Multiple sequence alignment - TraesCS1B01G237400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G237400 chr1B 100.000 2548 0 0 1 2548 424522996 424525543 0.000000e+00 4706.0
1 TraesCS1B01G237400 chr1B 95.699 186 8 0 1276 1461 424524211 424524396 1.480000e-77 300.0
2 TraesCS1B01G237400 chr1B 95.699 186 8 0 1216 1401 424524271 424524456 1.480000e-77 300.0
3 TraesCS1B01G237400 chr1B 88.068 176 20 1 1396 1571 424414519 424414693 9.240000e-50 207.0
4 TraesCS1B01G237400 chr1B 88.406 69 4 3 103 170 564444683 564444618 2.100000e-11 80.5
5 TraesCS1B01G237400 chr1D 90.596 1425 60 25 395 1758 314333719 314335130 0.000000e+00 1821.0
6 TraesCS1B01G237400 chr1D 94.624 186 10 0 1216 1401 314334641 314334826 3.210000e-74 289.0
7 TraesCS1B01G237400 chr1D 93.011 186 13 0 1276 1461 314334581 314334766 3.230000e-69 272.0
8 TraesCS1B01G237400 chr1D 90.789 152 14 0 1396 1547 314419184 314419335 1.200000e-48 204.0
9 TraesCS1B01G237400 chr1D 87.500 176 21 1 1396 1571 314196499 314196673 4.300000e-48 202.0
10 TraesCS1B01G237400 chr1D 93.651 126 8 0 1216 1341 314334701 314334826 3.350000e-44 189.0
11 TraesCS1B01G237400 chr2D 99.875 801 1 0 1748 2548 422778803 422778003 0.000000e+00 1474.0
12 TraesCS1B01G237400 chr2D 100.000 796 0 0 1753 2548 592136860 592137655 0.000000e+00 1471.0
13 TraesCS1B01G237400 chr2D 100.000 795 0 0 1754 2548 106237457 106236663 0.000000e+00 1469.0
14 TraesCS1B01G237400 chr4A 99.875 799 1 0 1750 2548 85145654 85144856 0.000000e+00 1471.0
15 TraesCS1B01G237400 chr4A 99.875 798 1 0 1751 2548 84922888 84923685 0.000000e+00 1469.0
16 TraesCS1B01G237400 chr4A 100.000 795 0 0 1754 2548 85183978 85183184 0.000000e+00 1469.0
17 TraesCS1B01G237400 chr4A 89.552 67 7 0 103 169 533574943 533575009 4.520000e-13 86.1
18 TraesCS1B01G237400 chr6B 100.000 795 0 0 1754 2548 712670461 712669667 0.000000e+00 1469.0
19 TraesCS1B01G237400 chr6B 95.556 45 2 0 124 168 156403586 156403630 3.520000e-09 73.1
20 TraesCS1B01G237400 chr3B 100.000 795 0 0 1754 2548 613815713 613814919 0.000000e+00 1469.0
21 TraesCS1B01G237400 chr3B 88.406 69 4 4 102 169 694782779 694782714 2.100000e-11 80.5
22 TraesCS1B01G237400 chr3D 99.623 795 3 0 1754 2548 443944475 443945269 0.000000e+00 1452.0
23 TraesCS1B01G237400 chr1A 90.940 883 45 15 484 1341 394477321 394478193 0.000000e+00 1155.0
24 TraesCS1B01G237400 chr1A 94.159 428 13 2 1336 1753 394478068 394478493 2.140000e-180 641.0
25 TraesCS1B01G237400 chr1A 93.701 381 12 2 1383 1753 394563859 394564237 6.160000e-156 560.0
26 TraesCS1B01G237400 chr1A 92.105 152 12 0 1396 1547 394588132 394588283 5.520000e-52 215.0
27 TraesCS1B01G237400 chr1A 96.825 126 4 0 1276 1401 394478068 394478193 7.140000e-51 211.0
28 TraesCS1B01G237400 chr1A 92.157 102 6 2 390 490 394542362 394542462 2.640000e-30 143.0
29 TraesCS1B01G237400 chr1A 91.667 96 6 2 390 484 394453543 394453637 5.720000e-27 132.0
30 TraesCS1B01G237400 chr1A 94.937 79 4 0 1263 1341 394563859 394563937 9.570000e-25 124.0
31 TraesCS1B01G237400 chrUn 93.701 381 12 2 1383 1753 370292517 370292139 6.160000e-156 560.0
32 TraesCS1B01G237400 chrUn 93.701 381 12 2 1383 1753 371634525 371634147 6.160000e-156 560.0
33 TraesCS1B01G237400 chrUn 97.468 79 2 0 1323 1401 370292517 370292439 4.420000e-28 135.0
34 TraesCS1B01G237400 chrUn 97.468 79 2 0 1323 1401 371634525 371634447 4.420000e-28 135.0
35 TraesCS1B01G237400 chrUn 94.937 79 4 0 1263 1341 370292517 370292439 9.570000e-25 124.0
36 TraesCS1B01G237400 chrUn 94.937 79 4 0 1263 1341 371634525 371634447 9.570000e-25 124.0
37 TraesCS1B01G237400 chr7D 91.176 68 3 2 102 169 214775147 214775083 3.490000e-14 89.8
38 TraesCS1B01G237400 chr7D 100.000 36 0 0 1 36 479751590 479751555 1.640000e-07 67.6
39 TraesCS1B01G237400 chr2A 89.231 65 7 0 103 167 707755695 707755631 5.840000e-12 82.4
40 TraesCS1B01G237400 chr5A 88.060 67 6 2 103 168 582851647 582851582 7.560000e-11 78.7
41 TraesCS1B01G237400 chr4D 86.765 68 8 1 103 170 493792269 493792335 9.780000e-10 75.0
42 TraesCS1B01G237400 chr2B 86.364 66 7 1 103 168 222623777 222623840 1.260000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G237400 chr1B 424522996 424525543 2547 False 1768.666667 4706 97.132667 1 2548 3 chr1B.!!$F2 2547
1 TraesCS1B01G237400 chr1D 314333719 314335130 1411 False 642.750000 1821 92.970500 395 1758 4 chr1D.!!$F3 1363
2 TraesCS1B01G237400 chr2D 422778003 422778803 800 True 1474.000000 1474 99.875000 1748 2548 1 chr2D.!!$R2 800
3 TraesCS1B01G237400 chr2D 592136860 592137655 795 False 1471.000000 1471 100.000000 1753 2548 1 chr2D.!!$F1 795
4 TraesCS1B01G237400 chr2D 106236663 106237457 794 True 1469.000000 1469 100.000000 1754 2548 1 chr2D.!!$R1 794
5 TraesCS1B01G237400 chr4A 85144856 85145654 798 True 1471.000000 1471 99.875000 1750 2548 1 chr4A.!!$R1 798
6 TraesCS1B01G237400 chr4A 84922888 84923685 797 False 1469.000000 1469 99.875000 1751 2548 1 chr4A.!!$F1 797
7 TraesCS1B01G237400 chr4A 85183184 85183978 794 True 1469.000000 1469 100.000000 1754 2548 1 chr4A.!!$R2 794
8 TraesCS1B01G237400 chr6B 712669667 712670461 794 True 1469.000000 1469 100.000000 1754 2548 1 chr6B.!!$R1 794
9 TraesCS1B01G237400 chr3B 613814919 613815713 794 True 1469.000000 1469 100.000000 1754 2548 1 chr3B.!!$R1 794
10 TraesCS1B01G237400 chr3D 443944475 443945269 794 False 1452.000000 1452 99.623000 1754 2548 1 chr3D.!!$F1 794
11 TraesCS1B01G237400 chr1A 394477321 394478493 1172 False 669.000000 1155 93.974667 484 1753 3 chr1A.!!$F4 1269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.04109 ACCCTAAATGCCCCAAGTGG 59.959 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1715 0.873743 GCCTACATGCGTGCTCTCTC 60.874 60.0 5.64 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.270893 GTTGGTGGTTTAATCCAGTTTGT 57.729 39.130 5.47 0.00 38.23 2.83
