Multiple sequence alignment - TraesCS1B01G238700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G238700 | chr1B | 100.000 | 8692 | 0 | 0 | 1 | 8692 | 426847631 | 426856322 | 0.000000e+00 | 16052.0 |
1 | TraesCS1B01G238700 | chr1B | 86.207 | 145 | 17 | 2 | 7986 | 8128 | 66946175 | 66946318 | 4.200000e-33 | 154.0 |
2 | TraesCS1B01G238700 | chr1D | 98.015 | 4483 | 83 | 6 | 2510 | 6988 | 315029888 | 315034368 | 0.000000e+00 | 7781.0 |
3 | TraesCS1B01G238700 | chr1D | 93.041 | 1753 | 52 | 22 | 772 | 2515 | 315022630 | 315024321 | 0.000000e+00 | 2497.0 |
4 | TraesCS1B01G238700 | chr1D | 95.850 | 1542 | 48 | 8 | 7158 | 8692 | 315034397 | 315035929 | 0.000000e+00 | 2479.0 |
5 | TraesCS1B01G238700 | chr1D | 86.721 | 738 | 93 | 3 | 1 | 734 | 439934778 | 439935514 | 0.000000e+00 | 815.0 |
6 | TraesCS1B01G238700 | chr1D | 74.267 | 750 | 169 | 21 | 7 | 743 | 432363557 | 432364295 | 2.370000e-75 | 294.0 |
7 | TraesCS1B01G238700 | chr1D | 74.405 | 672 | 160 | 11 | 73 | 737 | 145378123 | 145378789 | 2.390000e-70 | 278.0 |
8 | TraesCS1B01G238700 | chr1D | 89.000 | 200 | 16 | 4 | 7675 | 7872 | 52360271 | 52360466 | 8.720000e-60 | 243.0 |
9 | TraesCS1B01G238700 | chr1D | 76.415 | 424 | 89 | 9 | 42 | 459 | 145484862 | 145485280 | 1.470000e-52 | 219.0 |
10 | TraesCS1B01G238700 | chr1D | 70.822 | 377 | 97 | 9 | 312 | 680 | 455645260 | 455644889 | 3.370000e-09 | 75.0 |
11 | TraesCS1B01G238700 | chr1D | 100.000 | 32 | 0 | 0 | 632 | 663 | 9908080 | 9908111 | 9.420000e-05 | 60.2 |
12 | TraesCS1B01G238700 | chr1D | 89.362 | 47 | 5 | 0 | 632 | 678 | 10053155 | 10053109 | 9.420000e-05 | 60.2 |
13 | TraesCS1B01G238700 | chr1A | 96.756 | 2959 | 83 | 7 | 4038 | 6988 | 395481942 | 395484895 | 0.000000e+00 | 4920.0 |
14 | TraesCS1B01G238700 | chr1A | 88.240 | 1165 | 112 | 15 | 2898 | 4050 | 395480735 | 395481886 | 0.000000e+00 | 1369.0 |
15 | TraesCS1B01G238700 | chr1A | 90.550 | 836 | 64 | 10 | 7859 | 8690 | 395550984 | 395551808 | 0.000000e+00 | 1092.0 |
16 | TraesCS1B01G238700 | chr1A | 86.387 | 955 | 86 | 22 | 1599 | 2530 | 395479461 | 395480394 | 0.000000e+00 | 1003.0 |
17 | TraesCS1B01G238700 | chr1A | 96.648 | 537 | 18 | 0 | 7152 | 7688 | 395485004 | 395485540 | 0.000000e+00 | 893.0 |
18 | TraesCS1B01G238700 | chr1A | 90.415 | 386 | 16 | 6 | 878 | 1261 | 395478834 | 395479200 | 1.010000e-133 | 488.0 |
19 | TraesCS1B01G238700 | chr1A | 82.647 | 340 | 37 | 9 | 2576 | 2912 | 395480398 | 395480718 | 1.850000e-71 | 281.0 |
20 | TraesCS1B01G238700 | chr1A | 90.104 | 192 | 15 | 2 | 7666 | 7857 | 233421529 | 233421342 | 6.740000e-61 | 246.0 |
21 | TraesCS1B01G238700 | chr1A | 86.449 | 214 | 17 | 6 | 1317 | 1527 | 395479218 | 395479422 | 3.160000e-54 | 224.0 |
22 | TraesCS1B01G238700 | chr2A | 88.378 | 740 | 80 | 5 | 7 | 743 | 200342767 | 200342031 | 0.000000e+00 | 885.0 |
23 | TraesCS1B01G238700 | chr4A | 88.000 | 750 | 81 | 5 | 1 | 743 | 737437835 | 737437088 | 0.000000e+00 | 878.0 |
24 | TraesCS1B01G238700 | chr4A | 93.642 | 173 | 8 | 1 | 7688 | 7860 | 732790192 | 732790023 | 1.120000e-63 | 255.0 |
25 | TraesCS1B01G238700 | chr7D | 87.936 | 746 | 86 | 2 | 1 | 743 | 5157152 | 5157896 | 0.000000e+00 | 876.0 |
26 | TraesCS1B01G238700 | chr7D | 74.967 | 747 | 180 | 5 | 1 | 743 | 404379258 | 404378515 | 3.890000e-88 | 337.0 |
27 | TraesCS1B01G238700 | chr7D | 74.800 | 750 | 180 | 6 | 1 | 743 | 404610181 | 404609434 | 6.510000e-86 | 329.0 |
28 | TraesCS1B01G238700 | chr7A | 87.952 | 747 | 85 | 3 | 1 | 743 | 6420568 | 6421313 | 0.000000e+00 | 876.0 |
29 | TraesCS1B01G238700 | chr3A | 85.929 | 732 | 98 | 4 | 1 | 729 | 383668336 | 383669065 | 0.000000e+00 | 776.0 |
30 | TraesCS1B01G238700 | chr3A | 91.925 | 161 | 8 | 3 | 7005 | 7160 | 130848281 | 130848121 | 4.080000e-53 | 220.0 |
31 | TraesCS1B01G238700 | chr3D | 85.054 | 736 | 101 | 5 | 1 | 734 | 290847072 | 290847800 | 0.000000e+00 | 741.0 |
32 | TraesCS1B01G238700 | chr3D | 78.302 | 742 | 153 | 7 | 7 | 743 | 5093176 | 5092438 | 1.020000e-128 | 472.0 |
33 | TraesCS1B01G238700 | chr3D | 92.121 | 165 | 4 | 3 | 7005 | 7160 | 272098434 | 272098598 | 3.160000e-54 | 224.0 |
34 | TraesCS1B01G238700 | chr3B | 85.294 | 646 | 91 | 3 | 91 | 734 | 383685571 | 383686214 | 0.000000e+00 | 664.0 |
35 | TraesCS1B01G238700 | chr3B | 92.727 | 165 | 10 | 2 | 7002 | 7164 | 764362903 | 764363067 | 4.060000e-58 | 237.0 |
36 | TraesCS1B01G238700 | chr5D | 77.898 | 742 | 145 | 18 | 7 | 741 | 266087701 | 266086972 | 2.230000e-120 | 444.0 |
37 | TraesCS1B01G238700 | chr5D | 76.117 | 515 | 109 | 11 | 220 | 729 | 399908341 | 399907836 | 3.110000e-64 | 257.0 |
38 | TraesCS1B01G238700 | chr5D | 91.228 | 171 | 5 | 5 | 7000 | 7160 | 419796042 | 419795872 | 3.160000e-54 | 224.0 |
39 | TraesCS1B01G238700 | chr5D | 90.698 | 172 | 7 | 4 | 7002 | 7164 | 214084999 | 214084828 | 4.080000e-53 | 220.0 |
40 | TraesCS1B01G238700 | chr4D | 77.524 | 743 | 155 | 10 | 6 | 741 | 121765223 | 121764486 | 3.730000e-118 | 436.0 |
41 | TraesCS1B01G238700 | chr4D | 92.222 | 180 | 11 | 1 | 7678 | 7857 | 74373304 | 74373128 | 1.450000e-62 | 252.0 |
42 | TraesCS1B01G238700 | chr2B | 75.705 | 745 | 175 | 5 | 1 | 741 | 615303302 | 615304044 | 1.380000e-97 | 368.0 |
43 | TraesCS1B01G238700 | chr2B | 91.071 | 168 | 7 | 4 | 7002 | 7161 | 21914488 | 21914655 | 4.080000e-53 | 220.0 |
44 | TraesCS1B01G238700 | chr2B | 86.014 | 143 | 18 | 2 | 7986 | 8126 | 662689923 | 662690065 | 1.510000e-32 | 152.0 |
45 | TraesCS1B01G238700 | chr6B | 76.428 | 683 | 152 | 8 | 1 | 678 | 16954968 | 16955646 | 2.310000e-95 | 361.0 |
46 | TraesCS1B01G238700 | chr6B | 91.515 | 165 | 7 | 4 | 7004 | 7161 | 698961085 | 698961249 | 4.080000e-53 | 220.0 |
47 | TraesCS1B01G238700 | chr6B | 90.116 | 172 | 8 | 4 | 6999 | 7161 | 720565012 | 720565183 | 1.900000e-51 | 215.0 |
48 | TraesCS1B01G238700 | chr6B | 86.517 | 89 | 12 | 0 | 8136 | 8224 | 639154271 | 639154359 | 2.000000e-16 | 99.0 |
49 | TraesCS1B01G238700 | chr2D | 76.480 | 625 | 131 | 7 | 49 | 669 | 467967730 | 467968342 | 8.410000e-85 | 326.0 |
50 | TraesCS1B01G238700 | chr2D | 92.655 | 177 | 10 | 1 | 7681 | 7857 | 426427792 | 426427965 | 1.450000e-62 | 252.0 |
51 | TraesCS1B01G238700 | chr2D | 92.222 | 180 | 9 | 3 | 7686 | 7864 | 95653227 | 95653402 | 5.210000e-62 | 250.0 |
52 | TraesCS1B01G238700 | chr4B | 90.957 | 188 | 12 | 3 | 7687 | 7872 | 541445120 | 541444936 | 1.870000e-61 | 248.0 |
53 | TraesCS1B01G238700 | chr4B | 74.390 | 574 | 135 | 12 | 116 | 684 | 326103221 | 326102655 | 1.460000e-57 | 235.0 |
54 | TraesCS1B01G238700 | chr5B | 88.442 | 199 | 17 | 4 | 7667 | 7865 | 313075435 | 313075243 | 1.460000e-57 | 235.0 |
55 | TraesCS1B01G238700 | chr5B | 90.123 | 81 | 8 | 0 | 8037 | 8117 | 177645158 | 177645238 | 1.190000e-18 | 106.0 |
56 | TraesCS1B01G238700 | chr6A | 92.169 | 166 | 4 | 5 | 7005 | 7161 | 442078487 | 442078652 | 8.780000e-55 | 226.0 |
