Multiple sequence alignment - TraesCS1B01G238400

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G238400 chr1B 100.000 6964 0 0 1 6964 426503593 426496630 0.000000e+00 12861.0
1 TraesCS1B01G238400 chr1B 91.165 2241 141 27 3968 6190 133114024 133111823 0.000000e+00 2988.0
2 TraesCS1B01G238400 chr1B 80.956 1318 204 30 4039 5322 133127048 133125744 0.000000e+00 1000.0
3 TraesCS1B01G238400 chr1B 87.179 585 58 14 5448 6027 133125528 133124956 0.000000e+00 649.0
4 TraesCS1B01G238400 chr1B 90.167 478 44 2 991 1468 133129039 133128565 2.760000e-173 619.0
5 TraesCS1B01G238400 chr1B 93.004 243 14 3 3692 3934 133114404 133114165 1.110000e-92 351.0
6 TraesCS1B01G238400 chr1B 88.136 236 12 8 6741 6964 398962051 398962282 4.140000e-67 267.0
7 TraesCS1B01G238400 chr1B 82.791 215 22 7 1860 2062 133114810 133114599 2.000000e-40 178.0
8 TraesCS1B01G238400 chr1B 81.633 245 12 9 6206 6428 133111854 133111621 9.290000e-39 172.0
9 TraesCS1B01G238400 chr1B 93.333 45 3 0 28 72 360806158 360806202 4.510000e-07 67.6
10 TraesCS1B01G238400 chr1B 97.368 38 1 0 1817 1854 133114831 133114794 1.620000e-06 65.8
11 TraesCS1B01G238400 chr1B 100.000 32 0 0 3918 3949 595180793 595180824 7.540000e-05 60.2
12 TraesCS1B01G238400 chr7A 90.967 2646 164 27 3535 6142 627048313 627045705 0.000000e+00 3493.0
13 TraesCS1B01G238400 chr7A 97.488 1473 30 4 2060 3525 709680097 709681569 0.000000e+00 2508.0
14 TraesCS1B01G238400 chr7A 94.986 1476 67 6 2055 3526 686323856 686325328 0.000000e+00 2309.0
15 TraesCS1B01G238400 chr7A 90.496 1231 60 15 3535 4734 627010544 627009340 0.000000e+00 1572.0
16 TraesCS1B01G238400 chr7A 92.385 998 68 5 4786 5781 580506029 580505038 0.000000e+00 1415.0
17 TraesCS1B01G238400 chr7A 87.039 1003 88 21 5024 6017 628387369 628386400 0.000000e+00 1094.0
18 TraesCS1B01G238400 chr7A 89.744 780 68 7 5367 6142 627120664 627119893 0.000000e+00 987.0
19 TraesCS1B01G238400 chr7A 80.537 1341 210 37 4039 5343 627236524 627235199 0.000000e+00 983.0
20 TraesCS1B01G238400 chr7A 89.789 617 39 4 916 1528 627011630 627011034 0.000000e+00 769.0
21 TraesCS1B01G238400 chr7A 89.789 617 39 4 916 1528 627049399 627048803 0.000000e+00 769.0
22 TraesCS1B01G238400 chr7A 86.449 583 61 15 5448 6020 627235004 627234430 2.130000e-174 623.0
23 TraesCS1B01G238400 chr7A 94.714 227 12 0 1720 1946 627010842 627010616 3.090000e-93 353.0
24 TraesCS1B01G238400 chr7A 94.714 227 12 0 1720 1946 627048611 627048385 3.090000e-93 353.0
25 TraesCS1B01G238400 chr7A 84.703 353 21 20 6634 6964 628385868 628385527 8.710000e-84 322.0
26 TraesCS1B01G238400 chr7A 81.057 454 37 25 6527 6964 627232609 627232189 4.050000e-82 316.0
27 TraesCS1B01G238400 chr7A 80.388 464 48 23 6522 6964 627008775 627008334 5.240000e-81 313.0
28 TraesCS1B01G238400 chr7A 80.449 445 51 15 6537 6964 628645452 628645877 2.440000e-79 307.0
29 TraesCS1B01G238400 chr7A 79.202 351 44 21 6624 6964 628488087 628487756 4.230000e-52 217.0
30 TraesCS1B01G238400 chr7A 78.731 268 19 18 6176 6425 627009017 627008770 2.020000e-30 145.0
31 TraesCS1B01G238400 chr7A 80.882 204 21 7 6773 6964 628389852 628389655 2.020000e-30 145.0
32 TraesCS1B01G238400 chr7A 84.416 154 13 7 6206 6352 627045674 627045525 2.620000e-29 141.0
33 TraesCS1B01G238400 chr7A 84.416 154 13 7 6206 6352 627119862 627119713 2.620000e-29 141.0
34 TraesCS1B01G238400 chr7A 81.646 158 8 6 6210 6352 626992956 626992805 2.050000e-20 111.0
35 TraesCS1B01G238400 chr7A 86.087 115 3 7 6060 6171 627009092 627008988 2.050000e-20 111.0
36 TraesCS1B01G238400 chr7A 90.361 83 5 2 6111 6190 626993011 626992929 9.550000e-19 106.0
37 TraesCS1B01G238400 chr7A 84.337 83 3 5 1604 1676 627010994 627010912 9.690000e-09 73.1
38 TraesCS1B01G238400 chr7A 84.337 83 3 5 1604 1676 627048763 627048681 9.690000e-09 73.1
39 TraesCS1B01G238400 chr5D 93.020 2020 117 12 3952 5961 289423524 289421519 0.000000e+00 2928.0
40 TraesCS1B01G238400 chr5D 94.433 952 47 6 4901 5848 289728673 289727724 0.000000e+00 1459.0
41 TraesCS1B01G238400 chr5D 94.581 775 36 3 897 1666 289798992 289798219 0.000000e+00 1194.0
42 TraesCS1B01G238400 chr5D 86.532 943 71 17 4781 5683 23824433 23823507 0.000000e+00 987.0
43 TraesCS1B01G238400 chr5D 90.026 772 45 8 916 1676 289425288 289424538 0.000000e+00 970.0
44 TraesCS1B01G238400 chr5D 90.571 700 58 7 3968 4662 289743645 289742949 0.000000e+00 920.0
45 TraesCS1B01G238400 chr5D 88.088 680 61 12 5059 5727 29904637 29905307 0.000000e+00 789.0
46 TraesCS1B01G238400 chr5D 90.354 508 48 1 4815 5322 289498132 289497626 0.000000e+00 665.0
47 TraesCS1B01G238400 chr5D 85.381 643 66 19 5448 6073 289497409 289496778 5.890000e-180 641.0
48 TraesCS1B01G238400 chr5D 90.586 478 42 2 991 1468 289501169 289500695 1.270000e-176 630.0
49 TraesCS1B01G238400 chr5D 88.627 510 53 5 4815 5322 289357322 289356816 3.570000e-172 616.0
50 TraesCS1B01G238400 chr5D 86.387 573 62 14 5450 6017 289356690 289356129 4.620000e-171 612.0
51 TraesCS1B01G238400 chr5D 90.580 414 33 6 5150 5561 29879026 29878617 1.710000e-150 544.0
52 TraesCS1B01G238400 chr5D 87.500 400 34 7 1673 2062 289424499 289424106 1.380000e-121 448.0
53 TraesCS1B01G238400 chr5D 85.442 419 27 15 1655 2062 289744615 289744220 8.410000e-109 405.0
54 TraesCS1B01G238400 chr5D 83.369 463 30 24 6522 6964 289727241 289726806 1.100000e-102 385.0
55 TraesCS1B01G238400 chr5D 82.705 451 31 27 6534 6964 289421185 289420762 2.390000e-94 357.0
56 TraesCS1B01G238400 chr5D 85.511 352 22 14 6633 6964 289355289 289354947 2.410000e-89 340.0
57 TraesCS1B01G238400 chr5D 91.393 244 14 4 3692 3931 289744029 289743789 1.870000e-85 327.0
58 TraesCS1B01G238400 chr5D 88.803 259 25 3 638 893 520631411 520631668 1.460000e-81 315.0
59 TraesCS1B01G238400 chr5D 88.672 256 26 2 641 893 509945685 509945430 6.780000e-80 309.0
60 TraesCS1B01G238400 chr5D 76.373 601 106 28 4039 4632 289499148 289498577 2.460000e-74 291.0
61 TraesCS1B01G238400 chr5D 87.160 257 22 3 6714 6964 331837827 331838078 1.480000e-71 281.0
62 TraesCS1B01G238400 chr5D 90.909 132 9 1 4751 4879 289742937 289742806 2.580000e-39 174.0
63 TraesCS1B01G238400 chr5D 92.857 112 7 1 6060 6170 289727576 289727465 2.010000e-35 161.0
64 TraesCS1B01G238400 chr5D 93.458 107 4 3 5060 5164 29879145 29879040 9.350000e-34 156.0
65 TraesCS1B01G238400 chr5D 82.199 191 11 8 6176 6352 289421442 289421261 7.280000e-30 143.0
66 TraesCS1B01G238400 chr5D 94.505 91 4 1 3535 3625 289744237 289744148 9.420000e-29 139.0
67 TraesCS1B01G238400 chr5D 81.152 191 12 7 6176 6352 289727491 289727311 1.580000e-26 132.0
68 TraesCS1B01G238400 chr5D 86.726 113 4 5 6060 6171 289421517 289421415 1.590000e-21 115.0
69 TraesCS1B01G238400 chr5D 90.411 73 7 0 5735 5807 29906116 29906188 5.750000e-16 97.1
70 TraesCS1B01G238400 chr6A 99.251 1469 6 2 2058 3525 157135634 157137098 0.000000e+00 2647.0
71 TraesCS1B01G238400 chr6A 98.162 1469 24 3 2059 3524 455053043 455051575 0.000000e+00 2560.0
72 TraesCS1B01G238400 chr6A 89.991 1089 92 10 4926 6014 107262745 107263816 0.000000e+00 1391.0
73 TraesCS1B01G238400 chr6A 82.143 392 28 19 6588 6964 158245589 158245225 1.470000e-76 298.0
74 TraesCS1B01G238400 chr6A 91.045 134 12 0 6004 6137 107263838 107263971 1.540000e-41 182.0
75 TraesCS1B01G238400 chr2A 98.704 1466 16 1 2059 3524 4117026 4118488 0.000000e+00 2599.0
76 TraesCS1B01G238400 chr2A 97.207 1468 30 5 2061 3524 166057580 166059040 0.000000e+00 2473.0
77 TraesCS1B01G238400 chr2A 96.524 1467 46 4 2058 3522 488092738 488091275 0.000000e+00 2422.0
78 TraesCS1B01G238400 chr3B 95.646 1470 58 5 2058 3523 22701686 22703153 0.000000e+00 2355.0
79 TraesCS1B01G238400 chr3B 80.435 92 8 7 6633 6724 68346970 68346889 2.100000e-05 62.1
80 TraesCS1B01G238400 chr6D 92.948 1489 84 12 2058 3530 450684243 450682760 0.000000e+00 2148.0
81 TraesCS1B01G238400 chr6D 81.739 345 23 14 6633 6964 124609388 124609071 1.160000e-62 252.0
82 TraesCS1B01G238400 chr6D 81.159 345 26 16 6633 6964 122989609 122989927 2.510000e-59 241.0
83 TraesCS1B01G238400 chr4A 96.305 1299 46 2 2059 3355 141566372 141567670 0.000000e+00 2132.0
84 TraesCS1B01G238400 chr2D 92.401 1487 90 11 2059 3523 58891100 58889615 0.000000e+00 2098.0
85 TraesCS1B01G238400 chr7B 84.036 2017 251 54 4039 6014 588880976 588878990 0.000000e+00 1875.0
86 TraesCS1B01G238400 chr7B 94.304 1106 40 9 906 2010 588502450 588501367 0.000000e+00 1672.0
87 TraesCS1B01G238400 chr7B 78.231 1470 233 50 4379 5806 589464221 589462797 0.000000e+00 861.0
88 TraesCS1B01G238400 chr7B 87.901 405 33 6 5747 6143 589734528 589734924 4.920000e-126 462.0
89 TraesCS1B01G238400 chr7B 83.296 449 39 24 6534 6964 589919871 589920301 1.420000e-101 381.0
90 TraesCS1B01G238400 chr7B 82.255 479 36 25 6507 6964 588823563 588823113 1.100000e-97 368.0
91 TraesCS1B01G238400 chr7B 87.195 328 24 12 6647 6964 588878209 588877890 2.390000e-94 357.0
92 TraesCS1B01G238400 chr7B 85.632 348 27 8 5805 6151 588824117 588823792 1.860000e-90 344.0
93 TraesCS1B01G238400 chr7B 84.354 294 23 16 6633 6912 589696241 589695957 4.140000e-67 267.0
94 TraesCS1B01G238400 chr7B 91.026 156 9 4 3535 3690 588501238 588501088 9.160000e-49 206.0
95 TraesCS1B01G238400 chr7B 98.077 52 1 0 3692 3743 588501061 588501010 2.670000e-14 91.6
96 TraesCS1B01G238400 chrUn 91.798 1146 49 24 638 1751 383290991 383292123 0.000000e+00 1554.0
97 TraesCS1B01G238400 chrUn 95.714 70 3 0 1740 1809 383292142 383292211 5.710000e-21 113.0
98 TraesCS1B01G238400 chr7D 96.256 828 29 2 3915 4740 545269003 545268176 0.000000e+00 1356.0
99 TraesCS1B01G238400 chr7D 91.570 688 38 9 991 1676 545270571 545269902 0.000000e+00 931.0
100 TraesCS1B01G238400 chr7D 86.124 627 66 10 5357 5973 509602669 509602054 0.000000e+00 656.0
101 TraesCS1B01G238400 chr7D 94.962 397 8 5 5104 5490 545267827 545267433 4.620000e-171 612.0
102 TraesCS1B01G238400 chr7D 96.910 356 11 0 4800 5155 545268180 545267825 1.290000e-166 597.0
103 TraesCS1B01G238400 chr7D 90.076 393 22 5 1673 2059 545269863 545269482 1.740000e-135 494.0
104 TraesCS1B01G238400 chr7D 87.871 404 18 12 3535 3913 545269496 545269099 4.960000e-121 446.0