23 24 4.927978 TGGTGGTTTAATCCAGTTTGTG 57.072 40.909 5.47 0.00 38.23 3.33
24 25 4.537751 TGGTGGTTTAATCCAGTTTGTGA 58.462 39.130 5.47 0.00 38.23 3.58
25 26 4.582656 TGGTGGTTTAATCCAGTTTGTGAG 59.417 41.667 5.47 0.00 38.23 3.51
26 27 4.825085 GGTGGTTTAATCCAGTTTGTGAGA 59.175 41.667 5.47 0.00 38.23 3.27
27 28 5.048713 GGTGGTTTAATCCAGTTTGTGAGAG 60.049 44.000 5.47 0.00 38.23 3.20
28 29 5.763204 GTGGTTTAATCCAGTTTGTGAGAGA 59.237 40.000 5.47 0.00 38.23 3.10
29 30 5.997746 TGGTTTAATCCAGTTTGTGAGAGAG 59.002 40.000 0.86 0.00 33.19 3.20
30 31 5.998363 GGTTTAATCCAGTTTGTGAGAGAGT 59.002 40.000 0.00 0.00 0.00 3.24
31 32 7.159372 GGTTTAATCCAGTTTGTGAGAGAGTA 58.841 38.462 0.00 0.00 0.00 2.59
32 33 7.332182 GGTTTAATCCAGTTTGTGAGAGAGTAG 59.668 40.741 0.00 0.00 0.00 2.57
33 34 3.944055 TCCAGTTTGTGAGAGAGTAGC 57.056 47.619 0.00 0.00 0.00 3.58
34 35 2.563179 TCCAGTTTGTGAGAGAGTAGCC 59.437 50.000 0.00 0.00 0.00 3.93
35 36 2.564947 CCAGTTTGTGAGAGAGTAGCCT 59.435 50.000 0.00 0.00 0.00 4.58
36 37 3.764434 CCAGTTTGTGAGAGAGTAGCCTA 59.236 47.826 0.00 0.00 0.00 3.93
37 38 4.142271 CCAGTTTGTGAGAGAGTAGCCTAG 60.142 50.000 0.00 0.00 0.00 3.02
38 39 4.702612 CAGTTTGTGAGAGAGTAGCCTAGA 59.297 45.833 0.00 0.00 0.00 2.43
39 40 4.947388 AGTTTGTGAGAGAGTAGCCTAGAG 59.053 45.833 0.00 0.00 0.00 2.43
40 41 4.577988 TTGTGAGAGAGTAGCCTAGAGT 57.422 45.455 0.00 0.00 0.00 3.24
41 42 3.879998 TGTGAGAGAGTAGCCTAGAGTG 58.120 50.000 0.00 0.00 0.00 3.51
42 43 3.264706 TGTGAGAGAGTAGCCTAGAGTGT 59.735 47.826 0.00 0.00 0.00 3.55
43 44 4.263550 TGTGAGAGAGTAGCCTAGAGTGTT 60.264 45.833 0.00 0.00 0.00 3.32
44 45 4.095782 GTGAGAGAGTAGCCTAGAGTGTTG 59.904 50.000 0.00 0.00 0.00 3.33
45 46 3.626930 AGAGAGTAGCCTAGAGTGTTGG 58.373 50.000 0.00 0.00 0.00 3.77
46 47 2.691011 GAGAGTAGCCTAGAGTGTTGGG 59.309 54.545 0.00 0.00 0.00 4.12
47 48 2.043252 AGAGTAGCCTAGAGTGTTGGGT 59.957 50.000 0.00 0.00 35.60 4.51
48 49 2.832733 GAGTAGCCTAGAGTGTTGGGTT 59.167 50.000 0.00 0.00 33.34 4.11
49 50 3.248888 AGTAGCCTAGAGTGTTGGGTTT 58.751 45.455 0.00 0.00 33.34 3.27
50 51 2.568623 AGCCTAGAGTGTTGGGTTTG 57.431 50.000 0.00 0.00 0.00 2.93
51 52 1.073923 AGCCTAGAGTGTTGGGTTTGG 59.926 52.381 0.00 0.00 0.00 3.28
52 53 1.886655 GCCTAGAGTGTTGGGTTTGGG 60.887 57.143 0.00 0.00 0.00 4.12
53 54 1.423921 CCTAGAGTGTTGGGTTTGGGT 59.576 52.381 0.00 0.00 0.00 4.51
54 55 2.504367 CTAGAGTGTTGGGTTTGGGTG 58.496 52.381 0.00 0.00 0.00 4.61
55 56 0.629058 AGAGTGTTGGGTTTGGGTGT 59.371 50.000 0.00 0.00 0.00 4.16
56 57 1.847737 AGAGTGTTGGGTTTGGGTGTA 59.152 47.619 0.00 0.00 0.00 2.90
57 58 2.242708 AGAGTGTTGGGTTTGGGTGTAA 59.757 45.455 0.00 0.00 0.00 2.41
58 59 3.117284 AGAGTGTTGGGTTTGGGTGTAAT 60.117 43.478 0.00 0.00 0.00 1.89
59 60 2.962421 AGTGTTGGGTTTGGGTGTAATG 59.038 45.455 0.00 0.00 0.00 1.90
60 61 2.036604 GTGTTGGGTTTGGGTGTAATGG 59.963 50.000 0.00 0.00 0.00 3.16
61 62 1.621317 GTTGGGTTTGGGTGTAATGGG 59.379 52.381 0.00 0.00 0.00 4.00
62 63 0.861155 TGGGTTTGGGTGTAATGGGT 59.139 50.000 0.00 0.00 0.00 4.51
63 64 1.262417 GGGTTTGGGTGTAATGGGTG 58.738 55.000 0.00 0.00 0.00 4.61
64 65 1.481615 GGGTTTGGGTGTAATGGGTGT 60.482 52.381 0.00 0.00 0.00 4.16
65 66 2.321719 GGTTTGGGTGTAATGGGTGTT 58.678 47.619 0.00 0.00 0.00 3.32
66 67 2.036604 GGTTTGGGTGTAATGGGTGTTG 59.963 50.000 0.00 0.00 0.00 3.33
67 68 2.002505 TTGGGTGTAATGGGTGTTGG 57.997 50.000 0.00 0.00 0.00 3.77
68 69 0.540830 TGGGTGTAATGGGTGTTGGC 60.541 55.000 0.00 0.00 0.00 4.52
69 70 1.254975 GGGTGTAATGGGTGTTGGCC 61.255 60.000 0.00 0.00 0.00 5.36
70 71 1.591504 GGTGTAATGGGTGTTGGCCG 61.592 60.000 0.00 0.00 0.00 6.13
71 72 0.891904 GTGTAATGGGTGTTGGCCGT 60.892 55.000 0.00 0.00 0.00 5.68
72 73 0.891449 TGTAATGGGTGTTGGCCGTG 60.891 55.000 0.00 0.00 0.00 4.94
73 74 1.974343 TAATGGGTGTTGGCCGTGC 60.974 57.895 0.00 0.00 0.00 5.34
83 84 2.190578 GGCCGTGCCTAGATGCTT 59.809 61.111 7.58 0.00 46.69 3.91
84 85 1.445942 GGCCGTGCCTAGATGCTTA 59.554 57.895 7.58 0.00 46.69 3.09
85 86 0.880718 GGCCGTGCCTAGATGCTTAC 60.881 60.000 7.58 0.00 46.69 2.34
86 87 0.179084 GCCGTGCCTAGATGCTTACA 60.179 55.000 0.00 0.00 0.00 2.41
87 88 1.541233 GCCGTGCCTAGATGCTTACAT 60.541 52.381 0.00 0.00 39.98 2.29
95 96 4.885426 ATGCTTACATCTGCCCCG 57.115 55.556 0.00 0.00 0.00 5.73
96 97 1.915228 ATGCTTACATCTGCCCCGT 59.085 52.632 0.00 0.00 0.00 5.28
97 98 0.464373 ATGCTTACATCTGCCCCGTG 60.464 55.000 0.00 0.00 0.00 4.94
98 99 2.472909 GCTTACATCTGCCCCGTGC 61.473 63.158 0.00 0.00 41.77 5.34
99 100 1.819632 CTTACATCTGCCCCGTGCC 60.820 63.158 0.00 0.00 40.16 5.01
100 101 2.257409 CTTACATCTGCCCCGTGCCT 62.257 60.000 0.00 0.00 40.16 4.75
101 102 0.978667 TTACATCTGCCCCGTGCCTA 60.979 55.000 0.00 0.00 40.16 3.93
102 103 0.762842 TACATCTGCCCCGTGCCTAT 60.763 55.000 0.00 0.00 40.16 2.57
103 104 1.302033 CATCTGCCCCGTGCCTATC 60.302 63.158 0.00 0.00 40.16 2.08
104 105 1.460305 ATCTGCCCCGTGCCTATCT 60.460 57.895 0.00 0.00 40.16 1.98
105 106 1.056700 ATCTGCCCCGTGCCTATCTT 61.057 55.000 0.00 0.00 40.16 2.40
106 107 1.524621 CTGCCCCGTGCCTATCTTG 60.525 63.158 0.00 0.00 40.16 3.02
107 108 2.257409 CTGCCCCGTGCCTATCTTGT 62.257 60.000 0.00 0.00 40.16 3.16
108 109 0.978667 TGCCCCGTGCCTATCTTGTA 60.979 55.000 0.00 0.00 40.16 2.41
109 110 0.532196 GCCCCGTGCCTATCTTGTAC 60.532 60.000 0.00 0.00 0.00 2.90
110 111 0.828022 CCCCGTGCCTATCTTGTACA 59.172 55.000 0.00 0.00 0.00 2.90
111 112 1.416401 CCCCGTGCCTATCTTGTACAT 59.584 52.381 0.00 0.00 0.00 2.29
112 113 2.158813 CCCCGTGCCTATCTTGTACATT 60.159 50.000 0.00 0.00 0.00 2.71
113 114 3.541632 CCCGTGCCTATCTTGTACATTT 58.458 45.455 0.00 0.00 0.00 2.32