57 | TraesCS1B01G238700 | chr6D | 76.108 | 406 | 92 | 3 | 97 | 498 | 463728024 | 463727620 | 3.180000e-49 | 207.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G238700 | chr1B | 426847631 | 426856322 | 8691 | False | 16052.000000 | 16052 | 100.000000 | 1 | 8692 | 1 | chr1B.!!$F2 | 8691 |
1 | TraesCS1B01G238700 | chr1D | 315029888 | 315035929 | 6041 | False | 5130.000000 | 7781 | 96.932500 | 2510 | 8692 | 2 | chr1D.!!$F8 | 6182 |
2 | TraesCS1B01G238700 | chr1D | 315022630 | 315024321 | 1691 | False | 2497.000000 | 2497 | 93.041000 | 772 | 2515 | 1 | chr1D.!!$F5 | 1743 |
3 | TraesCS1B01G238700 | chr1D | 439934778 | 439935514 | 736 | False | 815.000000 | 815 | 86.721000 | 1 | 734 | 1 | chr1D.!!$F7 | 733 |
4 | TraesCS1B01G238700 | chr1D | 432363557 | 432364295 | 738 | False | 294.000000 | 294 | 74.267000 | 7 | 743 | 1 | chr1D.!!$F6 | 736 |
5 | TraesCS1B01G238700 | chr1D | 145378123 | 145378789 | 666 | False | 278.000000 | 278 | 74.405000 | 73 | 737 | 1 | chr1D.!!$F3 | 664 |
6 | TraesCS1B01G238700 | chr1A | 395478834 | 395485540 | 6706 | False | 1311.142857 | 4920 | 89.648857 | 878 | 7688 | 7 | chr1A.!!$F2 | 6810 |
7 | TraesCS1B01G238700 | chr1A | 395550984 | 395551808 | 824 | False | 1092.000000 | 1092 | 90.550000 | 7859 | 8690 | 1 | chr1A.!!$F1 | 831 |
8 | TraesCS1B01G238700 | chr2A | 200342031 | 200342767 | 736 | True | 885.000000 | 885 | 88.378000 | 7 | 743 | 1 | chr2A.!!$R1 | 736 |
9 | TraesCS1B01G238700 | chr4A | 737437088 | 737437835 | 747 | True | 878.000000 | 878 | 88.000000 | 1 | 743 | 1 | chr4A.!!$R2 | 742 |
10 | TraesCS1B01G238700 | chr7D | 5157152 | 5157896 | 744 | False | 876.000000 | 876 | 87.936000 | 1 | 743 | 1 | chr7D.!!$F1 | 742 |
11 | TraesCS1B01G238700 | chr7D | 404378515 | 404379258 | 743 | True | 337.000000 | 337 | 74.967000 | 1 | 743 | 1 | chr7D.!!$R1 | 742 |
12 | TraesCS1B01G238700 | chr7D | 404609434 | 404610181 | 747 | True | 329.000000 | 329 | 74.800000 | 1 | 743 | 1 | chr7D.!!$R2 | 742 |
13 | TraesCS1B01G238700 | chr7A | 6420568 | 6421313 | 745 | False | 876.000000 | 876 | 87.952000 | 1 | 743 | 1 | chr7A.!!$F1 | 742 |
14 | TraesCS1B01G238700 | chr3A | 383668336 | 383669065 | 729 | False | 776.000000 | 776 | 85.929000 | 1 | 729 | 1 | chr3A.!!$F1 | 728 |
15 | TraesCS1B01G238700 | chr3D | 290847072 | 290847800 | 728 | False | 741.000000 | 741 | 85.054000 | 1 | 734 | 1 | chr3D.!!$F2 | 733 |
16 | TraesCS1B01G238700 | chr3D | 5092438 | 5093176 | 738 | True | 472.000000 | 472 | 78.302000 | 7 | 743 | 1 | chr3D.!!$R1 | 736 |
17 | TraesCS1B01G238700 | chr3B | 383685571 | 383686214 | 643 | False | 664.000000 | 664 | 85.294000 | 91 | 734 | 1 | chr3B.!!$F1 | 643 |
18 | TraesCS1B01G238700 | chr5D | 266086972 | 266087701 | 729 | True | 444.000000 | 444 | 77.898000 | 7 | 741 | 1 | chr5D.!!$R2 | 734 |
19 | TraesCS1B01G238700 | chr5D | 399907836 | 399908341 | 505 | True | 257.000000 | 257 | 76.117000 | 220 | 729 | 1 | chr5D.!!$R3 | 509 |
20 | TraesCS1B01G238700 | chr4D | 121764486 | 121765223 | 737 | True | 436.000000 | 436 | 77.524000 | 6 | 741 | 1 | chr4D.!!$R2 | 735 |
21 | TraesCS1B01G238700 | chr2B | 615303302 | 615304044 | 742 | False | 368.000000 | 368 | 75.705000 | 1 | 741 | 1 | chr2B.!!$F2 | 740 |
22 | TraesCS1B01G238700 | chr6B | 16954968 | 16955646 | 678 | False | 361.000000 | 361 | 76.428000 | 1 | 678 | 1 | chr6B.!!$F1 | 677 |
23 | TraesCS1B01G238700 | chr2D | 467967730 | 467968342 | 612 | False | 326.000000 | 326 | 76.480000 | 49 | 669 | 1 | chr2D.!!$F3 | 620 |
24 | TraesCS1B01G238700 | chr4B | 326102655 | 326103221 | 566 | True | 235.000000 | 235 | 74.390000 | 116 | 684 | 1 | chr4B.!!$R1 | 568 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
917 | 946 | 0.321671 | CCTCTTTGTTCCTCTCGCCA | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 | F |
1318 | 1359 | 0.383737 | TTCGTTAAAGCAAGCACGCG | 60.384 | 50.000 | 3.53 | 3.53 | 36.85 | 6.01 | F |
1444 | 1487 | 0.608130 | TCAGCATAACACCGCAGAGT | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 | F |
1445 | 1488 | 1.001974 | TCAGCATAACACCGCAGAGTT | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 | F |
1447 | 1490 | 1.001974 | AGCATAACACCGCAGAGTTCA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 | F |
1611 | 1660 | 1.068055 | CAGGTTTCCAACTGCATCTGC | 60.068 | 52.381 | 0.00 | 0.00 | 42.50 | 4.26 | F |
3181 | 3293 | 1.544314 | GCTGATGCCCTGAGGATTACC | 60.544 | 57.143 | 0.00 | 0.00 | 33.47 | 2.85 | F |
4135 | 4324 | 2.746904 | TGCGGGAATTGATGTTGTAGTG | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 | F |
5442 | 5635 | 2.607038 | CGCTGTTACGCTATATGAGGCA | 60.607 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 | F |
6513 | 6706 | 0.881600 | GCACGGTTGGTTACCTTCGT | 60.882 | 55.000 | 2.07 | 7.15 | 45.40 | 3.85 | F |
6738 | 6931 | 2.025441 | TTGCGCGAACTTTGCACC | 59.975 | 55.556 | 12.10 | 0.00 | 38.55 | 5.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2481 | 2553 | 0.744874 | GCTGCTGGACATGAATGCAT | 59.255 | 50.000 | 0.00 | 0.00 | 33.02 | 3.96 | R |
3251 | 3363 | 0.676782 | GTTCGGGGACACATGAAGGG | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 | R |
3531 | 3643 | 4.771590 | ATGTGGATGACATGTCACAAAC | 57.228 | 40.909 | 30.09 | 24.76 | 44.12 | 2.93 | R |
3683 | 3797 | 1.369625 | GAGTGACAGCAATTACCCCG | 58.630 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 | R |
3832 | 3949 | 3.840124 | AACAAGAGGAAAAGAGGACGT | 57.160 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 | R |
3875 | 3992 | 7.210174 | TCCACATTATCTTCTGAAATACCGAG | 58.790 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 | R |
4947 | 5139 | 0.031917 | TTACGGCCCATCCCAGTCTA | 60.032 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 | R |
5910 | 6103 | 1.273606 | AGTGAAGCTAAGCTCTCGCAA | 59.726 | 47.619 | 0.00 | 0.00 | 38.25 | 4.85 | R |
7452 | 7658 | 0.461135 | ATTTCATGGCCAATGACGCC | 59.539 | 50.000 | 10.96 | 0.00 | 45.17 | 5.68 | R |
7657 | 7863 | 2.349590 | TGATTTGTGCATGGAGACTCG | 58.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 | R |
8129 | 8341 | 3.256960 | GGGAAGGGTGCAGGTGGA | 61.257 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
88 | 92 | 9.775854 | CAACATGTTTATGATTCTCTCTAGGAT | 57.224 | 33.333 | 8.77 | 0.00 | 37.73 | 3.24 |
271 | 279 | 1.236616 | TGACCCGAGCTTGCACAATG | 61.237 | 55.000 | 0.00 | 0.00 | 0.00 | 2.82 |
376 | 387 | 5.518848 | TGTGATATTGATGGTGCATTTCC | 57.481 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
377 | 388 | 5.202765 | TGTGATATTGATGGTGCATTTCCT | 58.797 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
378 | 389 | 5.068067 | TGTGATATTGATGGTGCATTTCCTG | 59.932 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
379 | 390 | 4.585581 | TGATATTGATGGTGCATTTCCTGG | 59.414 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
382 | 393 | 2.886913 | TGATGGTGCATTTCCTGGAAA | 58.113 | 42.857 | 23.08 | 23.08 | 35.94 | 3.13 |
400 | 411 | 3.498661 | GGAAACCCTGACTCCTTCAATGT | 60.499 | 47.826 | 0.00 | 0.00 | 32.21 | 2.71 |