105 TraesCS1B01G238400 chr7D 93.860 228 14 0 4844 5071 509603318 509603091 1.860000e-90 344.0
106 TraesCS1B01G238400 chr7D 78.912 588 55 34 6410 6964 545267203 545266652 1.120000e-87 335.0
107 TraesCS1B01G238400 chr7D 82.934 334 33 10 6647 6964 545650510 545650835 5.320000e-71 279.0
108 TraesCS1B01G238400 chr7D 86.207 261 19 8 6713 6964 545619830 545619578 4.140000e-67 267.0
109 TraesCS1B01G238400 chr7D 81.143 350 27 13 6634 6961 545647062 545647394 1.940000e-60 244.0
110 TraesCS1B01G238400 chr7D 77.778 378 27 26 6624 6963 545622628 545622270 5.550000e-41 180.0
111 TraesCS1B01G238400 chr7D 97.333 75 2 0 4786 4860 509610856 509610782 2.040000e-25 128.0
112 TraesCS1B01G238400 chr7D 100.000 37 0 0 6233 6269 545267430 545267394 1.250000e-07 69.4
113 TraesCS1B01G238400 chr7D 100.000 35 0 0 4915 4949 509610893 509610859 1.620000e-06 65.8
114 TraesCS1B01G238400 chr2B 88.676 1095 84 18 5066 6160 182135176 182134122 0.000000e+00 1299.0
115 TraesCS1B01G238400 chr2B 91.074 661 47 10 3959 4613 182141179 182140525 0.000000e+00 883.0
116 TraesCS1B01G238400 chr2B 82.625 541 51 22 6450 6964 182133968 182133445 8.290000e-119 438.0
117 TraesCS1B01G238400 chr2B 82.178 505 87 3 89 593 95851697 95851196 1.390000e-116 431.0
118 TraesCS1B01G238400 chr2B 92.381 210 14 1 5983 6190 127790634 127790425 1.470000e-76 298.0
119 TraesCS1B01G238400 chr2B 80.455 440 40 26 6527 6964 135512547 135512942 1.900000e-75 294.0
120 TraesCS1B01G238400 chr2B 81.818 231 20 8 3692 3915 182141471 182141256 2.580000e-39 174.0
121 TraesCS1B01G238400 chr2B 92.929 99 7 0 1758 1856 182141932 182141834 2.020000e-30 145.0
122 TraesCS1B01G238400 chr2B 94.505 91 4 1 3535 3625 182141683 182141594 9.420000e-29 139.0
123 TraesCS1B01G238400 chr2B 80.117 171 25 6 1900 2062 182141835 182141666 1.230000e-22 119.0
124 TraesCS1B01G238400 chr3A 88.372 903 83 5 4781 5683 723439723 723440603 0.000000e+00 1066.0
125 TraesCS1B01G238400 chr3A 87.352 253 27 3 644 893 728542070 728541820 1.140000e-72 285.0
126 TraesCS1B01G238400 chr3A 86.957 253 28 3 644 893 728572518 728572268 5.320000e-71 279.0
127 TraesCS1B01G238400 chr3A 86.400 250 29 3 647 893 728592943 728592696 1.150000e-67 268.0
128 TraesCS1B01G238400 chr3A 81.452 124 10 9 6620 6741 55501437 55501325 9.620000e-14 89.8
129 TraesCS1B01G238400 chr6B 87.654 243 23 6 638 877 694658614 694658852 6.880000e-70 276.0
130 TraesCS1B01G238400 chr6B 100.000 31 0 0 6376 6406 50336568 50336538 2.710000e-04 58.4
131 TraesCS1B01G238400 chr1A 81.724 290 45 6 307 596 353259136 353258855 1.170000e-57 235.0
132 TraesCS1B01G238400 chr1D 92.308 39 1 1 3910 3946 439024725 439024763 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G238400 chr1B 426496630 426503593 6963 True 12861.000000 12861 100.000000 1 6964 1 chr1B.!!$R1 6963
1 TraesCS1B01G238400 chr1B 133124956 133129039 4083 True 756.000000 1000 86.100667 991 6027 3 chr1B.!!$R3 5036
2 TraesCS1B01G238400 chr1B 133111621 133114831 3210 True 750.960000 2988 89.192200 1817 6428 5 chr1B.!!$R2 4611
3 TraesCS1B01G238400 chr7A 709680097 709681569 1472 False 2508.000000 2508 97.488000 2060 3525 1 chr7A.!!$F3 1465
4 TraesCS1B01G238400 chr7A 686323856 686325328 1472 False 2309.000000 2309 94.986000 2055 3526 1 chr7A.!!$F2 1471
5 TraesCS1B01G238400 chr7A 580505038 580506029 991 True 1415.000000 1415 92.385000 4786 5781 1 chr7A.!!$R1 995
6 TraesCS1B01G238400 chr7A 627045525 627049399 3874 True 965.820000 3493 88.844600 916 6352 5 chr7A.!!$R5 5436
7 TraesCS1B01G238400 chr7A 627232189 627236524 4335 True 640.666667 983 82.681000 4039 6964 3 chr7A.!!$R7 2925
8 TraesCS1B01G238400 chr7A 627119713 627120664 951 True 564.000000 987 87.080000 5367 6352 2 chr7A.!!$R6 985
9 TraesCS1B01G238400 chr7A 628385527 628389852 4325 True 520.333333 1094 84.208000 5024 6964 3 chr7A.!!$R8 1940
10 TraesCS1B01G238400 chr7A 627008334 627011630 3296 True 476.585714 1572 86.363143 916 6964 7 chr7A.!!$R4 6048
11 TraesCS1B01G238400 chr5D 289798219 289798992 773 True 1194.000000 1194 94.581000 897 1666 1 chr5D.!!$R2 769
12 TraesCS1B01G238400 chr5D 23823507 23824433 926 True 987.000000 987 86.532000 4781 5683 1 chr5D.!!$R1 902
13 TraesCS1B01G238400 chr5D 289420762 289425288 4526 True 826.833333 2928 87.029333 916 6964 6 chr5D.!!$R6 6048
14 TraesCS1B01G238400 chr5D 289496778 289501169 4391 True 556.750000 665 85.673500 991 6073 4 chr5D.!!$R7 5082
15 TraesCS1B01G238400 chr5D 289726806 289728673 1867 True 534.250000 1459 87.952750 4901 6964 4 chr5D.!!$R8 2063
16 TraesCS1B01G238400 chr5D 289354947 289357322 2375 True 522.666667 616 86.841667 4815 6964 3 chr5D.!!$R5 2149
17 TraesCS1B01G238400 chr5D 29904637 29906188 1551 False 443.050000 789 89.249500 5059 5807 2 chr5D.!!$F3 748
18 TraesCS1B01G238400 chr5D 289742806 289744615 1809 True 393.000000 920 90.564000 1655 4879 5 chr5D.!!$R9 3224
19 TraesCS1B01G238400 chr5D 29878617 29879145 528 True 350.000000 544 92.019000 5060 5561 2 chr5D.!!$R4 501
20 TraesCS1B01G238400 chr6A 157135634 157137098 1464 False 2647.000000 2647 99.251000 2058 3525 1 chr6A.!!$F1 1467
21 TraesCS1B01G238400 chr6A 455051575 455053043 1468 True 2560.000000 2560 98.162000 2059 3524 1 chr6A.!!$R2 1465
22 TraesCS1B01G238400 chr6A 107262745 107263971 1226 False 786.500000 1391 90.518000 4926 6137 2 chr6A.!!$F2 1211
23 TraesCS1B01G238400 chr2A 4117026 4118488 1462 False 2599.000000 2599 98.704000 2059 3524 1 chr2A.!!$F1 1465
24 TraesCS1B01G238400 chr2A 166057580 166059040 1460 False 2473.000000 2473 97.207000 2061 3524 1 chr2A.!!$F2 1463
25 TraesCS1B01G238400 chr2A 488091275 488092738 1463 True 2422.000000 2422 96.524000 2058 3522 1 chr2A.!!$R1 1464
26 TraesCS1B01G238400 chr3B 22701686 22703153 1467 False 2355.000000 2355 95.646000 2058 3523 1 chr3B.!!$F1 1465
27 TraesCS1B01G238400 chr6D 450682760 450684243 1483 True 2148.000000 2148 92.948000 2058 3530 1 chr6D.!!$R2 1472
28 TraesCS1B01G238400 chr4A 141566372 141567670 1298 False 2132.000000 2132 96.305000 2059 3355 1 chr4A.!!$F1 1296
29 TraesCS1B01G238400 chr2D 58889615 58891100 1485 True 2098.000000 2098 92.401000 2059 3523 1 chr2D.!!$R1 1464
30 TraesCS1B01G238400 chr7B 588877890 588880976 3086 True 1116.000000 1875 85.615500 4039 6964 2 chr7B.!!$R5 2925
31 TraesCS1B01G238400 chr7B 589462797 589464221 1424 True 861.000000 861 78.231000 4379 5806 1 chr7B.!!$R1 1427
32 TraesCS1B01G238400 chr7B 588501010 588502450 1440 True 656.533333 1672 94.469000 906 3743 3 chr7B.!!$R3 2837
33 TraesCS1B01G238400 chr7B 588823113 588824117 1004 True 356.000000 368 83.943500 5805 6964 2 chr7B.!!$R4 1159
34 TraesCS1B01G238400 chrUn 383290991 383292211 1220 False 833.500000 1554 93.756000 638 1809 2 chrUn.!!$F1 1171
35 TraesCS1B01G238400 chr7D 545266652 545270571 3919 True 605.050000 1356 92.069625 991 6964 8 chr7D.!!$R3 5973
36 TraesCS1B01G238400 chr7D 509602054 509603318 1264 True 500.000000 656 89.992000 4844 5973 2 chr7D.!!$R1 1129
37 TraesCS1B01G238400 chr7D 545647062 545650835 3773 False 261.500000 279 82.038500 6634 6964 2 chr7D.!!$F1 330
38 TraesCS1B01G238400 chr7D 545619578 545622628 3050 True 223.500000 267 81.992500 6624 6964 2 chr7D.!!$R4 340
39 TraesCS1B01G238400 chr2B 182133445 182135176 1731 True 868.500000 1299 85.650500 5066 6964 2 chr2B.!!$R3 1898
40 TraesCS1B01G238400 chr2B 95851196 95851697 501 True 431.000000 431 82.178000 89 593 1 chr2B.!!$R1 504
41 TraesCS1B01G238400 chr2B 182140525 182141932 1407 True 292.000000 883 88.088600 1758 4613 5 chr2B.!!$R4 2855
42 TraesCS1B01G238400 chr3A 723439723 723440603 880 False 1066.000000 1066 88.372000 4781 5683 1 chr3A.!!$F1 902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.104120 CGTCATACGGGATGGCTCAA 59.896 55.000 2.90 0.00 38.08 3.02 F
95 96 0.107456 CATACGGGATGGCTCAAGCT 59.893 55.000 1.46 0.00 41.70 3.74 F
399 400 0.261696 AGTTTGTTGGGCCAACTCCT 59.738 50.000 40.22 30.44 43.85 3.69 F
615 616 0.603707 CATTACATCGATGCGGGCCT 60.604 55.000 25.11 7.24 0.00 5.19 F
617 618 0.813610 TTACATCGATGCGGGCCTTG 60.814 55.000 25.11 0.00 0.00 3.61 F
1732 1913 0.824759 AGGGGCTACAGCTAACTTCG 59.175 55.000 0.54 0.00 41.70 3.79 F
3539 4226 0.984995 GGGGGCAGTACTCTTGAAGT 59.015 55.000 0.00 0.00 42.33 3.01 F
3540 4227 1.351350 GGGGGCAGTACTCTTGAAGTT 59.649 52.381 0.00 0.00 39.55 2.66 F
5508 7379 1.197721 GAGCTTGTGGATCCGTTGTTG 59.802 52.381 7.39 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 2022 1.077930 CAGTGAGCACCCCCTCATG 60.078 63.158 0.00 0.00 43.19 3.07 R
1949 2452 8.686334 ACAAGGAAAAATCGTGCTTATATTGAT 58.314 29.630 0.00 0.00 0.00 2.57 R
1995 2510 9.582648 AACTTAACAAGGGTACATAACTTGAAT 57.417 29.630 19.13 12.48 43.13 2.57 R
3414 4098 3.790437 CCACCAGAGGCATCCGCT 61.790 66.667 0.00 0.00 38.60 5.52 R
3541 4228 6.419484 TCAACAGAGTCATAAGAAGTGGAA 57.581 37.500 0.00 0.00 0.00 3.53 R
4419 5631 0.847373 TTAAGTCCACCAGGCAACCA 59.153 50.000 0.00 0.00 33.74 3.67 R
5508 7379 0.317479 CGACTTCATATCCGACCCCC 59.683 60.000 0.00 0.00 0.00 5.40 R
5610 7481 1.822990 CATTCAGGGTTCAGCATTGCT 59.177 47.619 5.03 5.03 40.77 3.91 R
6505 9400 0.028902 GGCTAAAACGCGCCCTAATG 59.971 55.000 5.73 0.00 40.43 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.597742 TACTACCTACGGACGCATCC 58.402 55.000 0.00 0.00 42.28 3.51
33 34 2.484662 GCATCCGCGCATGTTTGA 59.515 55.556 12.36 0.00 0.00 2.69
35 36 1.063006 CATCCGCGCATGTTTGAGG 59.937 57.895 8.75 0.00 0.00 3.86
36 37 2.114670 ATCCGCGCATGTTTGAGGG 61.115 57.895 8.75 0.00 35.74 4.30
37 38 3.814268 CCGCGCATGTTTGAGGGG 61.814 66.667 8.75 0.00 46.32 4.79
40 41 2.676121 CGCATGTTTGAGGGGCCA 60.676 61.111 4.39 0.00 0.00 5.36
41 42 2.053865 CGCATGTTTGAGGGGCCAT 61.054 57.895 4.39 0.00 0.00 4.40
42 43 0.751277 CGCATGTTTGAGGGGCCATA 60.751 55.000 4.39 0.00 0.00 2.74
43 44 1.708341 GCATGTTTGAGGGGCCATAT 58.292 50.000 4.39 0.00 0.00 1.78
44 45 2.041701 GCATGTTTGAGGGGCCATATT 58.958 47.619 4.39 0.00 0.00 1.28
45 46 2.435437 GCATGTTTGAGGGGCCATATTT 59.565 45.455 4.39 0.00 0.00 1.40
46 47 3.742013 GCATGTTTGAGGGGCCATATTTG 60.742 47.826 4.39 0.00 0.00 2.32
48 49 3.096092 TGTTTGAGGGGCCATATTTGAC 58.904 45.455 4.39 0.00 0.00 3.18
49 50 3.096092 GTTTGAGGGGCCATATTTGACA 58.904 45.455 4.39 0.00 0.00 3.58
50 51 3.686227 TTGAGGGGCCATATTTGACAT 57.314 42.857 4.39 0.00 0.00 3.06