114 115 3.945285 CCCGTGCCTATCTTGTACATTTT 59.055 43.478 0.00 0.00 0.00 1.82
115 116 4.035208 CCCGTGCCTATCTTGTACATTTTC 59.965 45.833 0.00 0.00 0.00 2.29
116 117 4.876107 CCGTGCCTATCTTGTACATTTTCT 59.124 41.667 0.00 0.00 0.00 2.52
117 118 5.006746 CCGTGCCTATCTTGTACATTTTCTC 59.993 44.000 0.00 0.00 0.00 2.87
118 119 5.812642 CGTGCCTATCTTGTACATTTTCTCT 59.187 40.000 0.00 0.00 0.00 3.10
119 120 6.019479 CGTGCCTATCTTGTACATTTTCTCTC 60.019 42.308 0.00 0.00 0.00 3.20
120 121 6.258947 GTGCCTATCTTGTACATTTTCTCTCC 59.741 42.308 0.00 0.00 0.00 3.71
121 122 6.070251 TGCCTATCTTGTACATTTTCTCTCCA 60.070 38.462 0.00 0.00 0.00 3.86
122 123 6.995091 GCCTATCTTGTACATTTTCTCTCCAT 59.005 38.462 0.00 0.00 0.00 3.41
123 124 7.172361 GCCTATCTTGTACATTTTCTCTCCATC 59.828 40.741 0.00 0.00 0.00 3.51
124 125 8.428063 CCTATCTTGTACATTTTCTCTCCATCT 58.572 37.037 0.00 0.00 0.00 2.90
125 126 9.829507 CTATCTTGTACATTTTCTCTCCATCTT 57.170 33.333 0.00 0.00 0.00 2.40
126 127 8.729805 ATCTTGTACATTTTCTCTCCATCTTC 57.270 34.615 0.00 0.00 0.00 2.87
127 128 7.679783 TCTTGTACATTTTCTCTCCATCTTCA 58.320 34.615 0.00 0.00 0.00 3.02
128 129 8.156820 TCTTGTACATTTTCTCTCCATCTTCAA 58.843 33.333 0.00 0.00 0.00 2.69
129 130 8.868522 TTGTACATTTTCTCTCCATCTTCAAT 57.131 30.769 0.00 0.00 0.00 2.57
130 131 9.958180 TTGTACATTTTCTCTCCATCTTCAATA 57.042 29.630 0.00 0.00 0.00 1.90
131 132 9.958180 TGTACATTTTCTCTCCATCTTCAATAA 57.042 29.630 0.00 0.00 0.00 1.40
144 145 9.621629 TCCATCTTCAATAAAAATATGGTACGT 57.378 29.630 0.00 0.00 35.12 3.57
145 146 9.878599 CCATCTTCAATAAAAATATGGTACGTC 57.121 33.333 0.00 0.00 0.00 4.34
151 152 8.132362 TCAATAAAAATATGGTACGTCATTGGC 58.868 33.333 0.00 0.00 0.00 4.52
152 153 4.545823 AAAATATGGTACGTCATTGGCG 57.454 40.909 9.48 9.48 0.00 5.69
153 154 2.902705 ATATGGTACGTCATTGGCGT 57.097 45.000 21.05 21.05 45.11 5.68
154 155 4.325028 AATATGGTACGTCATTGGCGTA 57.675 40.909 18.80 18.80 42.85 4.42
160 161 1.065358 ACGTCATTGGCGTACTTTCG 58.935 50.000 15.69 0.00 41.06 3.46
161 162 1.336148 ACGTCATTGGCGTACTTTCGA 60.336 47.619 15.69 0.00 41.06 3.71
162 163 1.722464 CGTCATTGGCGTACTTTCGAA 59.278 47.619 1.71 0.00 0.00 3.71
163 164 2.156117 CGTCATTGGCGTACTTTCGAAA 59.844 45.455 10.71 10.71 0.00 3.46
164 165 3.363182 CGTCATTGGCGTACTTTCGAAAA 60.363 43.478 12.41 0.00 0.00 2.29
165 166 4.529446 GTCATTGGCGTACTTTCGAAAAA 58.471 39.130 12.41 1.72 0.00 1.94
194 195 9.469807 AAAATACATGCAGACGTAAATTTTTCA 57.530 25.926 0.00 0.00 0.00 2.69
195 196 8.673626 AATACATGCAGACGTAAATTTTTCAG 57.326 30.769 0.00 0.00 0.00 3.02
196 197 6.312399 ACATGCAGACGTAAATTTTTCAGA 57.688 33.333 0.00 0.00 0.00 3.27
197 198 6.373779 ACATGCAGACGTAAATTTTTCAGAG 58.626 36.000 0.00 0.00 0.00 3.35
198 199 6.204688 ACATGCAGACGTAAATTTTTCAGAGA 59.795 34.615 0.00 0.00 0.00 3.10
199 200 6.228273 TGCAGACGTAAATTTTTCAGAGAG 57.772 37.500 0.00 0.00 0.00 3.20
200 201 5.989168 TGCAGACGTAAATTTTTCAGAGAGA 59.011 36.000 0.00 0.00 0.00 3.10
201 202 6.146184 TGCAGACGTAAATTTTTCAGAGAGAG 59.854 38.462 0.00 0.00 0.00 3.20
202 203 6.366332 GCAGACGTAAATTTTTCAGAGAGAGA 59.634 38.462 0.00 0.00 0.00 3.10
203 204 7.064016 GCAGACGTAAATTTTTCAGAGAGAGAT 59.936 37.037 0.00 0.00 0.00 2.75
204 205 8.930760 CAGACGTAAATTTTTCAGAGAGAGATT 58.069 33.333 0.00 0.00 0.00 2.40
231 232 8.925338 AGATGATTTAATAACGAAGGGAGTAGT 58.075 33.333 0.00 0.00 0.00 2.73
232 233 9.543783 GATGATTTAATAACGAAGGGAGTAGTT 57.456 33.333 0.00 0.00 0.00 2.24
233 234 8.937634 TGATTTAATAACGAAGGGAGTAGTTC 57.062 34.615 0.00 0.00 0.00 3.01
234 235 8.533657 TGATTTAATAACGAAGGGAGTAGTTCA 58.466 33.333 0.00 0.00 0.00 3.18
235 236 8.713737 ATTTAATAACGAAGGGAGTAGTTCAC 57.286 34.615 0.00 0.00 0.00 3.18
236 237 5.733620 AATAACGAAGGGAGTAGTTCACA 57.266 39.130 0.00 0.00 0.00 3.58
237 238 5.733620 ATAACGAAGGGAGTAGTTCACAA 57.266 39.130 0.00 0.00 0.00 3.33
238 239 3.382048 ACGAAGGGAGTAGTTCACAAC 57.618 47.619 0.00 0.00 0.00 3.32
239 240 2.288030 ACGAAGGGAGTAGTTCACAACG 60.288 50.000 0.00 0.00 36.56 4.10
240 241 2.030540 CGAAGGGAGTAGTTCACAACGA 60.031 50.000 0.00 0.00 33.89 3.85
241 242 3.551454 CGAAGGGAGTAGTTCACAACGAA 60.551 47.826 0.00 0.00 33.89 3.85
242 243 3.662247 AGGGAGTAGTTCACAACGAAG 57.338 47.619 0.00 0.00 33.09 3.79
243 244 2.067013 GGGAGTAGTTCACAACGAAGC 58.933 52.381 0.00 0.00 33.09 3.86
244 245 2.067013 GGAGTAGTTCACAACGAAGCC 58.933 52.381 0.00 0.00 33.09 4.35
245 246 2.547218 GGAGTAGTTCACAACGAAGCCA 60.547 50.000 0.00 0.00 33.09 4.75
246 247 3.128349 GAGTAGTTCACAACGAAGCCAA 58.872 45.455 0.00 0.00 33.09 4.52
247 248 3.537580 AGTAGTTCACAACGAAGCCAAA 58.462 40.909 0.00 0.00 33.09 3.28
248 249 4.134563 AGTAGTTCACAACGAAGCCAAAT 58.865 39.130 0.00 0.00 33.09 2.32
249 250 5.302360 AGTAGTTCACAACGAAGCCAAATA 58.698 37.500 0.00 0.00 33.09 1.40
250 251 5.938125 AGTAGTTCACAACGAAGCCAAATAT 59.062 36.000 0.00 0.00 33.09 1.28
251 252 5.705609 AGTTCACAACGAAGCCAAATATT 57.294 34.783 0.00 0.00 33.09 1.28
252 253 5.460646 AGTTCACAACGAAGCCAAATATTG 58.539 37.500 0.00 0.00 33.09 1.90
253 254 5.240623 AGTTCACAACGAAGCCAAATATTGA 59.759 36.000 0.00 0.00 33.09 2.57
254 255 5.697473 TCACAACGAAGCCAAATATTGAA 57.303 34.783 0.00 0.00 0.00 2.69
255 256 5.698832 TCACAACGAAGCCAAATATTGAAG 58.301 37.500 0.00 0.00 0.00 3.02
256 257 4.324402 CACAACGAAGCCAAATATTGAAGC 59.676 41.667 0.00 0.00 0.00 3.86
257 258 3.782889 ACGAAGCCAAATATTGAAGCC 57.217 42.857 0.00 0.00 0.00 4.35
258 259 2.097466 ACGAAGCCAAATATTGAAGCCG 59.903 45.455 0.00 0.00 0.00 5.52
259 260 2.097466 CGAAGCCAAATATTGAAGCCGT 59.903 45.455 0.00 0.00 0.00 5.68
260 261 3.438360 GAAGCCAAATATTGAAGCCGTG 58.562 45.455 0.00 0.00 0.00 4.94
261 262 2.446435 AGCCAAATATTGAAGCCGTGT 58.554 42.857 0.00 0.00 0.00 4.49
