Multiple sequence alignment - TraesCS1B01G236400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G236400 chr1B 100.000 6246 0 0 1 6246 423594216 423587971 0.000000e+00 11535.0
1 TraesCS1B01G236400 chr1B 84.081 446 66 4 4787 5232 587495762 587496202 5.790000e-115 425.0
2 TraesCS1B01G236400 chr1B 82.075 106 13 4 2697 2801 497472857 497472957 1.120000e-12 86.1
3 TraesCS1B01G236400 chr1D 95.130 2854 68 27 476 3291 313216807 313213987 0.000000e+00 4434.0
4 TraesCS1B01G236400 chr1D 91.227 2861 143 45 3461 6246 313213980 313211153 0.000000e+00 3794.0
5 TraesCS1B01G236400 chr1D 96.099 282 11 0 55 336 313217086 313216805 1.590000e-125 460.0
6 TraesCS1B01G236400 chr1D 95.906 171 6 1 3287 3457 360358219 360358388 6.170000e-70 276.0
7 TraesCS1B01G236400 chr1D 87.179 78 10 0 2728 2805 372837101 372837024 8.620000e-14 89.8
8 TraesCS1B01G236400 chr1D 94.545 55 2 1 1 54 20986841 20986895 4.010000e-12 84.2
9 TraesCS1B01G236400 chr1D 91.803 61 3 2 4544 4602 111101215 111101275 4.010000e-12 84.2
10 TraesCS1B01G236400 chr1A 95.924 1987 66 8 775 2754 392786971 392784993 0.000000e+00 3206.0
11 TraesCS1B01G236400 chr1A 88.386 2299 136 55 3458 5701 392784479 392782257 0.000000e+00 2645.0
12 TraesCS1B01G236400 chr1A 92.549 510 24 5 2793 3291 392784989 392784483 0.000000e+00 719.0
13 TraesCS1B01G236400 chr1A 89.252 214 21 1 55 268 393454555 393454344 3.710000e-67 267.0
14 TraesCS1B01G236400 chr1A 87.671 219 12 7 6027 6245 392782009 392781806 2.250000e-59 241.0
15 TraesCS1B01G236400 chr1A 91.160 181 9 3 5785 5965 392782193 392782020 8.090000e-59 239.0
16 TraesCS1B01G236400 chr1A 91.228 57 2 3 4557 4611 437585264 437585209 2.410000e-09 75.0
17 TraesCS1B01G236400 chr1A 100.000 37 0 0 5701 5737 392782235 392782199 1.120000e-07 69.4
18 TraesCS1B01G236400 chr6D 83.314 1738 213 42 996 2699 16196719 16195025 0.000000e+00 1531.0
19 TraesCS1B01G236400 chr6D 81.293 588 92 11 4655 5238 16380527 16381100 1.590000e-125 460.0
20 TraesCS1B01G236400 chr6D 83.162 487 56 10 4762 5241 16191270 16190803 7.490000e-114 422.0
21 TraesCS1B01G236400 chr6D 96.491 171 5 1 3289 3458 243033058 243032888 1.330000e-71 281.0
22 TraesCS1B01G236400 chr6D 95.954 173 6 1 3289 3460 406391527 406391355 4.770000e-71 279.0
23 TraesCS1B01G236400 chr6D 84.884 86 10 1 2713 2798 462616303 462616221 4.010000e-12 84.2
24 TraesCS1B01G236400 chr6A 82.366 1741 228 43 999 2714 16460734 16459048 0.000000e+00 1441.0
25 TraesCS1B01G236400 chr6A 83.514 461 64 8 4787 5247 16712885 16712437 2.690000e-113 420.0
26 TraesCS1B01G236400 chr6A 91.034 145 12 1 336 480 495741176 495741319 1.780000e-45 195.0