51 52 4.805140 TTGAGGGGCCATATTTGACATA 57.195 40.909 4.39 0.00 0.00 2.29
52 53 5.337956 TTGAGGGGCCATATTTGACATAT 57.662 39.130 4.39 0.00 0.00 1.78
53 54 4.922206 TGAGGGGCCATATTTGACATATC 58.078 43.478 4.39 0.00 0.00 1.63
56 57 3.245586 GGGGCCATATTTGACATATCCCA 60.246 47.826 4.39 0.00 33.02 4.37
57 58 4.415596 GGGCCATATTTGACATATCCCAA 58.584 43.478 4.39 0.00 0.00 4.12
58 59 5.025453 GGGCCATATTTGACATATCCCAAT 58.975 41.667 4.39 0.00 0.00 3.16
60 61 5.481473 GGCCATATTTGACATATCCCAATGT 59.519 40.000 0.00 0.00 42.75 2.71
61 62 6.663093 GGCCATATTTGACATATCCCAATGTA 59.337 38.462 0.00 0.00 40.17 2.29
63 64 7.611467 GCCATATTTGACATATCCCAATGTAGA 59.389 37.037 0.00 0.00 40.17 2.59
64 65 9.690913 CCATATTTGACATATCCCAATGTAGAT 57.309 33.333 0.00 0.00 40.17 1.98
66 67 6.882610 TTTGACATATCCCAATGTAGATGC 57.117 37.500 0.00 0.00 40.17 3.91
71 72 5.545335 ACATATCCCAATGTAGATGCTCTGA 59.455 40.000 0.00 0.00 38.31 3.27
72 73 3.827008 TCCCAATGTAGATGCTCTGAC 57.173 47.619 0.00 0.00 0.00 3.51
74 75 2.477825 CCAATGTAGATGCTCTGACCG 58.522 52.381 0.00 0.00 0.00 4.79
75 76 2.159043 CCAATGTAGATGCTCTGACCGT 60.159 50.000 0.00 0.00 0.00 4.83
77 78 1.834188 TGTAGATGCTCTGACCGTCA 58.166 50.000 0.29 0.29 0.00 4.35
78 79 2.379005 TGTAGATGCTCTGACCGTCAT 58.621 47.619 0.62 0.00 0.00 3.06
79 80 3.551846 TGTAGATGCTCTGACCGTCATA 58.448 45.455 0.62 0.00 0.00 2.15
80 81 3.315470 TGTAGATGCTCTGACCGTCATAC 59.685 47.826 0.62 0.87 0.00 2.39
81 82 1.335182 AGATGCTCTGACCGTCATACG 59.665 52.381 0.62 0.00 42.11 3.06
90 91 4.655527 CGTCATACGGGATGGCTC 57.344 61.111 2.90 0.00 38.08 4.70
91 92 1.739667 CGTCATACGGGATGGCTCA 59.260 57.895 2.90 0.00 38.08 4.26
92 93 0.104120 CGTCATACGGGATGGCTCAA 59.896 55.000 2.90 0.00 38.08 3.02
95 96 0.107456 CATACGGGATGGCTCAAGCT 59.893 55.000 1.46 0.00 41.70 3.74
96 97 0.107456 ATACGGGATGGCTCAAGCTG 59.893 55.000 1.46 0.00 41.70 4.24
99 100 1.372087 CGGGATGGCTCAAGCTGAAC 61.372 60.000 1.46 0.00 41.70 3.18
100 101 0.322816 GGGATGGCTCAAGCTGAACA 60.323 55.000 1.46 0.00 41.70 3.18
120 121 7.153315 TGAACATTGATGCAAGCTTTATTCAA 58.847 30.769 13.93 13.93 0.00 2.69
124 125 5.571784 TGATGCAAGCTTTATTCAAGAGG 57.428 39.130 0.00 0.00 33.80 3.69
129 130 4.990426 GCAAGCTTTATTCAAGAGGCAAAA 59.010 37.500 0.00 0.00 33.80 2.44
138 139 1.614903 CAAGAGGCAAAACATGGAGCA 59.385 47.619 0.00 0.00 0.00 4.26
140 141 2.097825 AGAGGCAAAACATGGAGCATC 58.902 47.619 0.00 2.64 38.00 3.91
147 148 3.882326 CATGGAGCATCGGGGGCT 61.882 66.667 0.00 0.00 46.07 5.19
155 156 2.285368 ATCGGGGGCTGTTCTCCA 60.285 61.111 0.00 0.00 0.00 3.86
169 170 5.255397 TGTTCTCCAAGATACAAATGGGT 57.745 39.130 0.00 0.00 34.89 4.51
171 172 5.222027 TGTTCTCCAAGATACAAATGGGTCA 60.222 40.000 0.00 0.00 34.89 4.02
177 178 6.157820 TCCAAGATACAAATGGGTCAGTGATA 59.842 38.462 0.00 0.00 34.89 2.15
223 224 2.248280 TTGTTTTAGTGCTGAGGCGA 57.752 45.000 0.00 0.00 42.25 5.54
229 230 0.966179 TAGTGCTGAGGCGACTGAAA 59.034 50.000 0.00 0.00 44.43 2.69
249 250 2.225467 ACTGAAGCTTGTCTTGAAGGC 58.775 47.619 2.10 0.00 34.56 4.35
254 255 1.074405 AGCTTGTCTTGAAGGCATCCA 59.926 47.619 0.00 0.00 25.43 3.41
257 258 2.205022 TGTCTTGAAGGCATCCAAGG 57.795 50.000 0.00 0.00 39.98 3.61
258 259 1.704628 TGTCTTGAAGGCATCCAAGGA 59.295 47.619 0.00 0.00 39.98 3.36
276 277 2.709934 AGGAACCATGCAGCTCATAGAT 59.290 45.455 0.00 0.00 33.19 1.98
278 279 3.495629 GGAACCATGCAGCTCATAGATCA 60.496 47.826 0.00 0.00 33.19 2.92
296 297 9.149225 CATAGATCAGCTGGTAATTATTGAGAC 57.851 37.037 15.13 0.00 0.00 3.36
303 304 4.439057 TGGTAATTATTGAGACCGACTGC 58.561 43.478 0.00 0.00 34.49 4.40
305 306 2.961526 ATTATTGAGACCGACTGCGT 57.038 45.000 0.00 0.00 35.23 5.24
314 315 0.944311 ACCGACTGCGTGAATGTCAC 60.944 55.000 0.00 0.00 43.65 3.67
318 319 0.667487 ACTGCGTGAATGTCACTCGG 60.667 55.000 6.80 6.28 44.85 4.63
319 320 1.354337 CTGCGTGAATGTCACTCGGG 61.354 60.000 6.80 0.00 44.85 5.14
323 324 0.517316 GTGAATGTCACTCGGGCAAC 59.483 55.000 1.09 0.00 43.73 4.17
325 326 1.079503 GAATGTCACTCGGGCAACTC 58.920 55.000 0.00 0.00 0.00 3.01
337 338 1.073923 GGGCAACTCTCTTCAAGGGAA 59.926 52.381 0.00 0.00 0.00 3.97
343 344 6.382608 GCAACTCTCTTCAAGGGAATTTAAC 58.617 40.000 0.00 0.00 31.34 2.01
344 345 6.603095 CAACTCTCTTCAAGGGAATTTAACG 58.397 40.000 0.00 0.00 31.34 3.18
349 350 5.190677 TCTTCAAGGGAATTTAACGGATCC 58.809 41.667 0.00 0.00 31.34 3.36
365 366 2.075355 ATCCCCCGTTGGCAACTTGA 62.075 55.000 26.26 16.90 37.61 3.02
366 367 1.606313 CCCCCGTTGGCAACTTGAT 60.606 57.895 26.26 0.00 37.61 2.57
371 372 2.432444 CCGTTGGCAACTTGATTAGGA 58.568 47.619 26.26 0.00 37.61 2.94
378 379 6.916360 TGGCAACTTGATTAGGAAAATTCT 57.084 33.333 0.00 0.00 37.61 2.40
379 380 8.303876 GTTGGCAACTTGATTAGGAAAATTCTA 58.696 33.333 22.66 0.00 37.61 2.10
399 400 0.261696 AGTTTGTTGGGCCAACTCCT 59.738 50.000 40.22 30.44 43.85 3.69
445 446 6.247229 TCAAGAAATAGCTATAGGGTTGCA 57.753 37.500 6.68 0.00 0.00 4.08
448 449 6.192970 AGAAATAGCTATAGGGTTGCACAT 57.807 37.500 6.68 0.00 0.00 3.21
459 460 1.293924 GTTGCACATGCTCTCGCTAT 58.706 50.000 5.31 0.00 42.66 2.97
460 461 1.004185 GTTGCACATGCTCTCGCTATG 60.004 52.381 5.31 0.00 42.66 2.23
468 469 4.280929 ACATGCTCTCGCTATGTATGGTAA 59.719 41.667 0.00 0.00 36.67 2.85
472 473 4.216687 GCTCTCGCTATGTATGGTAAGAGT 59.783 45.833 0.00 0.00 33.27 3.24
473 474 5.411977 GCTCTCGCTATGTATGGTAAGAGTA 59.588 44.000 0.00 0.00 33.27 2.59
480 481 7.364200 GCTATGTATGGTAAGAGTAGTGTGAG 58.636 42.308 0.00 0.00 0.00 3.51
481 482 7.228906 GCTATGTATGGTAAGAGTAGTGTGAGA 59.771 40.741 0.00 0.00 0.00 3.27
492 493 4.220724 AGTAGTGTGAGAAAGGGTGTGTA 58.779 43.478 0.00 0.00 0.00 2.90
496 497 4.348168 AGTGTGAGAAAGGGTGTGTAGATT 59.652 41.667 0.00 0.00 0.00 2.40
498 499 4.346709 TGTGAGAAAGGGTGTGTAGATTGA 59.653 41.667 0.00 0.00 0.00 2.57
505 506 2.416972 GGGTGTGTAGATTGACTCGGTC 60.417 54.545 0.00 0.00 0.00 4.79
508 509 2.418976 TGTGTAGATTGACTCGGTCTCG 59.581 50.000 5.77 0.00 33.15 4.04
514 515 3.063084 GACTCGGTCTCGGCCTGT 61.063 66.667 0.00 0.00 36.95 4.00
533 534 4.662961 CGCTGTGGCTGGTCGACA 62.663 66.667 18.91 2.63 36.09 4.35
612 613 3.312421 AGAAAACATTACATCGATGCGGG 59.688 43.478 25.11 14.21 0.00 6.13
613 614 0.944386 AACATTACATCGATGCGGGC 59.056 50.000 25.11 0.00 0.00 6.13
615 616 0.603707 CATTACATCGATGCGGGCCT 60.604 55.000 25.11 7.24 0.00 5.19
617 618 0.813610 TTACATCGATGCGGGCCTTG 60.814 55.000 25.11 0.00 0.00 3.61
624 625 4.365111 TGCGGGCCTTGGCATTCT 62.365 61.111 14.04 0.00 33.52 2.40
625 626 3.070576 GCGGGCCTTGGCATTCTT 61.071 61.111 14.04 0.00 0.00 2.52
627 628 1.216178 CGGGCCTTGGCATTCTTTG 59.784 57.895 14.04 0.00 0.00 2.77
637 638 2.422276 GCATTCTTTGCGTTTCCAGT 57.578 45.000 0.00 0.00 42.54 4.00
638 639 2.053627 GCATTCTTTGCGTTTCCAGTG 58.946 47.619 0.00 0.00 42.54 3.66
639 640 2.053627 CATTCTTTGCGTTTCCAGTGC 58.946 47.619 0.00 0.00 0.00 4.40
640 641 1.388547 TTCTTTGCGTTTCCAGTGCT 58.611 45.000 0.00 0.00 0.00 4.40
641 642 2.248280 TCTTTGCGTTTCCAGTGCTA 57.752 45.000 0.00 0.00 0.00 3.49
642 643 1.871039 TCTTTGCGTTTCCAGTGCTAC 59.129 47.619 0.00 0.00 0.00 3.58
665 666 4.115401 TGGATCTGACGAGAAACATGAG 57.885 45.455 0.00 0.00 0.00 2.90
716 717 2.390599 CCAGCAACACGGGATGACG 61.391 63.158 0.00 0.00 35.22 4.35
742 744 2.210711 GGAGGCCTAGATGACGGGG 61.211 68.421 4.42 0.00 0.00 5.73
777 779 1.153939 CGAGGACGTCCAGCAGAAG 60.154 63.158 35.00 14.15 38.89 2.85
836 838 2.202058 GAGAAAGTCAACGCGCGC 60.202 61.111 32.58 23.91 0.00 6.86
851 853 1.944676 GCGCAGGATCGAACGGTAG 60.945 63.158 0.30 0.00 0.00 3.18
1498 1578 3.645212 TCAAAATTGGGGCAATCACTGAA 59.355 39.130 0.00 0.00 32.43 3.02
1586 1682 9.893305 ATTTTACTTAAATTCGGTTGAACTGAG 57.107 29.630 6.96 0.00 36.81 3.35
1729 1910 1.196012 GTGAGGGGCTACAGCTAACT 58.804 55.000 0.54 0.00 41.70 2.24
1732 1913 0.824759 AGGGGCTACAGCTAACTTCG 59.175 55.000 0.54 0.00 41.70 3.79
1799 2022 7.821359 TGATATTTGATATTGTCTAGCAGGCTC 59.179 37.037 0.00 0.00 0.00 4.70
1857 2080 3.236632 TCGTCACATCAGGTCAGATTG 57.763 47.619 0.00 0.00 0.00 2.67
1909 2373 4.818534 ATGTACGCCACATCAATGAATC 57.181 40.909 0.00 0.00 44.99 2.52
1923 2387 8.025445 ACATCAATGAATCTGTTTGACTTAAGC 58.975 33.333 1.29 0.00 32.61 3.09
1984 2499 6.640907 GCACGATTTTTCCTTGTTAAGTTGAT 59.359 34.615 0.00 0.00 0.00 2.57
2012 2642 8.090788 AGTGTCATATTCAAGTTATGTACCCT 57.909 34.615 0.00 0.00 0.00 4.34
2015 2645 8.325787 TGTCATATTCAAGTTATGTACCCTTGT 58.674 33.333 9.88 0.00 37.45 3.16
2052 2701 6.152932 ACAGACTCAAATGCATGAAGTTTT 57.847 33.333 0.00 0.00 0.00 2.43
2053 2702 6.211515 ACAGACTCAAATGCATGAAGTTTTC 58.788 36.000 0.00 0.00 0.00 2.29
2054 2703 5.632347 CAGACTCAAATGCATGAAGTTTTCC 59.368 40.000 0.00 0.00 0.00 3.13
2055 2704 5.302568 AGACTCAAATGCATGAAGTTTTCCA 59.697 36.000 0.00 0.00 0.00 3.53
2056 2705 5.291971 ACTCAAATGCATGAAGTTTTCCAC 58.708 37.500 0.00 0.00 0.00 4.02
2157 2807 3.277481 CGCTACAAACTCGAACAACAAC 58.723 45.455 0.00 0.00 0.00 3.32
3538 4225 3.863407 GGGGGCAGTACTCTTGAAG 57.137 57.895 0.00 0.00 0.00 3.02
3539 4226 0.984995 GGGGGCAGTACTCTTGAAGT 59.015 55.000 0.00 0.00 42.33 3.01
3540 4227 1.351350 GGGGGCAGTACTCTTGAAGTT 59.649 52.381 0.00 0.00 39.55 2.66
3541 4228 2.224793 GGGGGCAGTACTCTTGAAGTTT 60.225 50.000 0.00 0.00 39.55 2.66
3542 4229 3.487372 GGGGCAGTACTCTTGAAGTTTT 58.513 45.455 0.00 0.00 39.55 2.43
3626 4349 8.113462 TCCTATATTTAGGCTTCCAAACAAAGT 58.887 33.333 4.43 0.00 44.20 2.66
3756 4515 2.925563 GCTTCAAGGATTTTGGATTGCG 59.074 45.455 0.00 0.00 0.00 4.85
3907 4755 1.933247 GCACTAGCTACTGGAAGCAG 58.067 55.000 6.97 0.00 45.30 4.24
3996 5078 8.507524 AGAAATTCCTTTAGCACATACTTACC 57.492 34.615 0.00 0.00 0.00 2.85
4018 5100 5.891551 ACCCCATTAGTAACCACATGAAATC 59.108 40.000 0.00 0.00 0.00 2.17
4419 5631 3.769300 CCCTTAGTAAAAATTGCAGGGCT 59.231 43.478 0.00 0.00 33.31 5.19
4670 6134 1.789054 CGCGCCTCGTTTAATTCCAAC 60.789 52.381 0.00 0.00 0.00 3.77
4720 6185 7.491372 CGTCTACAATTAAATCAAGGCTACAGA 59.509 37.037 0.00 0.00 0.00 3.41
4893 6414 4.741928 ACAGGGTTAACAGAGGGAATTT 57.258 40.909 8.10 0.00 0.00 1.82
5040 6598 2.161486 GTAGCAGAAGAGCGCACGG 61.161 63.158 11.47 0.00 40.15 4.94
5336 7044 9.371136 GATGTGAGTGAACTGAACATCTATTTA 57.629 33.333 19.38 0.00 40.26 1.40
5385 7203 8.642935 TCACATTCATGGGATGTTTACTTTTA 57.357 30.769 11.42 0.00 34.77 1.52