262 263 2.825532 AGCCAAATATTGAAGCCGTGTT 59.174 40.909 0.00 0.00 0.00 3.32
263 264 3.258123 AGCCAAATATTGAAGCCGTGTTT 59.742 39.130 0.00 0.00 0.00 2.83
264 265 3.993736 GCCAAATATTGAAGCCGTGTTTT 59.006 39.130 0.00 0.00 0.00 2.43
265 266 4.450757 GCCAAATATTGAAGCCGTGTTTTT 59.549 37.500 0.00 0.00 0.00 1.94
284 285 3.837399 TTTACCCTAAATGCCCCAAGT 57.163 42.857 0.00 0.00 0.00 3.16
285 286 2.818751 TACCCTAAATGCCCCAAGTG 57.181 50.000 0.00 0.00 0.00 3.16
286 287 0.041090 ACCCTAAATGCCCCAAGTGG 59.959 55.000 0.00 0.00 0.00 4.00
287 288 0.041090 CCCTAAATGCCCCAAGTGGT 59.959 55.000 0.00 0.00 0.00 4.16
288 289 1.552254 CCCTAAATGCCCCAAGTGGTT 60.552 52.381 0.00 0.00 0.00 3.67
289 290 1.550072 CCTAAATGCCCCAAGTGGTTG 59.450 52.381 0.00 0.00 0.00 3.77
290 291 2.247358 CTAAATGCCCCAAGTGGTTGT 58.753 47.619 0.00 0.00 30.95 3.32
291 292 1.506025 AAATGCCCCAAGTGGTTGTT 58.494 45.000 0.00 0.00 30.95 2.83
292 293 1.506025 AATGCCCCAAGTGGTTGTTT 58.494 45.000 0.00 0.00 30.95 2.83
293 294 0.758123 ATGCCCCAAGTGGTTGTTTG 59.242 50.000 0.00 0.00 30.95 2.93
294 295 1.333636 TGCCCCAAGTGGTTGTTTGG 61.334 55.000 0.00 0.00 42.77 3.28
295 296 1.045911 GCCCCAAGTGGTTGTTTGGA 61.046 55.000 4.89 0.00 45.32 3.53
296 297 1.715785 CCCCAAGTGGTTGTTTGGAT 58.284 50.000 4.89 0.00 45.32 3.41
297 298 2.883026 CCCCAAGTGGTTGTTTGGATA 58.117 47.619 4.89 0.00 45.32 2.59
298 299 3.440127 CCCCAAGTGGTTGTTTGGATAT 58.560 45.455 4.89 0.00 45.32 1.63
299 300 3.447229 CCCCAAGTGGTTGTTTGGATATC 59.553 47.826 4.89 0.00 45.32 1.63
300 301 3.128589 CCCAAGTGGTTGTTTGGATATCG 59.871 47.826 4.89 0.00 45.32 2.92
301 302 4.006989 CCAAGTGGTTGTTTGGATATCGA 58.993 43.478 0.00 0.00 45.32 3.59
302 303 4.094887 CCAAGTGGTTGTTTGGATATCGAG 59.905 45.833 0.00 0.00 45.32 4.04
303 304 4.819105 AGTGGTTGTTTGGATATCGAGA 57.181 40.909 0.00 0.00 0.00 4.04
304 305 5.160607 AGTGGTTGTTTGGATATCGAGAA 57.839 39.130 0.00 0.00 0.00 2.87
305 306 5.745227 AGTGGTTGTTTGGATATCGAGAAT 58.255 37.500 0.00 0.00 0.00 2.40
306 307 6.180472 AGTGGTTGTTTGGATATCGAGAATT 58.820 36.000 0.00 0.00 0.00 2.17
307 308 7.335627 AGTGGTTGTTTGGATATCGAGAATTA 58.664 34.615 0.00 0.00 0.00 1.40
308 309 7.993183 AGTGGTTGTTTGGATATCGAGAATTAT 59.007 33.333 0.00 0.00 0.00 1.28
309 310 9.268268 GTGGTTGTTTGGATATCGAGAATTATA 57.732 33.333 0.00 0.00 0.00 0.98
310 311 9.839817 TGGTTGTTTGGATATCGAGAATTATAA 57.160 29.630 0.00 0.00 0.00 0.98
334 335 8.791327 AAAAAGACAATTATGCCCTAAAATGG 57.209 30.769 0.00 0.00 0.00 3.16
335 336 7.732222 AAAGACAATTATGCCCTAAAATGGA 57.268 32.000 0.00 0.00 0.00 3.41
336 337 6.966534 AGACAATTATGCCCTAAAATGGAG 57.033 37.500 0.00 0.00 0.00 3.86
337 338 5.302823 AGACAATTATGCCCTAAAATGGAGC 59.697 40.000 0.00 0.00 0.00 4.70
338 339 4.344968 ACAATTATGCCCTAAAATGGAGCC 59.655 41.667 0.00 0.00 0.00 4.70
339 340 2.270352 TATGCCCTAAAATGGAGCCG 57.730 50.000 0.00 0.00 0.00 5.52
340 341 1.109323 ATGCCCTAAAATGGAGCCGC 61.109 55.000 0.00 0.00 0.00 6.53
341 342 1.453928 GCCCTAAAATGGAGCCGCT 60.454 57.895 0.00 0.00 0.00 5.52
342 343 1.728490 GCCCTAAAATGGAGCCGCTG 61.728 60.000 0.00 0.00 0.00 5.18
343 344 0.394352 CCCTAAAATGGAGCCGCTGT 60.394 55.000 0.00 0.00 0.00 4.40
344 345 1.463674 CCTAAAATGGAGCCGCTGTT 58.536 50.000 0.00 0.00 0.00 3.16
345 346 1.133025 CCTAAAATGGAGCCGCTGTTG 59.867 52.381 0.00 0.00 0.00 3.33
346 347 2.083774 CTAAAATGGAGCCGCTGTTGA 58.916 47.619 0.00 0.00 0.00 3.18
347 348 1.327303 AAAATGGAGCCGCTGTTGAA 58.673 45.000 0.00 0.00 0.00 2.69
348 349 1.327303 AAATGGAGCCGCTGTTGAAA 58.673 45.000 0.00 0.00 0.00 2.69
349 350 0.598065 AATGGAGCCGCTGTTGAAAC 59.402 50.000 0.00 0.00 0.00 2.78
350 351 1.577328 ATGGAGCCGCTGTTGAAACG 61.577 55.000 0.00 0.00 0.00 3.60
351 352 2.127232 GAGCCGCTGTTGAAACGC 60.127 61.111 0.00 1.58 0.00 4.84
352 353 2.591715 AGCCGCTGTTGAAACGCT 60.592 55.556 0.00 0.00 0.00 5.07
353 354 2.127232 GCCGCTGTTGAAACGCTC 60.127 61.111 7.87 0.00 0.00 5.03
354 355 2.607892 GCCGCTGTTGAAACGCTCT 61.608 57.895 7.87 0.00 0.00 4.09
355 356 1.289109 GCCGCTGTTGAAACGCTCTA 61.289 55.000 7.87 0.00 0.00 2.43
356 357 1.144969 CCGCTGTTGAAACGCTCTAA 58.855 50.000 7.87 0.00 0.00 2.10
357 358 1.732259 CCGCTGTTGAAACGCTCTAAT 59.268 47.619 7.87 0.00 0.00 1.73
358 359 2.474526 CCGCTGTTGAAACGCTCTAATG 60.475 50.000 7.87 0.00 0.00 1.90
359 360 2.509870 GCTGTTGAAACGCTCTAATGC 58.490 47.619 0.00 0.00 0.00 3.56
360 361 2.160417 GCTGTTGAAACGCTCTAATGCT 59.840 45.455 0.00 0.00 0.00 3.79
361 362 3.370978 GCTGTTGAAACGCTCTAATGCTA 59.629 43.478 0.00 0.00 0.00 3.49
362 363 4.034510 GCTGTTGAAACGCTCTAATGCTAT 59.965 41.667 0.00 0.00 0.00 2.97
363 364 5.234329 GCTGTTGAAACGCTCTAATGCTATA 59.766 40.000 0.00 0.00 0.00 1.31
364 365 6.073548 GCTGTTGAAACGCTCTAATGCTATAT 60.074 38.462 0.00 0.00 0.00 0.86
365 366 7.116376 GCTGTTGAAACGCTCTAATGCTATATA 59.884 37.037 0.00 0.00 0.00 0.86
366 367 8.880878 TGTTGAAACGCTCTAATGCTATATAA 57.119 30.769 0.00 0.00 0.00 0.98
367 368 9.320352 TGTTGAAACGCTCTAATGCTATATAAA 57.680 29.630 0.00 0.00 0.00 1.40
368 369 9.582223 GTTGAAACGCTCTAATGCTATATAAAC 57.418 33.333 0.00 0.00 0.00 2.01
369 370 9.542462 TTGAAACGCTCTAATGCTATATAAACT 57.458 29.630 0.00 0.00 0.00 2.66
370 371 9.542462 TGAAACGCTCTAATGCTATATAAACTT 57.458 29.630 0.00 0.00 0.00 2.66
371 372 9.798885 GAAACGCTCTAATGCTATATAAACTTG 57.201 33.333 0.00 0.00 0.00 3.16
372 373 7.352719 ACGCTCTAATGCTATATAAACTTGC 57.647 36.000 0.00 0.00 0.00 4.01
373 374 6.929049 ACGCTCTAATGCTATATAAACTTGCA 59.071 34.615 0.00 0.00 38.05 4.08
374 375 7.604164 ACGCTCTAATGCTATATAAACTTGCAT 59.396 33.333 1.60 1.60 44.86 3.96
375 376 8.113062 CGCTCTAATGCTATATAAACTTGCATC 58.887 37.037 6.81 0.00 42.57 3.91
376 377 8.394121 GCTCTAATGCTATATAAACTTGCATCC 58.606 37.037 6.81 0.00 42.57 3.51