27 TraesCS1B01G236400 chr6A 92.424 66 5 0 2730 2795 563741793 563741858 1.850000e-15 95.3
28 TraesCS1B01G236400 chr6A 100.000 39 0 0 16 54 103258801 103258839 8.690000e-09 73.1
29 TraesCS1B01G236400 chr6B 84.868 1368 165 29 1379 2715 27944703 27943347 0.000000e+00 1341.0
30 TraesCS1B01G236400 chr6B 81.661 1734 208 58 996 2687 28002497 28004162 0.000000e+00 1339.0
31 TraesCS1B01G236400 chr6B 83.948 461 62 9 4787 5247 28945052 28944604 1.240000e-116 431.0
32 TraesCS1B01G236400 chr6B 82.851 484 57 9 4762 5238 28005681 28006145 1.620000e-110 411.0
33 TraesCS1B01G236400 chr6B 82.209 489 69 9 4762 5238 59301498 59301016 7.540000e-109 405.0
34 TraesCS1B01G236400 chr6B 83.285 347 37 11 1372 1701 27995840 27996182 3.660000e-77 300.0
35 TraesCS1B01G236400 chr6B 85.563 284 41 0 1708 1991 27996256 27996539 1.320000e-76 298.0
36 TraesCS1B01G236400 chr6B 92.361 144 8 1 335 478 720915764 720915624 1.060000e-47 202.0
37 TraesCS1B01G236400 chr6B 85.714 84 9 1 2713 2796 705317530 705317450 1.120000e-12 86.1
38 TraesCS1B01G236400 chr2B 81.851 1642 205 45 996 2597 46602134 46600546 0.000000e+00 1295.0
39 TraesCS1B01G236400 chr2B 91.304 69 6 0 2733 2801 620274925 620274857 1.850000e-15 95.3
40 TraesCS1B01G236400 chr2B 87.500 80 9 1 2724 2803 247602651 247602729 2.400000e-14 91.6
41 TraesCS1B01G236400 chr7B 97.024 168 5 0 3289 3456 427701763 427701930 3.690000e-72 283.0
42 TraesCS1B01G236400 chr5B 96.471 170 6 0 3289 3458 427931199 427931368 1.330000e-71 281.0
43 TraesCS1B01G236400 chr5A 97.006 167 5 0 3290 3456 458199044 458198878 1.330000e-71 281.0
44 TraesCS1B01G236400 chr5A 95.349 172 8 0 3290 3461 640948259 640948088 2.220000e-69 274.0
45 TraesCS1B01G236400 chr4D 96.450 169 6 0 3288 3456 46028533 46028701 4.770000e-71 279.0
46 TraesCS1B01G236400 chr4D 87.302 63 8 0 4554 4616 481170990 481170928 8.690000e-09 73.1
47 TraesCS1B01G236400 chr5D 94.857 175 9 0 3284 3458 25040152 25039978 2.220000e-69 274.0
48 TraesCS1B01G236400 chr5D 96.296 54 2 0 1 54 440660837 440660784 8.620000e-14 89.8
49 TraesCS1B01G236400 chrUn 90.476 147 11 2 332 478 38584149 38584292 2.300000e-44 191.0
50 TraesCS1B01G236400 chrUn 90.476 147 11 2 332 478 38604655 38604798 2.300000e-44 191.0
51 TraesCS1B01G236400 chrUn 90.476 147 11 2 332 478 309946613 309946756 2.300000e-44 191.0
52 TraesCS1B01G236400 chrUn 90.972 144 10 2 335 478 354344643 354344503 2.300000e-44 191.0
53 TraesCS1B01G236400 chrUn 95.918 49 2 0 4554 4602 48473170 48473122 5.190000e-11 80.5
54 TraesCS1B01G236400 chr3B 90.972 144 10 2 335 478 41086503 41086363 2.300000e-44 191.0
