2540 3875 5.184892 AGCACCATAAGATTTGAGGTCTT 57.815 39.130 0.00 0.00 39.19 3.01
2541 3876 5.189180 AGCACCATAAGATTTGAGGTCTTC 58.811 41.667 0.00 0.00 37.18 2.87
2542 3877 4.943705 GCACCATAAGATTTGAGGTCTTCA 59.056 41.667 0.00 0.00 37.18 3.02
2543 3878 5.591877 GCACCATAAGATTTGAGGTCTTCAT 59.408 40.000 0.00 0.00 37.18 2.57
2544 3879 6.096001 GCACCATAAGATTTGAGGTCTTCATT 59.904 38.462 0.00 0.00 37.18 2.57
2545 3880 7.363268 GCACCATAAGATTTGAGGTCTTCATTT 60.363 37.037 0.00 0.00 37.18 2.32
2546 3881 8.186821 CACCATAAGATTTGAGGTCTTCATTTC 58.813 37.037 0.00 0.00 37.18 2.17
2547 3882 7.890127 ACCATAAGATTTGAGGTCTTCATTTCA 59.110 33.333 0.00 0.00 37.18 2.69
2548 3883 8.742777 CCATAAGATTTGAGGTCTTCATTTCAA 58.257 33.333 0.00 0.00 37.18 2.69
2549 3884 9.565213 CATAAGATTTGAGGTCTTCATTTCAAC 57.435 33.333 0.00 0.00 37.18 3.18
2550 3885 6.581171 AGATTTGAGGTCTTCATTTCAACC 57.419 37.500 0.00 0.00 35.27 3.77
2551 3886 5.478332 AGATTTGAGGTCTTCATTTCAACCC 59.522 40.000 0.00 0.00 35.27 4.11
2552 3887 3.154827 TGAGGTCTTCATTTCAACCCC 57.845 47.619 0.00 0.00 31.91 4.95
2553 3888 2.445145 TGAGGTCTTCATTTCAACCCCA 59.555 45.455 0.00 0.00 31.91 4.96
2554 3889 3.117322 TGAGGTCTTCATTTCAACCCCAA 60.117 43.478 0.00 0.00 31.91 4.12
2555 3890 3.895041 GAGGTCTTCATTTCAACCCCAAA 59.105 43.478 0.00 0.00 31.91 3.28
2556 3891 4.492646 AGGTCTTCATTTCAACCCCAAAT 58.507 39.130 0.00 0.00 31.91 2.32
2557 3892 4.907269 AGGTCTTCATTTCAACCCCAAATT 59.093 37.500 0.00 0.00 31.91 1.82
2558 3893 6.081356 AGGTCTTCATTTCAACCCCAAATTA 58.919 36.000 0.00 0.00 31.91 1.40
2559 3894 6.556874 AGGTCTTCATTTCAACCCCAAATTAA 59.443 34.615 0.00 0.00 31.91 1.40
2560 3895 6.649141 GGTCTTCATTTCAACCCCAAATTAAC 59.351 38.462 0.00 0.00 0.00 2.01
2561 3896 7.441836 GTCTTCATTTCAACCCCAAATTAACT 58.558 34.615 0.00 0.00 0.00 2.24
2562 3897 8.581578 GTCTTCATTTCAACCCCAAATTAACTA 58.418 33.333 0.00 0.00 0.00 2.24
2563 3898 8.581578 TCTTCATTTCAACCCCAAATTAACTAC 58.418 33.333 0.00 0.00 0.00 2.73
2564 3899 7.841282 TCATTTCAACCCCAAATTAACTACA 57.159 32.000 0.00 0.00 0.00 2.74
2565 3900 7.891561 TCATTTCAACCCCAAATTAACTACAG 58.108 34.615 0.00 0.00 0.00 2.74
2566 3901 6.658188 TTTCAACCCCAAATTAACTACAGG 57.342 37.500 0.00 0.00 0.00 4.00
2567 3902 5.327737 TCAACCCCAAATTAACTACAGGT 57.672 39.130 0.00 0.00 0.00 4.00
2568 3903 5.318630 TCAACCCCAAATTAACTACAGGTC 58.681 41.667 0.00 0.00 0.00 3.85
2569 3904 4.311520 ACCCCAAATTAACTACAGGTCC 57.688 45.455 0.00 0.00 0.00 4.46
2570 3905 3.658705 ACCCCAAATTAACTACAGGTCCA 59.341 43.478 0.00 0.00 0.00 4.02
2571 3906 4.263771 ACCCCAAATTAACTACAGGTCCAG 60.264 45.833 0.00 0.00 0.00 3.86
2572 3907 4.263771 CCCCAAATTAACTACAGGTCCAGT 60.264 45.833 0.00 0.00 0.00 4.00
2573 3908 4.941873 CCCAAATTAACTACAGGTCCAGTC 59.058 45.833 0.00 0.00 0.00 3.51
2574 3909 4.941873 CCAAATTAACTACAGGTCCAGTCC 59.058 45.833 0.00 0.00 0.00 3.85
2575 3910 5.514136 CCAAATTAACTACAGGTCCAGTCCA 60.514 44.000 0.00 0.00 0.00 4.02
2576 3911 6.180472 CAAATTAACTACAGGTCCAGTCCAT 58.820 40.000 0.00 0.00 0.00 3.41
2577 3912 4.819105 TTAACTACAGGTCCAGTCCATG 57.181 45.455 0.00 0.00 0.00 3.66
2587 3922 2.867109 CCAGTCCATGGTGAAGTTCT 57.133 50.000 12.58 0.00 44.91 3.01
2588 3923 2.704572 CCAGTCCATGGTGAAGTTCTC 58.295 52.381 12.58 0.00 44.91 2.87
2589 3924 2.038952 CCAGTCCATGGTGAAGTTCTCA 59.961 50.000 12.58 3.39 44.91 3.27
2590 3925 3.332919 CAGTCCATGGTGAAGTTCTCAG 58.667 50.000 12.58 0.00 33.60 3.35
2591 3926 3.007290 CAGTCCATGGTGAAGTTCTCAGA 59.993 47.826 12.58 0.00 33.60 3.27
2592 3927 3.007398 AGTCCATGGTGAAGTTCTCAGAC 59.993 47.826 12.58 7.48 33.60 3.51
2593 3928 2.303022 TCCATGGTGAAGTTCTCAGACC 59.697 50.000 12.58 3.88 33.60 3.85
2594 3929 2.304180 CCATGGTGAAGTTCTCAGACCT 59.696 50.000 2.57 0.00 33.60 3.85
2595 3930 3.332919 CATGGTGAAGTTCTCAGACCTG 58.667 50.000 10.51 4.36 33.60 4.00
2596 3931 1.694150 TGGTGAAGTTCTCAGACCTGG 59.306 52.381 10.51 0.00 33.60 4.45
2597 3932 1.002544 GGTGAAGTTCTCAGACCTGGG 59.997 57.143 4.17 0.00 33.60 4.45
2598 3933 1.002544 GTGAAGTTCTCAGACCTGGGG 59.997 57.143 4.17 0.00 33.60 4.96
2599 3934 0.615850 GAAGTTCTCAGACCTGGGGG 59.384 60.000 0.00 0.00 38.88 5.40
2615 3950 2.235845 GGGGGAAGTGCTCGTATTAC 57.764 55.000 0.00 0.00 0.00 1.89
2617 3952 2.169978 GGGGGAAGTGCTCGTATTACTT 59.830 50.000 0.00 0.00 37.36 2.24