377 378 8.479313 TCTAATGCTATATAAACTTGCATCCG 57.521 34.615 6.81 3.02 42.57 4.18
378 379 5.551760 ATGCTATATAAACTTGCATCCGC 57.448 39.130 1.60 0.00 39.79 5.54
388 389 3.486263 GCATCCGCAAACGTAGCT 58.514 55.556 10.63 0.00 38.36 3.32
389 390 2.673074 GCATCCGCAAACGTAGCTA 58.327 52.632 10.63 0.00 38.36 3.32
390 391 0.577269 GCATCCGCAAACGTAGCTAG 59.423 55.000 10.63 3.19 38.36 3.42
391 392 0.577269 CATCCGCAAACGTAGCTAGC 59.423 55.000 6.62 6.62 37.70 3.42
392 393 0.460311 ATCCGCAAACGTAGCTAGCT 59.540 50.000 23.12 23.12 37.70 3.32
393 394 0.457853 TCCGCAAACGTAGCTAGCTG 60.458 55.000 27.68 13.96 37.70 4.24
394 395 1.345176 CGCAAACGTAGCTAGCTGC 59.655 57.895 27.68 24.53 36.81 5.25
486 498 3.004106 CCGGACGTTTCTCGGATAACTAT 59.996 47.826 12.90 0.00 45.96 2.12
541 553 2.987593 CTCGCACATGTCGTACGC 59.012 61.111 11.24 6.57 34.20 4.42
559 571 2.279073 CCCTCCGTAGCCCAGAGA 59.721 66.667 0.00 0.00 0.00 3.10
560 572 1.381327 CCCTCCGTAGCCCAGAGAA 60.381 63.158 0.00 0.00 0.00 2.87
563 575 2.317040 CCTCCGTAGCCCAGAGAATTA 58.683 52.381 0.00 0.00 0.00 1.40
573 586 3.209410 CCCAGAGAATTACATGAGGCAC 58.791 50.000 0.00 0.00 0.00 5.01
574 587 2.868583 CCAGAGAATTACATGAGGCACG 59.131 50.000 0.00 0.00 0.00 5.34
668 681 4.770010 GCTAGAACCATGATCCTAGCTACT 59.230 45.833 21.96 0.71 46.27 2.57
669 682 5.946972 GCTAGAACCATGATCCTAGCTACTA 59.053 44.000 21.96 1.63 46.27 1.82
670 683 6.127842 GCTAGAACCATGATCCTAGCTACTAC 60.128 46.154 21.96 4.19 46.27 2.73
730 743 0.752009 CAGCATTGGCAGCTCATCCT 60.752 55.000 0.00 0.00 44.61 3.24
811 825 2.437180 TCCAGAGGCTTGCATGCG 60.437 61.111 17.36 0.00 0.00 4.73
835 858 2.355837 GCGTCGACAGCAGGAACA 60.356 61.111 21.73 0.00 34.19 3.18
874 918 2.032620 CCTCCTCGCCGGCTATATAAT 58.967 52.381 26.68 0.00 0.00 1.28
924 968 2.610976 GCATCAGGCAATCACAAAGCAA 60.611 45.455 0.00 0.00 43.97 3.91
932 976 2.124011 ATCACAAAGCAACAACAGCG 57.876 45.000 0.00 0.00 37.01 5.18
936 980 0.100325 CAAAGCAACAACAGCGGTCA 59.900 50.000 0.00 0.00 37.01 4.02
993 1043 2.444706 TAGCTCCCAGGCAGCGAT 60.445 61.111 0.00 0.00 42.14 4.58
996 1046 3.531207 CTCCCAGGCAGCGATCGA 61.531 66.667 21.57 0.00 0.00 3.59
1172 1222 4.082733 CGATCTGTGACTTCTGGTACTCAA 60.083 45.833 0.00 0.00 0.00 3.02
1189 1239 2.805671 CTCAATACTGGCGTTGTTGTGA 59.194 45.455 0.00 0.00 0.00 3.58
1190 1240 2.546368 TCAATACTGGCGTTGTTGTGAC 59.454 45.455 0.00 0.00 0.00 3.67
1253 1303 4.421554 CAGCTGGGGGAGGAGGGA 62.422 72.222 5.57 0.00 0.00 4.20
1330 1380 2.420568 GGTACCGCGAGATGGGTCA 61.421 63.158 8.23 0.00 37.75 4.02
1337 1387 1.450312 CGAGATGGGTCACAAGGGC 60.450 63.158 0.00 0.00 0.00 5.19
1415 1465 2.579738 GGGGAGACTCGCAAGGAC 59.420 66.667 19.96 0.00 38.47 3.85
1602 1662 3.733684 GCTACTAGTGAGCAAGCTGTCTC 60.734 52.174 5.39 8.18 39.84 3.36
1648 1708 2.103153 AGGTCAAGGTCAGGTCTTGA 57.897 50.000 2.80 2.80 45.57 3.02
1723 1787 4.330347 GCTTTAGGTGTCTTAGCTTGTAGC 59.670 45.833 0.00 0.00 42.84 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.047188 CACAAACTGGATTAAACCACCAAC 58.953 41.667 0.00 0.00 35.91 3.77
1 2 4.956700 TCACAAACTGGATTAAACCACCAA 59.043 37.500 0.00 0.00 35.91 3.67
2 3 4.537751 TCACAAACTGGATTAAACCACCA 58.462 39.130 0.00 0.00 35.91 4.17
3 4 4.825085 TCTCACAAACTGGATTAAACCACC 59.175 41.667 0.00 0.00 35.91 4.61
4 5 5.763204 TCTCTCACAAACTGGATTAAACCAC 59.237 40.000 0.00 0.00 35.91 4.16
5 6 5.935945 TCTCTCACAAACTGGATTAAACCA 58.064 37.500 4.20 4.20 38.33 3.67
6 7 5.998363 ACTCTCTCACAAACTGGATTAAACC 59.002 40.000 0.00 0.00 0.00 3.27
7 8 7.148557 GCTACTCTCTCACAAACTGGATTAAAC 60.149 40.741 0.00 0.00 0.00 2.01
8 9 6.874134 GCTACTCTCTCACAAACTGGATTAAA 59.126 38.462 0.00 0.00 0.00 1.52
9 10 6.398918 GCTACTCTCTCACAAACTGGATTAA 58.601 40.000 0.00 0.00 0.00 1.40
10 11 5.105310 GGCTACTCTCTCACAAACTGGATTA 60.105 44.000 0.00 0.00 0.00 1.75
11 12 4.323104 GGCTACTCTCTCACAAACTGGATT 60.323 45.833 0.00 0.00 0.00 3.01
12 13 3.196685 GGCTACTCTCTCACAAACTGGAT 59.803 47.826 0.00 0.00 0.00 3.41
13 14 2.563179 GGCTACTCTCTCACAAACTGGA 59.437 50.000 0.00 0.00 0.00 3.86
14 15 2.564947 AGGCTACTCTCTCACAAACTGG 59.435 50.000 0.00 0.00 0.00 4.00
15 16 3.951775 AGGCTACTCTCTCACAAACTG 57.048 47.619 0.00 0.00 0.00 3.16
16 17 4.924625 TCTAGGCTACTCTCTCACAAACT 58.075 43.478 0.00 0.00 0.00 2.66
17 18 4.703093 ACTCTAGGCTACTCTCTCACAAAC 59.297 45.833 0.00 0.00 0.00 2.93
18 19 4.702612 CACTCTAGGCTACTCTCTCACAAA 59.297 45.833 0.00 0.00 0.00 2.83
19 20 4.263550 ACACTCTAGGCTACTCTCTCACAA 60.264 45.833 0.00 0.00 0.00 3.33
20 21 3.264706 ACACTCTAGGCTACTCTCTCACA 59.735 47.826 0.00 0.00 0.00 3.58
21 22 3.881220 ACACTCTAGGCTACTCTCTCAC 58.119 50.000 0.00 0.00 0.00 3.51
22 23 4.265893 CAACACTCTAGGCTACTCTCTCA 58.734 47.826 0.00 0.00 0.00 3.27
23 24 3.630312 CCAACACTCTAGGCTACTCTCTC 59.370 52.174 0.00 0.00 0.00 3.20
24 25 3.626222 CCCAACACTCTAGGCTACTCTCT 60.626 52.174 0.00 0.00 0.00 3.10
25 26 2.691011 CCCAACACTCTAGGCTACTCTC 59.309 54.545 0.00 0.00 0.00 3.20
26 27 2.043252 ACCCAACACTCTAGGCTACTCT 59.957 50.000 0.00 0.00 0.00 3.24
27 28 2.458620 ACCCAACACTCTAGGCTACTC 58.541 52.381 0.00 0.00 0.00 2.59
28 29 2.625282 ACCCAACACTCTAGGCTACT 57.375 50.000 0.00 0.00 0.00 2.57
29 30 3.335579 CAAACCCAACACTCTAGGCTAC 58.664 50.000 0.00 0.00 0.00 3.58
30 31 2.304761 CCAAACCCAACACTCTAGGCTA 59.695 50.000 0.00 0.00 0.00 3.93
31 32 1.073923 CCAAACCCAACACTCTAGGCT 59.926 52.381 0.00 0.00 0.00 4.58
32 33 1.534729 CCAAACCCAACACTCTAGGC 58.465 55.000 0.00 0.00 0.00 3.93
33 34 1.423921 ACCCAAACCCAACACTCTAGG 59.576 52.381 0.00 0.00 0.00 3.02
34 35 2.158667 ACACCCAAACCCAACACTCTAG 60.159 50.000 0.00 0.00 0.00 2.43
35 36 1.847737 ACACCCAAACCCAACACTCTA 59.152 47.619 0.00 0.00 0.00 2.43
36 37 0.629058 ACACCCAAACCCAACACTCT 59.371 50.000 0.00 0.00 0.00 3.24