5508 7379 1.197721 GAGCTTGTGGATCCGTTGTTG 59.802 52.381 7.39 0.00 0.00 3.33
5513 7384 2.157452 TGGATCCGTTGTTGGGGGT 61.157 57.895 7.39 0.00 0.00 4.95
5610 7481 1.536940 CCACCATGACAGATGTTGCA 58.463 50.000 0.00 0.00 0.00 4.08
5733 8418 1.134907 GGCCAATCAAGCAGGACAATG 60.135 52.381 0.00 0.00 0.00 2.82
5772 8457 0.036952 CAGCTCCAATGTCGACCAGT 60.037 55.000 14.12 0.00 0.00 4.00
5789 8474 4.759782 ACCAGTGTTCGAATCATTCTAGG 58.240 43.478 0.00 0.00 0.00 3.02
5830 8554 5.738619 TGGAGAACATTCAGTAGTAGCAA 57.261 39.130 0.00 0.00 0.00 3.91
5860 8589 9.423061 GTACAATGAAAATGTAAGCAAGGATTT 57.577 29.630 0.00 0.00 35.21 2.17
5953 8708 2.988570 ACACGTTTCTGTGGTACCAAA 58.011 42.857 18.31 11.13 44.21 3.28
5954 8709 3.345414 ACACGTTTCTGTGGTACCAAAA 58.655 40.909 18.31 11.25 44.21 2.44
5955 8710 3.127376 ACACGTTTCTGTGGTACCAAAAC 59.873 43.478 22.66 22.66 44.21 2.43
5956 8711 3.375922 CACGTTTCTGTGGTACCAAAACT 59.624 43.478 26.65 16.67 36.20 2.66
5957 8712 4.571580 CACGTTTCTGTGGTACCAAAACTA 59.428 41.667 26.65 10.03 36.20 2.24
5958 8713 4.571984 ACGTTTCTGTGGTACCAAAACTAC 59.428 41.667 26.65 17.76 0.00 2.73
5959 8714 4.024641 CGTTTCTGTGGTACCAAAACTACC 60.025 45.833 26.65 12.46 35.13 3.18
5960 8715 4.774660 TTCTGTGGTACCAAAACTACCA 57.225 40.909 18.31 7.58 41.19 3.25
5961 8716 4.345859 TCTGTGGTACCAAAACTACCAG 57.654 45.455 18.31 17.19 43.54 4.00
5962 8717 3.968649 TCTGTGGTACCAAAACTACCAGA 59.031 43.478 18.31 19.21 43.54 3.86
5963 8718 4.062991 CTGTGGTACCAAAACTACCAGAC 58.937 47.826 18.31 0.00 43.54 3.51
5964 8719 3.712733 TGTGGTACCAAAACTACCAGACT 59.287 43.478 18.31 0.00 43.54 3.24
5965 8720 4.062991 GTGGTACCAAAACTACCAGACTG 58.937 47.826 18.31 0.00 43.54 3.51
5966 8721 3.968649 TGGTACCAAAACTACCAGACTGA 59.031 43.478 13.60 0.00 39.02 3.41
5967 8722 4.595781 TGGTACCAAAACTACCAGACTGAT 59.404 41.667 13.60 0.00 39.02 2.90
5968 8723 5.072600 TGGTACCAAAACTACCAGACTGATT 59.927 40.000 13.60 0.00 39.02 2.57
5969 8724 6.002082 GGTACCAAAACTACCAGACTGATTT 58.998 40.000 7.15 0.00 34.74 2.17
5970 8725 6.489022 GGTACCAAAACTACCAGACTGATTTT 59.511 38.462 7.15 2.90 34.74 1.82
5971 8726 6.635030 ACCAAAACTACCAGACTGATTTTC 57.365 37.500 3.32 0.00 0.00 2.29
5972 8727 5.535030 ACCAAAACTACCAGACTGATTTTCC 59.465 40.000 3.32 0.00 0.00 3.13
5973 8728 5.770162 CCAAAACTACCAGACTGATTTTCCT 59.230 40.000 3.32 0.00 0.00 3.36
5974 8729 6.940298 CCAAAACTACCAGACTGATTTTCCTA 59.060 38.462 3.32 0.00 0.00 2.94
5975 8730 7.611855 CCAAAACTACCAGACTGATTTTCCTAT 59.388 37.037 3.32 0.00 0.00 2.57
5976 8731 9.014297 CAAAACTACCAGACTGATTTTCCTATT 57.986 33.333 3.32 0.00 0.00 1.73
5977 8732 9.588096 AAAACTACCAGACTGATTTTCCTATTT 57.412 29.630 3.32 0.00 0.00 1.40
5978 8733 9.588096 AAACTACCAGACTGATTTTCCTATTTT 57.412 29.630 3.32 0.00 0.00 1.82
5979 8734 8.794335 ACTACCAGACTGATTTTCCTATTTTC 57.206 34.615 3.32 0.00 0.00 2.29
5980 8735 8.383175 ACTACCAGACTGATTTTCCTATTTTCA 58.617 33.333 3.32 0.00 0.00 2.69
5981 8736 9.231297 CTACCAGACTGATTTTCCTATTTTCAA 57.769 33.333 3.32 0.00 0.00 2.69
6160 9010 7.913674 ACTTCAGAATAATCAGACTTCAACC 57.086 36.000 0.00 0.00 0.00 3.77
6188 9039 5.369685 TTTTTGCGCATAATCAGACTTCA 57.630 34.783 12.75 0.00 0.00 3.02
6189 9040 5.369685 TTTTGCGCATAATCAGACTTCAA 57.630 34.783 12.75 0.00 0.00 2.69
6190 9041 4.604843 TTGCGCATAATCAGACTTCAAG 57.395 40.909 12.75 0.00 0.00 3.02
6191 9042 3.599343 TGCGCATAATCAGACTTCAAGT 58.401 40.909 5.66 0.00 0.00 3.16
6192 9043 3.618594 TGCGCATAATCAGACTTCAAGTC 59.381 43.478 5.66 9.78 45.38 3.01
6269 9134 1.719600 CAGCAACTACAGAGGTCAGC 58.280 55.000 0.00 0.00 0.00 4.26
6270 9135 1.001293 CAGCAACTACAGAGGTCAGCA 59.999 52.381 0.00 0.00 0.00 4.41
6271 9136 1.694150 AGCAACTACAGAGGTCAGCAA 59.306 47.619 0.00 0.00 0.00 3.91
6272 9137 1.801178 GCAACTACAGAGGTCAGCAAC 59.199 52.381 0.00 0.00 0.00 4.17
6292 9187 5.465390 GCAACTACACACTAGAAACACATCA 59.535 40.000 0.00 0.00 0.00 3.07
6293 9188 6.346919 GCAACTACACACTAGAAACACATCAG 60.347 42.308 0.00 0.00 0.00 2.90
6294 9189 5.784177 ACTACACACTAGAAACACATCAGG 58.216 41.667 0.00 0.00 0.00 3.86
6295 9190 4.955811 ACACACTAGAAACACATCAGGA 57.044 40.909 0.00 0.00 0.00 3.86
6296 9191 5.489792 ACACACTAGAAACACATCAGGAT 57.510 39.130 0.00 0.00 0.00 3.24
6297 9192 5.482908 ACACACTAGAAACACATCAGGATC 58.517 41.667 0.00 0.00 0.00 3.36
6298 9193 5.247110 ACACACTAGAAACACATCAGGATCT 59.753 40.000 0.00 0.00 0.00 2.75
6299 9194 5.809562 CACACTAGAAACACATCAGGATCTC 59.190 44.000 0.00 0.00 0.00 2.75
6300 9195 5.039984 CACTAGAAACACATCAGGATCTCG 58.960 45.833 0.00 0.00 0.00 4.04
6301 9196 4.950475 ACTAGAAACACATCAGGATCTCGA 59.050 41.667 0.00 0.00 0.00 4.04
6302 9197 4.808414 AGAAACACATCAGGATCTCGAA 57.192 40.909 0.00 0.00 0.00 3.71
6303 9198 5.152623 AGAAACACATCAGGATCTCGAAA 57.847 39.130 0.00 0.00 0.00 3.46
6304 9199 5.738909 AGAAACACATCAGGATCTCGAAAT 58.261 37.500 0.00 0.00 0.00 2.17
6305 9200 6.878317 AGAAACACATCAGGATCTCGAAATA 58.122 36.000 0.00 0.00 0.00 1.40
6306 9201 7.331026 AGAAACACATCAGGATCTCGAAATAA 58.669 34.615 0.00 0.00 0.00 1.40
6307 9202 7.493971 AGAAACACATCAGGATCTCGAAATAAG 59.506 37.037 0.00 0.00 0.00 1.73
6308 9203 5.053145 ACACATCAGGATCTCGAAATAAGC 58.947 41.667 0.00 0.00 0.00 3.09
6309 9204 4.149571 CACATCAGGATCTCGAAATAAGCG 59.850 45.833 0.00 0.00 0.00 4.68
6310 9205 2.743938 TCAGGATCTCGAAATAAGCGC 58.256 47.619 0.00 0.00 0.00 5.92
6311 9206 2.362397 TCAGGATCTCGAAATAAGCGCT 59.638 45.455 2.64 2.64 0.00 5.92
6312 9207 2.474359 CAGGATCTCGAAATAAGCGCTG 59.526 50.000 12.58 0.00 0.00 5.18
6313 9208 2.101582 AGGATCTCGAAATAAGCGCTGT 59.898 45.455 12.58 3.70 0.00 4.40
6314 9209 2.866762 GGATCTCGAAATAAGCGCTGTT 59.133 45.455 12.58 6.58 0.00 3.16
6315 9210 3.060205 GGATCTCGAAATAAGCGCTGTTC 60.060 47.826 12.58 14.41 0.00 3.18
6316 9211 3.232213 TCTCGAAATAAGCGCTGTTCT 57.768 42.857 12.58 0.00 0.00 3.01
6317 9212 2.923655 TCTCGAAATAAGCGCTGTTCTG 59.076 45.455 12.58 11.48 0.00 3.02
6318 9213 2.923655 CTCGAAATAAGCGCTGTTCTGA 59.076 45.455 12.58 14.65 0.00 3.27
6319 9214 3.322369 TCGAAATAAGCGCTGTTCTGAA 58.678 40.909 12.58 1.43 0.00 3.02
6320 9215 3.932710 TCGAAATAAGCGCTGTTCTGAAT 59.067 39.130 12.58 0.00 0.00 2.57
6321 9216 4.391830 TCGAAATAAGCGCTGTTCTGAATT 59.608 37.500 12.58 0.00 0.00 2.17
6322 9217 4.493350 CGAAATAAGCGCTGTTCTGAATTG 59.507 41.667 12.58 0.00 0.00 2.32
6323 9218 5.627499 AAATAAGCGCTGTTCTGAATTGA 57.373 34.783 12.58 0.00 0.00 2.57
6324 9219 5.627499 AATAAGCGCTGTTCTGAATTGAA 57.373 34.783 12.58 0.00 0.00 2.69
6325 9220 3.988379 AAGCGCTGTTCTGAATTGAAA 57.012 38.095 12.58 0.00 0.00 2.69
6326 9221 3.988379 AGCGCTGTTCTGAATTGAAAA 57.012 38.095 10.39 0.00 0.00 2.29
6327 9222 4.305989 AGCGCTGTTCTGAATTGAAAAA 57.694 36.364 10.39 0.00 0.00 1.94
6345 9240 4.326504 AAAAAGACCTTTGATGCACCTG 57.673 40.909 0.00 0.00 32.36 4.00
6346 9241 2.957402 AAGACCTTTGATGCACCTGA 57.043 45.000 0.00 0.00 0.00 3.86
6347 9242 2.957402 AGACCTTTGATGCACCTGAA 57.043 45.000 0.00 0.00 0.00 3.02
6348 9243 2.787994 AGACCTTTGATGCACCTGAAG 58.212 47.619 0.00 0.00 0.00 3.02
6349 9244 2.373169 AGACCTTTGATGCACCTGAAGA 59.627 45.455 0.00 0.00 0.00 2.87
6350 9245 3.009916 AGACCTTTGATGCACCTGAAGAT 59.990 43.478 0.00 0.00 0.00 2.40
6351 9246 3.350833 ACCTTTGATGCACCTGAAGATC 58.649 45.455 0.00 0.00 0.00 2.75
6352 9247 3.245016 ACCTTTGATGCACCTGAAGATCA 60.245 43.478 0.00 0.00 0.00 2.92
6353 9248 3.377485 CCTTTGATGCACCTGAAGATCAG 59.623 47.826 0.00 0.32 43.91 2.90
6371 9266 9.915629 GAAGATCAGGTAGTGTACAATATAAGG 57.084 37.037 6.28 0.00 0.00 2.69
6372 9267 9.656323 AAGATCAGGTAGTGTACAATATAAGGA 57.344 33.333 6.28 3.36 0.00 3.36
6373 9268 9.656323 AGATCAGGTAGTGTACAATATAAGGAA 57.344 33.333 6.28 0.00 0.00 3.36
6374 9269 9.915629 GATCAGGTAGTGTACAATATAAGGAAG 57.084 37.037 6.28 0.00 0.00 3.46
6375 9270 9.656323 ATCAGGTAGTGTACAATATAAGGAAGA 57.344 33.333 6.28 0.00 0.00 2.87
6376 9271 9.483489 TCAGGTAGTGTACAATATAAGGAAGAA 57.517 33.333 6.28 0.00 0.00 2.52
6377 9272 9.530633 CAGGTAGTGTACAATATAAGGAAGAAC 57.469 37.037 6.28 0.00 0.00 3.01
6378 9273 9.490083 AGGTAGTGTACAATATAAGGAAGAACT 57.510 33.333 6.28 0.00 0.00 3.01
6379 9274 9.747293 GGTAGTGTACAATATAAGGAAGAACTC 57.253 37.037 6.28 0.00 0.00 3.01
6382 9277 7.982354 AGTGTACAATATAAGGAAGAACTCTGC 59.018 37.037 0.00 0.00 0.00 4.26
6383 9278 7.764443 GTGTACAATATAAGGAAGAACTCTGCA 59.236 37.037 0.00 0.00 0.00 4.41
6384 9279 7.981789 TGTACAATATAAGGAAGAACTCTGCAG 59.018 37.037 7.63 7.63 0.00 4.41
6385 9280 6.951971 ACAATATAAGGAAGAACTCTGCAGT 58.048 36.000 14.67 0.00 0.00 4.40
6386 9281 7.044798 ACAATATAAGGAAGAACTCTGCAGTC 58.955 38.462 14.67 3.95 29.93 3.51
6387 9282 7.093112 ACAATATAAGGAAGAACTCTGCAGTCT 60.093 37.037 14.67 6.55 29.93 3.24
6388 9283 3.399440 AAGGAAGAACTCTGCAGTCTG 57.601 47.619 14.67 8.01 29.93 3.51
6389 9284 2.603021 AGGAAGAACTCTGCAGTCTGA 58.397 47.619 14.67 0.00 29.93 3.27
6390 9285 2.968574 AGGAAGAACTCTGCAGTCTGAA 59.031 45.455 14.67 0.00 29.93 3.02
6391 9286 3.063485 GGAAGAACTCTGCAGTCTGAAC 58.937 50.000 14.67 5.26 29.93 3.18
6392 9287 3.244044 GGAAGAACTCTGCAGTCTGAACT 60.244 47.826 14.67 4.53 35.60 3.01
6403 9298 3.940209 AGTCTGAACTGAAGCAGAGAG 57.060 47.619 0.82 0.00 41.42 3.20
6404 9299 3.495331 AGTCTGAACTGAAGCAGAGAGA 58.505 45.455 0.82 0.00 41.42 3.10
6405 9300 3.255642 AGTCTGAACTGAAGCAGAGAGAC 59.744 47.826 0.82 8.67 41.42 3.36
6406 9301 2.227626 TCTGAACTGAAGCAGAGAGACG 59.772 50.000 0.82 0.00 36.31 4.18
6407 9302 1.957177 TGAACTGAAGCAGAGAGACGT 59.043 47.619 0.82 0.00 35.18 4.34
6408 9303 3.146847 TGAACTGAAGCAGAGAGACGTA 58.853 45.455 0.82 0.00 35.18 3.57
6409 9304 3.568430 TGAACTGAAGCAGAGAGACGTAA 59.432 43.478 0.82 0.00 35.18 3.18
6410 9305 3.840890 ACTGAAGCAGAGAGACGTAAG 57.159 47.619 0.82 0.00 38.20 2.34
6411 9306 3.150767 ACTGAAGCAGAGAGACGTAAGT 58.849 45.455 0.82 0.00 44.63 2.24
6412 9307 4.325119 ACTGAAGCAGAGAGACGTAAGTA 58.675 43.478 0.82 0.00 42.92 2.24
6413 9308 4.760715 ACTGAAGCAGAGAGACGTAAGTAA 59.239 41.667 0.82 0.00 42.92 2.24
6414 9309 5.416326 ACTGAAGCAGAGAGACGTAAGTAAT 59.584 40.000 0.82 0.00 42.92 1.89
6415 9310 5.968848 CTGAAGCAGAGAGACGTAAGTAATC 59.031 44.000 0.00 0.00 42.72 1.75
6416 9311 6.403746 CTGAAGCAGAGAGACGTAAGTAATCA 60.404 42.308 0.00 0.00 42.72 2.57
6417 9312 8.148448 CTGAAGCAGAGAGACGTAAGTAATCAG 61.148 44.444 0.00 0.00 42.72 2.90