2618 3953 3.370209 GGGGGAAGTGCTCGTATTACTTT 60.370 47.826 0.00 0.00 34.99 2.66
2622 3957 5.063564 GGGAAGTGCTCGTATTACTTTTGAG 59.936 44.000 0.00 0.00 34.99 3.02
2631 3966 7.571428 GCTCGTATTACTTTTGAGTTGCTCTTT 60.571 37.037 0.00 0.00 0.00 2.52
2633 3968 6.732392 CGTATTACTTTTGAGTTGCTCTTTCG 59.268 38.462 0.00 0.00 0.00 3.46
2634 3969 6.619801 ATTACTTTTGAGTTGCTCTTTCGT 57.380 33.333 0.00 0.00 0.00 3.85
2635 3970 4.537936 ACTTTTGAGTTGCTCTTTCGTC 57.462 40.909 0.00 0.00 0.00 4.20
2638 3975 1.487482 TGAGTTGCTCTTTCGTCGTG 58.513 50.000 0.00 0.00 0.00 4.35
2651 3988 1.669440 GTCGTGCCAACCCTACTCA 59.331 57.895 0.00 0.00 0.00 3.41
2654 3991 0.034896 CGTGCCAACCCTACTCACTT 59.965 55.000 0.00 0.00 0.00 3.16
2655 3992 1.809684 GTGCCAACCCTACTCACTTC 58.190 55.000 0.00 0.00 0.00 3.01
2657 3994 1.347707 TGCCAACCCTACTCACTTCAG 59.652 52.381 0.00 0.00 0.00 3.02
2659 3996 2.565834 GCCAACCCTACTCACTTCAGTA 59.434 50.000 0.00 0.00 0.00 2.74
2675 4028 3.334691 TCAGTAGCACCATTACAAGCAC 58.665 45.455 0.00 0.00 0.00 4.40
2677 4030 3.691118 CAGTAGCACCATTACAAGCACAT 59.309 43.478 0.00 0.00 0.00 3.21
2721 4176 4.988486 GTTGCACCGCAGCTGCAC 62.988 66.667 36.03 22.34 44.32 4.57
2746 4201 3.003763 GGGCCTCACCGGACTCTT 61.004 66.667 9.46 0.00 42.26 2.85
2747 4202 2.266055 GGCCTCACCGGACTCTTG 59.734 66.667 9.46 0.00 38.04 3.02
2748 4203 2.283529 GGCCTCACCGGACTCTTGA 61.284 63.158 9.46 0.00 38.04 3.02
2749 4204 1.671742 GCCTCACCGGACTCTTGAA 59.328 57.895 9.46 0.00 33.16 2.69
2750 4205 0.670854 GCCTCACCGGACTCTTGAAC 60.671 60.000 9.46 0.00 33.16 3.18
2751 4206 0.037232 CCTCACCGGACTCTTGAACC 60.037 60.000 9.46 0.00 33.16 3.62
2752 4207 0.388649 CTCACCGGACTCTTGAACCG 60.389 60.000 9.46 0.00 45.24 4.44
2754 4209 2.207924 ACCGGACTCTTGAACCGCT 61.208 57.895 9.46 0.00 44.45 5.52
2755 4210 1.446272 CCGGACTCTTGAACCGCTC 60.446 63.158 0.00 0.00 44.45 5.03
2756 4211 1.587054 CGGACTCTTGAACCGCTCT 59.413 57.895 0.00 0.00 40.19 4.09
2758 4213 0.603569 GGACTCTTGAACCGCTCTCA 59.396 55.000 0.00 0.00 0.00 3.27
2759 4214 1.403514 GGACTCTTGAACCGCTCTCAG 60.404 57.143 0.00 0.00 0.00 3.35
2761 4216 0.739112 CTCTTGAACCGCTCTCAGGC 60.739 60.000 0.00 0.00 0.00 4.85
2763 4218 2.177594 CTTGAACCGCTCTCAGGCCT 62.178 60.000 0.00 0.00 0.00 5.19
2769 4227 2.780094 CGCTCTCAGGCCTGACGAT 61.780 63.158 32.00 0.00 35.46 3.73
2775 4233 4.101448 AGGCCTGACGATGGTGGC 62.101 66.667 3.11 1.07 44.22 5.01
2779 4237 4.457496 CTGACGATGGTGGCGCCT 62.457 66.667 29.70 6.86 38.35 5.52
2791 4249 4.135153 GCGCCTCTCTTCTCCGCA 62.135 66.667 0.00 0.00 43.67 5.69
2793 4251 1.518133 CGCCTCTCTTCTCCGCAAG 60.518 63.158 0.00 0.00 0.00 4.01
2794 4252 1.594310 GCCTCTCTTCTCCGCAAGT 59.406 57.895 0.00 0.00 0.00 3.16
2795 4253 0.459411 GCCTCTCTTCTCCGCAAGTC 60.459 60.000 0.00 0.00 0.00 3.01
2796 4254 0.891373 CCTCTCTTCTCCGCAAGTCA 59.109 55.000 0.00 0.00 0.00 3.41
2797 4255 1.135141 CCTCTCTTCTCCGCAAGTCAG 60.135 57.143 0.00 0.00 0.00 3.51
2798 4256 0.891373 TCTCTTCTCCGCAAGTCAGG 59.109 55.000 0.00 0.00 0.00 3.86
2799 4257 0.108424 CTCTTCTCCGCAAGTCAGGG 60.108 60.000 0.00 0.00 0.00 4.45
2800 4258 0.832135 TCTTCTCCGCAAGTCAGGGT 60.832 55.000 0.00 0.00 0.00 4.34
2801 4259 0.895530 CTTCTCCGCAAGTCAGGGTA 59.104 55.000 0.00 0.00 0.00 3.69
2802 4260 0.606604 TTCTCCGCAAGTCAGGGTAC 59.393 55.000 0.00 0.00 0.00 3.34
2803 4261 0.541063 TCTCCGCAAGTCAGGGTACA 60.541 55.000 0.00 0.00 0.00 2.90
2804 4262 0.537188 CTCCGCAAGTCAGGGTACAT 59.463 55.000 0.00 0.00 0.00 2.29
2805 4263 0.535335 TCCGCAAGTCAGGGTACATC 59.465 55.000 0.00 0.00 0.00 3.06
2806 4264 0.537188 CCGCAAGTCAGGGTACATCT 59.463 55.000 0.00 0.00 0.00 2.90
2807 4265 1.066143 CCGCAAGTCAGGGTACATCTT 60.066 52.381 0.00 0.00 0.00 2.40
2808 4266 2.002586 CGCAAGTCAGGGTACATCTTG 58.997 52.381 0.00 3.25 38.60 3.02
2810 4268 3.340814 CAAGTCAGGGTACATCTTGCT 57.659 47.619 0.00 0.00 31.19 3.91
2811 4269 3.005554 CAAGTCAGGGTACATCTTGCTG 58.994 50.000 0.00 0.00 31.19 4.41
2812 4270 1.065854 AGTCAGGGTACATCTTGCTGC 60.066 52.381 0.00 0.00 0.00 5.25
2822 4280 0.108138 ATCTTGCTGCGTCAGGGTAC 60.108 55.000 8.57 0.00 31.21 3.34
2838 4296 2.295909 GGGTACATCTTGCTGCAACAAA 59.704 45.455 11.69 0.30 0.00 2.83
2877 4335 6.441088 AGAAACTCTTCTCCACCATACTTT 57.559 37.500 0.00 0.00 37.31 2.66