37 38 2.351706 TACACCCAAACCCAACACTC 57.648 50.000 0.00 0.00 0.00 3.51
38 39 2.830651 TTACACCCAAACCCAACACT 57.169 45.000 0.00 0.00 0.00 3.55
39 40 2.036604 CCATTACACCCAAACCCAACAC 59.963 50.000 0.00 0.00 0.00 3.32
40 41 2.320781 CCATTACACCCAAACCCAACA 58.679 47.619 0.00 0.00 0.00 3.33
41 42 1.621317 CCCATTACACCCAAACCCAAC 59.379 52.381 0.00 0.00 0.00 3.77
42 43 1.220750 ACCCATTACACCCAAACCCAA 59.779 47.619 0.00 0.00 0.00 4.12
43 44 0.861155 ACCCATTACACCCAAACCCA 59.139 50.000 0.00 0.00 0.00 4.51
44 45 1.262417 CACCCATTACACCCAAACCC 58.738 55.000 0.00 0.00 0.00 4.11
45 46 2.003937 ACACCCATTACACCCAAACC 57.996 50.000 0.00 0.00 0.00 3.27
46 47 2.036604 CCAACACCCATTACACCCAAAC 59.963 50.000 0.00 0.00 0.00 2.93
47 48 2.320781 CCAACACCCATTACACCCAAA 58.679 47.619 0.00 0.00 0.00 3.28
48 49 2.002505 CCAACACCCATTACACCCAA 57.997 50.000 0.00 0.00 0.00 4.12
49 50 0.540830 GCCAACACCCATTACACCCA 60.541 55.000 0.00 0.00 0.00 4.51
50 51 1.254975 GGCCAACACCCATTACACCC 61.255 60.000 0.00 0.00 0.00 4.61
51 52 1.591504 CGGCCAACACCCATTACACC 61.592 60.000 2.24 0.00 0.00 4.16
52 53 0.891904 ACGGCCAACACCCATTACAC 60.892 55.000 2.24 0.00 0.00 2.90
53 54 0.891449 CACGGCCAACACCCATTACA 60.891 55.000 2.24 0.00 0.00 2.41
54 55 1.880186 CACGGCCAACACCCATTAC 59.120 57.895 2.24 0.00 0.00 1.89
55 56 1.974343 GCACGGCCAACACCCATTA 60.974 57.895 2.24 0.00 0.00 1.90
56 57 3.302344 GCACGGCCAACACCCATT 61.302 61.111 2.24 0.00 0.00 3.16
67 68 0.179084 TGTAAGCATCTAGGCACGGC 60.179 55.000 0.00 0.00 35.83 5.68
68 69 2.408050 GATGTAAGCATCTAGGCACGG 58.592 52.381 0.80 0.00 45.97 4.94
78 79 0.464373 CACGGGGCAGATGTAAGCAT 60.464 55.000 0.00 0.00 38.18 3.79
79 80 1.078497 CACGGGGCAGATGTAAGCA 60.078 57.895 0.00 0.00 0.00 3.91
80 81 2.472909 GCACGGGGCAGATGTAAGC 61.473 63.158 0.00 0.00 43.97 3.09
81 82 3.813596 GCACGGGGCAGATGTAAG 58.186 61.111 0.00 0.00 43.97 2.34
90 91 0.532196 GTACAAGATAGGCACGGGGC 60.532 60.000 1.25 1.25 43.74 5.80
91 92 0.828022 TGTACAAGATAGGCACGGGG 59.172 55.000 0.00 0.00 0.00 5.73
92 93 2.910688 ATGTACAAGATAGGCACGGG 57.089 50.000 0.00 0.00 0.00 5.28
93 94 4.876107 AGAAAATGTACAAGATAGGCACGG 59.124 41.667 0.00 0.00 0.00 4.94
94 95 5.812642 AGAGAAAATGTACAAGATAGGCACG 59.187 40.000 0.00 0.00 0.00 5.34
95 96 6.258947 GGAGAGAAAATGTACAAGATAGGCAC 59.741 42.308 0.00 0.00 0.00 5.01
96 97 6.070251 TGGAGAGAAAATGTACAAGATAGGCA 60.070 38.462 0.00 0.00 0.00 4.75
97 98 6.349300 TGGAGAGAAAATGTACAAGATAGGC 58.651 40.000 0.00 0.00 0.00 3.93
98 99 8.428063 AGATGGAGAGAAAATGTACAAGATAGG 58.572 37.037 0.00 0.00 0.00 2.57
99 100 9.829507 AAGATGGAGAGAAAATGTACAAGATAG 57.170 33.333 0.00 0.00 0.00 2.08
100 101 9.823647 GAAGATGGAGAGAAAATGTACAAGATA 57.176 33.333 0.00 0.00 0.00 1.98
101 102 8.324306 TGAAGATGGAGAGAAAATGTACAAGAT 58.676 33.333 0.00 0.00 0.00 2.40
102 103 7.679783 TGAAGATGGAGAGAAAATGTACAAGA 58.320 34.615 0.00 0.00 0.00 3.02
103 104 7.912056 TGAAGATGGAGAGAAAATGTACAAG 57.088 36.000 0.00 0.00 0.00 3.16
104 105 8.868522 ATTGAAGATGGAGAGAAAATGTACAA 57.131 30.769 0.00 0.00 0.00 2.41
105 106 9.958180 TTATTGAAGATGGAGAGAAAATGTACA 57.042 29.630 0.00 0.00 0.00 2.90
118 119 9.621629 ACGTACCATATTTTTATTGAAGATGGA 57.378 29.630 15.13 0.06 44.65 3.41
119 120 9.878599 GACGTACCATATTTTTATTGAAGATGG 57.121 33.333 8.49 8.49 46.32 3.51
125 126 8.132362 GCCAATGACGTACCATATTTTTATTGA 58.868 33.333 0.00 0.00 0.00 2.57
126 127 7.112844 CGCCAATGACGTACCATATTTTTATTG 59.887 37.037 0.00 0.00 0.00 1.90
127 128 7.136119 CGCCAATGACGTACCATATTTTTATT 58.864 34.615 0.00 0.00 0.00 1.40
128 129 6.261381 ACGCCAATGACGTACCATATTTTTAT 59.739 34.615 0.00 0.00 43.02 1.40
129 130 5.585445 ACGCCAATGACGTACCATATTTTTA 59.415 36.000 0.00 0.00 43.02 1.52
130 131 4.396790 ACGCCAATGACGTACCATATTTTT 59.603 37.500 0.00 0.00 43.02 1.94
131 132 3.942748 ACGCCAATGACGTACCATATTTT 59.057 39.130 0.00 0.00 43.02 1.82
132 133 3.537580 ACGCCAATGACGTACCATATTT 58.462 40.909 0.00 0.00 43.02 1.40
133 134 3.188159 ACGCCAATGACGTACCATATT 57.812 42.857 0.00 0.00 43.02 1.28
134 135 2.902705 ACGCCAATGACGTACCATAT 57.097 45.000 0.00 0.00 43.02 1.78
140 141 2.095314 TCGAAAGTACGCCAATGACGTA 60.095 45.455 0.00 0.00 44.55 3.57
142 143 1.342555 TCGAAAGTACGCCAATGACG 58.657 50.000 0.00 0.00 0.00 4.35
143 144 3.799137 TTTCGAAAGTACGCCAATGAC 57.201 42.857 6.47 0.00 0.00 3.06
144 145 4.815040 TTTTTCGAAAGTACGCCAATGA 57.185 36.364 10.98 0.00 0.00 2.57
168 169 9.469807 TGAAAAATTTACGTCTGCATGTATTTT 57.530 25.926 0.00 0.00 0.00 1.82
169 170 9.128107 CTGAAAAATTTACGTCTGCATGTATTT 57.872 29.630 0.00 0.00 0.00 1.40
170 171 8.511321 TCTGAAAAATTTACGTCTGCATGTATT 58.489 29.630 0.00 0.00 0.00 1.89
171 172 8.039603 TCTGAAAAATTTACGTCTGCATGTAT 57.960 30.769 0.00 0.00 0.00 2.29
172 173 7.386573 TCTCTGAAAAATTTACGTCTGCATGTA 59.613 33.333 0.00 0.00 0.00 2.29
173 174 6.204688 TCTCTGAAAAATTTACGTCTGCATGT 59.795 34.615 0.00 0.00 0.00 3.21
174 175 6.602179 TCTCTGAAAAATTTACGTCTGCATG 58.398 36.000 0.00 0.00 0.00 4.06
175 176 6.650807 TCTCTCTGAAAAATTTACGTCTGCAT 59.349 34.615 0.00 0.00 0.00 3.96
176 177 5.989168 TCTCTCTGAAAAATTTACGTCTGCA 59.011 36.000 0.00 0.00 0.00 4.41
177 178 6.366332 TCTCTCTCTGAAAAATTTACGTCTGC 59.634 38.462 0.00 0.00 0.00 4.26
178 179 7.875316 TCTCTCTCTGAAAAATTTACGTCTG 57.125 36.000 0.00 0.00 0.00 3.51
205 206 8.925338 ACTACTCCCTTCGTTATTAAATCATCT 58.075 33.333 0.00 0.00 0.00 2.90
206 207 9.543783 AACTACTCCCTTCGTTATTAAATCATC 57.456 33.333 0.00 0.00 0.00 2.92
207 208 9.543783 GAACTACTCCCTTCGTTATTAAATCAT 57.456 33.333 0.00 0.00 0.00 2.45
208 209 8.533657 TGAACTACTCCCTTCGTTATTAAATCA 58.466 33.333 0.00 0.00 0.00 2.57
209 210 8.815189 GTGAACTACTCCCTTCGTTATTAAATC 58.185 37.037 0.00 0.00 0.00 2.17
210 211 8.316214 TGTGAACTACTCCCTTCGTTATTAAAT 58.684 33.333 0.00 0.00 0.00 1.40