55 TraesCS1B01G236400 chr3B 90.972 144 10 2 335 478 41106978 41106838 2.300000e-44 191.0
56 TraesCS1B01G236400 chr3B 90.972 144 10 2 335 478 41127167 41127027 2.300000e-44 191.0
57 TraesCS1B01G236400 chr4A 86.667 90 9 1 2712 2801 532402095 532402181 5.150000e-16 97.1
58 TraesCS1B01G236400 chr4A 92.727 55 3 1 1 54 697731427 697731373 1.870000e-10 78.7
59 TraesCS1B01G236400 chr4A 92.727 55 3 1 1 54 697746567 697746513 1.870000e-10 78.7
60 TraesCS1B01G236400 chr3A 96.296 54 1 1 2 54 713941768 713941821 3.100000e-13 87.9
61 TraesCS1B01G236400 chr4B 94.545 55 2 1 1 54 493789268 493789322 4.010000e-12 84.2
62 TraesCS1B01G236400 chr2D 94.000 50 3 0 4554 4603 566989051 566989100 6.710000e-10 76.8
63 TraesCS1B01G236400 chr2A 94.000 50 3 0 4554 4603 706752954 706753003 6.710000e-10 76.8
64 TraesCS1B01G236400 chr3D 88.060 67 2 6 4551 4613 520220560 520220496 2.410000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G236400 chr1B 423587971 423594216 6245 True 11535.000000 11535 100.000 1 6246 1 chr1B.!!$R1 6245
1 TraesCS1B01G236400 chr1D 313211153 313217086 5933 True 2896.000000 4434 94.152 55 6246 3 chr1D.!!$R2 6191
2 TraesCS1B01G236400 chr1A 392781806 392786971 5165 True 1186.566667 3206 92.615 775 6245 6 chr1A.!!$R3 5470
3 TraesCS1B01G236400 chr6D 16190803 16196719 5916 True 976.500000 1531 83.238 996 5241 2 chr6D.!!$R4 4245
4 TraesCS1B01G236400 chr6D 16380527 16381100 573 False 460.000000 460 81.293 4655 5238 1 chr6D.!!$F1 583
5 TraesCS1B01G236400 chr6A 16459048 16460734 1686 True 1441.000000 1441 82.366 999 2714 1 chr6A.!!$R1 1715
6 TraesCS1B01G236400 chr6B 27943347 27944703 1356 True 1341.000000 1341 84.868 1379 2715 1 chr6B.!!$R1 1336
7 TraesCS1B01G236400 chr6B 28002497 28006145 3648 False 875.000000 1339 82.256 996 5238 2 chr6B.!!$F2 4242
8 TraesCS1B01G236400 chr6B 27995840 27996539 699 False 299.000000 300 84.424 1372 1991 2 chr6B.!!$F1 619
9 TraesCS1B01G236400 chr2B 46600546 46602134 1588 True 1295.000000 1295 81.851 996 2597 1 chr2B.!!$R1 1601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.036732 ATGGAGCAGCTCAAACCGAA 59.963 50.0 24.09 0.76 31.08 4.30 F
438 439 0.109226 ACCGAACTCTGTAGCTTCGC 60.109 55.0 0.00 0.00 36.14 4.70 F
445 446 0.109272 TCTGTAGCTTCGCGGAGTTG 60.109 55.0 17.40 0.00 0.00 3.16 F
447 448 0.109272 TGTAGCTTCGCGGAGTTGAG 60.109 55.0 17.40 1.49 0.00 3.02 F
459 460 0.172352 GAGTTGAGCGGAGTGGAGAG 59.828 60.0 0.00 0.00 0.00 3.20 F
460 461 0.251386 AGTTGAGCGGAGTGGAGAGA 60.251 55.0 0.00 0.00 0.00 3.10 F
464 465 0.387565 GAGCGGAGTGGAGAGATTCC 59.612 60.0 0.00 0.00 46.98 3.01 F