2878 4336 6.842676 AGAAACTCTTCTCCACCATACTTTT 58.157 36.000 0.00 0.00 37.31 2.27
2879 4337 7.290813 AGAAACTCTTCTCCACCATACTTTTT 58.709 34.615 0.00 0.00 37.31 1.94
2915 4373 3.199946 TCCACCATACTTAGGCCTGAAAG 59.800 47.826 17.99 14.98 0.00 2.62
2984 4442 1.612199 GCACGAGGAACCCCAATGTAA 60.612 52.381 0.00 0.00 33.88 2.41
2992 4450 3.118920 GGAACCCCAATGTAAATTTCCGG 60.119 47.826 0.00 0.00 0.00 5.14
2994 4452 1.827969 CCCCAATGTAAATTTCCGGCA 59.172 47.619 0.00 0.00 0.00 5.69
3015 4473 6.237808 CGGCAATTAAATAAAGCTTTGCGATT 60.238 34.615 22.02 10.63 40.14 3.34
3017 4475 7.962373 GGCAATTAAATAAAGCTTTGCGATTTT 59.038 29.630 22.02 14.10 40.14 1.82
3018 4476 8.778640 GCAATTAAATAAAGCTTTGCGATTTTG 58.221 29.630 22.02 17.19 32.67 2.44
3040 4500 7.994425 TTGAAAGTATCCTTGCAAGTATTCA 57.006 32.000 24.35 18.98 40.61 2.57
3055 4515 6.928492 GCAAGTATTCAAGTTCCCAAATGAAA 59.072 34.615 0.00 0.00 35.62 2.69
3074 4534 7.698836 ATGAAACTTCCATTTTCAAAGAACG 57.301 32.000 1.90 0.00 44.14 3.95
3106 4566 9.810545 TGCTTAATAAATTGCCAATAACCTTAC 57.189 29.630 0.00 0.00 0.00 2.34
3107 4567 9.810545 GCTTAATAAATTGCCAATAACCTTACA 57.189 29.630 0.00 0.00 0.00 2.41
3111 4571 6.664428 AAATTGCCAATAACCTTACAGTGT 57.336 33.333 0.00 0.00 0.00 3.55
3112 4572 5.897377 ATTGCCAATAACCTTACAGTGTC 57.103 39.130 0.00 0.00 0.00 3.67
3113 4573 4.359434 TGCCAATAACCTTACAGTGTCA 57.641 40.909 0.00 0.00 0.00 3.58
3114 4574 4.917385 TGCCAATAACCTTACAGTGTCAT 58.083 39.130 0.00 0.00 0.00 3.06
3115 4575 5.321102 TGCCAATAACCTTACAGTGTCATT 58.679 37.500 0.00 0.00 0.00 2.57
3116 4576 5.182950 TGCCAATAACCTTACAGTGTCATTG 59.817 40.000 0.00 1.92 0.00 2.82
3117 4577 5.393027 GCCAATAACCTTACAGTGTCATTGG 60.393 44.000 0.00 11.19 42.54 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.097257 TCAAAAGAAATTCAAAACATCAAGGAC 57.903 29.630 0.00 0.00 0.00 3.85
26 27 6.169800 TCCACGATAACATGACATCAAAAGA 58.830 36.000 0.00 0.00 0.00 2.52
38 39 2.027192 ACACCTGCTTCCACGATAACAT 60.027 45.455 0.00 0.00 0.00 2.71
133 155 7.038658 AGTGAGTAAATTAGGCATCTATCCCTC 60.039 40.741 0.00 0.00 32.65 4.30
176 198 6.428465 CGTTGGTAAAATGGGGCTTTATTTTT 59.572 34.615 10.42 0.00 37.57 1.94
181 203 2.826725 CCGTTGGTAAAATGGGGCTTTA 59.173 45.455 0.00 0.00 0.00 1.85
209 1478 1.475930 GCTAACTTCTCAGGATGGCCC 60.476 57.143 0.00 0.00 36.16 5.80
246 1515 2.093869 TGGGCTATCCAGTCGTAACAAC 60.094 50.000 0.00 0.00 41.46 3.32
282 1551 2.019249 CATGCTACCAGTCAATGTGGG 58.981 52.381 0.00 0.00 39.65 4.61
307 1576 6.238130 GCTTACGGATTGAAGATTCCAGTAAC 60.238 42.308 0.00 0.00 32.66 2.50
428 1697 2.165301 GTTTCGGGAGATGGCGTCG 61.165 63.158 0.13 0.00 39.57 5.12
429 1698 1.814169 GGTTTCGGGAGATGGCGTC 60.814 63.158 0.00 0.00 39.57 5.19
1005 2274 0.519586 GAGACGTGAAGCGACGAGAG 60.520 60.000 12.06 0.00 44.77 3.20
1030 2299 0.459237 AGCGATTCAGTTGAGGCGAG 60.459 55.000 9.03 0.00 0.00 5.03
1039 2308 1.337821 GAAACGACGAGCGATTCAGT 58.662 50.000 15.80 0.00 46.91 3.41
1052 2321 2.545113 CCACAAGAGGAACGAGAAACGA 60.545 50.000 0.00 0.00 45.77 3.85
1266 2540 6.016777 ACAGCAAATCTGAACCAGAAAGTAAG 60.017 38.462 0.43 0.00 44.04 2.34
1312 2593 8.957466 AGAAACTAACTAAACCAGATAATTGCC 58.043 33.333 0.00 0.00 0.00 4.52
1318 2599 7.820872 CGGGAAAGAAACTAACTAAACCAGATA 59.179 37.037 0.00 0.00 0.00 1.98
1343 2633 6.591448 TCCTAGCATGATTACAGATATTTGCG 59.409 38.462 0.00 0.00 34.20 4.85
1367 2657 6.801539 TTTGTCCATAACAGACTCACATTC 57.198 37.500 0.00 0.00 39.58 2.67
1375 2665 8.324163 AGTACTTCAATTTGTCCATAACAGAC 57.676 34.615 0.00 0.00 39.58 3.51
1400 2690 6.155221 ACAATGCTACCTCAGATTTCAGAGTA 59.845 38.462 0.19 0.00 0.00 2.59
1403 2693 5.426689 ACAATGCTACCTCAGATTTCAGA 57.573 39.130 0.00 0.00 0.00 3.27
1437 2727 7.523293 TTTGAACAACCTATCAATCACATGT 57.477 32.000 0.00 0.00 35.63 3.21
1485 2775 2.236489 ATGACCCATTTTGACCCCAG 57.764 50.000 0.00 0.00 0.00 4.45
1540 2848 6.464607 GGAGAAAACTAGAACAAAGGGACTCT 60.465 42.308 0.00 0.00 38.49 3.24
1544 2852 5.132144 ACAGGAGAAAACTAGAACAAAGGGA 59.868 40.000 0.00 0.00 0.00 4.20
1597 2905 0.664761 GCACTGCAGTTCAAGCTCAA 59.335 50.000 18.94 0.00 0.00 3.02
1604 2912 0.178995 TGATTGGGCACTGCAGTTCA 60.179 50.000 18.94 14.63 0.00 3.18
1633 2945 8.385898 AGACAATATCCTAGAGTAGAACTTCG 57.614 38.462 0.00 0.00 0.00 3.79
1636 2948 9.702253 TCAAAGACAATATCCTAGAGTAGAACT 57.298 33.333 0.00 0.00 0.00 3.01