401 | 412 | 4.263331 | GGAAACCCTGACTCCTTCAATGTA | 60.263 | 45.833 | 0.00 | 0.00 | 32.21 | 2.29 |
421 | 432 | 5.446860 | TGTAACGAACCTCCTCTCTATGAT | 58.553 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
422 | 433 | 5.892119 | TGTAACGAACCTCCTCTCTATGATT | 59.108 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
447 | 458 | 6.228616 | AGAAGACTAGATAAACCTTCTGCC | 57.771 | 41.667 | 0.00 | 0.00 | 41.17 | 4.85 |
514 | 525 | 0.459759 | CCTTCCCGGAGTAAACGAGC | 60.460 | 60.000 | 0.73 | 0.00 | 33.16 | 5.03 |
535 | 546 | 3.119137 | GCCTGTTTCTTGGTTGTTGAACT | 60.119 | 43.478 | 0.00 | 0.00 | 32.15 | 3.01 |
610 | 621 | 4.433186 | TTATGAAAACCCATTGTGCTCG | 57.567 | 40.909 | 0.00 | 0.00 | 0.00 | 5.03 |
630 | 642 | 8.968242 | GTGCTCGTCATTTTTCTTAAGAATTTT | 58.032 | 29.630 | 18.37 | 3.94 | 33.54 | 1.82 |
692 | 705 | 3.073062 | ACCACACAGTAGCCTCATTTTCT | 59.927 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
743 | 759 | 7.215789 | AGACTCTCATAAGCCAACAGAATATG | 58.784 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
744 | 760 | 6.294473 | ACTCTCATAAGCCAACAGAATATGG | 58.706 | 40.000 | 0.00 | 0.00 | 39.80 | 2.74 |
745 | 761 | 5.624159 | TCTCATAAGCCAACAGAATATGGG | 58.376 | 41.667 | 0.00 | 0.00 | 37.19 | 4.00 |
754 | 770 | 5.520376 | CAACAGAATATGGGTTGGGAATC | 57.480 | 43.478 | 0.00 | 0.00 | 38.52 | 2.52 |
755 | 771 | 4.184649 | ACAGAATATGGGTTGGGAATCC | 57.815 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
756 | 772 | 3.793827 | ACAGAATATGGGTTGGGAATCCT | 59.206 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
757 | 773 | 4.232820 | ACAGAATATGGGTTGGGAATCCTT | 59.767 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
758 | 774 | 5.435041 | ACAGAATATGGGTTGGGAATCCTTA | 59.565 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
759 | 775 | 6.068498 | ACAGAATATGGGTTGGGAATCCTTAA | 60.068 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
760 | 776 | 6.838612 | CAGAATATGGGTTGGGAATCCTTAAA | 59.161 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
761 | 777 | 7.344352 | CAGAATATGGGTTGGGAATCCTTAAAA | 59.656 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
762 | 778 | 7.904022 | AGAATATGGGTTGGGAATCCTTAAAAA | 59.096 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
815 | 831 | 4.000557 | GCGGTGCGCGTATGGATG | 62.001 | 66.667 | 8.43 | 0.00 | 44.55 | 3.51 |
816 | 832 | 3.337889 | CGGTGCGCGTATGGATGG | 61.338 | 66.667 | 8.43 | 0.00 | 0.00 | 3.51 |
817 | 833 | 3.649986 | GGTGCGCGTATGGATGGC | 61.650 | 66.667 | 8.43 | 0.00 | 0.00 | 4.40 |
818 | 834 | 3.649986 | GTGCGCGTATGGATGGCC | 61.650 | 66.667 | 8.43 | 0.00 | 0.00 | 5.36 |
833 | 849 | 3.529533 | GATGGCCATGGATCGATTAGAG | 58.470 | 50.000 | 26.56 | 0.00 | 0.00 | 2.43 |
834 | 850 | 1.625315 | TGGCCATGGATCGATTAGAGG | 59.375 | 52.381 | 18.40 | 1.35 | 0.00 | 3.69 |
837 | 853 | 2.093764 | GCCATGGATCGATTAGAGGAGG | 60.094 | 54.545 | 18.40 | 0.00 | 0.00 | 4.30 |
840 | 856 | 3.885976 | TGGATCGATTAGAGGAGGAGT | 57.114 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
841 | 857 | 3.757270 | TGGATCGATTAGAGGAGGAGTC | 58.243 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
842 | 858 | 3.086282 | GGATCGATTAGAGGAGGAGTCC | 58.914 | 54.545 | 0.00 | 0.00 | 44.33 | 3.85 |
843 | 859 | 3.498841 | GGATCGATTAGAGGAGGAGTCCA | 60.499 | 52.174 | 12.86 | 0.00 | 46.80 | 4.02 |
845 | 861 | 2.510382 | TCGATTAGAGGAGGAGTCCAGT | 59.490 | 50.000 | 12.86 | 0.00 | 46.80 | 4.00 |
917 | 946 | 0.321671 | CCTCTTTGTTCCTCTCGCCA | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
978 | 1007 | 1.302832 | CGAGCCAAGCAAAGGAGGT | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
1180 | 1220 | 3.414700 | CGATCTAATGGCCGCCGC | 61.415 | 66.667 | 4.58 | 0.00 | 0.00 | 6.53 |
1231 | 1272 | 3.308008 | CGCAGTCGATCGCTCGTG | 61.308 | 66.667 | 11.09 | 5.89 | 45.25 | 4.35 |
1232 | 1273 | 3.611792 | GCAGTCGATCGCTCGTGC | 61.612 | 66.667 | 11.09 | 12.12 | 45.25 | 5.34 |
1233 | 1274 | 2.951745 | CAGTCGATCGCTCGTGCC | 60.952 | 66.667 | 11.09 | 0.00 | 45.25 | 5.01 |
1234 | 1275 | 3.440415 | AGTCGATCGCTCGTGCCA | 61.440 | 61.111 | 11.09 | 0.00 | 45.25 | 4.92 |
1235 | 1276 | 2.506217 | GTCGATCGCTCGTGCCAA | 60.506 | 61.111 | 11.09 | 0.00 | 45.25 | 4.52 |
1236 | 1277 | 2.202610 | TCGATCGCTCGTGCCAAG | 60.203 | 61.111 | 11.09 | 0.00 | 45.25 | 3.61 |
1237 | 1278 | 2.202610 | CGATCGCTCGTGCCAAGA | 60.203 | 61.111 | 0.26 | 0.00 | 40.07 | 3.02 |
1238 | 1279 | 1.805539 | CGATCGCTCGTGCCAAGAA | 60.806 | 57.895 | 0.26 | 0.00 | 40.07 | 2.52 |
1239 | 1280 | 1.351430 | CGATCGCTCGTGCCAAGAAA | 61.351 | 55.000 | 0.26 | 0.00 | 40.07 | 2.52 |
1240 | 1281 | 1.009829 | GATCGCTCGTGCCAAGAAAT | 58.990 | 50.000 | 3.52 | 0.00 | 35.36 | 2.17 |
1241 | 1282 | 0.729116 | ATCGCTCGTGCCAAGAAATG | 59.271 | 50.000 | 3.52 | 0.00 | 35.36 | 2.32 |
1250 | 1291 | 2.406616 | CCAAGAAATGGGGGCGACG | 61.407 | 63.158 | 0.00 | 0.00 | 46.27 | 5.12 |
1318 | 1359 | 0.383737 | TTCGTTAAAGCAAGCACGCG | 60.384 | 50.000 | 3.53 | 3.53 | 36.85 | 6.01 |
1319 | 1360 | 2.417553 | CGTTAAAGCAAGCACGCGC | 61.418 | 57.895 | 5.73 | 0.00 | 36.85 | 6.86 |
1320 | 1361 | 2.127421 | TTAAAGCAAGCACGCGCG | 60.127 | 55.556 | 30.96 | 30.96 | 45.49 | 6.86 |
1321 | 1362 | 4.734920 | TAAAGCAAGCACGCGCGC | 62.735 | 61.111 | 32.58 | 23.91 | 45.49 | 6.86 |
1337 | 1378 | 1.209898 | CGCACGCATGTTGGAATGT | 59.790 | 52.632 | 0.00 | 0.00 | 0.00 | 2.71 |
1344 | 1385 | 3.129871 | CGCATGTTGGAATGTTGGTTTT | 58.870 | 40.909 | 0.00 | 0.00 | 0.00 | 2.43 |
1347 | 1388 | 3.550437 | TGTTGGAATGTTGGTTTTGGG | 57.450 | 42.857 | 0.00 | 0.00 | 0.00 | 4.12 |
1348 | 1389 | 2.217750 | GTTGGAATGTTGGTTTTGGGC | 58.782 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
1381 | 1424 | 3.378427 | GTCAATGCCCATCCAAACTCTAC | 59.622 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
1444 | 1487 | 0.608130 | TCAGCATAACACCGCAGAGT | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1445 | 1488 | 1.001974 | TCAGCATAACACCGCAGAGTT | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
1446 | 1489 | 1.394917 | CAGCATAACACCGCAGAGTTC | 59.605 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1447 | 1490 | 1.001974 | AGCATAACACCGCAGAGTTCA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1448 | 1491 | 2.009774 | GCATAACACCGCAGAGTTCAT | 58.990 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1449 | 1492 | 3.118775 | AGCATAACACCGCAGAGTTCATA | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
1450 | 1493 | 3.001330 | GCATAACACCGCAGAGTTCATAC | 59.999 | 47.826 | 0.00 | 0.00 | 0.00 | 2.39 |
1457 | 1500 | 4.742167 | CACCGCAGAGTTCATACTTCATAG | 59.258 | 45.833 | 0.00 | 0.00 | 33.84 | 2.23 |
1489 | 1532 | 4.305539 | TGACATCCATTCCAATGTGAGT | 57.694 | 40.909 | 0.00 | 0.00 | 36.28 | 3.41 |
1530 | 1574 | 4.728102 | TCTTACACGCGGCCGGTG | 62.728 | 66.667 | 32.08 | 32.08 | 39.22 | 4.94 |
1539 | 1583 | 2.036006 | GCGGCCGGTGACAATAACA | 61.036 | 57.895 | 29.38 | 0.00 | 0.00 | 2.41 |
1545 | 1589 | 4.444536 | GGCCGGTGACAATAACAGTATAA | 58.555 | 43.478 | 1.90 | 0.00 | 0.00 | 0.98 |