6452 9347 8.723311 AGATTTCTTATAGTACTCGGAATCTCG 58.277 37.037 0.00 0.00 0.00 4.04
6453 9348 6.798315 TTCTTATAGTACTCGGAATCTCGG 57.202 41.667 0.00 0.00 0.00 4.63
6454 9349 6.106648 TCTTATAGTACTCGGAATCTCGGA 57.893 41.667 0.00 0.00 0.00 4.55
6455 9350 6.709281 TCTTATAGTACTCGGAATCTCGGAT 58.291 40.000 0.00 0.00 0.00 4.18
6456 9351 7.166851 TCTTATAGTACTCGGAATCTCGGATT 58.833 38.462 0.00 0.00 0.00 3.01
6457 9352 5.883503 ATAGTACTCGGAATCTCGGATTC 57.116 43.478 14.62 14.62 0.00 2.52
6458 9353 3.552875 AGTACTCGGAATCTCGGATTCA 58.447 45.455 20.84 7.35 0.00 2.57
6459 9354 4.145807 AGTACTCGGAATCTCGGATTCAT 58.854 43.478 20.84 10.55 0.00 2.57
6460 9355 4.585162 AGTACTCGGAATCTCGGATTCATT 59.415 41.667 20.84 9.52 0.00 2.57
6461 9356 5.768662 AGTACTCGGAATCTCGGATTCATTA 59.231 40.000 20.84 9.83 0.00 1.90
6462 9357 5.127693 ACTCGGAATCTCGGATTCATTAG 57.872 43.478 20.84 16.99 0.00 1.73
6463 9358 4.585162 ACTCGGAATCTCGGATTCATTAGT 59.415 41.667 20.84 17.41 0.00 2.24
6464 9359 4.871513 TCGGAATCTCGGATTCATTAGTG 58.128 43.478 20.84 8.90 0.00 2.74
6465 9360 3.430218 CGGAATCTCGGATTCATTAGTGC 59.570 47.826 20.84 7.40 0.00 4.40
6466 9361 4.636249 GGAATCTCGGATTCATTAGTGCT 58.364 43.478 20.84 0.00 0.00 4.40
6467 9362 5.564848 CGGAATCTCGGATTCATTAGTGCTA 60.565 44.000 20.84 0.00 0.00 3.49
6468 9363 5.866633 GGAATCTCGGATTCATTAGTGCTAG 59.133 44.000 20.84 0.00 0.00 3.42
6469 9364 6.412362 AATCTCGGATTCATTAGTGCTAGT 57.588 37.500 0.00 0.00 0.00 2.57
6470 9365 5.854010 TCTCGGATTCATTAGTGCTAGTT 57.146 39.130 0.00 0.00 0.00 2.24
6471 9366 5.592054 TCTCGGATTCATTAGTGCTAGTTG 58.408 41.667 0.00 0.00 0.00 3.16
6472 9367 4.693283 TCGGATTCATTAGTGCTAGTTGG 58.307 43.478 0.00 0.00 0.00 3.77
6473 9368 4.404394 TCGGATTCATTAGTGCTAGTTGGA 59.596 41.667 0.00 0.00 0.00 3.53
6474 9369 5.105106 TCGGATTCATTAGTGCTAGTTGGAA 60.105 40.000 0.00 0.00 0.00 3.53
6475 9370 5.584649 CGGATTCATTAGTGCTAGTTGGAAA 59.415 40.000 0.00 0.00 0.00 3.13
6476 9371 6.238211 CGGATTCATTAGTGCTAGTTGGAAAG 60.238 42.308 0.00 0.00 0.00 2.62
6477 9372 6.823689 GGATTCATTAGTGCTAGTTGGAAAGA 59.176 38.462 0.00 0.00 0.00 2.52
6478 9373 7.500559 GGATTCATTAGTGCTAGTTGGAAAGAT 59.499 37.037 0.00 0.00 0.00 2.40
6479 9374 7.615582 TTCATTAGTGCTAGTTGGAAAGATG 57.384 36.000 0.00 0.00 0.00 2.90
6480 9375 6.115446 TCATTAGTGCTAGTTGGAAAGATGG 58.885 40.000 0.00 0.00 0.00 3.51
6481 9376 5.755409 TTAGTGCTAGTTGGAAAGATGGA 57.245 39.130 0.00 0.00 0.00 3.41
6482 9377 4.640771 AGTGCTAGTTGGAAAGATGGAA 57.359 40.909 0.00 0.00 0.00 3.53
6483 9378 4.985538 AGTGCTAGTTGGAAAGATGGAAA 58.014 39.130 0.00 0.00 0.00 3.13
6484 9379 5.574188 AGTGCTAGTTGGAAAGATGGAAAT 58.426 37.500 0.00 0.00 0.00 2.17
6485 9380 6.721318 AGTGCTAGTTGGAAAGATGGAAATA 58.279 36.000 0.00 0.00 0.00 1.40
6486 9381 7.349598 AGTGCTAGTTGGAAAGATGGAAATAT 58.650 34.615 0.00 0.00 0.00 1.28
6487 9382 7.836183 AGTGCTAGTTGGAAAGATGGAAATATT 59.164 33.333 0.00 0.00 0.00 1.28
6488 9383 8.131731 GTGCTAGTTGGAAAGATGGAAATATTC 58.868 37.037 0.00 0.00 0.00 1.75
6489 9384 7.833682 TGCTAGTTGGAAAGATGGAAATATTCA 59.166 33.333 0.00 0.00 0.00 2.57
6490 9385 8.854117 GCTAGTTGGAAAGATGGAAATATTCAT 58.146 33.333 0.00 0.00 0.00 2.57
6512 9407 8.067751 TCATCTTATACTCGGATTCATTAGGG 57.932 38.462 0.00 0.00 0.00 3.53
6513 9408 6.282199 TCTTATACTCGGATTCATTAGGGC 57.718 41.667 0.00 0.00 0.00 5.19
6514 9409 3.594603 ATACTCGGATTCATTAGGGCG 57.405 47.619 0.00 0.00 0.00 6.13
6515 9410 0.249911 ACTCGGATTCATTAGGGCGC 60.250 55.000 0.00 0.00 0.00 6.53
6516 9411 1.284982 CTCGGATTCATTAGGGCGCG 61.285 60.000 0.00 0.00 0.00 6.86
6517 9412 1.594293 CGGATTCATTAGGGCGCGT 60.594 57.895 8.43 0.00 0.00 6.01
6518 9413 1.157870 CGGATTCATTAGGGCGCGTT 61.158 55.000 8.43 0.00 0.00 4.84
6519 9414 1.021968 GGATTCATTAGGGCGCGTTT 58.978 50.000 8.43 0.00 0.00 3.60
6520 9415 1.404035 GGATTCATTAGGGCGCGTTTT 59.596 47.619 8.43 0.00 0.00 2.43
6521 9416 2.614983 GGATTCATTAGGGCGCGTTTTA 59.385 45.455 8.43 0.00 0.00 1.52
6522 9417 3.303791 GGATTCATTAGGGCGCGTTTTAG 60.304 47.826 8.43 0.00 0.00 1.85
6523 9418 1.011333 TCATTAGGGCGCGTTTTAGC 58.989 50.000 8.43 0.00 0.00 3.09
6530 9425 3.419759 CGCGTTTTAGCCGTGCCT 61.420 61.111 0.00 0.00 0.00 4.75
6531 9426 2.175811 GCGTTTTAGCCGTGCCTG 59.824 61.111 0.00 0.00 0.00 4.85
6532 9427 2.867472 CGTTTTAGCCGTGCCTGG 59.133 61.111 0.00 0.00 0.00 4.45
6533 9428 2.686816 CGTTTTAGCCGTGCCTGGG 61.687 63.158 0.00 0.00 0.00 4.45
6555 9450 3.781341 CGACTCGGATTCAAAAACGAA 57.219 42.857 0.00 0.00 34.70 3.85
6556 9451 3.722123 CGACTCGGATTCAAAAACGAAG 58.278 45.455 0.00 0.00 34.70 3.79
6557 9452 3.427528 CGACTCGGATTCAAAAACGAAGA 59.572 43.478 0.00 0.00 34.70 2.87
6558 9453 4.084745 CGACTCGGATTCAAAAACGAAGAA 60.085 41.667 0.00 0.00 34.70 2.52
6559 9454 5.557514 CGACTCGGATTCAAAAACGAAGAAA 60.558 40.000 0.00 0.00 34.70 2.52
6560 9455 5.748592 ACTCGGATTCAAAAACGAAGAAAG 58.251 37.500 0.00 0.00 34.70 2.62
6561 9456 4.533222 TCGGATTCAAAAACGAAGAAAGC 58.467 39.130 0.00 0.00 31.79 3.51
6562 9457 3.357823 CGGATTCAAAAACGAAGAAAGCG 59.642 43.478 0.00 0.00 0.00 4.68
6563 9458 3.119628 GGATTCAAAAACGAAGAAAGCGC 59.880 43.478 0.00 0.00 0.00 5.92
6564 9459 1.737249 TCAAAAACGAAGAAAGCGCG 58.263 45.000 0.00 0.00 0.00 6.86
6565 9460 0.156651 CAAAAACGAAGAAAGCGCGC 59.843 50.000 26.66 26.66 0.00 6.86
6566 9461 1.259544 AAAAACGAAGAAAGCGCGCG 61.260 50.000 28.44 28.44 0.00 6.86
6567 9462 2.369477 AAAACGAAGAAAGCGCGCGT 62.369 50.000 32.35 21.73 36.68 6.01
6568 9463 2.369477 AAACGAAGAAAGCGCGCGTT 62.369 50.000 31.53 31.53 45.71 4.84
6569 9464 2.127758 CGAAGAAAGCGCGCGTTT 60.128 55.556 31.54 29.38 0.00 3.60
6570 9465 1.721133 CGAAGAAAGCGCGCGTTTT 60.721 52.632 38.34 38.34 0.00 2.43
6571 9466 0.449831 CGAAGAAAGCGCGCGTTTTA 60.450 50.000 37.89 0.00 0.00 1.52
6572 9467 1.239145 GAAGAAAGCGCGCGTTTTAG 58.761 50.000 37.89 9.05 0.00 1.85
6573 9468 0.724785 AAGAAAGCGCGCGTTTTAGC 60.725 50.000 37.89 27.74 0.00 3.09
6581 9476 4.670606 GCGTTTTAGCGATGCCTG 57.329 55.556 0.00 0.00 0.00 4.85
6582 9477 1.062525 GCGTTTTAGCGATGCCTGG 59.937 57.895 0.00 0.00 0.00 4.45
6583 9478 1.721487 CGTTTTAGCGATGCCTGGG 59.279 57.895 0.00 0.00 0.00 4.45
6584 9479 1.433471 GTTTTAGCGATGCCTGGGC 59.567 57.895 4.43 4.43 42.35 5.36
6585 9480 1.752694 TTTTAGCGATGCCTGGGCC 60.753 57.895 9.28 0.00 41.09 5.80
6586 9481 4.545706 TTAGCGATGCCTGGGCCG 62.546 66.667 9.28 7.46 41.09 6.13
6590 9485 4.899239 CGATGCCTGGGCCGACTC 62.899 72.222 9.28 0.68 41.09 3.36
6591 9486 4.899239 GATGCCTGGGCCGACTCG 62.899 72.222 9.28 0.00 41.09 4.18
6605 9500 1.588404 CGACTCGGATTCAAACCATCG 59.412 52.381 0.00 0.00 0.00 3.84
6606 9501 2.734175 CGACTCGGATTCAAACCATCGA 60.734 50.000 0.00 0.00 32.47 3.59
6607 9502 2.603560 GACTCGGATTCAAACCATCGAC 59.396 50.000 0.00 0.00 0.00 4.20
6608 9503 2.028476 ACTCGGATTCAAACCATCGACA 60.028 45.455 0.00 0.00 0.00 4.35
6609 9504 2.604914 CTCGGATTCAAACCATCGACAG 59.395 50.000 0.00 0.00 0.00 3.51
6610 9505 2.232696 TCGGATTCAAACCATCGACAGA 59.767 45.455 0.00 0.00 0.00 3.41
6611 9506 3.118775 TCGGATTCAAACCATCGACAGAT 60.119 43.478 0.00 0.00 37.65 2.90
6612 9507 4.098807 TCGGATTCAAACCATCGACAGATA 59.901 41.667 0.00 0.00 34.85 1.98
6613 9508 4.808895 CGGATTCAAACCATCGACAGATAA 59.191 41.667 0.00 0.00 34.85 1.75
6614 9509 5.050769 CGGATTCAAACCATCGACAGATAAG 60.051 44.000 0.00 0.00 34.85 1.73
6615 9510 6.049149 GGATTCAAACCATCGACAGATAAGA 58.951 40.000 0.00 0.00 34.85 2.10
6616 9511 6.708054 GGATTCAAACCATCGACAGATAAGAT 59.292 38.462 0.00 0.00 34.85 2.40
6617 9512 7.872993 GGATTCAAACCATCGACAGATAAGATA 59.127 37.037 0.00 0.00 34.85 1.98
6618 9513 9.429359 GATTCAAACCATCGACAGATAAGATAT 57.571 33.333 0.00 0.00 34.85 1.63
6619 9514 9.784531 ATTCAAACCATCGACAGATAAGATATT 57.215 29.630 0.00 0.00 34.85 1.28
6620 9515 8.593492 TCAAACCATCGACAGATAAGATATTG 57.407 34.615 0.00 0.00 34.85 1.90
6621 9516 7.171508 TCAAACCATCGACAGATAAGATATTGC 59.828 37.037 0.00 0.00 34.85 3.56
6622 9517 5.482908 ACCATCGACAGATAAGATATTGCC 58.517 41.667 0.00 0.00 34.85 4.52
6629 9524 2.639839 AGATAAGATATTGCCGCCCTGT 59.360 45.455 0.00 0.00 0.00 4.00
6681 9576 1.821061 CTCCTCCCCAATCCCGATCG 61.821 65.000 8.51 8.51 0.00 3.69
6688 9583 1.337260 CCCAATCCCGATCGATCTGAC 60.337 57.143 22.43 0.00 0.00 3.51
6689 9584 1.337260 CCAATCCCGATCGATCTGACC 60.337 57.143 22.43 0.00 0.00 4.02
6690 9585 1.615883 CAATCCCGATCGATCTGACCT 59.384 52.381 22.43 7.82 0.00 3.85
6693 9588 0.598680 CCCGATCGATCTGACCTTGC 60.599 60.000 22.43 0.00 0.00 4.01
6694 9589 0.598680 CCGATCGATCTGACCTTGCC 60.599 60.000 22.43 0.00 0.00 4.52
6695 9590 0.598680 CGATCGATCTGACCTTGCCC 60.599 60.000 22.43 0.00 0.00 5.36
6711 9606 2.506061 CCCTCTGATCGGCCTCCAG 61.506 68.421 0.00 5.34 0.00 3.86
6882 15318 2.824041 CCTTGATGGCGAACCCCG 60.824 66.667 0.00 0.00 42.21 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.063006 CCTCAAACATGCGCGGATG 59.937 57.895 34.82 34.82 0.00 3.51
18 19 2.114670 CCCTCAAACATGCGCGGAT 61.115 57.895 7.52 7.52 0.00 4.18
19 20 2.745884 CCCTCAAACATGCGCGGA 60.746 61.111 8.83 5.00 0.00 5.54
21 22 4.481112 GCCCCTCAAACATGCGCG 62.481 66.667 0.00 0.00 0.00 6.86
22 23 4.133796 GGCCCCTCAAACATGCGC 62.134 66.667 0.00 0.00 0.00 6.09
24 25 1.708341 ATATGGCCCCTCAAACATGC 58.292 50.000 0.00 0.00 0.00 4.06
26 27 3.706086 GTCAAATATGGCCCCTCAAACAT 59.294 43.478 0.00 0.00 0.00 2.71
27 28 3.096092 GTCAAATATGGCCCCTCAAACA 58.904 45.455 0.00 0.00 0.00 2.83
30 31 3.686227 ATGTCAAATATGGCCCCTCAA 57.314 42.857 0.00 0.00 0.00 3.02
32 33 4.273318 GGATATGTCAAATATGGCCCCTC 58.727 47.826 0.00 0.00 0.00 4.30
33 34 3.011708 GGGATATGTCAAATATGGCCCCT 59.988 47.826 0.00 0.00 0.00 4.79
35 36 4.046286 TGGGATATGTCAAATATGGCCC 57.954 45.455 0.00 0.00 0.00 5.80
36 37 5.481473 ACATTGGGATATGTCAAATATGGCC 59.519 40.000 0.00 0.00 33.58 5.36
37 38 6.594788 ACATTGGGATATGTCAAATATGGC 57.405 37.500 0.00 0.00 33.58 4.40
40 41 9.182214 GCATCTACATTGGGATATGTCAAATAT 57.818 33.333 0.00 0.00 39.39 1.28
41 42 8.385491 AGCATCTACATTGGGATATGTCAAATA 58.615 33.333 0.00 0.00 39.39 1.40
42 43 7.236529 AGCATCTACATTGGGATATGTCAAAT 58.763 34.615 0.00 0.00 39.39 2.32
43 44 6.604171 AGCATCTACATTGGGATATGTCAAA 58.396 36.000 0.00 0.00 39.39 2.69
44 45 6.191657 AGCATCTACATTGGGATATGTCAA 57.808 37.500 0.00 0.00 39.39 3.18