1949 2096 0.547471 TGGACAGGCATCTTGGGAGA 60.547 55.0 0.00 0.00 36.09 3.71 F
2051 2198 1.369091 CTGGGTCCATAGCACAACGC 61.369 60.0 0.00 0.00 42.91 4.84 F
4273 7527 0.250901 CTTGGCAGTAGTTGGTGGCT 60.251 55.0 0.00 0.00 39.88 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1896 0.034896 TCAACCCTTCGCCTGTCTTC 59.965 55.000 0.00 0.0 0.00 2.87 R
1879 2026 1.227383 CCCTCCATTGCCCACCTAC 59.773 63.158 0.00 0.0 0.00 3.18 R
2051 2198 3.548770 TGAAGGAAGCTGCAATCCTATG 58.451 45.455 22.26 0.0 45.33 2.23 R
2693 2864 7.182568 AGGGAGTAGATAGTACCATAGTAGTCC 59.817 44.444 0.00 7.8 33.97 3.85 R
2726 2902 9.112725 ACTAAAACCACGACACTTATTTTAACT 57.887 29.630 0.00 0.0 0.00 2.24 R
2784 2960 7.224949 GCTACCATAATACTTCCTCTGTTTCAC 59.775 40.741 0.00 0.0 0.00 3.18 R
2785 2961 7.272978 GCTACCATAATACTTCCTCTGTTTCA 58.727 38.462 0.00 0.0 0.00 2.69 R
3455 6553 0.038159 GAGTTGCTCTACAGCCGTGT 60.038 55.000 0.00 0.0 46.26 4.49 R
4327 7581 0.034059 GCTCCCTCCATGGTATGTCG 59.966 60.000 12.58 0.0 0.00 4.35 R
6125 9488 1.153289 CCAAGATCACCCGCTCCAG 60.153 63.158 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.492604 ACCATGTCGGGTTTGTGG 57.507 55.556 0.00 0.00 38.19 4.17
25 26 1.901464 ACCATGTCGGGTTTGTGGC 60.901 57.895 0.00 0.00 38.19 5.01
26 27 2.560861 CATGTCGGGTTTGTGGCG 59.439 61.111 0.00 0.00 0.00 5.69
27 28 1.963855 CATGTCGGGTTTGTGGCGA 60.964 57.895 0.00 0.00 0.00 5.54
28 29 1.964373 ATGTCGGGTTTGTGGCGAC 60.964 57.895 0.00 0.00 0.00 5.19
29 30 3.351416 GTCGGGTTTGTGGCGACC 61.351 66.667 0.00 0.00 35.14 4.79
30 31 3.862991 TCGGGTTTGTGGCGACCA 61.863 61.111 0.00 0.00 37.68 4.02
31 32 2.671619 CGGGTTTGTGGCGACCAT 60.672 61.111 0.00 0.00 37.68 3.55
32 33 2.961768 GGGTTTGTGGCGACCATG 59.038 61.111 0.00 0.00 37.68 3.66
33 34 2.635443 GGGTTTGTGGCGACCATGG 61.635 63.158 11.19 11.19 37.68 3.66
34 35 2.258286 GTTTGTGGCGACCATGGC 59.742 61.111 13.04 3.65 35.28 4.40
35 36 2.115052 TTTGTGGCGACCATGGCT 59.885 55.556 13.04 0.00 35.28 4.75
36 37 0.958382 GTTTGTGGCGACCATGGCTA 60.958 55.000 13.04 0.00 35.28 3.93
37 38 0.250945 TTTGTGGCGACCATGGCTAA 60.251 50.000 13.04 0.00 35.28 3.09
38 39 0.958382 TTGTGGCGACCATGGCTAAC 60.958 55.000 13.04 4.17 35.28 2.34
39 40 1.376683 GTGGCGACCATGGCTAACA 60.377 57.895 13.04 3.45 35.28 2.41
40 41 0.958382 GTGGCGACCATGGCTAACAA 60.958 55.000 13.04 0.00 35.28 2.83
41 42 0.958382 TGGCGACCATGGCTAACAAC 60.958 55.000 13.04 0.00 35.06 3.32
42 43 0.958382 GGCGACCATGGCTAACAACA 60.958 55.000 13.04 0.00 0.00 3.33
43 44 0.878416 GCGACCATGGCTAACAACAA 59.122 50.000 13.04 0.00 0.00 2.83
44 45 1.401018 GCGACCATGGCTAACAACAAC 60.401 52.381 13.04 0.00 0.00 3.32