1652 2964 8.084073 CACTCAACATACCAATTCAAAGACAAT 58.916 33.333 0.00 0.00 0.00 2.71
1654 2966 6.770303 TCACTCAACATACCAATTCAAAGACA 59.230 34.615 0.00 0.00 0.00 3.41
1674 2986 4.545823 TTTTTCACCAACGACATCACTC 57.454 40.909 0.00 0.00 0.00 3.51
1711 3026 6.942532 ACAAGATGTGAAGTTTTGCTCTAA 57.057 33.333 0.00 0.00 0.00 2.10
1721 3036 6.874134 GGTAACAGACATACAAGATGTGAAGT 59.126 38.462 0.00 0.00 31.52 3.01
1725 3040 5.351465 GTGGGTAACAGACATACAAGATGTG 59.649 44.000 0.00 0.00 39.74 3.21
1760 3079 7.239773 ACACAATAGGTTATATAAGGGCCAGAT 59.760 37.037 6.18 0.00 0.00 2.90
1762 3081 6.655003 CACACAATAGGTTATATAAGGGCCAG 59.345 42.308 6.18 0.00 0.00 4.85
1771 3090 9.393786 AGATTCCTACCACACAATAGGTTATAT 57.606 33.333 0.00 0.00 39.30 0.86
1775 3094 7.504926 TTAGATTCCTACCACACAATAGGTT 57.495 36.000 0.00 0.00 39.30 3.50
1776 3095 7.509546 CATTAGATTCCTACCACACAATAGGT 58.490 38.462 0.00 0.00 39.30 3.08
1778 3097 6.992123 TGCATTAGATTCCTACCACACAATAG 59.008 38.462 0.00 0.00 0.00 1.73
1781 3103 5.172687 TGCATTAGATTCCTACCACACAA 57.827 39.130 0.00 0.00 0.00 3.33
1838 3169 3.057736 TCAGTAGGCGTAGACAAACAGAC 60.058 47.826 0.00 0.00 39.87 3.51
1986 3317 4.142881 CGATACACGAGACATATCGACCAT 60.143 45.833 2.45 0.00 46.78 3.55
2031 3362 6.313905 GGTCATACAGAACACTGGATTAACAG 59.686 42.308 0.00 0.00 44.03 3.16
2032 3363 6.170506 GGTCATACAGAACACTGGATTAACA 58.829 40.000 0.00 0.00 33.41 2.41
2033 3364 6.170506 TGGTCATACAGAACACTGGATTAAC 58.829 40.000 0.00 0.00 39.57 2.01
2141 3472 8.714179 ACATTGCATTCAAAGACACATTTTATG 58.286 29.630 0.00 0.00 35.56 1.90
2185 3516 8.984891 TGATGAATAAACAACCACATCAAATC 57.015 30.769 0.00 0.00 40.25 2.17
2191 3522 7.613022 AGATGACTGATGAATAAACAACCACAT 59.387 33.333 0.00 0.00 0.00 3.21
2195 3526 9.774742 GTAAAGATGACTGATGAATAAACAACC 57.225 33.333 0.00 0.00 0.00 3.77
2203 3534 7.628234 AGTCCAAGTAAAGATGACTGATGAAT 58.372 34.615 0.00 0.00 35.12 2.57
2213 3544 5.939883 TCACATTCCAGTCCAAGTAAAGATG 59.060 40.000 0.00 0.00 0.00 2.90
2227 3558 3.284617 TGCCAGATCATTCACATTCCAG 58.715 45.455 0.00 0.00 0.00 3.86
2234 3565 3.198068 ACGTACATGCCAGATCATTCAC 58.802 45.455 0.00 0.00 0.00 3.18
2235 3566 3.541996 ACGTACATGCCAGATCATTCA 57.458 42.857 0.00 0.00 0.00 2.57
2245 3576 4.392445 TGTACAACCAAATACGTACATGCC 59.608 41.667 0.00 0.00 39.31 4.40
2253 3584 5.849357 TTGCTAGTGTACAACCAAATACG 57.151 39.130 0.00 0.00 0.00 3.06
2254 3585 7.141100 ACATTGCTAGTGTACAACCAAATAC 57.859 36.000 0.00 0.00 0.00 1.89
2255 3586 7.753309 AACATTGCTAGTGTACAACCAAATA 57.247 32.000 0.00 0.00 0.00 1.40
2256 3587 6.648879 AACATTGCTAGTGTACAACCAAAT 57.351 33.333 0.00 0.00 0.00 2.32
2257 3588 6.320164 AGAAACATTGCTAGTGTACAACCAAA 59.680 34.615 0.00 0.00 0.00 3.28
2263 3594 5.606505 TCACAGAAACATTGCTAGTGTACA 58.393 37.500 0.00 0.00 0.00 2.90
2269 3600 3.373439 GGAGCTCACAGAAACATTGCTAG 59.627 47.826 17.19 0.00 0.00 3.42
2274 3605 1.425066 TGGGGAGCTCACAGAAACATT 59.575 47.619 19.73 0.00 0.00 2.71
2280 3611 1.985614 CACATGGGGAGCTCACAGA 59.014 57.895 19.73 3.47 0.00 3.41
2293 3624 1.195448 GAACCTCAACGTCAGCACATG 59.805 52.381 0.00 0.00 0.00 3.21
2294 3625 1.202639 TGAACCTCAACGTCAGCACAT 60.203 47.619 0.00 0.00 0.00 3.21
2296 3627 1.295792 TTGAACCTCAACGTCAGCAC 58.704 50.000 0.00 0.00 30.26 4.40
2304 3635 7.379529 CACTGTTATCATGTTTTGAACCTCAAC 59.620 37.037 0.00 0.00 35.89 3.18
2305 3636 7.284261 TCACTGTTATCATGTTTTGAACCTCAA 59.716 33.333 0.00 0.00 38.03 3.02
2333 3668 4.090761 TCCCCTGTATTTGATCATCTGC 57.909 45.455 0.00 0.00 0.00 4.26
2347 3682 1.133199 TCAACCAATTGCTTCCCCTGT 60.133 47.619 0.00 0.00 35.63 4.00
2350 3685 4.503910 GTTAATCAACCAATTGCTTCCCC 58.496 43.478 0.00 0.00 35.63 4.81
2353 3688 6.419413 TCAAACGTTAATCAACCAATTGCTTC 59.581 34.615 0.00 0.00 35.63 3.86
2382 3717 8.493787 TCATAGAGGTGTGATCTACTACTAGA 57.506 38.462 0.00 0.00 32.27 2.43
2383 3718 9.214957 CTTCATAGAGGTGTGATCTACTACTAG 57.785 40.741 0.00 0.00 32.27 2.57
2402 3737 6.769822 ACCTCAAATCTTATGGTGCTTCATAG 59.230 38.462 0.00 0.00 32.05 2.23
2414 3749 8.743714 GGTTGAAATGAAGACCTCAAATCTTAT 58.256 33.333 0.00 0.00 37.67 1.73
2423 3758 8.360390 ACTTAATTTGGTTGAAATGAAGACCTC 58.640 33.333 10.10 0.00 42.20 3.85
2426 3761 7.437862 TGCACTTAATTTGGTTGAAATGAAGAC 59.562 33.333 10.10 4.27 42.20 3.01