1546 | 1590 | 4.510340 | GGCCGGTGACAATAACAGTATAAG | 59.490 | 45.833 | 1.90 | 0.00 | 0.00 | 1.73 |
1547 | 1591 | 5.114081 | GCCGGTGACAATAACAGTATAAGT | 58.886 | 41.667 | 1.90 | 0.00 | 0.00 | 2.24 |
1548 | 1592 | 5.006358 | GCCGGTGACAATAACAGTATAAGTG | 59.994 | 44.000 | 1.90 | 0.00 | 0.00 | 3.16 |
1549 | 1593 | 6.103997 | CCGGTGACAATAACAGTATAAGTGT | 58.896 | 40.000 | 0.00 | 0.00 | 32.07 | 3.55 |
1550 | 1594 | 7.259882 | CCGGTGACAATAACAGTATAAGTGTA | 58.740 | 38.462 | 0.00 | 0.00 | 30.24 | 2.90 |
1551 | 1595 | 7.924412 | CCGGTGACAATAACAGTATAAGTGTAT | 59.076 | 37.037 | 0.00 | 0.00 | 30.24 | 2.29 |
1552 | 1596 | 9.955208 | CGGTGACAATAACAGTATAAGTGTATA | 57.045 | 33.333 | 0.00 | 0.00 | 30.24 | 1.47 |
1611 | 1660 | 1.068055 | CAGGTTTCCAACTGCATCTGC | 60.068 | 52.381 | 0.00 | 0.00 | 42.50 | 4.26 |
1632 | 1681 | 6.554982 | TCTGCCCATGTAGTAGAATGATTACT | 59.445 | 38.462 | 0.00 | 0.00 | 35.62 | 2.24 |
1936 | 1996 | 2.545946 | GAGGATTTGTTGCGCTATCTCC | 59.454 | 50.000 | 9.73 | 7.55 | 0.00 | 3.71 |
2037 | 2101 | 8.702163 | AATTTTGTTAGAACCAGTTTTCAGTG | 57.298 | 30.769 | 0.00 | 0.00 | 0.00 | 3.66 |
2125 | 2196 | 9.852091 | GCTGACTGAAAATCAAATCTAAATTCT | 57.148 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
2481 | 2553 | 1.547820 | TGTTTTGCTTGCCAGTTGACA | 59.452 | 42.857 | 0.00 | 0.00 | 0.00 | 3.58 |
2863 | 2937 | 6.399669 | CGCATACGTACTTGGACTAATATTGC | 60.400 | 42.308 | 0.00 | 0.00 | 33.53 | 3.56 |
2865 | 2939 | 5.252969 | ACGTACTTGGACTAATATTGCGA | 57.747 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
2869 | 2943 | 7.922278 | ACGTACTTGGACTAATATTGCGAAATA | 59.078 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2883 | 2957 | 5.682943 | TGCGAAATATAGGGTATGTTTGC | 57.317 | 39.130 | 0.00 | 0.00 | 30.97 | 3.68 |
3181 | 3293 | 1.544314 | GCTGATGCCCTGAGGATTACC | 60.544 | 57.143 | 0.00 | 0.00 | 33.47 | 2.85 |
3479 | 3591 | 9.614792 | ACTCAACTTAAGAGTTAAAATGAGTGT | 57.385 | 29.630 | 10.09 | 4.51 | 44.14 | 3.55 |
3495 | 3607 | 9.850628 | AAAATGAGTGTGATGTGATTTTATCAG | 57.149 | 29.630 | 0.00 | 0.00 | 40.53 | 2.90 |
3683 | 3797 | 9.613957 | GTCTAGCTCAAGGAAATTTTCTTAAAC | 57.386 | 33.333 | 11.48 | 4.27 | 0.00 | 2.01 |
3691 | 3806 | 7.786046 | AGGAAATTTTCTTAAACGGGGTAAT | 57.214 | 32.000 | 8.93 | 0.00 | 0.00 | 1.89 |
3832 | 3949 | 6.488683 | CAGAAAAGTGAACATACCCCAACTAA | 59.511 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
3875 | 3992 | 9.010029 | TGTTATGTAATCCCTTCTTTTCACTTC | 57.990 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4135 | 4324 | 2.746904 | TGCGGGAATTGATGTTGTAGTG | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
4704 | 4896 | 5.801531 | TTGAAGAGTGAGTAGTTTGCCTA | 57.198 | 39.130 | 0.00 | 0.00 | 0.00 | 3.93 |
4705 | 4897 | 5.801531 | TGAAGAGTGAGTAGTTTGCCTAA | 57.198 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
4732 | 4924 | 4.945543 | AGTCTTGCACATAATGAGCATGAA | 59.054 | 37.500 | 14.41 | 0.00 | 44.60 | 2.57 |
5340 | 5533 | 4.214971 | AGCTTGTTCTTGAACTGCACTATG | 59.785 | 41.667 | 22.47 | 6.42 | 0.00 | 2.23 |
5442 | 5635 | 2.607038 | CGCTGTTACGCTATATGAGGCA | 60.607 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
5910 | 6103 | 0.966920 | ACCGAGTCAACATTCTCCGT | 59.033 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5940 | 6133 | 2.906182 | TAGCTTCACTGGCGCCATCG | 62.906 | 60.000 | 32.87 | 23.77 | 39.07 | 3.84 |
6218 | 6411 | 1.078143 | GGGATCACTCTGTGGTGGC | 60.078 | 63.158 | 0.00 | 0.00 | 37.75 | 5.01 |
6273 | 6466 | 1.611965 | GGGAGGCCTTCTTCTGCAT | 59.388 | 57.895 | 11.94 | 0.00 | 0.00 | 3.96 |
6303 | 6496 | 4.649692 | ACTCAATGACAAGACATTCTGCT | 58.350 | 39.130 | 0.00 | 0.00 | 38.25 | 4.24 |
6513 | 6706 | 0.881600 | GCACGGTTGGTTACCTTCGT | 60.882 | 55.000 | 2.07 | 7.15 | 45.40 | 3.85 |
6543 | 6736 | 2.280628 | CTTCACAGGGTAAGCGAATCC | 58.719 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
6551 | 6744 | 2.354805 | GGGTAAGCGAATCCAGTGAACT | 60.355 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6582 | 6775 | 3.330701 | AGGAAAGCTTTGAGTGGATACCA | 59.669 | 43.478 | 18.30 | 0.00 | 0.00 | 3.25 |
6583 | 6776 | 4.018050 | AGGAAAGCTTTGAGTGGATACCAT | 60.018 | 41.667 | 18.30 | 0.00 | 35.28 | 3.55 |
6627 | 6820 | 2.798976 | TGTTCAATCCAAAGCTGTGC | 57.201 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
6651 | 6844 | 5.121768 | CGAAAGAATATGTGAAAGGGTCGTT | 59.878 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6652 | 6845 | 5.880054 | AAGAATATGTGAAAGGGTCGTTG | 57.120 | 39.130 | 0.00 | 0.00 | 0.00 | 4.10 |
6738 | 6931 | 2.025441 | TTGCGCGAACTTTGCACC | 59.975 | 55.556 | 12.10 | 0.00 | 38.55 | 5.01 |
6825 | 7018 | 2.086869 | CGCCAACTCCAACTCATGAAT | 58.913 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
6891 | 7084 | 2.214216 | CCAAGGAGGGACGTCACCA | 61.214 | 63.158 | 15.74 | 0.00 | 0.00 | 4.17 |
6915 | 7108 | 2.157738 | GAACATGTCAGGCTGAAGCTT | 58.842 | 47.619 | 20.62 | 8.16 | 41.70 | 3.74 |
7006 | 7212 | 9.180678 | CAAAGAAATGGAACTTGTGTTATGTAC | 57.819 | 33.333 | 0.00 | 0.00 | 36.39 | 2.90 |
7008 | 7214 | 8.324163 | AGAAATGGAACTTGTGTTATGTACTC | 57.676 | 34.615 | 0.00 | 0.00 | 36.39 | 2.59 |
7010 | 7216 | 4.901868 | TGGAACTTGTGTTATGTACTCCC | 58.098 | 43.478 | 0.00 | 0.00 | 36.39 | 4.30 |
7011 | 7217 | 4.595781 | TGGAACTTGTGTTATGTACTCCCT | 59.404 | 41.667 | 0.00 | 0.00 | 36.39 | 4.20 |
7014 | 7220 | 3.194968 | ACTTGTGTTATGTACTCCCTCCG | 59.805 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
7015 | 7221 | 2.811410 | TGTGTTATGTACTCCCTCCGT | 58.189 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
7016 | 7222 | 3.167485 | TGTGTTATGTACTCCCTCCGTT | 58.833 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
7017 | 7223 | 3.194116 | TGTGTTATGTACTCCCTCCGTTC | 59.806 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
7018 | 7224 | 2.762327 | TGTTATGTACTCCCTCCGTTCC | 59.238 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
7019 | 7225 | 3.029570 | GTTATGTACTCCCTCCGTTCCT | 58.970 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
7022 | 7228 | 3.173953 | TGTACTCCCTCCGTTCCTAAA | 57.826 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
7025 | 7231 | 5.461327 | TGTACTCCCTCCGTTCCTAAATAT | 58.539 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
7027 | 7233 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
7028 | 7234 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
7029 | 7235 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
7030 | 7236 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
7031 | 7237 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
7032 | 7238 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
7033 | 7239 | 6.602009 | CCCTCCGTTCCTAAATATTTGTCTTT | 59.398 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
7035 | 7241 | 7.553044 | CCTCCGTTCCTAAATATTTGTCTTTCT | 59.447 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