45 46 1.199097 CGACCATGGCTAACAACAACC 59.801 52.381 13.04 0.00 0.00 3.77
46 47 2.514803 GACCATGGCTAACAACAACCT 58.485 47.619 13.04 0.00 0.00 3.50
47 48 3.681593 GACCATGGCTAACAACAACCTA 58.318 45.455 13.04 0.00 0.00 3.08
48 49 3.686016 ACCATGGCTAACAACAACCTAG 58.314 45.455 13.04 0.00 0.00 3.02
49 50 3.016736 CCATGGCTAACAACAACCTAGG 58.983 50.000 7.41 7.41 0.00 3.02
50 51 2.871096 TGGCTAACAACAACCTAGGG 57.129 50.000 14.81 0.00 0.00 3.53
51 52 2.340731 TGGCTAACAACAACCTAGGGA 58.659 47.619 14.81 0.00 0.00 4.20
52 53 2.916934 TGGCTAACAACAACCTAGGGAT 59.083 45.455 14.81 0.00 0.00 3.85
53 54 3.332485 TGGCTAACAACAACCTAGGGATT 59.668 43.478 14.81 0.83 0.00 3.01
103 104 1.909376 TAGAATGTCGCTCGCAAGAC 58.091 50.000 0.00 0.00 45.01 3.01
167 168 2.979678 TGAAGAGGTGAAAGGGCTACTT 59.020 45.455 0.00 0.00 42.52 2.24
169 170 2.621070 AGAGGTGAAAGGGCTACTTCA 58.379 47.619 0.00 0.00 38.85 3.02
199 200 2.719705 TGGGGTTTAGAGTCATTTGGGT 59.280 45.455 0.00 0.00 0.00 4.51
211 212 1.024579 ATTTGGGTGTGTCGATCGGC 61.025 55.000 13.98 13.98 0.00 5.54
227 228 4.436523 CGATCGGCGAATAAATTTTTGACC 59.563 41.667 15.93 0.00 44.57 4.02
288 289 6.768381 TGTAAAAATTGATTTGGGGTTTCACC 59.232 34.615 0.00 0.00 37.60 4.02
326 327 0.180406 GGTGGCATCGGATTGTAGGT 59.820 55.000 0.00 0.00 0.00 3.08
340 341 4.344359 TTGTAGGTGACAATGTAGTGCA 57.656 40.909 0.00 0.00 43.30 4.57
341 342 4.551702 TGTAGGTGACAATGTAGTGCAT 57.448 40.909 0.00 0.00 40.03 3.96
342 343 4.252878 TGTAGGTGACAATGTAGTGCATG 58.747 43.478 0.00 0.00 37.96 4.06
343 344 3.423539 AGGTGACAATGTAGTGCATGT 57.576 42.857 0.00 0.00 37.96 3.21
344 345 3.754965 AGGTGACAATGTAGTGCATGTT 58.245 40.909 0.00 0.00 37.96 2.71
345 346 3.753272 AGGTGACAATGTAGTGCATGTTC 59.247 43.478 0.00 0.00 37.96 3.18
346 347 3.424829 GGTGACAATGTAGTGCATGTTCG 60.425 47.826 0.00 0.00 37.96 3.95
347 348 2.741517 TGACAATGTAGTGCATGTTCGG 59.258 45.455 0.00 0.00 37.96 4.30
348 349 2.742053 GACAATGTAGTGCATGTTCGGT 59.258 45.455 0.00 0.00 37.96 4.69
349 350 3.146066 ACAATGTAGTGCATGTTCGGTT 58.854 40.909 0.00 0.00 37.96 4.44
350 351 3.568007 ACAATGTAGTGCATGTTCGGTTT 59.432 39.130 0.00 0.00 37.96 3.27
351 352 4.158384 CAATGTAGTGCATGTTCGGTTTC 58.842 43.478 0.00 0.00 37.96 2.78
352 353 3.120321 TGTAGTGCATGTTCGGTTTCT 57.880 42.857 0.00 0.00 0.00 2.52
353 354 3.064207 TGTAGTGCATGTTCGGTTTCTC 58.936 45.455 0.00 0.00 0.00 2.87
354 355 2.550830 AGTGCATGTTCGGTTTCTCT 57.449 45.000 0.00 0.00 0.00 3.10
355 356 2.417719 AGTGCATGTTCGGTTTCTCTC 58.582 47.619 0.00 0.00 0.00 3.20
356 357 1.464997 GTGCATGTTCGGTTTCTCTCC 59.535 52.381 0.00 0.00 0.00 3.71
358 359 0.721718 CATGTTCGGTTTCTCTCCGC 59.278 55.000 0.00 0.00 46.49 5.54