45 46 5.798132 GAGCATCTACATTGGGATATGTCA 58.202 41.667 0.00 0.00 39.39 3.58
56 57 8.648843 CGTATGACGGTCAGAGCATCTACATT 62.649 46.154 16.84 0.00 40.39 2.71
57 58 7.270149 CGTATGACGGTCAGAGCATCTACAT 62.270 48.000 16.84 0.00 40.39 2.29
58 59 6.032485 CGTATGACGGTCAGAGCATCTACA 62.032 50.000 16.84 0.00 40.39 2.74
60 61 2.548480 CGTATGACGGTCAGAGCATCTA 59.452 50.000 16.84 0.00 40.39 1.98
61 62 1.335182 CGTATGACGGTCAGAGCATCT 59.665 52.381 16.84 0.22 42.37 2.90
63 64 3.946950 CGTATGACGGTCAGAGCAT 57.053 52.632 16.84 1.70 38.08 3.79
74 75 1.871080 CTTGAGCCATCCCGTATGAC 58.129 55.000 0.00 0.00 37.86 3.06
75 76 0.106708 GCTTGAGCCATCCCGTATGA 59.893 55.000 0.00 0.00 37.86 2.15
77 78 0.107456 CAGCTTGAGCCATCCCGTAT 59.893 55.000 0.00 0.00 43.38 3.06
78 79 0.975556 TCAGCTTGAGCCATCCCGTA 60.976 55.000 0.00 0.00 43.38 4.02
79 80 1.841302 TTCAGCTTGAGCCATCCCGT 61.841 55.000 0.00 0.00 43.38 5.28
80 81 1.078214 TTCAGCTTGAGCCATCCCG 60.078 57.895 0.00 0.00 43.38 5.14
81 82 0.322816 TGTTCAGCTTGAGCCATCCC 60.323 55.000 0.00 0.00 43.38 3.85
82 83 1.760192 ATGTTCAGCTTGAGCCATCC 58.240 50.000 0.00 0.00 43.38 3.51
83 84 2.751259 TCAATGTTCAGCTTGAGCCATC 59.249 45.455 0.00 0.00 43.38 3.51
84 85 2.799017 TCAATGTTCAGCTTGAGCCAT 58.201 42.857 0.00 0.00 43.38 4.40
85 86 2.275134 TCAATGTTCAGCTTGAGCCA 57.725 45.000 0.00 0.00 43.38 4.75
86 87 2.734492 GCATCAATGTTCAGCTTGAGCC 60.734 50.000 0.00 0.00 43.38 4.70
89 90 3.613193 GCTTGCATCAATGTTCAGCTTGA 60.613 43.478 0.00 0.00 35.95 3.02
90 91 2.666508 GCTTGCATCAATGTTCAGCTTG 59.333 45.455 0.00 0.00 0.00 4.01
91 92 2.561419 AGCTTGCATCAATGTTCAGCTT 59.439 40.909 0.00 0.00 34.86 3.74
92 93 2.168496 AGCTTGCATCAATGTTCAGCT 58.832 42.857 0.00 0.00 34.16 4.24
95 96 6.689554 TGAATAAAGCTTGCATCAATGTTCA 58.310 32.000 0.00 0.00 0.00 3.18
96 97 7.543172 TCTTGAATAAAGCTTGCATCAATGTTC 59.457 33.333 16.67 7.67 35.69 3.18
99 100 6.475727 CCTCTTGAATAAAGCTTGCATCAATG 59.524 38.462 16.67 13.38 35.69 2.82
100 101 6.570692 CCTCTTGAATAAAGCTTGCATCAAT 58.429 36.000 16.67 0.00 35.69 2.57
120 121 2.097825 GATGCTCCATGTTTTGCCTCT 58.902 47.619 0.00 0.00 0.00 3.69
124 125 0.179129 CCCGATGCTCCATGTTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
129 130 4.195334 GCCCCCGATGCTCCATGT 62.195 66.667 0.00 0.00 0.00 3.21
138 139 1.915078 CTTGGAGAACAGCCCCCGAT 61.915 60.000 0.00 0.00 0.00 4.18
140 141 1.915078 ATCTTGGAGAACAGCCCCCG 61.915 60.000 0.00 0.00 0.00 5.73
147 148 5.222027 TGACCCATTTGTATCTTGGAGAACA 60.222 40.000 0.00 0.00 31.94 3.18
155 156 7.437713 TCTATCACTGACCCATTTGTATCTT 57.562 36.000 0.00 0.00 0.00 2.40
169 170 5.046376 TGTTCCAAGCAGATTCTATCACTGA 60.046 40.000 0.00 0.00 34.07 3.41
171 172 5.181748 GTGTTCCAAGCAGATTCTATCACT 58.818 41.667 0.00 0.00 0.00 3.41
177 178 3.760684 GGATTGTGTTCCAAGCAGATTCT 59.239 43.478 0.00 0.00 41.28 2.40
208 209 0.966179 TCAGTCGCCTCAGCACTAAA 59.034 50.000 0.00 0.00 39.83 1.85
209 210 0.966179 TTCAGTCGCCTCAGCACTAA 59.034 50.000 0.00 0.00 39.83 2.24
223 224 4.517285 TCAAGACAAGCTTCAGTTTCAGT 58.483 39.130 0.00 0.00 33.60 3.41
229 230 2.225467 GCCTTCAAGACAAGCTTCAGT 58.775 47.619 0.00 0.00 33.60 3.41
249 250 0.458669 GCTGCATGGTTCCTTGGATG 59.541 55.000 0.00 0.00 0.00 3.51
254 255 2.507058 TCTATGAGCTGCATGGTTCCTT 59.493 45.455 1.02 0.00 37.87 3.36
257 258 3.736720 TGATCTATGAGCTGCATGGTTC 58.263 45.455 1.02 2.63 37.87 3.62
258 259 3.741249 CTGATCTATGAGCTGCATGGTT 58.259 45.455 1.02 0.00 37.87 3.67
276 277 4.404394 TCGGTCTCAATAATTACCAGCTGA 59.596 41.667 17.39 0.00 32.04 4.26
278 279 4.406003 AGTCGGTCTCAATAATTACCAGCT 59.594 41.667 0.00 0.00 32.04 4.24
281 282 4.439057 GCAGTCGGTCTCAATAATTACCA 58.561 43.478 0.00 0.00 32.04 3.25
282 283 3.489785 CGCAGTCGGTCTCAATAATTACC 59.510 47.826 0.00 0.00 0.00 2.85
286 287 2.165641 TCACGCAGTCGGTCTCAATAAT 59.834 45.455 0.00 0.00 41.61 1.28
296 297 1.781555 GTGACATTCACGCAGTCGG 59.218 57.895 0.00 0.00 41.61 4.79
305 306 0.396435 AGTTGCCCGAGTGACATTCA 59.604 50.000 0.00 0.00 0.00 2.57
314 315 1.674221 CCTTGAAGAGAGTTGCCCGAG 60.674 57.143 0.00 0.00 0.00 4.63
318 319 2.568623 TTCCCTTGAAGAGAGTTGCC 57.431 50.000 0.00 0.00 0.00 4.52
319 320 6.382608 GTTAAATTCCCTTGAAGAGAGTTGC 58.617 40.000 0.00 0.00 33.05 4.17
323 324 5.488341 TCCGTTAAATTCCCTTGAAGAGAG 58.512 41.667 0.00 0.00 33.05 3.20
325 326 5.297029 GGATCCGTTAAATTCCCTTGAAGAG 59.703 44.000 0.00 0.00 33.05 2.85
344 345 2.754254 GTTGCCAACGGGGGATCC 60.754 66.667 1.92 1.92 36.59 3.36
349 350 1.472480 CTAATCAAGTTGCCAACGGGG 59.528 52.381 1.20 0.00 40.85 5.73
353 354 7.154656 AGAATTTTCCTAATCAAGTTGCCAAC 58.845 34.615 0.00 0.00 0.00 3.77
365 366 8.094548 GCCCAACAAACTTAGAATTTTCCTAAT 58.905 33.333 0.00 0.00 0.00 1.73
366 367 7.438564 GCCCAACAAACTTAGAATTTTCCTAA 58.561 34.615 0.00 0.00 0.00 2.69
371 372 5.622346 TGGCCCAACAAACTTAGAATTTT 57.378 34.783 0.00 0.00 0.00 1.82
378 379 2.091555 AGGAGTTGGCCCAACAAACTTA 60.092 45.455 27.49 0.00 45.66 2.24
379 380 1.119684 GGAGTTGGCCCAACAAACTT 58.880 50.000 27.49 7.21 45.66 2.66
386 387 2.397044 AAATCAAGGAGTTGGCCCAA 57.603 45.000 0.00 0.00 34.09 4.12
421 422 6.542370 GTGCAACCCTATAGCTATTTCTTGAA 59.458 38.462 12.39 1.14 0.00 2.69
434 435 2.224042 CGAGAGCATGTGCAACCCTATA 60.224 50.000 7.83 0.00 45.16 1.31
459 460 7.093902 CCTTTCTCACACTACTCTTACCATACA 60.094 40.741 0.00 0.00 0.00 2.29
460 461 7.259161 CCTTTCTCACACTACTCTTACCATAC 58.741 42.308 0.00 0.00 0.00 2.39
468 469 3.322254 CACACCCTTTCTCACACTACTCT 59.678 47.826 0.00 0.00 0.00 3.24
472 473 4.476297 TCTACACACCCTTTCTCACACTA 58.524 43.478 0.00 0.00 0.00 2.74
473 474 3.305720 TCTACACACCCTTTCTCACACT 58.694 45.455 0.00 0.00 0.00 3.55
480 481 3.927142 CGAGTCAATCTACACACCCTTTC 59.073 47.826 0.00 0.00 0.00 2.62
481 482 3.306780 CCGAGTCAATCTACACACCCTTT 60.307 47.826 0.00 0.00 0.00 3.11
492 493 1.668101 GGCCGAGACCGAGTCAATCT 61.668 60.000 6.78 0.00 38.22 2.40
496 497 3.062466 CAGGCCGAGACCGAGTCA 61.062 66.667 0.00 0.00 38.22 3.41
498 499 3.374402 CACAGGCCGAGACCGAGT 61.374 66.667 0.00 0.00 38.22 4.18
518 519 0.320683 TCATTGTCGACCAGCCACAG 60.321 55.000 14.12 0.00 0.00 3.66
521 522 1.271325 ACAATCATTGTCGACCAGCCA 60.271 47.619 14.12 0.00 40.56 4.75
523 524 4.332543 TCATTACAATCATTGTCGACCAGC 59.667 41.667 14.12 0.00 44.12 4.85
530 531 9.507280 CAACATAGGTTCATTACAATCATTGTC 57.493 33.333 6.21 0.00 39.02 3.18
586 587 6.307800 CCGCATCGATGTAATGTTTTCTTTTT 59.692 34.615 25.47 0.00 0.00 1.94
587 588 5.799936 CCGCATCGATGTAATGTTTTCTTTT 59.200 36.000 25.47 0.00 0.00 2.27
589 590 4.201910 CCCGCATCGATGTAATGTTTTCTT 60.202 41.667 25.47 0.00 0.00 2.52
590 591 3.312421 CCCGCATCGATGTAATGTTTTCT 59.688 43.478 25.47 0.00 0.00 2.52
591 592 3.617669 CCCGCATCGATGTAATGTTTTC 58.382 45.455 25.47 5.62 0.00 2.29
593 594 1.333619 GCCCGCATCGATGTAATGTTT 59.666 47.619 25.47 0.00 0.00 2.83
594 595 0.944386 GCCCGCATCGATGTAATGTT 59.056 50.000 25.47 0.00 0.00 2.71
595 596 0.884704 GGCCCGCATCGATGTAATGT 60.885 55.000 25.47 0.00 0.00 2.71
598 599 0.813610 CAAGGCCCGCATCGATGTAA 60.814 55.000 25.47 0.00 0.00 2.41
599 600 1.227527 CAAGGCCCGCATCGATGTA 60.228 57.895 25.47 0.00 0.00 2.29
600 601 2.514592 CAAGGCCCGCATCGATGT 60.515 61.111 25.47 2.59 0.00 3.06
607 608 3.884704 AAGAATGCCAAGGCCCGCA 62.885 57.895 11.76 11.76 41.09 5.69
608 609 2.649129 AAAGAATGCCAAGGCCCGC 61.649 57.895 8.89 0.00 41.09 6.13
609 610 1.216178 CAAAGAATGCCAAGGCCCG 59.784 57.895 8.89 0.00 41.09 6.13
619 620 2.053627 GCACTGGAAACGCAAAGAATG 58.946 47.619 0.00 0.00 0.00 2.67
620 621 1.956477 AGCACTGGAAACGCAAAGAAT 59.044 42.857 0.00 0.00 0.00 2.40
621 622 1.388547 AGCACTGGAAACGCAAAGAA 58.611 45.000 0.00 0.00 0.00 2.52
622 623 1.871039 GTAGCACTGGAAACGCAAAGA 59.129 47.619 0.00 0.00 0.00 2.52
623 624 1.601903 TGTAGCACTGGAAACGCAAAG 59.398 47.619 0.00 0.00 0.00 2.77
624 625 1.669604 TGTAGCACTGGAAACGCAAA 58.330 45.000 0.00 0.00 0.00 3.68
625 626 1.535028 CATGTAGCACTGGAAACGCAA 59.465 47.619 0.00 0.00 0.00 4.85
627 628 0.447801 CCATGTAGCACTGGAAACGC 59.552 55.000 0.00 0.00 34.24 4.84
628 629 2.093306 TCCATGTAGCACTGGAAACG 57.907 50.000 0.00 0.00 38.59 3.60
630 631 3.519107 TCAGATCCATGTAGCACTGGAAA 59.481 43.478 0.00 0.00 44.41 3.13
632 633 2.432146 GTCAGATCCATGTAGCACTGGA 59.568 50.000 0.00 0.00 45.27 3.86
633 634 2.800985 CGTCAGATCCATGTAGCACTGG 60.801 54.545 0.00 0.00 0.00 4.00
634 635 2.099756 TCGTCAGATCCATGTAGCACTG 59.900 50.000 0.00 0.00 0.00 3.66
635 636 2.360483 CTCGTCAGATCCATGTAGCACT 59.640 50.000 0.00 0.00 0.00 4.40
636 637 2.359214 TCTCGTCAGATCCATGTAGCAC 59.641 50.000 0.00 0.00 0.00 4.40
637 638 2.654863 TCTCGTCAGATCCATGTAGCA 58.345 47.619 0.00 0.00 0.00 3.49
638 639 3.717400 TTCTCGTCAGATCCATGTAGC 57.283 47.619 0.00 0.00 0.00 3.58
639 640 4.998788 TGTTTCTCGTCAGATCCATGTAG 58.001 43.478 0.00 0.00 0.00 2.74
640 641 5.127031 TCATGTTTCTCGTCAGATCCATGTA 59.873 40.000 0.00 0.00 37.84 2.29
641 642 3.961480 TGTTTCTCGTCAGATCCATGT 57.039 42.857 0.00 0.00 0.00 3.21
642 643 4.436332 TCATGTTTCTCGTCAGATCCATG 58.564 43.478 0.00 0.00 37.90 3.66
694 695 1.750399 ATCCCGTGTTGCTGGATGC 60.750 57.895 0.00 0.00 39.34 3.91
704 705 3.075005 CCCTCCGTCATCCCGTGT 61.075 66.667 0.00 0.00 0.00 4.49
792 794 3.441011 CTTCCTCCCCGCGCGTAAT 62.441 63.158 29.95 0.00 0.00 1.89
836 838 3.607310 CGAGATTCTACCGTTCGATCCTG 60.607 52.174 0.00 0.00 33.38 3.86
843 845 1.201343 GCAGCGAGATTCTACCGTTC 58.799 55.000 0.00 0.00 0.00 3.95
851 853 1.543941 CGTCCGATGCAGCGAGATTC 61.544 60.000 28.29 9.32 0.00 2.52
877 879 2.839098 CAGTTGGGCTGGTCCAGT 59.161 61.111 20.24 0.00 41.42 4.00
1430 1468 5.826586 ACTATCTGCAGTAGAATTGTCGAG 58.173 41.667 22.25 4.92 39.30 4.04
1498 1578 8.457261 GTTTCAGTTTTGATATCAGCTCTGAAT 58.543 33.333 28.15 7.36 36.80 2.57
1537 1631 6.094739 TCGCTCTGAAATCAGTAATTTTCG 57.905 37.500 10.06 5.31 44.12 3.46
1729 1910 4.122046 CCAGCACAGATTGTATGATCGAA 58.878 43.478 0.00 0.00 0.00 3.71
1732 1913 6.051717 ACTAACCAGCACAGATTGTATGATC 58.948 40.000 0.00 0.00 0.00 2.92
1799 2022 1.077930 CAGTGAGCACCCCCTCATG 60.078 63.158 0.00 0.00 43.19 3.07
1909 2373 9.683069 AATCATTTTGTAGCTTAAGTCAAACAG 57.317 29.630 16.15 13.10 31.07 3.16
1949 2452 8.686334 ACAAGGAAAAATCGTGCTTATATTGAT 58.314 29.630 0.00 0.00 0.00 2.57
1995 2510 9.582648 AACTTAACAAGGGTACATAACTTGAAT 57.417 29.630 19.13 12.48 43.13 2.57