7036 | 7242 | 9.595823 | CTCCGTTCCTAAATATTTGTCTTTCTA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
7037 | 7243 | 9.595823 | TCCGTTCCTAAATATTTGTCTTTCTAG | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
7038 | 7244 | 9.595823 | CCGTTCCTAAATATTTGTCTTTCTAGA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
7057 | 7263 | 9.640963 | TTTCTAGAGATTTTAAGACTACAGTGC | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
7058 | 7264 | 8.349568 | TCTAGAGATTTTAAGACTACAGTGCA | 57.650 | 34.615 | 0.00 | 0.00 | 0.00 | 4.57 |
7059 | 7265 | 8.803235 | TCTAGAGATTTTAAGACTACAGTGCAA | 58.197 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
7062 | 7268 | 9.289782 | AGAGATTTTAAGACTACAGTGCAAAAT | 57.710 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
7063 | 7269 | 9.334693 | GAGATTTTAAGACTACAGTGCAAAATG | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
7065 | 7271 | 9.334693 | GATTTTAAGACTACAGTGCAAAATGAG | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
7067 | 7273 | 5.679734 | AAGACTACAGTGCAAAATGAGTG | 57.320 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
7068 | 7274 | 4.960938 | AGACTACAGTGCAAAATGAGTGA | 58.039 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
7069 | 7275 | 5.368145 | AGACTACAGTGCAAAATGAGTGAA | 58.632 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
7070 | 7276 | 6.000219 | AGACTACAGTGCAAAATGAGTGAAT | 59.000 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
7071 | 7277 | 6.148480 | AGACTACAGTGCAAAATGAGTGAATC | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
7072 | 7278 | 6.000219 | ACTACAGTGCAAAATGAGTGAATCT | 59.000 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
7073 | 7279 | 7.161404 | ACTACAGTGCAAAATGAGTGAATCTA | 58.839 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
7074 | 7280 | 6.246420 | ACAGTGCAAAATGAGTGAATCTAC | 57.754 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
7076 | 7282 | 6.082338 | CAGTGCAAAATGAGTGAATCTACAC | 58.918 | 40.000 | 0.00 | 0.00 | 40.60 | 2.90 |
7115 | 7321 | 9.788889 | CTATATACATCCGTATATGGTAGTCCA | 57.211 | 37.037 | 10.85 | 3.57 | 46.31 | 4.02 |
7132 | 7338 | 9.581289 | TGGTAGTCCATTTGAAATCTCTAAAAA | 57.419 | 29.630 | 0.00 | 0.00 | 39.03 | 1.94 |
7136 | 7342 | 9.354673 | AGTCCATTTGAAATCTCTAAAAAGACA | 57.645 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
7137 | 7343 | 9.965824 | GTCCATTTGAAATCTCTAAAAAGACAA | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
7164 | 7370 | 6.521151 | TTTAAGAACGGAGGGAGTAGTTAG | 57.479 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
7203 | 7409 | 2.754946 | AGCCCTAATTTTGTCGACGA | 57.245 | 45.000 | 11.62 | 6.16 | 0.00 | 4.20 |
7210 | 7416 | 4.862574 | CCTAATTTTGTCGACGACTCATCA | 59.137 | 41.667 | 26.86 | 5.28 | 33.15 | 3.07 |
7251 | 7457 | 2.203640 | TCCCACGCACTCACTCCT | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 |
7326 | 7532 | 6.467677 | TCCGAAAACTGATTCAGAAGATTCT | 58.532 | 36.000 | 20.33 | 0.00 | 38.25 | 2.40 |
7634 | 7840 | 6.811170 | CCTTCTCTAGATGACAGACACTTTTC | 59.189 | 42.308 | 0.00 | 0.00 | 0.00 | 2.29 |
7657 | 7863 | 1.831286 | CAGGGGATGAATGCCAGGC | 60.831 | 63.158 | 3.66 | 3.66 | 40.49 | 4.85 |
7715 | 7921 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
7717 | 7923 | 5.527582 | CCCTCCGTTCCTAAATATTTGTCTG | 59.472 | 44.000 | 11.05 | 0.00 | 0.00 | 3.51 |
7737 | 7943 | 9.950680 | TTGTCTGTTTAGAGATTTCAAATGAAC | 57.049 | 29.630 | 0.00 | 0.00 | 31.26 | 3.18 |
7748 | 7954 | 9.855361 | GAGATTTCAAATGAACTATCACATACG | 57.145 | 33.333 | 9.37 | 0.00 | 38.69 | 3.06 |
7798 | 8004 | 7.138692 | AGTGTAGATTCACTCATTTTGCTTC | 57.861 | 36.000 | 0.00 | 0.00 | 44.07 | 3.86 |
7800 | 8006 | 4.088823 | AGATTCACTCATTTTGCTTCGC | 57.911 | 40.909 | 0.00 | 0.00 | 0.00 | 4.70 |
7821 | 8027 | 5.238432 | TCGCATGTAGTCACTTGTTGAAATT | 59.762 | 36.000 | 0.00 | 0.00 | 35.39 | 1.82 |
7956 | 8162 | 3.837213 | AATTCAAAGTGACGGCATCAG | 57.163 | 42.857 | 0.00 | 0.00 | 38.28 | 2.90 |
7957 | 8163 | 0.874390 | TTCAAAGTGACGGCATCAGC | 59.126 | 50.000 | 0.00 | 0.00 | 38.28 | 4.26 |
7958 | 8164 | 0.035317 | TCAAAGTGACGGCATCAGCT | 59.965 | 50.000 | 0.00 | 0.00 | 38.28 | 4.24 |
7988 | 8194 | 3.978855 | GCAACCGATAAACACCAACTTTC | 59.021 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
8005 | 8211 | 5.333566 | ACTTTCTTTTGGAGGTAATGGGA | 57.666 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
8108 | 8318 | 2.089980 | GACCAAACATCATGCTCTGCT | 58.910 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
8129 | 8341 | 4.726416 | CTGATTTAGCGAGCATGTGTTTT | 58.274 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
8134 | 8346 | 0.387239 | GCGAGCATGTGTTTTCCACC | 60.387 | 55.000 | 0.00 | 0.00 | 43.85 | 4.61 |
8175 | 8387 | 0.183971 | TGTACCACCACACCAAAGGG | 59.816 | 55.000 | 0.00 | 0.00 | 41.29 | 3.95 |
8238 | 8450 | 4.517815 | CATTGGCCCATGCGGTGC | 62.518 | 66.667 | 3.48 | 0.00 | 38.85 | 5.01 |
8296 | 8508 | 4.207891 | TCTAATGGAAGTGGTTGAGCTC | 57.792 | 45.455 | 6.82 | 6.82 | 0.00 | 4.09 |
8298 | 8510 | 2.957402 | ATGGAAGTGGTTGAGCTCAA | 57.043 | 45.000 | 25.16 | 25.16 | 0.00 | 3.02 |
8399 | 8611 | 4.020662 | TGGTAAGCATTTCCATTTTCCCAC | 60.021 | 41.667 | 0.00 | 0.00 | 40.84 | 4.61 |
8446 | 8658 | 3.338249 | TGGCAGAGTGAAAATCAGTAGC | 58.662 | 45.455 | 0.00 | 4.43 | 30.01 | 3.58 |
8476 | 8689 | 1.824852 | CCACTCTAAAACCCATTGCCC | 59.175 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
8479 | 8692 | 2.897326 | ACTCTAAAACCCATTGCCCAAC | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
8491 | 8704 | 1.372872 | GCCCAACGTGCATGAAACC | 60.373 | 57.895 | 14.17 | 0.00 | 0.00 | 3.27 |
8622 | 8835 | 4.991776 | TGACAATCATACCTTGTGGGAAA | 58.008 | 39.130 | 0.00 | 0.00 | 36.98 | 3.13 |
8683 | 8896 | 6.635021 | AGACATAGGATTACCCATAGTTCCT | 58.365 | 40.000 | 0.00 | 0.00 | 39.98 | 3.36 |
8684 | 8897 | 6.726764 | AGACATAGGATTACCCATAGTTCCTC | 59.273 | 42.308 | 0.00 | 0.00 | 37.89 | 3.71 |
8686 | 8899 | 4.295905 | AGGATTACCCATAGTTCCTCCA | 57.704 | 45.455 | 0.00 | 0.00 | 37.41 | 3.86 |
8687 | 8900 | 3.974642 | AGGATTACCCATAGTTCCTCCAC | 59.025 | 47.826 | 0.00 | 0.00 | 37.41 | 4.02 |
8688 | 8901 | 3.974642 | GGATTACCCATAGTTCCTCCACT | 59.025 | 47.826 | 0.00 | 0.00 | 34.14 | 4.00 |
8690 | 8903 | 5.454897 | GGATTACCCATAGTTCCTCCACTTC | 60.455 | 48.000 | 0.00 | 0.00 | 34.14 | 3.01 |
8691 | 8904 | 3.207044 | ACCCATAGTTCCTCCACTTCT | 57.793 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
114 | 121 | 2.292918 | TGGGACTTCCTGCTATGGTAGT | 60.293 | 50.000 | 0.00 | 3.77 | 39.83 | 2.73 |
171 | 179 | 6.396829 | AAAAGCTGATATTTGTATGGAGCC | 57.603 | 37.500 | 0.00 | 0.00 | 0.00 | 4.70 |
376 | 387 | 1.699634 | TGAAGGAGTCAGGGTTTCCAG | 59.300 | 52.381 | 0.00 | 0.00 | 33.32 | 3.86 |
377 | 388 | 1.814429 | TGAAGGAGTCAGGGTTTCCA | 58.186 | 50.000 | 0.00 | 0.00 | 33.32 | 3.53 |
378 | 389 | 2.951229 | TTGAAGGAGTCAGGGTTTCC | 57.049 | 50.000 | 0.00 | 0.00 | 37.61 | 3.13 |
379 | 390 | 3.756117 | ACATTGAAGGAGTCAGGGTTTC | 58.244 | 45.455 | 0.00 | 0.00 | 37.61 | 2.78 |