2428 3763 7.095523 CCTGCACTTAATTTGGTTGAAATGAAG 60.096 37.037 0.00 0.00 44.05 3.02
2429 3764 6.705381 CCTGCACTTAATTTGGTTGAAATGAA 59.295 34.615 0.00 0.00 34.30 2.57
2430 3765 6.183360 ACCTGCACTTAATTTGGTTGAAATGA 60.183 34.615 0.00 0.00 34.30 2.57
2445 3780 3.326588 ACCATGTACTTGACCTGCACTTA 59.673 43.478 10.20 0.00 0.00 2.24
2446 3781 2.106511 ACCATGTACTTGACCTGCACTT 59.893 45.455 10.20 0.00 0.00 3.16
2447 3782 1.699634 ACCATGTACTTGACCTGCACT 59.300 47.619 10.20 0.00 0.00 4.40
2448 3783 2.185004 ACCATGTACTTGACCTGCAC 57.815 50.000 10.20 0.00 0.00 4.57
2449 3784 2.949177 AACCATGTACTTGACCTGCA 57.051 45.000 10.20 0.00 0.00 4.41
2450 3785 4.324267 ACTAAACCATGTACTTGACCTGC 58.676 43.478 10.20 0.00 0.00 4.85
2451 3786 6.231211 AGAACTAAACCATGTACTTGACCTG 58.769 40.000 10.20 0.00 0.00 4.00
2452 3787 6.042781 TGAGAACTAAACCATGTACTTGACCT 59.957 38.462 10.20 0.00 0.00 3.85
2453 3788 6.228258 TGAGAACTAAACCATGTACTTGACC 58.772 40.000 10.20 0.00 0.00 4.02
2454 3789 7.116519 GTCTGAGAACTAAACCATGTACTTGAC 59.883 40.741 10.20 0.00 0.00 3.18
2455 3790 7.152645 GTCTGAGAACTAAACCATGTACTTGA 58.847 38.462 10.20 0.00 0.00 3.02
2456 3791 6.369065 GGTCTGAGAACTAAACCATGTACTTG 59.631 42.308 1.78 1.78 0.00 3.16
2457 3792 6.270231 AGGTCTGAGAACTAAACCATGTACTT 59.730 38.462 0.00 0.00 32.25 2.24
2458 3793 5.780793 AGGTCTGAGAACTAAACCATGTACT 59.219 40.000 0.00 0.00 32.25 2.73
2459 3794 5.869888 CAGGTCTGAGAACTAAACCATGTAC 59.130 44.000 0.00 0.00 32.25 2.90
2460 3795 5.046591 CCAGGTCTGAGAACTAAACCATGTA 60.047 44.000 0.00 0.00 32.25 2.29
2461 3796 4.263068 CCAGGTCTGAGAACTAAACCATGT 60.263 45.833 0.00 0.00 32.25 3.21
2462 3797 4.256920 CCAGGTCTGAGAACTAAACCATG 58.743 47.826 0.00 0.00 32.25 3.66
2463 3798 3.264450 CCCAGGTCTGAGAACTAAACCAT 59.736 47.826 0.00 0.00 32.25 3.55
2464 3799 2.637872 CCCAGGTCTGAGAACTAAACCA 59.362 50.000 0.00 0.00 32.25 3.67
2465 3800 2.027100 CCCCAGGTCTGAGAACTAAACC 60.027 54.545 0.00 0.00 0.00 3.27
2466 3801 2.638363 ACCCCAGGTCTGAGAACTAAAC 59.362 50.000 0.00 0.00 0.00 2.01
2467 3802 2.986050 ACCCCAGGTCTGAGAACTAAA 58.014 47.619 0.00 0.00 0.00 1.85
2468 3803 2.715763 ACCCCAGGTCTGAGAACTAA 57.284 50.000 0.00 0.00 0.00 2.24
2479 3814 5.245301 GCAACTAAAATTTTAGACCCCAGGT 59.755 40.000 34.09 14.67 42.05 4.00
2480 3815 5.480422 AGCAACTAAAATTTTAGACCCCAGG 59.520 40.000 34.09 19.05 42.05 4.45
2481 3816 6.434340 AGAGCAACTAAAATTTTAGACCCCAG 59.566 38.462 34.09 20.26 42.05 4.45
2482 3817 6.311735 AGAGCAACTAAAATTTTAGACCCCA 58.688 36.000 34.09 6.11 42.05 4.96
2483 3818 6.835819 AGAGCAACTAAAATTTTAGACCCC 57.164 37.500 34.09 21.46 42.05 4.95
2484 3819 7.537649 CGAAAGAGCAACTAAAATTTTAGACCC 59.462 37.037 34.09 22.76 42.05 4.46
2485 3820 8.074370 ACGAAAGAGCAACTAAAATTTTAGACC 58.926 33.333 34.09 23.02 42.05 3.85
2486 3821 9.104126 GACGAAAGAGCAACTAAAATTTTAGAC 57.896 33.333 34.09 24.21 42.05 2.59
2487 3822 9.052759 AGACGAAAGAGCAACTAAAATTTTAGA 57.947 29.630 34.09 8.80 42.05 2.10
2490 3825 9.612620 CATAGACGAAAGAGCAACTAAAATTTT 57.387 29.630 8.75 8.75 0.00 1.82
2491 3826 8.999431 TCATAGACGAAAGAGCAACTAAAATTT 58.001 29.630 0.00 0.00 0.00 1.82
2492 3827 8.547967 TCATAGACGAAAGAGCAACTAAAATT 57.452 30.769 0.00 0.00 0.00 1.82
2493 3828 8.547967 TTCATAGACGAAAGAGCAACTAAAAT 57.452 30.769 0.00 0.00 0.00 1.82
2494 3829 7.360101 GCTTCATAGACGAAAGAGCAACTAAAA 60.360 37.037 0.00 0.00 0.00 1.52
2495 3830 6.090898 GCTTCATAGACGAAAGAGCAACTAAA 59.909 38.462 0.00 0.00 0.00 1.85
2496 3831 5.577164 GCTTCATAGACGAAAGAGCAACTAA 59.423 40.000 0.00 0.00 0.00 2.24
2497 3832 5.103000 GCTTCATAGACGAAAGAGCAACTA 58.897 41.667 0.00 0.00 0.00 2.24
2498 3833 3.929610 GCTTCATAGACGAAAGAGCAACT 59.070 43.478 0.00 0.00 0.00 3.16
2499 3834 3.679980 TGCTTCATAGACGAAAGAGCAAC 59.320 43.478 0.00 0.00 0.00 4.17
2500 3835 3.679980 GTGCTTCATAGACGAAAGAGCAA 59.320 43.478 0.00 0.00 28.93 3.91
2501 3836 3.254060 GTGCTTCATAGACGAAAGAGCA 58.746 45.455 0.00 0.00 0.00 4.26
2502 3837 2.605366 GGTGCTTCATAGACGAAAGAGC 59.395 50.000 0.00 0.00 0.00 4.09
2503 3838 3.849911 TGGTGCTTCATAGACGAAAGAG 58.150 45.455 0.00 0.00 0.00 2.85
2504 3839 3.953712 TGGTGCTTCATAGACGAAAGA 57.046 42.857 0.00 0.00 0.00 2.52
2505 3840 6.042777 TCTTATGGTGCTTCATAGACGAAAG 58.957 40.000 0.00 0.00 32.05 2.62
2506 3841 5.972935 TCTTATGGTGCTTCATAGACGAAA 58.027 37.500 0.00 0.00 32.05 3.46