3414 4098 3.790437 CCACCAGAGGCATCCGCT 61.790 66.667 0.00 0.00 38.60 5.52
3537 4224 6.831976 ACAGAGTCATAAGAAGTGGAAAACT 58.168 36.000 0.00 0.00 42.60 2.66
3538 4225 7.226720 TCAACAGAGTCATAAGAAGTGGAAAAC 59.773 37.037 0.00 0.00 0.00 2.43
3539 4226 7.279615 TCAACAGAGTCATAAGAAGTGGAAAA 58.720 34.615 0.00 0.00 0.00 2.29
3540 4227 6.826668 TCAACAGAGTCATAAGAAGTGGAAA 58.173 36.000 0.00 0.00 0.00 3.13
3541 4228 6.419484 TCAACAGAGTCATAAGAAGTGGAA 57.581 37.500 0.00 0.00 0.00 3.53
3542 4229 6.419484 TTCAACAGAGTCATAAGAAGTGGA 57.581 37.500 0.00 0.00 0.00 4.02
3626 4349 5.278512 CCAATATCGCAGAGTTCAGTAGCTA 60.279 44.000 0.00 0.00 43.63 3.32
3996 5078 5.890985 TGGATTTCATGTGGTTACTAATGGG 59.109 40.000 0.00 0.00 0.00 4.00
4419 5631 0.847373 TTAAGTCCACCAGGCAACCA 59.153 50.000 0.00 0.00 33.74 3.67
4670 6134 4.534794 TTGCATTCGTGCACATACATAG 57.465 40.909 18.64 0.00 45.32 2.23
4720 6185 7.410174 TCAATTATGATGTGGAACTAGGGTTT 58.590 34.615 0.00 0.00 38.04 3.27
5025 6546 3.642778 TACCCGTGCGCTCTTCTGC 62.643 63.158 9.73 0.00 0.00 4.26
5026 6547 1.517257 CTACCCGTGCGCTCTTCTG 60.517 63.158 9.73 0.00 0.00 3.02
5027 6548 2.711922 CCTACCCGTGCGCTCTTCT 61.712 63.158 9.73 0.00 0.00 2.85
5040 6598 0.464452 CTCGTTCCCATGACCCTACC 59.536 60.000 0.00 0.00 0.00 3.18
5385 7203 6.686484 AAAGAAGGAAAATAACCTGGCAAT 57.314 33.333 0.00 0.00 37.85 3.56
5508 7379 0.317479 CGACTTCATATCCGACCCCC 59.683 60.000 0.00 0.00 0.00 5.40
5513 7384 2.572290 TCTCAGCGACTTCATATCCGA 58.428 47.619 0.00 0.00 0.00 4.55
5610 7481 1.822990 CATTCAGGGTTCAGCATTGCT 59.177 47.619 5.03 5.03 40.77 3.91
5733 8418 4.270325 GCTGAACTCGTTATGGTTATGTCC 59.730 45.833 0.00 0.00 0.00 4.02
5772 8457 2.483013 CGGGCCTAGAATGATTCGAACA 60.483 50.000 0.84 1.02 34.02 3.18
5789 8474 3.081804 CCATTATATCAAACCTCCGGGC 58.918 50.000 0.00 0.00 35.63 6.13
5841 8569 5.122239 GCCCAAAATCCTTGCTTACATTTTC 59.878 40.000 0.00 0.00 0.00 2.29
5860 8589 1.950909 CCTGTGTCGTAAAAAGCCCAA 59.049 47.619 0.00 0.00 0.00 4.12
5936 8683 4.024641 GGTAGTTTTGGTACCACAGAAACG 60.025 45.833 24.75 0.00 39.94 3.60
5953 8708 9.232473 GAAAATAGGAAAATCAGTCTGGTAGTT 57.768 33.333 0.00 0.00 0.00 2.24
5954 8709 8.383175 TGAAAATAGGAAAATCAGTCTGGTAGT 58.617 33.333 0.00 0.00 0.00 2.73
5955 8710 8.792830 TGAAAATAGGAAAATCAGTCTGGTAG 57.207 34.615 0.00 0.00 0.00 3.18
5956 8711 9.581289 TTTGAAAATAGGAAAATCAGTCTGGTA 57.419 29.630 0.00 0.00 0.00 3.25
5957 8712 8.360390 GTTTGAAAATAGGAAAATCAGTCTGGT 58.640 33.333 0.00 0.00 0.00 4.00
5958 8713 8.359642 TGTTTGAAAATAGGAAAATCAGTCTGG 58.640 33.333 0.00 0.00 0.00 3.86
5959 8714 9.918630 ATGTTTGAAAATAGGAAAATCAGTCTG 57.081 29.630 0.00 0.00 0.00 3.51
5975 8730 9.713740 GCATGTTTGAATTACAATGTTTGAAAA 57.286 25.926 0.00 0.00 38.36 2.29
5976 8731 8.886719 TGCATGTTTGAATTACAATGTTTGAAA 58.113 25.926 0.00 0.00 38.36 2.69
5977 8732 8.429493 TGCATGTTTGAATTACAATGTTTGAA 57.571 26.923 0.00 0.00 38.36 2.69
5978 8733 8.429493 TTGCATGTTTGAATTACAATGTTTGA 57.571 26.923 0.00 0.00 38.36 2.69
5979 8734 9.108449 CATTGCATGTTTGAATTACAATGTTTG 57.892 29.630 0.00 0.00 38.56 2.93
6171 9022 4.188948 GACTTGAAGTCTGATTATGCGC 57.811 45.455 17.61 0.00 41.88 6.09
6269 9134 6.146184 CCTGATGTGTTTCTAGTGTGTAGTTG 59.854 42.308 0.00 0.00 0.00 3.16
6270 9135 6.041637 TCCTGATGTGTTTCTAGTGTGTAGTT 59.958 38.462 0.00 0.00 0.00 2.24
6271 9136 5.538813 TCCTGATGTGTTTCTAGTGTGTAGT 59.461 40.000 0.00 0.00 0.00 2.73
6272 9137 6.025749 TCCTGATGTGTTTCTAGTGTGTAG 57.974 41.667 0.00 0.00 0.00 2.74
6292 9187 2.101582 ACAGCGCTTATTTCGAGATCCT 59.898 45.455 7.50 0.00 0.00 3.24
6293 9188 2.474816 ACAGCGCTTATTTCGAGATCC 58.525 47.619 7.50 0.00 0.00 3.36
6294 9189 3.799420 AGAACAGCGCTTATTTCGAGATC 59.201 43.478 7.50 0.00 0.00 2.75
6295 9190 3.553511 CAGAACAGCGCTTATTTCGAGAT 59.446 43.478 7.50 0.00 0.00 2.75
6296 9191 2.923655 CAGAACAGCGCTTATTTCGAGA 59.076 45.455 7.50 0.00 0.00 4.04
6297 9192 2.923655 TCAGAACAGCGCTTATTTCGAG 59.076 45.455 7.50 9.37 0.00 4.04
6298 9193 2.954316 TCAGAACAGCGCTTATTTCGA 58.046 42.857 7.50 9.84 0.00 3.71
6299 9194 3.722555 TTCAGAACAGCGCTTATTTCG 57.277 42.857 7.50 7.76 0.00 3.46
6300 9195 5.631026 TCAATTCAGAACAGCGCTTATTTC 58.369 37.500 7.50 11.23 0.00 2.17
6301 9196 5.627499 TCAATTCAGAACAGCGCTTATTT 57.373 34.783 7.50 0.07 0.00 1.40
6302 9197 5.627499 TTCAATTCAGAACAGCGCTTATT 57.373 34.783 7.50 4.98 0.00 1.40
6303 9198 5.627499 TTTCAATTCAGAACAGCGCTTAT 57.373 34.783 7.50 0.00 0.00 1.73
6304 9199 5.431420 TTTTCAATTCAGAACAGCGCTTA 57.569 34.783 7.50 0.00 0.00 3.09
6305 9200 3.988379 TTTCAATTCAGAACAGCGCTT 57.012 38.095 7.50 0.00 0.00 4.68
6306 9201 3.988379 TTTTCAATTCAGAACAGCGCT 57.012 38.095 2.64 2.64 0.00 5.92
6324 9219 3.960102 TCAGGTGCATCAAAGGTCTTTTT 59.040 39.130 0.00 0.00 0.00 1.94
6325 9220 3.565307 TCAGGTGCATCAAAGGTCTTTT 58.435 40.909 0.00 0.00 0.00 2.27
6326 9221 3.228188 TCAGGTGCATCAAAGGTCTTT 57.772 42.857 0.00 0.00 0.00 2.52
6327 9222 2.957402 TCAGGTGCATCAAAGGTCTT 57.043 45.000 0.00 0.00 0.00 3.01
6328 9223 2.373169 TCTTCAGGTGCATCAAAGGTCT 59.627 45.455 0.00 0.00 0.00 3.85
6329 9224 2.783135 TCTTCAGGTGCATCAAAGGTC 58.217 47.619 0.00 0.00 0.00 3.85
6330 9225 2.957402 TCTTCAGGTGCATCAAAGGT 57.043 45.000 0.00 0.00 0.00 3.50
6331 9226 3.349927 TGATCTTCAGGTGCATCAAAGG 58.650 45.455 0.00 0.00 0.00 3.11
6332 9227 4.617808 CTGATCTTCAGGTGCATCAAAG 57.382 45.455 0.00 2.52 40.71 2.77
6345 9240 9.915629 CCTTATATTGTACACTACCTGATCTTC 57.084 37.037 0.00 0.00 0.00 2.87
6346 9241 9.656323 TCCTTATATTGTACACTACCTGATCTT 57.344 33.333 0.00 0.00 0.00 2.40
6347 9242 9.656323 TTCCTTATATTGTACACTACCTGATCT 57.344 33.333 0.00 0.00 0.00 2.75
6348 9243 9.915629 CTTCCTTATATTGTACACTACCTGATC 57.084 37.037 0.00 0.00 0.00 2.92
6349 9244 9.656323 TCTTCCTTATATTGTACACTACCTGAT 57.344 33.333 0.00 0.00 0.00 2.90
6350 9245 9.483489 TTCTTCCTTATATTGTACACTACCTGA 57.517 33.333 0.00 0.00 0.00 3.86
6351 9246 9.530633 GTTCTTCCTTATATTGTACACTACCTG 57.469 37.037 0.00 0.00 0.00 4.00
6352 9247 9.490083 AGTTCTTCCTTATATTGTACACTACCT 57.510 33.333 0.00 0.00 0.00 3.08
6353 9248 9.747293 GAGTTCTTCCTTATATTGTACACTACC 57.253 37.037 0.00 0.00 0.00 3.18
6356 9251 7.982354 GCAGAGTTCTTCCTTATATTGTACACT 59.018 37.037 0.00 0.00 0.00 3.55
6357 9252 7.764443 TGCAGAGTTCTTCCTTATATTGTACAC 59.236 37.037 0.00 0.00 0.00 2.90
6358 9253 7.847096 TGCAGAGTTCTTCCTTATATTGTACA 58.153 34.615 0.00 0.00 0.00 2.90
6359 9254 7.982354 ACTGCAGAGTTCTTCCTTATATTGTAC 59.018 37.037 23.35 0.00 0.00 2.90
6360 9255 8.079211 ACTGCAGAGTTCTTCCTTATATTGTA 57.921 34.615 23.35 0.00 0.00 2.41
6361 9256 6.951971 ACTGCAGAGTTCTTCCTTATATTGT 58.048 36.000 23.35 0.00 0.00 2.71
6362 9257 7.224362 CAGACTGCAGAGTTCTTCCTTATATTG 59.776 40.741 23.35 0.00 30.16 1.90
6363 9258 7.124901 TCAGACTGCAGAGTTCTTCCTTATATT 59.875 37.037 23.35 0.00 30.16 1.28
6364 9259 6.609212 TCAGACTGCAGAGTTCTTCCTTATAT 59.391 38.462 23.35 0.00 30.16 0.86
6365 9260 5.952347 TCAGACTGCAGAGTTCTTCCTTATA 59.048 40.000 23.35 0.00 30.16 0.98
6366 9261 4.774726 TCAGACTGCAGAGTTCTTCCTTAT 59.225 41.667 23.35 0.00 30.16 1.73
6367 9262 4.152647 TCAGACTGCAGAGTTCTTCCTTA 58.847 43.478 23.35 0.00 30.16 2.69
6368 9263 2.968574 TCAGACTGCAGAGTTCTTCCTT 59.031 45.455 23.35 0.00 30.16 3.36
6369 9264 2.603021 TCAGACTGCAGAGTTCTTCCT 58.397 47.619 23.35 0.00 30.16 3.36
6370 9265 3.063485 GTTCAGACTGCAGAGTTCTTCC 58.937 50.000 23.35 0.00 30.16 3.46
6371 9266 3.740321 CAGTTCAGACTGCAGAGTTCTTC 59.260 47.826 23.35 6.14 46.08 2.87
6372 9267 3.726607 CAGTTCAGACTGCAGAGTTCTT 58.273 45.455 23.35 0.00 46.08 2.52
6373 9268 3.383620 CAGTTCAGACTGCAGAGTTCT 57.616 47.619 23.35 10.38 46.08 3.01
6383 9278 3.255642 GTCTCTCTGCTTCAGTTCAGACT 59.744 47.826 11.59 0.00 35.66 3.24
6384 9279 3.574614 GTCTCTCTGCTTCAGTTCAGAC 58.425 50.000 0.00 1.66 35.66 3.51
6385 9280 2.227626 CGTCTCTCTGCTTCAGTTCAGA 59.772 50.000 0.00 0.00 37.70 3.27
6386 9281 2.030363 ACGTCTCTCTGCTTCAGTTCAG 60.030 50.000 0.00 0.00 32.61 3.02
6387 9282 1.957177 ACGTCTCTCTGCTTCAGTTCA 59.043 47.619 0.00 0.00 32.61 3.18
6388 9283 2.715737 ACGTCTCTCTGCTTCAGTTC 57.284 50.000 0.00 0.00 32.61 3.01
6389 9284 3.570550 ACTTACGTCTCTCTGCTTCAGTT 59.429 43.478 0.00 0.00 32.61 3.16
6390 9285 3.150767 ACTTACGTCTCTCTGCTTCAGT 58.849 45.455 0.00 0.00 32.61 3.41
6391 9286 3.840890 ACTTACGTCTCTCTGCTTCAG 57.159 47.619 0.00 0.00 0.00 3.02
6392 9287 5.414765 TGATTACTTACGTCTCTCTGCTTCA 59.585 40.000 0.00 0.00 0.00 3.02
6393 9288 5.881447 TGATTACTTACGTCTCTCTGCTTC 58.119 41.667 0.00 0.00 0.00 3.86
6394 9289 5.648526 TCTGATTACTTACGTCTCTCTGCTT 59.351 40.000 0.00 0.00 0.00 3.91
6395 9290 5.186942 TCTGATTACTTACGTCTCTCTGCT 58.813 41.667 0.00 0.00 0.00 4.24
6396 9291 5.487153 TCTGATTACTTACGTCTCTCTGC 57.513 43.478 0.00 0.00 0.00 4.26
6397 9292 5.968848 GCTTCTGATTACTTACGTCTCTCTG 59.031 44.000 0.00 0.00 0.00 3.35
6398 9293 5.883673 AGCTTCTGATTACTTACGTCTCTCT 59.116 40.000 0.00 0.00 0.00 3.10
6399 9294 6.126568 AGCTTCTGATTACTTACGTCTCTC 57.873 41.667 0.00 0.00 0.00 3.20
6400 9295 7.811117 ATAGCTTCTGATTACTTACGTCTCT 57.189 36.000 0.00 0.00 0.00 3.10
6401 9296 9.601971 CTAATAGCTTCTGATTACTTACGTCTC 57.398 37.037 0.00 0.00 0.00 3.36
6402 9297 9.339850 TCTAATAGCTTCTGATTACTTACGTCT 57.660 33.333 0.00 0.00 0.00 4.18
6426 9321 8.723311 CGAGATTCCGAGTACTATAAGAAATCT 58.277 37.037 0.00 5.39 0.00 2.40
6427 9322 7.964011 CCGAGATTCCGAGTACTATAAGAAATC 59.036 40.741 0.00 0.65 0.00 2.17
6428 9323 7.664731 TCCGAGATTCCGAGTACTATAAGAAAT 59.335 37.037 0.00 0.00 0.00 2.17
6429 9324 6.994496 TCCGAGATTCCGAGTACTATAAGAAA 59.006 38.462 0.00 0.00 0.00 2.52
6430 9325 6.528321 TCCGAGATTCCGAGTACTATAAGAA 58.472 40.000 0.00 0.00 0.00 2.52
6431 9326 6.106648 TCCGAGATTCCGAGTACTATAAGA 57.893 41.667 0.00 0.00 0.00 2.10
6432 9327 6.988622 ATCCGAGATTCCGAGTACTATAAG 57.011 41.667 0.00 0.00 0.00 1.73
6433 9328 6.938596 TGAATCCGAGATTCCGAGTACTATAA 59.061 38.462 18.17 0.00 0.00 0.98
6434 9329 6.470278 TGAATCCGAGATTCCGAGTACTATA 58.530 40.000 18.17 0.61 0.00 1.31
6435 9330 5.314529 TGAATCCGAGATTCCGAGTACTAT 58.685 41.667 18.17 0.00 0.00 2.12
6436 9331 4.711399 TGAATCCGAGATTCCGAGTACTA 58.289 43.478 18.17 1.66 0.00 1.82
6437 9332 3.552875 TGAATCCGAGATTCCGAGTACT 58.447 45.455 18.17 0.00 0.00 2.73