382 | 393 | 3.306780 | CGTTACATTGAAGGAGTCAGGGT | 60.307 | 47.826 | 0.00 | 0.00 | 37.61 | 4.34 |
400 | 411 | 6.127101 | TGAATCATAGAGAGGAGGTTCGTTA | 58.873 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
401 | 412 | 4.956700 | TGAATCATAGAGAGGAGGTTCGTT | 59.043 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
514 | 525 | 4.718940 | AGTTCAACAACCAAGAAACAGG | 57.281 | 40.909 | 0.00 | 0.00 | 32.22 | 4.00 |
535 | 546 | 9.166173 | CATTCAATCAGTCAAGTATAAGGTCAA | 57.834 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
630 | 642 | 5.912149 | AAGCTTATGATAGGGTGGAATGA | 57.088 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
709 | 725 | 7.747155 | TGGCTTATGAGAGTCTACATACTAC | 57.253 | 40.000 | 10.16 | 6.07 | 0.00 | 2.73 |
762 | 778 | 8.539544 | CAGTTATTCCCAACCCATATTCTTTTT | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
763 | 779 | 7.125659 | CCAGTTATTCCCAACCCATATTCTTTT | 59.874 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
764 | 780 | 6.611236 | CCAGTTATTCCCAACCCATATTCTTT | 59.389 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
765 | 781 | 6.068498 | TCCAGTTATTCCCAACCCATATTCTT | 60.068 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
766 | 782 | 5.435041 | TCCAGTTATTCCCAACCCATATTCT | 59.565 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
767 | 783 | 5.701224 | TCCAGTTATTCCCAACCCATATTC | 58.299 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
768 | 784 | 5.742562 | TCCAGTTATTCCCAACCCATATT | 57.257 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
769 | 785 | 5.375354 | TGATCCAGTTATTCCCAACCCATAT | 59.625 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
770 | 786 | 4.729370 | TGATCCAGTTATTCCCAACCCATA | 59.271 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
811 | 827 | 2.237143 | TCTAATCGATCCATGGCCATCC | 59.763 | 50.000 | 17.61 | 4.56 | 0.00 | 3.51 |
812 | 828 | 3.529533 | CTCTAATCGATCCATGGCCATC | 58.470 | 50.000 | 17.61 | 4.30 | 0.00 | 3.51 |
813 | 829 | 2.238144 | CCTCTAATCGATCCATGGCCAT | 59.762 | 50.000 | 14.09 | 14.09 | 0.00 | 4.40 |
814 | 830 | 1.625315 | CCTCTAATCGATCCATGGCCA | 59.375 | 52.381 | 8.56 | 8.56 | 0.00 | 5.36 |
815 | 831 | 1.902508 | TCCTCTAATCGATCCATGGCC | 59.097 | 52.381 | 6.96 | 0.00 | 0.00 | 5.36 |
816 | 832 | 2.093764 | CCTCCTCTAATCGATCCATGGC | 60.094 | 54.545 | 6.96 | 0.00 | 0.00 | 4.40 |
817 | 833 | 3.435275 | TCCTCCTCTAATCGATCCATGG | 58.565 | 50.000 | 4.97 | 4.97 | 0.00 | 3.66 |
818 | 834 | 4.085733 | ACTCCTCCTCTAATCGATCCATG | 58.914 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
819 | 835 | 4.340617 | GACTCCTCCTCTAATCGATCCAT | 58.659 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
820 | 836 | 3.498841 | GGACTCCTCCTCTAATCGATCCA | 60.499 | 52.174 | 0.00 | 0.00 | 33.07 | 3.41 |
833 | 849 | 3.202595 | TCTTCCTACTACTGGACTCCTCC | 59.797 | 52.174 | 0.00 | 0.00 | 37.04 | 4.30 |
834 | 850 | 4.457466 | CTCTTCCTACTACTGGACTCCTC | 58.543 | 52.174 | 0.00 | 0.00 | 32.65 | 3.71 |
837 | 853 | 4.506937 | TCCTCTTCCTACTACTGGACTC | 57.493 | 50.000 | 0.00 | 0.00 | 32.65 | 3.36 |
840 | 856 | 4.669866 | TGTTCCTCTTCCTACTACTGGA | 57.330 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
841 | 857 | 4.773149 | AGTTGTTCCTCTTCCTACTACTGG | 59.227 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
842 | 858 | 5.986501 | AGTTGTTCCTCTTCCTACTACTG | 57.013 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
843 | 859 | 6.997942 | AAAGTTGTTCCTCTTCCTACTACT | 57.002 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
845 | 861 | 6.766429 | GGAAAAGTTGTTCCTCTTCCTACTA | 58.234 | 40.000 | 8.66 | 0.00 | 43.32 | 1.82 |
917 | 946 | 1.202952 | AGCGACTCCGATCCTAATCCT | 60.203 | 52.381 | 0.00 | 0.00 | 38.22 | 3.24 |
978 | 1007 | 2.180862 | CGCTCGATCTCGTCCTCCA | 61.181 | 63.158 | 0.00 | 0.00 | 40.80 | 3.86 |
1029 | 1058 | 1.134159 | GCCTTCACCATCATCTGCTCT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
1139 | 1179 | 1.551779 | CGTTAATCGGCGTGCGTAG | 59.448 | 57.895 | 6.85 | 0.00 | 35.71 | 3.51 |
1140 | 1180 | 2.507193 | GCGTTAATCGGCGTGCGTA | 61.507 | 57.895 | 6.85 | 0.00 | 40.26 | 4.42 |
1141 | 1181 | 3.845472 | GCGTTAATCGGCGTGCGT | 61.845 | 61.111 | 6.85 | 0.00 | 40.26 | 5.24 |
1142 | 1182 | 4.894772 | CGCGTTAATCGGCGTGCG | 62.895 | 66.667 | 6.85 | 10.54 | 40.26 | 5.34 |
1143 | 1183 | 4.568876 | CCGCGTTAATCGGCGTGC | 62.569 | 66.667 | 6.85 | 1.96 | 40.46 | 5.34 |
1144 | 1184 | 2.142418 | GATCCGCGTTAATCGGCGTG | 62.142 | 60.000 | 6.85 | 2.67 | 46.05 | 5.34 |
1145 | 1185 | 1.947642 | GATCCGCGTTAATCGGCGT | 60.948 | 57.895 | 6.85 | 5.72 | 46.05 | 5.68 |
1146 | 1186 | 2.844146 | GATCCGCGTTAATCGGCG | 59.156 | 61.111 | 4.92 | 0.00 | 46.05 | 6.46 |
1147 | 1187 | 1.007336 | ATCGATCCGCGTTAATCGGC | 61.007 | 55.000 | 25.40 | 1.09 | 46.05 | 5.54 |
1149 | 1189 | 1.965083 | AGATCGATCCGCGTTAATCG | 58.035 | 50.000 | 21.66 | 22.18 | 44.66 | 3.34 |
1231 | 1272 | 2.362375 | TCGCCCCCATTTCTTGGC | 60.362 | 61.111 | 0.00 | 0.00 | 44.97 | 4.52 |
1232 | 1273 | 2.406616 | CGTCGCCCCCATTTCTTGG | 61.407 | 63.158 | 0.00 | 0.00 | 46.00 | 3.61 |
1233 | 1274 | 3.051392 | GCGTCGCCCCCATTTCTTG | 62.051 | 63.158 | 5.75 | 0.00 | 0.00 | 3.02 |
1234 | 1275 | 2.750237 | GCGTCGCCCCCATTTCTT | 60.750 | 61.111 | 5.75 | 0.00 | 0.00 | 2.52 |
1235 | 1276 | 4.796495 | GGCGTCGCCCCCATTTCT | 62.796 | 66.667 | 26.23 | 0.00 | 44.06 | 2.52 |
1245 | 1286 | 2.709475 | GGTGATGAATGGCGTCGC | 59.291 | 61.111 | 9.22 | 9.22 | 41.31 | 5.19 |
1246 | 1287 | 0.744414 | AAGGGTGATGAATGGCGTCG | 60.744 | 55.000 | 0.00 | 0.00 | 35.18 | 5.12 |
1247 | 1288 | 1.017387 | GAAGGGTGATGAATGGCGTC | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1250 | 1291 | 5.009410 | CAGATTAAGAAGGGTGATGAATGGC | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1261 | 1302 | 3.282885 | GGAACAGGCAGATTAAGAAGGG | 58.717 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1301 | 1342 | 2.417553 | GCGCGTGCTTGCTTTAACG | 61.418 | 57.895 | 15.02 | 0.00 | 38.39 | 3.18 |
1318 | 1359 | 2.153945 | CATTCCAACATGCGTGCGC | 61.154 | 57.895 | 5.64 | 9.85 | 42.35 | 6.09 |
1319 | 1360 | 0.387112 | AACATTCCAACATGCGTGCG | 60.387 | 50.000 | 5.64 | 0.00 | 0.00 | 5.34 |
1320 | 1361 | 1.062258 | CAACATTCCAACATGCGTGC | 58.938 | 50.000 | 5.64 | 0.00 | 0.00 | 5.34 |
1321 | 1362 | 1.000385 | ACCAACATTCCAACATGCGTG | 60.000 | 47.619 | 3.82 | 3.82 | 0.00 | 5.34 |
1337 | 1378 | 2.039084 | AGTTTGTGTTGCCCAAAACCAA | 59.961 | 40.909 | 0.00 | 0.00 | 33.89 | 3.67 |
1344 | 1385 | 1.550327 | TTGACAGTTTGTGTTGCCCA | 58.450 | 45.000 | 0.00 | 0.00 | 40.56 | 5.36 |
1347 | 1388 | 1.860326 | GGCATTGACAGTTTGTGTTGC | 59.140 | 47.619 | 0.00 | 0.00 | 40.56 | 4.17 |
1348 | 1389 | 2.159128 | TGGGCATTGACAGTTTGTGTTG | 60.159 | 45.455 | 0.00 | 0.00 | 40.56 | 3.33 |
1381 | 1424 | 3.264104 | GCAAACCATCAACATGAATGGG | 58.736 | 45.455 | 21.91 | 11.61 | 38.45 | 4.00 |
1425 | 1468 | 0.608130 | ACTCTGCGGTGTTATGCTGA | 59.392 | 50.000 | 0.00 | 0.00 | 37.47 | 4.26 |