211 212 7.669427 TGTGAACTACTCCCTTCGTTATTAAA 58.331 34.615 0.00 0.00 0.00 1.52
212 213 7.230849 TGTGAACTACTCCCTTCGTTATTAA 57.769 36.000 0.00 0.00 0.00 1.40
213 214 6.839124 TGTGAACTACTCCCTTCGTTATTA 57.161 37.500 0.00 0.00 0.00 0.98
214 215 5.733620 TGTGAACTACTCCCTTCGTTATT 57.266 39.130 0.00 0.00 0.00 1.40
215 216 5.476614 GTTGTGAACTACTCCCTTCGTTAT 58.523 41.667 0.00 0.00 0.00 1.89
216 217 4.557296 CGTTGTGAACTACTCCCTTCGTTA 60.557 45.833 0.00 0.00 0.00 3.18
217 218 3.725490 GTTGTGAACTACTCCCTTCGTT 58.275 45.455 0.00 0.00 0.00 3.85
218 219 2.288030 CGTTGTGAACTACTCCCTTCGT 60.288 50.000 0.00 0.00 0.00 3.85
219 220 2.030540 TCGTTGTGAACTACTCCCTTCG 60.031 50.000 0.00 0.00 0.00 3.79
220 221 3.655276 TCGTTGTGAACTACTCCCTTC 57.345 47.619 0.00 0.00 0.00 3.46
221 222 3.802675 GCTTCGTTGTGAACTACTCCCTT 60.803 47.826 0.00 0.00 31.87 3.95
222 223 2.288886 GCTTCGTTGTGAACTACTCCCT 60.289 50.000 0.00 0.00 31.87 4.20
223 224 2.067013 GCTTCGTTGTGAACTACTCCC 58.933 52.381 0.00 0.00 31.87 4.30
224 225 2.067013 GGCTTCGTTGTGAACTACTCC 58.933 52.381 0.00 0.00 31.87 3.85
225 226 2.750948 TGGCTTCGTTGTGAACTACTC 58.249 47.619 0.00 0.00 31.87 2.59
226 227 2.902705 TGGCTTCGTTGTGAACTACT 57.097 45.000 0.00 0.00 31.87 2.57
227 228 3.955771 TTTGGCTTCGTTGTGAACTAC 57.044 42.857 0.00 0.00 31.87 2.73
228 229 6.428465 TCAATATTTGGCTTCGTTGTGAACTA 59.572 34.615 0.00 0.00 31.87 2.24
229 230 5.240623 TCAATATTTGGCTTCGTTGTGAACT 59.759 36.000 0.00 0.00 31.87 3.01
230 231 5.457140 TCAATATTTGGCTTCGTTGTGAAC 58.543 37.500 0.00 0.00 31.87 3.18
231 232 5.697473 TCAATATTTGGCTTCGTTGTGAA 57.303 34.783 0.00 0.00 34.74 3.18
232 233 5.697473 TTCAATATTTGGCTTCGTTGTGA 57.303 34.783 0.00 0.00 0.00 3.58
233 234 4.324402 GCTTCAATATTTGGCTTCGTTGTG 59.676 41.667 0.00 0.00 0.00 3.33
234 235 4.485163 GCTTCAATATTTGGCTTCGTTGT 58.515 39.130 0.00 0.00 0.00 3.32
235 236 3.859386 GGCTTCAATATTTGGCTTCGTTG 59.141 43.478 0.00 0.00 0.00 4.10
236 237 3.427503 CGGCTTCAATATTTGGCTTCGTT 60.428 43.478 0.00 0.00 0.00 3.85
237 238 2.097466 CGGCTTCAATATTTGGCTTCGT 59.903 45.455 0.00 0.00 0.00 3.85
238 239 2.097466 ACGGCTTCAATATTTGGCTTCG 59.903 45.455 0.00 0.00 0.00 3.79
239 240 3.119495 ACACGGCTTCAATATTTGGCTTC 60.119 43.478 0.00 0.00 0.00 3.86
240 241 2.825532 ACACGGCTTCAATATTTGGCTT 59.174 40.909 0.00 0.00 0.00 4.35
241 242 2.446435 ACACGGCTTCAATATTTGGCT 58.554 42.857 0.00 0.00 0.00 4.75
242 243 2.939460 ACACGGCTTCAATATTTGGC 57.061 45.000 0.00 0.00 0.00 4.52
262 263 4.284746 CACTTGGGGCATTTAGGGTAAAAA 59.715 41.667 0.00 0.00 0.00 1.94
263 264 3.835395 CACTTGGGGCATTTAGGGTAAAA 59.165 43.478 0.00 0.00 0.00 1.52
264 265 3.436243 CACTTGGGGCATTTAGGGTAAA 58.564 45.455 0.00 0.00 0.00 2.01
265 266 2.291930 CCACTTGGGGCATTTAGGGTAA 60.292 50.000 0.00 0.00 0.00 2.85
266 267 1.286553 CCACTTGGGGCATTTAGGGTA 59.713 52.381 0.00 0.00 0.00 3.69
267 268 0.041090 CCACTTGGGGCATTTAGGGT 59.959 55.000 0.00 0.00 0.00 4.34
268 269 0.041090 ACCACTTGGGGCATTTAGGG 59.959 55.000 0.00 0.00 42.91 3.53
269 270 1.550072 CAACCACTTGGGGCATTTAGG 59.450 52.381 0.00 0.00 42.91 2.69
270 271 2.247358 ACAACCACTTGGGGCATTTAG 58.753 47.619 0.00 0.00 42.91 1.85
271 272 2.390225 ACAACCACTTGGGGCATTTA 57.610 45.000 0.00 0.00 42.91 1.40
272 273 1.506025 AACAACCACTTGGGGCATTT 58.494 45.000 0.00 0.00 42.91 2.32
273 274 1.140652 CAAACAACCACTTGGGGCATT 59.859 47.619 0.00 0.00 42.91 3.56
274 275 0.758123 CAAACAACCACTTGGGGCAT 59.242 50.000 0.00 0.00 42.91 4.40
275 276 1.333636 CCAAACAACCACTTGGGGCA 61.334 55.000 0.00 0.00 42.91 5.36
276 277 1.045911 TCCAAACAACCACTTGGGGC 61.046 55.000 0.00 0.00 42.09 5.80
277 278 1.715785 ATCCAAACAACCACTTGGGG 58.284 50.000 0.00 0.00 42.09 4.96
278 279 3.128589 CGATATCCAAACAACCACTTGGG 59.871 47.826 0.00 0.00 42.09 4.12
279 280 4.006989 TCGATATCCAAACAACCACTTGG 58.993 43.478 0.00 0.00 43.00 3.61
280 281 4.935205 TCTCGATATCCAAACAACCACTTG 59.065 41.667 0.00 0.00 0.00 3.16
281 282 5.160607 TCTCGATATCCAAACAACCACTT 57.839 39.130 0.00 0.00 0.00 3.16
282 283 4.819105 TCTCGATATCCAAACAACCACT 57.181 40.909 0.00 0.00 0.00 4.00
283 284 6.436843 AATTCTCGATATCCAAACAACCAC 57.563 37.500 0.00 0.00 0.00 4.16
284 285 9.839817 TTATAATTCTCGATATCCAAACAACCA 57.160 29.630 0.00 0.00 0.00 3.67
308 309 9.883142 CCATTTTAGGGCATAATTGTCTTTTTA 57.117 29.630 0.00 0.00 0.00 1.52
309 310 8.601546 TCCATTTTAGGGCATAATTGTCTTTTT 58.398 29.630 0.00 0.00 0.00 1.94
310 311 8.144862 TCCATTTTAGGGCATAATTGTCTTTT 57.855 30.769 0.00 0.00 0.00 2.27
311 312 7.633553 GCTCCATTTTAGGGCATAATTGTCTTT 60.634 37.037 0.00 0.00 0.00 2.52
312 313 6.183360 GCTCCATTTTAGGGCATAATTGTCTT 60.183 38.462 0.00 0.00 0.00 3.01
313 314 5.302823 GCTCCATTTTAGGGCATAATTGTCT 59.697 40.000 0.00 0.00 0.00 3.41
314 315 5.509670 GGCTCCATTTTAGGGCATAATTGTC 60.510 44.000 0.00 0.00 0.00 3.18
315 316 4.344968 GGCTCCATTTTAGGGCATAATTGT 59.655 41.667 0.00 0.00 0.00 2.71
316 317 4.559300 CGGCTCCATTTTAGGGCATAATTG 60.559 45.833 0.00 0.00 0.00 2.32
317 318 3.573967 CGGCTCCATTTTAGGGCATAATT 59.426 43.478 0.00 0.00 0.00 1.40
318 319 3.157087 CGGCTCCATTTTAGGGCATAAT 58.843 45.455 0.00 0.00 0.00 1.28
319 320 2.582052 CGGCTCCATTTTAGGGCATAA 58.418 47.619 0.00 0.00 0.00 1.90
320 321 1.817740 GCGGCTCCATTTTAGGGCATA 60.818 52.381 0.00 0.00 0.00 3.14
321 322 1.109323 GCGGCTCCATTTTAGGGCAT 61.109 55.000 0.00 0.00 0.00 4.40
322 323 1.752694 GCGGCTCCATTTTAGGGCA 60.753 57.895 0.00 0.00 0.00 5.36
323 324 1.453928 AGCGGCTCCATTTTAGGGC 60.454 57.895 0.00 0.00 0.00 5.19
324 325 0.394352 ACAGCGGCTCCATTTTAGGG 60.394 55.000 0.00 0.00 0.00 3.53
325 326 1.133025 CAACAGCGGCTCCATTTTAGG 59.867 52.381 0.00 0.00 0.00 2.69
326 327 2.083774 TCAACAGCGGCTCCATTTTAG 58.916 47.619 0.00 0.00 0.00 1.85