359 360 0.608640 ATGTTCGGTTTCTCTCCGCT 59.391 50.000 0.00 0.00 46.49 5.52
360 361 0.038526 TGTTCGGTTTCTCTCCGCTC 60.039 55.000 0.00 0.00 46.49 5.03
361 362 0.736672 GTTCGGTTTCTCTCCGCTCC 60.737 60.000 0.00 0.00 46.49 4.70
362 363 1.885163 TTCGGTTTCTCTCCGCTCCC 61.885 60.000 0.00 0.00 46.49 4.30
363 364 2.184579 GGTTTCTCTCCGCTCCCG 59.815 66.667 0.00 0.00 0.00 5.14
364 365 2.509561 GTTTCTCTCCGCTCCCGC 60.510 66.667 0.00 0.00 0.00 6.13
374 375 4.863925 GCTCCCGCGACTCAGCTC 62.864 72.222 8.23 0.00 34.40 4.09
375 376 4.200283 CTCCCGCGACTCAGCTCC 62.200 72.222 8.23 0.00 34.40 4.70
380 381 4.200283 GCGACTCAGCTCCCGGAG 62.200 72.222 10.41 10.41 38.94 4.63
393 394 4.577246 CGGAGCGGAGTAGGCTGC 62.577 72.222 0.00 0.00 44.31 5.25
397 398 4.457496 GCGGAGTAGGCTGCTGCA 62.457 66.667 22.46 0.88 41.91 4.41
398 399 2.202851 CGGAGTAGGCTGCTGCAG 60.203 66.667 24.80 24.80 41.91 4.41
410 411 3.146618 CTGCTGCAGCTTTTTATGGAG 57.853 47.619 36.61 19.79 42.66 3.86
411 412 1.203052 TGCTGCAGCTTTTTATGGAGC 59.797 47.619 36.61 11.16 44.23 4.70
412 413 1.203052 GCTGCAGCTTTTTATGGAGCA 59.797 47.619 31.33 0.21 43.59 4.26
413 414 3.146618 CTGCAGCTTTTTATGGAGCAG 57.853 47.619 0.00 2.94 41.31 4.24
414 415 1.918595 GCAGCTTTTTATGGAGCAGC 58.081 50.000 0.00 0.00 42.67 5.25
415 416 1.475682 GCAGCTTTTTATGGAGCAGCT 59.524 47.619 0.00 0.00 44.78 4.24
416 417 2.479219 GCAGCTTTTTATGGAGCAGCTC 60.479 50.000 14.69 14.69 44.78 4.09
417 418 2.751259 CAGCTTTTTATGGAGCAGCTCA 59.249 45.455 24.09 10.57 38.82 4.26
418 419 3.192001 CAGCTTTTTATGGAGCAGCTCAA 59.808 43.478 24.09 14.05 38.82 3.02
419 420 3.828451 AGCTTTTTATGGAGCAGCTCAAA 59.172 39.130 24.09 12.88 41.31 2.69
420 421 3.922850 GCTTTTTATGGAGCAGCTCAAAC 59.077 43.478 24.09 7.45 38.73 2.93
421 422 4.488879 CTTTTTATGGAGCAGCTCAAACC 58.511 43.478 24.09 7.85 31.08 3.27
422 423 1.737838 TTATGGAGCAGCTCAAACCG 58.262 50.000 24.09 0.00 31.08 4.44
423 424 0.901827 TATGGAGCAGCTCAAACCGA 59.098 50.000 24.09 0.00 31.08 4.69
424 425 0.036732 ATGGAGCAGCTCAAACCGAA 59.963 50.000 24.09 0.76 31.08 4.30
425 426 0.884704 TGGAGCAGCTCAAACCGAAC 60.885 55.000 24.09 4.49 31.08 3.95
426 427 0.603975 GGAGCAGCTCAAACCGAACT 60.604 55.000 24.09 0.00 31.08 3.01
427 428 0.793250 GAGCAGCTCAAACCGAACTC 59.207 55.000 18.17 0.00 0.00 3.01
428 429 0.394565 AGCAGCTCAAACCGAACTCT 59.605 50.000 0.00 0.00 0.00 3.24
429 430 0.514691 GCAGCTCAAACCGAACTCTG 59.485 55.000 0.00 0.00 0.00 3.35
430 431 1.871080 CAGCTCAAACCGAACTCTGT 58.129 50.000 0.00 0.00 0.00 3.41
431 432 2.866460 GCAGCTCAAACCGAACTCTGTA 60.866 50.000 0.00 0.00 0.00 2.74