1449 | 1492 | 9.167311 | GGATGTCATTTTTACAGACTATGAAGT | 57.833 | 33.333 | 0.00 | 0.00 | 39.21 | 3.01 |
1450 | 1493 | 9.166173 | TGGATGTCATTTTTACAGACTATGAAG | 57.834 | 33.333 | 0.00 | 0.00 | 33.56 | 3.02 |
1457 | 1500 | 7.156876 | TGGAATGGATGTCATTTTTACAGAC | 57.843 | 36.000 | 0.00 | 0.00 | 45.36 | 3.51 |
1470 | 1513 | 4.267536 | CAGACTCACATTGGAATGGATGT | 58.732 | 43.478 | 4.45 | 0.03 | 40.70 | 3.06 |
1489 | 1532 | 4.081917 | TGTGTGATAGTACGATTTGCCAGA | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1547 | 1591 | 3.552294 | CGTGTGTGTGTGTGTGTTATACA | 59.448 | 43.478 | 0.00 | 0.00 | 36.82 | 2.29 |
1548 | 1592 | 3.552699 | ACGTGTGTGTGTGTGTGTTATAC | 59.447 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
1549 | 1593 | 3.552294 | CACGTGTGTGTGTGTGTGTTATA | 59.448 | 43.478 | 7.58 | 0.00 | 41.34 | 0.98 |
1550 | 1594 | 2.350192 | CACGTGTGTGTGTGTGTGTTAT | 59.650 | 45.455 | 7.58 | 0.00 | 41.34 | 1.89 |
1551 | 1595 | 1.727335 | CACGTGTGTGTGTGTGTGTTA | 59.273 | 47.619 | 7.58 | 0.00 | 41.34 | 2.41 |
1552 | 1596 | 0.515127 | CACGTGTGTGTGTGTGTGTT | 59.485 | 50.000 | 7.58 | 0.00 | 41.34 | 3.32 |
1553 | 1597 | 2.158300 | CACGTGTGTGTGTGTGTGT | 58.842 | 52.632 | 7.58 | 0.00 | 41.34 | 3.72 |
1611 | 1660 | 8.830580 | CACAAAGTAATCATTCTACTACATGGG | 58.169 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
1632 | 1681 | 7.773864 | TGTTCGTAGATGTAGAAAACACAAA | 57.226 | 32.000 | 0.00 | 0.00 | 42.09 | 2.83 |
1705 | 1765 | 6.572898 | CGTTACAAGTGTTAGATAGTTCCCCA | 60.573 | 42.308 | 0.00 | 0.00 | 0.00 | 4.96 |
1936 | 1996 | 4.568359 | ACAACATACTGCTAGATTTCTGCG | 59.432 | 41.667 | 0.00 | 0.00 | 0.00 | 5.18 |
2015 | 2079 | 5.712917 | ACCACTGAAAACTGGTTCTAACAAA | 59.287 | 36.000 | 0.00 | 0.00 | 37.51 | 2.83 |
2037 | 2101 | 9.573133 | CAAAAGTGTGGAAGATGATAATAAACC | 57.427 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
2125 | 2196 | 8.257602 | AGAAGTTTAAAAAGGATTAGGCCAAA | 57.742 | 30.769 | 5.01 | 0.00 | 0.00 | 3.28 |
2127 | 2198 | 7.238710 | AGAGAAGTTTAAAAAGGATTAGGCCA | 58.761 | 34.615 | 5.01 | 0.00 | 0.00 | 5.36 |
2136 | 2207 | 5.753438 | GCAACCCAAGAGAAGTTTAAAAAGG | 59.247 | 40.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2410 | 2481 | 7.441017 | TGCTTTGCCTTTTATTGATACAAGTT | 58.559 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
2481 | 2553 | 0.744874 | GCTGCTGGACATGAATGCAT | 59.255 | 50.000 | 0.00 | 0.00 | 33.02 | 3.96 |
2555 | 2627 | 6.604735 | AGAAATGACAGTTCTGTGTTGTAC | 57.395 | 37.500 | 16.85 | 0.00 | 34.03 | 2.90 |
2612 | 2684 | 4.793216 | GCGATAAACCAAAACTATGCAGTG | 59.207 | 41.667 | 0.00 | 0.00 | 34.36 | 3.66 |
2763 | 2837 | 5.049405 | CCACTGAACGAGCAAACTCTTTTAT | 60.049 | 40.000 | 0.00 | 0.00 | 41.09 | 1.40 |
2764 | 2838 | 4.272504 | CCACTGAACGAGCAAACTCTTTTA | 59.727 | 41.667 | 0.00 | 0.00 | 41.09 | 1.52 |
2937 | 3041 | 5.707242 | TGCAATACACCGGTTGAAAAATA | 57.293 | 34.783 | 2.97 | 0.00 | 0.00 | 1.40 |
2938 | 3042 | 4.592485 | TGCAATACACCGGTTGAAAAAT | 57.408 | 36.364 | 2.97 | 0.00 | 0.00 | 1.82 |
2939 | 3043 | 4.592485 | ATGCAATACACCGGTTGAAAAA | 57.408 | 36.364 | 2.97 | 0.00 | 0.00 | 1.94 |
3181 | 3293 | 3.619233 | AATTCGTTTCTTCCAACACCG | 57.381 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
3251 | 3363 | 0.676782 | GTTCGGGGACACATGAAGGG | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3531 | 3643 | 4.771590 | ATGTGGATGACATGTCACAAAC | 57.228 | 40.909 | 30.09 | 24.76 | 44.12 | 2.93 |
3683 | 3797 | 1.369625 | GAGTGACAGCAATTACCCCG | 58.630 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
3832 | 3949 | 3.840124 | AACAAGAGGAAAAGAGGACGT | 57.160 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
3875 | 3992 | 7.210174 | TCCACATTATCTTCTGAAATACCGAG | 58.790 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
4116 | 4305 | 5.163794 | GGTAACACTACAACATCAATTCCCG | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4704 | 4896 | 5.939883 | TGCTCATTATGTGCAAGACTAGTTT | 59.060 | 36.000 | 17.88 | 0.00 | 42.88 | 2.66 |
4705 | 4897 | 5.491070 | TGCTCATTATGTGCAAGACTAGTT | 58.509 | 37.500 | 17.88 | 0.00 | 42.88 | 2.24 |
4947 | 5139 | 0.031917 | TTACGGCCCATCCCAGTCTA | 60.032 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5340 | 5533 | 5.841957 | ATGGAAGGTTGCATCATAAAGTC | 57.158 | 39.130 | 0.00 | 0.00 | 33.77 | 3.01 |
5442 | 5635 | 3.092301 | GCAAGAATAGCCCAGTTTTCCT | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
5910 | 6103 | 1.273606 | AGTGAAGCTAAGCTCTCGCAA | 59.726 | 47.619 | 0.00 | 0.00 | 38.25 | 4.85 |
5940 | 6133 | 5.520649 | CCTAAGAAGTAATCTTTCCAGCGTC | 59.479 | 44.000 | 0.00 | 0.00 | 46.39 | 5.19 |
6174 | 6367 | 3.627577 | ACCATATTAGTGCCTTTTCGCAG | 59.372 | 43.478 | 0.00 | 0.00 | 40.05 | 5.18 |
6218 | 6411 | 4.891992 | TCAAAGTTTCCTCCTAGTCCAG | 57.108 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
6273 | 6466 | 5.924356 | TGTCTTGTCATTGAGTTCAGGTAA | 58.076 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
6303 | 6496 | 2.503331 | CCAAGTGGTTGCACTATCACA | 58.497 | 47.619 | 4.67 | 0.00 | 34.56 | 3.58 |
6321 | 6514 | 4.314522 | TTCATCAAGGTCCTTTATGCCA | 57.685 | 40.909 | 17.72 | 7.03 | 28.60 | 4.92 |
6513 | 6706 | 3.185880 | ACCCTGTGAAGCCTTACTAGA | 57.814 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
6543 | 6736 | 4.342862 | TTCCTTCTCTGGAAGTTCACTG | 57.657 | 45.455 | 5.01 | 0.00 | 45.36 | 3.66 |
6551 | 6744 | 4.141390 | ACTCAAAGCTTTCCTTCTCTGGAA | 60.141 | 41.667 | 9.23 | 0.00 | 43.63 | 3.53 |
6567 | 6760 | 6.349611 | CCAAGTTCAATGGTATCCACTCAAAG | 60.350 | 42.308 | 0.00 | 0.00 | 35.80 | 2.77 |
6569 | 6762 | 5.009631 | CCAAGTTCAATGGTATCCACTCAA | 58.990 | 41.667 | 0.00 | 0.00 | 35.80 | 3.02 |
6627 | 6820 | 4.630069 | ACGACCCTTTCACATATTCTTTCG | 59.370 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
6651 | 6844 | 7.825761 | TCATCTTTCTGAAGCATATTTGAGTCA | 59.174 | 33.333 | 0.00 | 0.00 | 32.75 | 3.41 |
6652 | 6845 | 8.206325 | TCATCTTTCTGAAGCATATTTGAGTC | 57.794 | 34.615 | 0.00 | 0.00 | 32.75 | 3.36 |
6738 | 6931 | 1.005394 | ACCGGTTGCTTGGTACTCG | 60.005 | 57.895 | 0.00 | 0.00 | 36.50 | 4.18 |
6825 | 7018 | 4.162320 | GGACTCCATCTTCCACTCACAATA | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
6878 | 7071 | 1.469335 | TTCACCTGGTGACGTCCCTC | 61.469 | 60.000 | 28.35 | 3.54 | 42.60 | 4.30 |
6891 | 7084 | 1.059098 | TCAGCCTGACATGTTCACCT | 58.941 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
6915 | 7108 | 1.301716 | GCACTTCTGCCGTCTTCCA | 60.302 | 57.895 | 0.00 | 0.00 | 37.45 | 3.53 |
7006 | 7212 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
7008 | 7214 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
7010 | 7216 | 8.494016 | AGAAAGACAAATATTTAGGAACGGAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
7011 | 7217 | 9.595823 | CTAGAAAGACAAATATTTAGGAACGGA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
7031 | 7237 | 9.640963 | GCACTGTAGTCTTAAAATCTCTAGAAA | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