6438 9333 3.984508 TGAATCCGAGATTCCGAGTAC 57.015 47.619 18.17 0.00 0.00 2.73
6439 9334 5.768662 ACTAATGAATCCGAGATTCCGAGTA 59.231 40.000 18.17 8.16 0.00 2.59
6440 9335 4.585162 ACTAATGAATCCGAGATTCCGAGT 59.415 41.667 18.17 15.50 0.00 4.18
6441 9336 4.920340 CACTAATGAATCCGAGATTCCGAG 59.080 45.833 18.17 15.08 0.00 4.63
6442 9337 4.796290 GCACTAATGAATCCGAGATTCCGA 60.796 45.833 18.17 6.63 0.00 4.55
6443 9338 3.430218 GCACTAATGAATCCGAGATTCCG 59.570 47.826 18.17 10.16 0.00 4.30
6444 9339 4.636249 AGCACTAATGAATCCGAGATTCC 58.364 43.478 18.17 6.49 0.00 3.01
6445 9340 6.451393 ACTAGCACTAATGAATCCGAGATTC 58.549 40.000 15.59 15.59 0.00 2.52
6446 9341 6.412362 ACTAGCACTAATGAATCCGAGATT 57.588 37.500 0.00 0.00 0.00 2.40
6447 9342 6.219473 CAACTAGCACTAATGAATCCGAGAT 58.781 40.000 0.00 0.00 0.00 2.75
6448 9343 5.451937 CCAACTAGCACTAATGAATCCGAGA 60.452 44.000 0.00 0.00 0.00 4.04
6449 9344 4.747108 CCAACTAGCACTAATGAATCCGAG 59.253 45.833 0.00 0.00 0.00 4.63
6450 9345 4.404394 TCCAACTAGCACTAATGAATCCGA 59.596 41.667 0.00 0.00 0.00 4.55
6451 9346 4.693283 TCCAACTAGCACTAATGAATCCG 58.307 43.478 0.00 0.00 0.00 4.18
6452 9347 6.823689 TCTTTCCAACTAGCACTAATGAATCC 59.176 38.462 0.00 0.00 0.00 3.01
6453 9348 7.849804 TCTTTCCAACTAGCACTAATGAATC 57.150 36.000 0.00 0.00 0.00 2.52
6454 9349 7.284034 CCATCTTTCCAACTAGCACTAATGAAT 59.716 37.037 0.00 0.00 0.00 2.57
6455 9350 6.599244 CCATCTTTCCAACTAGCACTAATGAA 59.401 38.462 0.00 0.00 0.00 2.57
6456 9351 6.070251 TCCATCTTTCCAACTAGCACTAATGA 60.070 38.462 0.00 0.00 0.00 2.57
6457 9352 6.115446 TCCATCTTTCCAACTAGCACTAATG 58.885 40.000 0.00 0.00 0.00 1.90
6458 9353 6.313519 TCCATCTTTCCAACTAGCACTAAT 57.686 37.500 0.00 0.00 0.00 1.73
6459 9354 5.755409 TCCATCTTTCCAACTAGCACTAA 57.245 39.130 0.00 0.00 0.00 2.24
6460 9355 5.755409 TTCCATCTTTCCAACTAGCACTA 57.245 39.130 0.00 0.00 0.00 2.74
6461 9356 4.640771 TTCCATCTTTCCAACTAGCACT 57.359 40.909 0.00 0.00 0.00 4.40
6462 9357 5.904362 ATTTCCATCTTTCCAACTAGCAC 57.096 39.130 0.00 0.00 0.00 4.40
6463 9358 7.833682 TGAATATTTCCATCTTTCCAACTAGCA 59.166 33.333 0.00 0.00 0.00 3.49
6464 9359 8.225603 TGAATATTTCCATCTTTCCAACTAGC 57.774 34.615 0.00 0.00 0.00 3.42
6486 9381 8.531982 CCCTAATGAATCCGAGTATAAGATGAA 58.468 37.037 0.00 0.00 0.00 2.57
6487 9382 7.363880 GCCCTAATGAATCCGAGTATAAGATGA 60.364 40.741 0.00 0.00 0.00 2.92
6488 9383 6.758886 GCCCTAATGAATCCGAGTATAAGATG 59.241 42.308 0.00 0.00 0.00 2.90
6489 9384 6.405953 CGCCCTAATGAATCCGAGTATAAGAT 60.406 42.308 0.00 0.00 0.00 2.40
6490 9385 5.105877 CGCCCTAATGAATCCGAGTATAAGA 60.106 44.000 0.00 0.00 0.00 2.10
6491 9386 5.103000 CGCCCTAATGAATCCGAGTATAAG 58.897 45.833 0.00 0.00 0.00 1.73
6492 9387 4.619863 GCGCCCTAATGAATCCGAGTATAA 60.620 45.833 0.00 0.00 0.00 0.98
6493 9388 3.119245 GCGCCCTAATGAATCCGAGTATA 60.119 47.826 0.00 0.00 0.00 1.47
6494 9389 2.353803 GCGCCCTAATGAATCCGAGTAT 60.354 50.000 0.00 0.00 0.00 2.12
6495 9390 1.000506 GCGCCCTAATGAATCCGAGTA 59.999 52.381 0.00 0.00 0.00 2.59
6496 9391 0.249911 GCGCCCTAATGAATCCGAGT 60.250 55.000 0.00 0.00 0.00 4.18
6497 9392 1.284982 CGCGCCCTAATGAATCCGAG 61.285 60.000 0.00 0.00 0.00 4.63
6498 9393 1.300620 CGCGCCCTAATGAATCCGA 60.301 57.895 0.00 0.00 0.00 4.55
6499 9394 1.157870 AACGCGCCCTAATGAATCCG 61.158 55.000 5.73 0.00 0.00 4.18
6500 9395 1.021968 AAACGCGCCCTAATGAATCC 58.978 50.000 5.73 0.00 0.00 3.01
6501 9396 2.844122 AAAACGCGCCCTAATGAATC 57.156 45.000 5.73 0.00 0.00 2.52
6502 9397 2.032924 GCTAAAACGCGCCCTAATGAAT 59.967 45.455 5.73 0.00 0.00 2.57
6503 9398 1.399089 GCTAAAACGCGCCCTAATGAA 59.601 47.619 5.73 0.00 0.00 2.57
6504 9399 1.011333 GCTAAAACGCGCCCTAATGA 58.989 50.000 5.73 0.00 0.00 2.57
6505 9400 0.028902 GGCTAAAACGCGCCCTAATG 59.971 55.000 5.73 0.00 40.43 1.90
6506 9401 1.433837 CGGCTAAAACGCGCCCTAAT 61.434 55.000 5.73 0.00 43.38 1.73
6507 9402 2.101835 CGGCTAAAACGCGCCCTAA 61.102 57.895 5.73 0.00 43.38 2.69
6508 9403 2.509786 CGGCTAAAACGCGCCCTA 60.510 61.111 5.73 0.00 43.38 3.53
6509 9404 4.692475 ACGGCTAAAACGCGCCCT 62.692 61.111 5.73 0.00 43.38 5.19
6510 9405 4.454717 CACGGCTAAAACGCGCCC 62.455 66.667 5.73 0.00 43.38 6.13
6513 9408 3.419759 AGGCACGGCTAAAACGCG 61.420 61.111 3.53 3.53 34.00 6.01
6514 9409 2.175811 CAGGCACGGCTAAAACGC 59.824 61.111 0.00 0.00 34.00 4.84
6515 9410 2.686816 CCCAGGCACGGCTAAAACG 61.687 63.158 0.00 0.00 37.36 3.60
6516 9411 2.989881 GCCCAGGCACGGCTAAAAC 61.990 63.158 3.12 0.00 43.48 2.43
6517 9412 2.675075 GCCCAGGCACGGCTAAAA 60.675 61.111 3.12 0.00 43.48 1.52
6518 9413 4.733542 GGCCCAGGCACGGCTAAA 62.734 66.667 11.50 0.00 46.24 1.85
6535 9430 3.427528 TCTTCGTTTTTGAATCCGAGTCG 59.572 43.478 5.29 5.29 0.00 4.18
6536 9431 4.985044 TCTTCGTTTTTGAATCCGAGTC 57.015 40.909 0.00 0.00 0.00 3.36
6537 9432 5.744666 TTTCTTCGTTTTTGAATCCGAGT 57.255 34.783 0.00 0.00 0.00 4.18
6538 9433 4.613031 GCTTTCTTCGTTTTTGAATCCGAG 59.387 41.667 0.00 0.00 0.00 4.63
6539 9434 4.533222 GCTTTCTTCGTTTTTGAATCCGA 58.467 39.130 0.00 0.00 0.00 4.55
6540 9435 3.357823 CGCTTTCTTCGTTTTTGAATCCG 59.642 43.478 0.00 0.00 0.00 4.18
6541 9436 3.119628 GCGCTTTCTTCGTTTTTGAATCC 59.880 43.478 0.00 0.00 0.00 3.01
6542 9437 3.181563 CGCGCTTTCTTCGTTTTTGAATC 60.182 43.478 5.56 0.00 0.00 2.52
6543 9438 2.719046 CGCGCTTTCTTCGTTTTTGAAT 59.281 40.909 5.56 0.00 0.00 2.57
6544 9439 2.105659 CGCGCTTTCTTCGTTTTTGAA 58.894 42.857 5.56 0.00 0.00 2.69
6545 9440 1.737249 CGCGCTTTCTTCGTTTTTGA 58.263 45.000 5.56 0.00 0.00 2.69
6546 9441 0.156651 GCGCGCTTTCTTCGTTTTTG 59.843 50.000 26.67 0.00 0.00 2.44
6547 9442 1.259544 CGCGCGCTTTCTTCGTTTTT 61.260 50.000 30.48 0.00 0.00 1.94
6548 9443 1.721133 CGCGCGCTTTCTTCGTTTT 60.721 52.632 30.48 0.00 0.00 2.43
6549 9444 2.127758 CGCGCGCTTTCTTCGTTT 60.128 55.556 30.48 0.00 0.00 3.60
6550 9445 2.369477 AAACGCGCGCTTTCTTCGTT 62.369 50.000 32.58 20.12 43.93 3.85
6551 9446 2.369477 AAAACGCGCGCTTTCTTCGT 62.369 50.000 32.58 14.89 34.63 3.85
6552 9447 0.449831 TAAAACGCGCGCTTTCTTCG 60.450 50.000 31.58 14.15 0.00 3.79
6553 9448 1.239145 CTAAAACGCGCGCTTTCTTC 58.761 50.000 31.58 0.00 0.00 2.87
6554 9449 0.724785 GCTAAAACGCGCGCTTTCTT 60.725 50.000 31.58 22.02 0.00 2.52
6555 9450 1.154469 GCTAAAACGCGCGCTTTCT 60.154 52.632 31.58 16.18 0.00 2.52
6556 9451 3.349472 GCTAAAACGCGCGCTTTC 58.651 55.556 31.58 16.67 0.00 2.62
6564 9459 1.062525 CCAGGCATCGCTAAAACGC 59.937 57.895 0.00 0.00 0.00 4.84
6565 9460 1.721487 CCCAGGCATCGCTAAAACG 59.279 57.895 0.00 0.00 0.00 3.60
6566 9461 1.433471 GCCCAGGCATCGCTAAAAC 59.567 57.895 3.12 0.00 41.49 2.43
6567 9462 1.752694 GGCCCAGGCATCGCTAAAA 60.753 57.895 11.50 0.00 44.11 1.52
6568 9463 2.124320 GGCCCAGGCATCGCTAAA 60.124 61.111 11.50 0.00 44.11 1.85
6569 9464 4.545706 CGGCCCAGGCATCGCTAA 62.546 66.667 11.50 0.00 44.11 3.09
6573 9468 4.899239 GAGTCGGCCCAGGCATCG 62.899 72.222 11.50 5.99 44.11 3.84
6574 9469 4.899239 CGAGTCGGCCCAGGCATC 62.899 72.222 11.50 1.98 44.11 3.91
6585 9480 1.588404 CGATGGTTTGAATCCGAGTCG 59.412 52.381 5.29 5.29 0.00 4.18
6586 9481 2.603560 GTCGATGGTTTGAATCCGAGTC 59.396 50.000 0.00 0.00 0.00 3.36
6587 9482 2.028476 TGTCGATGGTTTGAATCCGAGT 60.028 45.455 0.00 0.00 0.00 4.18
6588 9483 2.604914 CTGTCGATGGTTTGAATCCGAG 59.395 50.000 0.00 0.00 0.00 4.63
6589 9484 2.232696 TCTGTCGATGGTTTGAATCCGA 59.767 45.455 0.00 0.00 0.00 4.55
6590 9485 2.616960 TCTGTCGATGGTTTGAATCCG 58.383 47.619 0.00 0.00 0.00 4.18
6591 9486 6.049149 TCTTATCTGTCGATGGTTTGAATCC 58.951 40.000 0.00 0.00 0.00 3.01
6592 9487 7.721286 ATCTTATCTGTCGATGGTTTGAATC 57.279 36.000 0.00 0.00 0.00 2.52
6593 9488 9.784531 AATATCTTATCTGTCGATGGTTTGAAT 57.215 29.630 0.00 0.00 0.00 2.57
6594 9489 9.045223 CAATATCTTATCTGTCGATGGTTTGAA 57.955 33.333 0.00 0.00 0.00 2.69
6595 9490 7.171508 GCAATATCTTATCTGTCGATGGTTTGA 59.828 37.037 0.00 0.00 0.00 2.69
6596 9491 7.293745 GCAATATCTTATCTGTCGATGGTTTG 58.706 38.462 0.00 0.00 0.00 2.93
6597 9492 6.428159 GGCAATATCTTATCTGTCGATGGTTT 59.572 38.462 0.00 0.00 0.00 3.27
6598 9493 5.934625 GGCAATATCTTATCTGTCGATGGTT 59.065 40.000 0.00 0.00 0.00 3.67
6599 9494 5.482908 GGCAATATCTTATCTGTCGATGGT 58.517 41.667 0.00 0.00 0.00 3.55
6600 9495 4.564372 CGGCAATATCTTATCTGTCGATGG 59.436 45.833 0.00 0.00 39.16 3.51
6601 9496 4.032217 GCGGCAATATCTTATCTGTCGATG 59.968 45.833 1.23 0.00 39.16 3.84
6602 9497 4.177026 GCGGCAATATCTTATCTGTCGAT 58.823 43.478 1.23 0.00 39.16 3.59
6603 9498 3.575630 GCGGCAATATCTTATCTGTCGA 58.424 45.455 1.23 0.00 39.16 4.20
6604 9499 2.668457 GGCGGCAATATCTTATCTGTCG 59.332 50.000 3.07 0.00 39.78 4.35
6605 9500 3.003480 GGGCGGCAATATCTTATCTGTC 58.997 50.000 12.47 0.00 0.00 3.51
6606 9501 2.639839 AGGGCGGCAATATCTTATCTGT 59.360 45.455 12.47 0.00 0.00 3.41
6607 9502 3.005554 CAGGGCGGCAATATCTTATCTG 58.994 50.000 12.47 0.34 0.00 2.90
6608 9503 2.639839 ACAGGGCGGCAATATCTTATCT 59.360 45.455 12.47 0.00 0.00 1.98
6609 9504 3.003480 GACAGGGCGGCAATATCTTATC 58.997 50.000 12.47 0.00 0.00 1.75
6610 9505 2.612972 CGACAGGGCGGCAATATCTTAT 60.613 50.000 12.47 0.00 0.00 1.73
6611 9506 1.270094 CGACAGGGCGGCAATATCTTA 60.270 52.381 12.47 0.00 0.00 2.10
6612 9507 0.532862 CGACAGGGCGGCAATATCTT 60.533 55.000 12.47 0.00 0.00 2.40
6613 9508 1.069765 CGACAGGGCGGCAATATCT 59.930 57.895 12.47 0.00 0.00 1.98
6614 9509 2.607892 GCGACAGGGCGGCAATATC 61.608 63.158 12.47 1.28 0.00 1.63
6615 9510 2.591715 GCGACAGGGCGGCAATAT 60.592 61.111 12.47 0.00 0.00 1.28
6645 9540 3.119096 GACGGGGCGAGCAAGAAC 61.119 66.667 0.00 0.00 0.00 3.01
6666 9561 0.178932 AGATCGATCGGGATTGGGGA 60.179 55.000 19.33 0.00 0.00 4.81
6667 9562 0.036952 CAGATCGATCGGGATTGGGG 60.037 60.000 19.33 0.00 0.00 4.96
6670 9565 1.615883 AGGTCAGATCGATCGGGATTG 59.384 52.381 22.72 14.08 0.00 2.67
6672 9567 1.615883 CAAGGTCAGATCGATCGGGAT 59.384 52.381 22.72 1.47 0.00 3.85
6681 9576 1.198713 TCAGAGGGCAAGGTCAGATC 58.801 55.000 0.00 0.00 0.00 2.75
6693 9588 2.444706 TGGAGGCCGATCAGAGGG 60.445 66.667 0.00 0.00 0.00 4.30
6694 9589 3.136750 CTGGAGGCCGATCAGAGG 58.863 66.667 14.99 0.00 0.00 3.69
6695 9590 2.420890 GCTGGAGGCCGATCAGAG 59.579 66.667 21.54 6.57 34.27 3.35
6711 9606 2.110006 GGGAGGAAGAGGATGCGC 59.890 66.667 0.00 0.00 0.00 6.09
6853 15289 2.890766 ATCAAGGCGGGGTTCACGT 61.891 57.895 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.