2507 3842 5.592104 TCTTATGGTGCTTCATAGACGAA 57.408 39.130 0.00 0.00 32.05 3.85
2508 3843 5.791336 ATCTTATGGTGCTTCATAGACGA 57.209 39.130 0.00 0.00 32.05 4.20
2509 3844 6.479990 TCAAATCTTATGGTGCTTCATAGACG 59.520 38.462 0.00 0.00 32.05 4.18
2510 3845 7.041508 CCTCAAATCTTATGGTGCTTCATAGAC 60.042 40.741 0.00 0.00 32.05 2.59
2511 3846 6.994496 CCTCAAATCTTATGGTGCTTCATAGA 59.006 38.462 0.00 0.00 32.05 1.98
2512 3847 6.769822 ACCTCAAATCTTATGGTGCTTCATAG 59.230 38.462 0.00 0.00 32.05 2.23
2513 3848 6.662755 ACCTCAAATCTTATGGTGCTTCATA 58.337 36.000 0.00 0.00 0.00 2.15
2514 3849 5.513233 ACCTCAAATCTTATGGTGCTTCAT 58.487 37.500 0.00 0.00 0.00 2.57
2515 3850 4.922206 ACCTCAAATCTTATGGTGCTTCA 58.078 39.130 0.00 0.00 0.00 3.02
2516 3851 5.189180 AGACCTCAAATCTTATGGTGCTTC 58.811 41.667 0.00 0.00 0.00 3.86
2517 3852 5.184892 AGACCTCAAATCTTATGGTGCTT 57.815 39.130 0.00 0.00 0.00 3.91
2518 3853 4.851639 AGACCTCAAATCTTATGGTGCT 57.148 40.909 0.00 0.00 0.00 4.40
2519 3854 4.943705 TGAAGACCTCAAATCTTATGGTGC 59.056 41.667 0.00 0.00 36.53 5.01
2520 3855 7.636150 AATGAAGACCTCAAATCTTATGGTG 57.364 36.000 0.00 0.00 37.67 4.17
2521 3856 7.890127 TGAAATGAAGACCTCAAATCTTATGGT 59.110 33.333 0.00 0.00 37.67 3.55
2522 3857 8.284945 TGAAATGAAGACCTCAAATCTTATGG 57.715 34.615 0.00 0.00 37.67 2.74
2523 3858 9.565213 GTTGAAATGAAGACCTCAAATCTTATG 57.435 33.333 0.00 0.00 37.67 1.90
2524 3859 8.743714 GGTTGAAATGAAGACCTCAAATCTTAT 58.256 33.333 0.00 0.00 37.67 1.73
2525 3860 7.176690 GGGTTGAAATGAAGACCTCAAATCTTA 59.823 37.037 0.00 0.00 37.67 2.10
2526 3861 6.015095 GGGTTGAAATGAAGACCTCAAATCTT 60.015 38.462 0.00 0.00 37.67 2.40
2527 3862 5.478332 GGGTTGAAATGAAGACCTCAAATCT 59.522 40.000 0.00 0.00 37.67 2.40
2528 3863 5.336770 GGGGTTGAAATGAAGACCTCAAATC 60.337 44.000 0.00 0.00 37.67 2.17
2529 3864 4.528206 GGGGTTGAAATGAAGACCTCAAAT 59.472 41.667 0.00 0.00 37.67 2.32
2530 3865 3.895041 GGGGTTGAAATGAAGACCTCAAA 59.105 43.478 0.00 0.00 37.67 2.69
2531 3866 3.117322 TGGGGTTGAAATGAAGACCTCAA 60.117 43.478 0.00 0.00 39.60 3.02
2532 3867 2.445145 TGGGGTTGAAATGAAGACCTCA 59.555 45.455 0.00 0.00 40.23 3.86
2533 3868 3.154827 TGGGGTTGAAATGAAGACCTC 57.845 47.619 0.00 0.00 33.15 3.85
2534 3869 3.611025 TTGGGGTTGAAATGAAGACCT 57.389 42.857 0.00 0.00 32.73 3.85
2535 3870 4.890158 ATTTGGGGTTGAAATGAAGACC 57.110 40.909 0.00 0.00 0.00 3.85
2536 3871 7.441836 AGTTAATTTGGGGTTGAAATGAAGAC 58.558 34.615 0.00 0.00 0.00 3.01
2537 3872 7.610580 AGTTAATTTGGGGTTGAAATGAAGA 57.389 32.000 0.00 0.00 0.00 2.87
2538 3873 8.364142 TGTAGTTAATTTGGGGTTGAAATGAAG 58.636 33.333 0.00 0.00 0.00 3.02
2539 3874 8.251383 TGTAGTTAATTTGGGGTTGAAATGAA 57.749 30.769 0.00 0.00 0.00 2.57
2540 3875 7.039363 CCTGTAGTTAATTTGGGGTTGAAATGA 60.039 37.037 0.00 0.00 0.00 2.57
2541 3876 7.096551 CCTGTAGTTAATTTGGGGTTGAAATG 58.903 38.462 0.00 0.00 0.00 2.32
2542 3877 6.785466 ACCTGTAGTTAATTTGGGGTTGAAAT 59.215 34.615 0.00 0.00 0.00 2.17
2543 3878 6.137559 ACCTGTAGTTAATTTGGGGTTGAAA 58.862 36.000 0.00 0.00 0.00 2.69
2544 3879 5.707495 ACCTGTAGTTAATTTGGGGTTGAA 58.293 37.500 0.00 0.00 0.00 2.69
2545 3880 5.318630 GACCTGTAGTTAATTTGGGGTTGA 58.681 41.667 0.00 0.00 0.00 3.18
2546 3881 4.461431 GGACCTGTAGTTAATTTGGGGTTG 59.539 45.833 0.00 0.00 0.00 3.77
2547 3882 4.106663 TGGACCTGTAGTTAATTTGGGGTT 59.893 41.667 0.00 0.00 0.00 4.11
2548 3883 3.658705 TGGACCTGTAGTTAATTTGGGGT 59.341 43.478 0.00 0.00 0.00 4.95
2549 3884 4.263771 ACTGGACCTGTAGTTAATTTGGGG 60.264 45.833 1.49 0.00 0.00 4.96
2550 3885 4.918588 ACTGGACCTGTAGTTAATTTGGG 58.081 43.478 1.49 0.00 0.00 4.12
2551 3886 4.941873 GGACTGGACCTGTAGTTAATTTGG 59.058 45.833 3.67 0.00 0.00 3.28
2552 3887 5.556915 TGGACTGGACCTGTAGTTAATTTG 58.443 41.667 3.67 0.00 0.00 2.32
2553 3888 5.836024 TGGACTGGACCTGTAGTTAATTT 57.164 39.130 3.67 0.00 0.00 1.82
2554 3889 5.745227 CATGGACTGGACCTGTAGTTAATT 58.255 41.667 3.67 0.00 0.00 1.40
2555 3890 5.359194 CATGGACTGGACCTGTAGTTAAT 57.641 43.478 3.67 0.00 0.00 1.40
2556 3891 4.819105 CATGGACTGGACCTGTAGTTAA 57.181 45.455 3.67 0.00 0.00 2.01
2569 3904 3.007290 TCTGAGAACTTCACCATGGACTG 59.993 47.826 21.47 7.48 0.00 3.51
2570 3905 3.007398 GTCTGAGAACTTCACCATGGACT 59.993 47.826 21.47 5.57 0.00 3.85