7032 | 7238 | 8.803235 | TGCACTGTAGTCTTAAAATCTCTAGAA | 58.197 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
7033 | 7239 | 8.349568 | TGCACTGTAGTCTTAAAATCTCTAGA | 57.650 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
7035 | 7241 | 9.772973 | TTTTGCACTGTAGTCTTAAAATCTCTA | 57.227 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
7036 | 7242 | 8.677148 | TTTTGCACTGTAGTCTTAAAATCTCT | 57.323 | 30.769 | 0.00 | 0.00 | 0.00 | 3.10 |
7037 | 7243 | 9.334693 | CATTTTGCACTGTAGTCTTAAAATCTC | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
7038 | 7244 | 9.066892 | TCATTTTGCACTGTAGTCTTAAAATCT | 57.933 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
7039 | 7245 | 9.334693 | CTCATTTTGCACTGTAGTCTTAAAATC | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
7040 | 7246 | 8.850156 | ACTCATTTTGCACTGTAGTCTTAAAAT | 58.150 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
7041 | 7247 | 8.128582 | CACTCATTTTGCACTGTAGTCTTAAAA | 58.871 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
7043 | 7249 | 6.989759 | TCACTCATTTTGCACTGTAGTCTTAA | 59.010 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
7044 | 7250 | 6.521162 | TCACTCATTTTGCACTGTAGTCTTA | 58.479 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
7045 | 7251 | 5.368145 | TCACTCATTTTGCACTGTAGTCTT | 58.632 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
7046 | 7252 | 4.960938 | TCACTCATTTTGCACTGTAGTCT | 58.039 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
7047 | 7253 | 5.673337 | TTCACTCATTTTGCACTGTAGTC | 57.327 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
7048 | 7254 | 6.000219 | AGATTCACTCATTTTGCACTGTAGT | 59.000 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
7049 | 7255 | 6.492007 | AGATTCACTCATTTTGCACTGTAG | 57.508 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
7051 | 7257 | 5.764686 | TGTAGATTCACTCATTTTGCACTGT | 59.235 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
7052 | 7258 | 6.072838 | AGTGTAGATTCACTCATTTTGCACTG | 60.073 | 38.462 | 0.00 | 0.00 | 44.07 | 3.66 |
7053 | 7259 | 6.000219 | AGTGTAGATTCACTCATTTTGCACT | 59.000 | 36.000 | 0.00 | 0.00 | 44.07 | 4.40 |
7054 | 7260 | 6.246420 | AGTGTAGATTCACTCATTTTGCAC | 57.754 | 37.500 | 0.00 | 0.00 | 44.07 | 4.57 |
7110 | 7316 | 9.354673 | TGTCTTTTTAGAGATTTCAAATGGACT | 57.645 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
7111 | 7317 | 9.965824 | TTGTCTTTTTAGAGATTTCAAATGGAC | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
7128 | 7334 | 9.908152 | CCTCCGTTCTTAAATATTTGTCTTTTT | 57.092 | 29.630 | 11.05 | 0.00 | 0.00 | 1.94 |
7129 | 7335 | 8.520351 | CCCTCCGTTCTTAAATATTTGTCTTTT | 58.480 | 33.333 | 11.05 | 0.00 | 0.00 | 2.27 |
7130 | 7336 | 7.886446 | TCCCTCCGTTCTTAAATATTTGTCTTT | 59.114 | 33.333 | 11.05 | 0.00 | 0.00 | 2.52 |
7131 | 7337 | 7.399634 | TCCCTCCGTTCTTAAATATTTGTCTT | 58.600 | 34.615 | 11.05 | 0.00 | 0.00 | 3.01 |
7132 | 7338 | 6.954232 | TCCCTCCGTTCTTAAATATTTGTCT | 58.046 | 36.000 | 11.05 | 0.00 | 0.00 | 3.41 |
7133 | 7339 | 6.822170 | ACTCCCTCCGTTCTTAAATATTTGTC | 59.178 | 38.462 | 11.05 | 0.00 | 0.00 | 3.18 |
7134 | 7340 | 6.718294 | ACTCCCTCCGTTCTTAAATATTTGT | 58.282 | 36.000 | 11.05 | 0.00 | 0.00 | 2.83 |
7135 | 7341 | 7.985752 | ACTACTCCCTCCGTTCTTAAATATTTG | 59.014 | 37.037 | 11.05 | 0.00 | 0.00 | 2.32 |
7136 | 7342 | 8.087303 | ACTACTCCCTCCGTTCTTAAATATTT | 57.913 | 34.615 | 5.89 | 5.89 | 0.00 | 1.40 |
7137 | 7343 | 7.672122 | ACTACTCCCTCCGTTCTTAAATATT | 57.328 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
7138 | 7344 | 7.672122 | AACTACTCCCTCCGTTCTTAAATAT | 57.328 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
7139 | 7345 | 7.836183 | ACTAACTACTCCCTCCGTTCTTAAATA | 59.164 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
7140 | 7346 | 6.666980 | ACTAACTACTCCCTCCGTTCTTAAAT | 59.333 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
7141 | 7347 | 6.012745 | ACTAACTACTCCCTCCGTTCTTAAA | 58.987 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
7142 | 7348 | 5.574188 | ACTAACTACTCCCTCCGTTCTTAA | 58.426 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
7143 | 7349 | 5.184892 | ACTAACTACTCCCTCCGTTCTTA | 57.815 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
7144 | 7350 | 4.044946 | ACTAACTACTCCCTCCGTTCTT | 57.955 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
7145 | 7351 | 3.735720 | ACTAACTACTCCCTCCGTTCT | 57.264 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
7146 | 7352 | 5.183904 | TGTTAACTAACTACTCCCTCCGTTC | 59.816 | 44.000 | 7.22 | 0.00 | 37.12 | 3.95 |
7147 | 7353 | 5.079643 | TGTTAACTAACTACTCCCTCCGTT | 58.920 | 41.667 | 7.22 | 0.00 | 37.12 | 4.44 |
7148 | 7354 | 4.666512 | TGTTAACTAACTACTCCCTCCGT | 58.333 | 43.478 | 7.22 | 0.00 | 37.12 | 4.69 |
7149 | 7355 | 5.649782 | TTGTTAACTAACTACTCCCTCCG | 57.350 | 43.478 | 7.22 | 0.00 | 37.12 | 4.63 |
7150 | 7356 | 5.816258 | GCATTGTTAACTAACTACTCCCTCC | 59.184 | 44.000 | 7.22 | 0.00 | 37.12 | 4.30 |
7203 | 7409 | 2.865119 | TCAAGCACATGGTGATGAGT | 57.135 | 45.000 | 0.00 | 0.00 | 35.23 | 3.41 |
7210 | 7416 | 4.885907 | CCTATCAGAAATCAAGCACATGGT | 59.114 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
7251 | 7457 | 2.831526 | TCTTGTAGCAGCCTCATACACA | 59.168 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
7452 | 7658 | 0.461135 | ATTTCATGGCCAATGACGCC | 59.539 | 50.000 | 10.96 | 0.00 | 45.17 | 5.68 |
7657 | 7863 | 2.349590 | TGATTTGTGCATGGAGACTCG | 58.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
7798 | 8004 | 4.466567 | TTTCAACAAGTGACTACATGCG | 57.533 | 40.909 | 0.00 | 0.00 | 35.39 | 4.73 |
7829 | 8035 | 6.659824 | TCCCTCTGTTCCTAAATATTTGTCC | 58.340 | 40.000 | 11.05 | 0.00 | 0.00 | 4.02 |
7847 | 8053 | 4.551671 | ACATGCAATCTACTACTCCCTCT | 58.448 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
7988 | 8194 | 3.445096 | CAGCTTCCCATTACCTCCAAAAG | 59.555 | 47.826 | 0.00 | 0.00 | 0.00 | 2.27 |
8108 | 8318 | 4.379394 | GGAAAACACATGCTCGCTAAATCA | 60.379 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
8129 | 8341 | 3.256960 | GGGAAGGGTGCAGGTGGA | 61.257 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
8238 | 8450 | 4.463891 | AGTCAAGCCAAAAATGGTATCTGG | 59.536 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
8240 | 8452 | 5.774690 | TGAAGTCAAGCCAAAAATGGTATCT | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
8399 | 8611 | 5.456548 | TGGCTTTGGCAATATGACATATG | 57.543 | 39.130 | 8.73 | 0.00 | 33.90 | 1.78 |
8446 | 8658 | 7.461182 | TGGGTTTTAGAGTGGATAACAAATG | 57.539 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
8476 | 8689 | 4.606961 | ACTAAAAGGTTTCATGCACGTTG | 58.393 | 39.130 | 0.00 | 0.00 | 0.00 | 4.10 |
8491 | 8704 | 9.657419 | ATTATGGAATTTGCCTGAAACTAAAAG | 57.343 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
8569 | 8782 | 6.564328 | CAATAGGGAGGAAACTAAACATTGC | 58.436 | 40.000 | 0.00 | 0.00 | 44.43 | 3.56 |
8622 | 8835 | 4.248859 | CGTTCAAGTCCAAGTGAGATCAT | 58.751 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.