327 328 2.192664 TCAACAGCGGCTCCATTTTA 57.807 45.000 0.00 0.00 0.00 1.52
328 329 1.327303 TTCAACAGCGGCTCCATTTT 58.673 45.000 0.00 0.00 0.00 1.82
329 330 1.000274 GTTTCAACAGCGGCTCCATTT 60.000 47.619 0.00 0.00 0.00 2.32
330 331 0.598065 GTTTCAACAGCGGCTCCATT 59.402 50.000 0.00 0.00 0.00 3.16
331 332 1.577328 CGTTTCAACAGCGGCTCCAT 61.577 55.000 0.00 0.00 0.00 3.41
332 333 2.250939 CGTTTCAACAGCGGCTCCA 61.251 57.895 0.00 0.00 0.00 3.86
333 334 2.556287 CGTTTCAACAGCGGCTCC 59.444 61.111 0.00 0.00 0.00 4.70
334 335 2.127232 GCGTTTCAACAGCGGCTC 60.127 61.111 0.00 0.00 0.00 4.70
335 336 2.591715 AGCGTTTCAACAGCGGCT 60.592 55.556 0.00 0.00 34.98 5.52
336 337 1.289109 TAGAGCGTTTCAACAGCGGC 61.289 55.000 0.00 0.00 34.98 6.53
337 338 1.144969 TTAGAGCGTTTCAACAGCGG 58.855 50.000 0.00 0.00 34.98 5.52
338 339 2.762472 CATTAGAGCGTTTCAACAGCG 58.238 47.619 0.00 0.00 34.98 5.18
339 340 2.160417 AGCATTAGAGCGTTTCAACAGC 59.840 45.455 0.00 0.00 40.15 4.40
340 341 5.725110 ATAGCATTAGAGCGTTTCAACAG 57.275 39.130 0.00 0.00 40.15 3.16
341 342 8.880878 TTATATAGCATTAGAGCGTTTCAACA 57.119 30.769 0.00 0.00 40.15 3.33
342 343 9.582223 GTTTATATAGCATTAGAGCGTTTCAAC 57.418 33.333 0.00 0.00 40.15 3.18
343 344 9.542462 AGTTTATATAGCATTAGAGCGTTTCAA 57.458 29.630 0.00 0.00 40.15 2.69
344 345 9.542462 AAGTTTATATAGCATTAGAGCGTTTCA 57.458 29.630 0.00 0.00 40.15 2.69
345 346 9.798885 CAAGTTTATATAGCATTAGAGCGTTTC 57.201 33.333 0.00 0.00 40.15 2.78
346 347 8.283291 GCAAGTTTATATAGCATTAGAGCGTTT 58.717 33.333 0.00 0.00 40.15 3.60
347 348 7.441157 TGCAAGTTTATATAGCATTAGAGCGTT 59.559 33.333 0.00 0.00 40.15 4.84
348 349 6.929049 TGCAAGTTTATATAGCATTAGAGCGT 59.071 34.615 0.00 0.00 40.15 5.07
349 350 7.351414 TGCAAGTTTATATAGCATTAGAGCG 57.649 36.000 0.00 0.00 40.15 5.03
350 351 8.394121 GGATGCAAGTTTATATAGCATTAGAGC 58.606 37.037 7.58 0.00 45.08 4.09
351 352 8.598924 CGGATGCAAGTTTATATAGCATTAGAG 58.401 37.037 7.58 0.00 45.08 2.43
352 353 7.064609 GCGGATGCAAGTTTATATAGCATTAGA 59.935 37.037 7.58 0.00 45.08 2.10
353 354 7.182761 GCGGATGCAAGTTTATATAGCATTAG 58.817 38.462 7.58 6.55 45.08 1.73
354 355 7.072177 GCGGATGCAAGTTTATATAGCATTA 57.928 36.000 7.58 0.00 45.08 1.90
355 356 5.942872 GCGGATGCAAGTTTATATAGCATT 58.057 37.500 7.58 0.00 45.08 3.56
371 372 0.577269 CTAGCTACGTTTGCGGATGC 59.423 55.000 0.00 0.00 43.45 3.91
372 373 0.577269 GCTAGCTACGTTTGCGGATG 59.423 55.000 7.70 0.00 43.45 3.51
373 374 0.460311 AGCTAGCTACGTTTGCGGAT 59.540 50.000 17.69 0.00 43.45 4.18
374 375 0.457853 CAGCTAGCTACGTTTGCGGA 60.458 55.000 18.86 0.00 43.45 5.54
375 376 1.999051 CAGCTAGCTACGTTTGCGG 59.001 57.895 18.86 0.00 43.45 5.69
376 377 1.345176 GCAGCTAGCTACGTTTGCG 59.655 57.895 18.86 3.27 41.61 4.85
377 378 1.345176 CGCAGCTAGCTACGTTTGC 59.655 57.895 25.96 19.29 42.61 3.68
378 379 0.640768 GACGCAGCTAGCTACGTTTG 59.359 55.000 36.26 18.02 44.84 2.93
379 380 0.526662 AGACGCAGCTAGCTACGTTT 59.473 50.000 36.26 30.07 44.84 3.60
380 381 0.099082 GAGACGCAGCTAGCTACGTT 59.901 55.000 36.26 26.75 44.84 3.99
382 383 1.368255 CGAGACGCAGCTAGCTACG 60.368 63.158 30.92 30.92 42.61 3.51
383 384 4.599417 CGAGACGCAGCTAGCTAC 57.401 61.111 18.86 11.48 42.61 3.58
394 395 3.877801 GCACCATTAAAGCGAGACG 57.122 52.632 0.00 0.00 0.00 4.18
405 406 3.687102 TCGTCCGGTCGCACCATT 61.687 61.111 16.54 0.00 38.47 3.16
437 438 1.305219 TACAATGCTTGGACGCCTGC 61.305 55.000 0.00 0.00 34.12 4.85
451 452 0.391597 CGTCCGGTATGGGCTACAAT 59.608 55.000 0.00 0.00 41.63 2.71
541 553 2.840102 CTCTGGGCTACGGAGGGG 60.840 72.222 0.00 0.00 46.81 4.79
559 571 1.721487 GCGCGTGCCTCATGTAATT 59.279 52.632 10.56 0.00 33.98 1.40
560 572 2.525248 CGCGCGTGCCTCATGTAAT 61.525 57.895 24.19 0.00 38.08 1.89
668 681 3.293714 TCGTCCGGTTGGCACGTA 61.294 61.111 11.79 0.00 35.05 3.57
669 682 4.955774 GTCGTCCGGTTGGCACGT 62.956 66.667 11.79 0.00 35.05 4.49
670 683 4.953868 TGTCGTCCGGTTGGCACG 62.954 66.667 0.00 3.33 34.14 5.34
756 770 3.539791 GCATGGGCCCCGAATTGG 61.540 66.667 22.27 1.39 37.55 3.16
758 772 4.122149 TCGCATGGGCCCCGAATT 62.122 61.111 22.27 0.00 36.38 2.17
765 779 4.175337 TGGTAGCTCGCATGGGCC 62.175 66.667 4.59 0.00 36.38 5.80
835 858 3.450115 GCGCGTGTACCTCTCCCT 61.450 66.667 8.43 0.00 0.00 4.20
919 963 1.029408 TGTGACCGCTGTTGTTGCTT 61.029 50.000 0.00 0.00 0.00 3.91
924 968 3.226884 GGTATGTGACCGCTGTTGT 57.773 52.632 0.00 0.00 38.87 3.32
936 980 2.932187 GCGGACGTAGGTTTTGGTATGT 60.932 50.000 0.00 0.00 0.00 2.29
1172 1222 1.519408 GGTCACAACAACGCCAGTAT 58.481 50.000 0.00 0.00 0.00 2.12
1253 1303 1.040893 TGTGACCCATCTCGCGGTAT 61.041 55.000 6.13 0.00 30.56 2.73
1257 1307 1.811266 CCTTGTGACCCATCTCGCG 60.811 63.158 0.00 0.00 0.00 5.87
1289 1339 3.333219 TCCCCCAGCTGCTCCTTG 61.333 66.667 8.66 0.00 0.00 3.61
1301 1351 4.874533 CGGTACCCCTCCTCCCCC 62.875 77.778 6.25 0.00 0.00 5.40
1309 1359 2.838225 CCATCTCGCGGTACCCCT 60.838 66.667 6.13 0.00 0.00 4.79
1319 1369 1.450312 GCCCTTGTGACCCATCTCG 60.450 63.158 0.00 0.00 0.00 4.04
1330 1380 3.003763 GAGTCTCCCCGCCCTTGT 61.004 66.667 0.00 0.00 0.00 3.16
1337 1387 3.068691 TCCTTGCGAGTCTCCCCG 61.069 66.667 0.00 0.00 0.00 5.73
1473 1523 4.135153 CTCGCCACCGGACTCCTG 62.135 72.222 9.46 0.00 34.56 3.86
1584 1644 1.824230 AGGAGACAGCTTGCTCACTAG 59.176 52.381 13.08 0.00 32.83 2.57
1648 1708 1.153939 GCGTGCTCTCTCGTCATGT 60.154 57.895 0.00 0.00 0.00 3.21
1655 1715 0.873743 GCCTACATGCGTGCTCTCTC 60.874 60.000 5.64 0.00 0.00 3.20
1656 1716 1.142748 GCCTACATGCGTGCTCTCT 59.857 57.895 5.64 0.00 0.00 3.10
1723 1787 1.800586 CTGAAGAACACATGGTCACCG 59.199 52.381 0.00 0.00 33.22 4.94
1724 1788 2.154462 CCTGAAGAACACATGGTCACC 58.846 52.381 0.00 0.00 33.22 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.