2571 3906 3.330267 GTCTGAGAACTTCACCATGGAC 58.670 50.000 21.47 0.00 0.00 4.02
2572 3907 2.303022 GGTCTGAGAACTTCACCATGGA 59.697 50.000 21.47 0.00 0.00 3.41
2573 3908 2.304180 AGGTCTGAGAACTTCACCATGG 59.696 50.000 11.19 11.19 0.00 3.66
2574 3909 3.332919 CAGGTCTGAGAACTTCACCATG 58.667 50.000 0.00 0.00 0.00 3.66
2575 3910 2.304180 CCAGGTCTGAGAACTTCACCAT 59.696 50.000 0.00 0.00 0.00 3.55
2576 3911 1.694150 CCAGGTCTGAGAACTTCACCA 59.306 52.381 0.00 0.00 0.00 4.17
2577 3912 1.002544 CCCAGGTCTGAGAACTTCACC 59.997 57.143 0.00 0.00 0.00 4.02
2578 3913 1.002544 CCCCAGGTCTGAGAACTTCAC 59.997 57.143 0.00 0.00 0.00 3.18
2579 3914 1.352083 CCCCAGGTCTGAGAACTTCA 58.648 55.000 0.00 0.00 0.00 3.02
2580 3915 0.615850 CCCCCAGGTCTGAGAACTTC 59.384 60.000 0.00 0.00 0.00 3.01
2581 3916 2.778899 CCCCCAGGTCTGAGAACTT 58.221 57.895 0.00 0.00 0.00 2.66
2582 3917 4.569214 CCCCCAGGTCTGAGAACT 57.431 61.111 0.00 0.00 0.00 3.01
2596 3931 1.761198 AGTAATACGAGCACTTCCCCC 59.239 52.381 0.00 0.00 0.00 5.40
2597 3932 3.538634 AAGTAATACGAGCACTTCCCC 57.461 47.619 0.00 0.00 0.00 4.81
2598 3933 4.933400 TCAAAAGTAATACGAGCACTTCCC 59.067 41.667 0.00 0.00 31.43 3.97
2599 3934 5.638234 ACTCAAAAGTAATACGAGCACTTCC 59.362 40.000 0.00 0.00 32.59 3.46
2600 3935 6.707599 ACTCAAAAGTAATACGAGCACTTC 57.292 37.500 0.00 0.00 32.59 3.01
2601 3936 6.565999 GCAACTCAAAAGTAATACGAGCACTT 60.566 38.462 0.00 0.00 33.48 3.16
2602 3937 5.107065 GCAACTCAAAAGTAATACGAGCACT 60.107 40.000 0.00 0.00 33.48 4.40
2603 3938 5.080068 GCAACTCAAAAGTAATACGAGCAC 58.920 41.667 0.00 0.00 33.48 4.40
2604 3939 4.994852 AGCAACTCAAAAGTAATACGAGCA 59.005 37.500 0.00 0.00 33.48 4.26
2605 3940 5.348997 AGAGCAACTCAAAAGTAATACGAGC 59.651 40.000 0.00 0.00 33.48 5.03
2606 3941 6.952935 AGAGCAACTCAAAAGTAATACGAG 57.047 37.500 0.00 0.00 33.48 4.18
2609 3944 7.573627 ACGAAAGAGCAACTCAAAAGTAATAC 58.426 34.615 0.00 0.00 33.48 1.89
2611 3946 6.564125 CGACGAAAGAGCAACTCAAAAGTAAT 60.564 38.462 0.00 0.00 33.48 1.89
2615 3950 3.001330 ACGACGAAAGAGCAACTCAAAAG 59.999 43.478 0.00 0.00 32.06 2.27
2617 3952 2.284150 CACGACGAAAGAGCAACTCAAA 59.716 45.455 0.00 0.00 32.06 2.69
2618 3953 1.858458 CACGACGAAAGAGCAACTCAA 59.142 47.619 0.00 0.00 32.06 3.02
2622 3957 1.204312 GGCACGACGAAAGAGCAAC 59.796 57.895 0.00 0.00 0.00 4.17
2631 3966 1.870055 GAGTAGGGTTGGCACGACGA 61.870 60.000 0.00 0.00 0.00 4.20
2633 3968 0.669625 GTGAGTAGGGTTGGCACGAC 60.670 60.000 0.00 0.00 0.00 4.34
2634 3969 0.830444 AGTGAGTAGGGTTGGCACGA 60.830 55.000 0.00 0.00 34.82 4.35
2635 3970 0.034896 AAGTGAGTAGGGTTGGCACG 59.965 55.000 0.00 0.00 34.82 5.34
2638 3975 1.348036 ACTGAAGTGAGTAGGGTTGGC 59.652 52.381 0.00 0.00 0.00 4.52
2651 3988 4.003648 GCTTGTAATGGTGCTACTGAAGT 58.996 43.478 0.00 0.00 0.00 3.01
2654 3991 3.244387 TGTGCTTGTAATGGTGCTACTGA 60.244 43.478 0.00 0.00 0.00 3.41
2655 3992 3.073678 TGTGCTTGTAATGGTGCTACTG 58.926 45.455 0.00 0.00 0.00 2.74
2657 3994 3.731867 GCATGTGCTTGTAATGGTGCTAC 60.732 47.826 0.00 0.00 38.21 3.58
2659 3996 1.203052 GCATGTGCTTGTAATGGTGCT 59.797 47.619 0.00 0.00 38.21 4.40
2675 4028 0.240678 TGCTAAGGTTTGCACGCATG 59.759 50.000 0.00 0.00 34.17 4.06
2677 4030 0.817634 ACTGCTAAGGTTTGCACGCA 60.818 50.000 0.00 0.00 35.25 5.24
2687 4040 0.251341 AACCCCTGCAACTGCTAAGG 60.251 55.000 2.95 2.35 42.66 2.69
2736 4191 2.342648 GCGGTTCAAGAGTCCGGT 59.657 61.111 0.00 0.00 43.77 5.28
2740 4195 1.403514 CCTGAGAGCGGTTCAAGAGTC 60.404 57.143 0.00 0.00 0.00 3.36
2743 4198 1.293498 GCCTGAGAGCGGTTCAAGA 59.707 57.895 0.00 0.00 0.00 3.02
2744 4199 1.743252 GGCCTGAGAGCGGTTCAAG 60.743 63.158 0.00 0.00 0.00 3.02
2745 4200 2.217038 AGGCCTGAGAGCGGTTCAA 61.217 57.895 3.11 0.00 0.00 2.69
2746 4201 2.604686 AGGCCTGAGAGCGGTTCA 60.605 61.111 3.11 0.00 0.00 3.18
2747 4202 2.125350 CAGGCCTGAGAGCGGTTC 60.125 66.667 29.88 0.00 0.00 3.62
2748 4203 2.604686 TCAGGCCTGAGAGCGGTT 60.605 61.111 32.00 0.00 34.14 4.44
2749 4204 3.386237 GTCAGGCCTGAGAGCGGT 61.386 66.667 35.92 0.00 40.75 5.68
2750 4205 4.504916 CGTCAGGCCTGAGAGCGG 62.505 72.222 35.92 17.90 40.75 5.52
2751 4206 2.780094 ATCGTCAGGCCTGAGAGCG 61.780 63.158 35.92 31.92 40.75 5.03
2752 4207 1.227205 CATCGTCAGGCCTGAGAGC 60.227 63.158 35.92 22.48 40.75 4.09
2754 4209 1.305297 ACCATCGTCAGGCCTGAGA 60.305 57.895 35.92 30.38 40.75 3.27
2755 4210 1.153489 CACCATCGTCAGGCCTGAG 60.153 63.158 35.92 26.67 40.75 3.35
2756 4211 2.659063 CCACCATCGTCAGGCCTGA 61.659 63.158 32.00 32.00 37.24 3.86
2758 4213 4.101448 GCCACCATCGTCAGGCCT 62.101 66.667 0.00 0.00 41.25 5.19
2763 4218 4.451150 GAGGCGCCACCATCGTCA 62.451 66.667 31.54 0.00 43.14 4.35
2769 4227 2.604686 AGAAGAGAGGCGCCACCA 60.605 61.111 31.54 0.00 43.14 4.17
2775 4233 1.518133 CTTGCGGAGAAGAGAGGCG 60.518 63.158 0.00 0.00 0.00 5.52
2779 4237 0.891373 CCTGACTTGCGGAGAAGAGA 59.109 55.000 0.00 0.00 0.00 3.10
2791 4249 2.616510 GCAGCAAGATGTACCCTGACTT 60.617 50.000 0.00 0.00 0.00 3.01
2793 4251 1.373570 GCAGCAAGATGTACCCTGAC 58.626 55.000 0.00 0.00 0.00 3.51
2794 4252 0.108186 CGCAGCAAGATGTACCCTGA 60.108 55.000 0.00 0.00 0.00 3.86
2795 4253 0.391661 ACGCAGCAAGATGTACCCTG 60.392 55.000 0.00 0.00 0.00 4.45
2796 4254 0.108138 GACGCAGCAAGATGTACCCT 60.108 55.000 0.00 0.00 0.00 4.34
2797 4255 0.391130 TGACGCAGCAAGATGTACCC 60.391 55.000 0.00 0.00 0.00 3.69
2798 4256 1.002366 CTGACGCAGCAAGATGTACC 58.998 55.000 0.00 0.00 0.00 3.34
2799 4257 1.002366 CCTGACGCAGCAAGATGTAC 58.998 55.000 0.00 0.00 0.00 2.90
2800 4258 0.108186 CCCTGACGCAGCAAGATGTA 60.108 55.000 0.00 0.00 0.00 2.29
2801 4259 1.376424 CCCTGACGCAGCAAGATGT 60.376 57.895 0.00 0.00 0.00 3.06
2802 4260 0.108186 TACCCTGACGCAGCAAGATG 60.108 55.000 0.00 0.00 0.00 2.90
2803 4261 0.108138 GTACCCTGACGCAGCAAGAT 60.108 55.000 0.00 0.00 0.00 2.40
2804 4262 1.292223 GTACCCTGACGCAGCAAGA 59.708 57.895 0.00 0.00 0.00 3.02
2805 4263 0.391661 ATGTACCCTGACGCAGCAAG 60.392 55.000 0.00 0.00 0.00 4.01
2806 4264 0.391130 GATGTACCCTGACGCAGCAA 60.391 55.000 0.00 0.00 0.00 3.91
2807 4265 1.218047 GATGTACCCTGACGCAGCA 59.782 57.895 0.00 0.00 0.00 4.41
2808 4266 0.108138 AAGATGTACCCTGACGCAGC 60.108 55.000 1.84 0.00 0.00 5.25
2809 4267 1.645034 CAAGATGTACCCTGACGCAG 58.355 55.000 0.00 0.52 0.00 5.18
2810 4268 0.391130 GCAAGATGTACCCTGACGCA 60.391 55.000 0.00 0.00 0.00 5.24
2811 4269 0.108138 AGCAAGATGTACCCTGACGC 60.108 55.000 0.00 0.00 0.00 5.19
2812 4270 1.645034 CAGCAAGATGTACCCTGACG 58.355 55.000 0.00 0.00 0.00 4.35
2838 4296 7.047460 AGAGTTTCTCATGCTGATTTGTTTT 57.953 32.000 0.00 0.00 32.06 2.43
2842 4300 6.497785 AGAAGAGTTTCTCATGCTGATTTG 57.502 37.500 0.00 0.00 39.46 2.32
2884 4342 5.279256 GCCTAAGTATGGTGGAGAATCTCTC 60.279 48.000 10.38 2.06 42.66 3.20
2885 4343 4.591072 GCCTAAGTATGGTGGAGAATCTCT 59.409 45.833 10.38 0.00 33.73 3.10
2886 4344 4.262678 GGCCTAAGTATGGTGGAGAATCTC 60.263 50.000 0.71 0.71 33.73 2.75
2887 4345 3.648545 GGCCTAAGTATGGTGGAGAATCT 59.351 47.826 0.00 0.00 33.73 2.40
2888 4346 3.648545 AGGCCTAAGTATGGTGGAGAATC 59.351 47.826 1.29 0.00 0.00 2.52
2889 4347 3.392616 CAGGCCTAAGTATGGTGGAGAAT 59.607 47.826 3.98 0.00 0.00 2.40
2890 4348 2.771943 CAGGCCTAAGTATGGTGGAGAA 59.228 50.000 3.98 0.00 0.00 2.87
2891 4349 2.023404 TCAGGCCTAAGTATGGTGGAGA 60.023 50.000 3.98 0.00 0.00 3.71
2892 4350 2.398588 TCAGGCCTAAGTATGGTGGAG 58.601 52.381 3.98 0.00 0.00 3.86
2893 4351 2.561209 TCAGGCCTAAGTATGGTGGA 57.439 50.000 3.98 0.00 0.00 4.02
2894 4352 3.545703 CTTTCAGGCCTAAGTATGGTGG 58.454 50.000 3.98 0.00 0.00 4.61
2895 4353 2.945668 GCTTTCAGGCCTAAGTATGGTG 59.054 50.000 3.98 0.00 0.00 4.17
2896 4354 2.576191 TGCTTTCAGGCCTAAGTATGGT 59.424 45.455 3.98 0.00 0.00 3.55
2897 4355 3.209410 CTGCTTTCAGGCCTAAGTATGG 58.791 50.000 3.98 0.00 36.68 2.74
2898 4356 2.615912 GCTGCTTTCAGGCCTAAGTATG 59.384 50.000 3.98 2.71 40.65 2.39
2915 4373 5.351465 TGTCTTGCAAATTACTAGTAGCTGC 59.649 40.000 18.77 18.77 0.00 5.25
2973 4431 1.828595 GCCGGAAATTTACATTGGGGT 59.171 47.619 5.05 0.00 0.00 4.95
2975 4433 3.601443 TTGCCGGAAATTTACATTGGG 57.399 42.857 5.05 0.00 0.00 4.12
2984 4442 8.450180 CAAAGCTTTATTTAATTGCCGGAAATT 58.550 29.630 23.94 23.94 34.24 1.82
2992 4450 8.778640 CAAAATCGCAAAGCTTTATTTAATTGC 58.221 29.630 12.25 8.39 39.67 3.56
3022 4480 6.183360 GGGAACTTGAATACTTGCAAGGATAC 60.183 42.308 29.18 17.50 44.33 2.24
3040 4500 6.499106 AATGGAAGTTTCATTTGGGAACTT 57.501 33.333 3.33 0.52 31.49 2.66
3055 4515 9.410556 CATATTTCGTTCTTTGAAAATGGAAGT 57.589 29.630 0.00 0.00 38.68 3.01
3092 4552 4.359434 TGACACTGTAAGGTTATTGGCA 57.641 40.909 0.00 0.00 39.30 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.