432 433 2.989840 CAGCTCAAACCGAACTCTGTAG 59.010 50.000 0.00 0.00 0.00 2.74
433 434 1.727335 GCTCAAACCGAACTCTGTAGC 59.273 52.381 0.00 0.00 0.00 3.58
434 435 2.610727 GCTCAAACCGAACTCTGTAGCT 60.611 50.000 0.00 0.00 0.00 3.32
435 436 3.654414 CTCAAACCGAACTCTGTAGCTT 58.346 45.455 0.00 0.00 0.00 3.74
436 437 3.650139 TCAAACCGAACTCTGTAGCTTC 58.350 45.455 0.00 0.00 0.00 3.86
437 438 2.349297 AACCGAACTCTGTAGCTTCG 57.651 50.000 0.00 0.00 36.68 3.79
438 439 0.109226 ACCGAACTCTGTAGCTTCGC 60.109 55.000 0.00 0.00 36.14 4.70
439 440 1.134530 CCGAACTCTGTAGCTTCGCG 61.135 60.000 0.00 0.00 36.14 5.87
440 441 1.134530 CGAACTCTGTAGCTTCGCGG 61.135 60.000 6.13 0.00 33.10 6.46
441 442 0.170561 GAACTCTGTAGCTTCGCGGA 59.829 55.000 6.13 0.00 0.00 5.54
442 443 0.171455 AACTCTGTAGCTTCGCGGAG 59.829 55.000 10.99 10.99 0.00 4.63
443 444 0.961358 ACTCTGTAGCTTCGCGGAGT 60.961 55.000 17.40 16.49 0.00 3.85
444 445 0.171455 CTCTGTAGCTTCGCGGAGTT 59.829 55.000 17.40 13.40 0.00 3.01
445 446 0.109272 TCTGTAGCTTCGCGGAGTTG 60.109 55.000 17.40 0.00 0.00 3.16
446 447 0.109272 CTGTAGCTTCGCGGAGTTGA 60.109 55.000 17.40 0.22 0.00 3.18
447 448 0.109272 TGTAGCTTCGCGGAGTTGAG 60.109 55.000 17.40 1.49 0.00 3.02
448 449 1.153823 TAGCTTCGCGGAGTTGAGC 60.154 57.895 17.40 11.18 0.00 4.26
454 455 2.811317 GCGGAGTTGAGCGGAGTG 60.811 66.667 0.00 0.00 0.00 3.51
455 456 2.125912 CGGAGTTGAGCGGAGTGG 60.126 66.667 0.00 0.00 0.00 4.00
456 457 2.636412 CGGAGTTGAGCGGAGTGGA 61.636 63.158 0.00 0.00 0.00 4.02
457 458 1.216710 GGAGTTGAGCGGAGTGGAG 59.783 63.158 0.00 0.00 0.00 3.86
458 459 1.251527 GGAGTTGAGCGGAGTGGAGA 61.252 60.000 0.00 0.00 0.00 3.71
459 460 0.172352 GAGTTGAGCGGAGTGGAGAG 59.828 60.000 0.00 0.00 0.00 3.20
460 461 0.251386 AGTTGAGCGGAGTGGAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
461 462 0.820871 GTTGAGCGGAGTGGAGAGAT 59.179 55.000 0.00 0.00 0.00 2.75
462 463 1.205893 GTTGAGCGGAGTGGAGAGATT 59.794 52.381 0.00 0.00 0.00 2.40
463 464 1.107114 TGAGCGGAGTGGAGAGATTC 58.893 55.000 0.00 0.00 0.00 2.52
464 465 0.387565 GAGCGGAGTGGAGAGATTCC 59.612 60.000 0.00 0.00 46.98 3.01
473 474 1.756430 GGAGAGATTCCAAACAGGGC 58.244 55.000 0.00 0.00 46.01 5.19
474 475 1.683319 GGAGAGATTCCAAACAGGGCC 60.683 57.143 0.00 0.00 46.01 5.80
500 501 3.843893 AAAGCTGCAACAATTTCCCTT 57.156 38.095 1.02 0.00 0.00 3.95
526 529 5.343307 AAAGATGCAACAAGTTTCCAACT 57.657 34.783 0.00 0.00 45.46 3.16
567 570 2.408050 GAATTCTCACGTGTGCAGAGT 58.592 47.619 16.51 5.19 0.00 3.24
608 611 1.765314 CTGCTATGGTAGGCCTGAACT 59.235 52.381 17.99 0.00 35.27 3.01
681 701 2.441532 CCCTTCTCCCCTACGCGA 60.442 66.667 15.93 0.00 0.00 5.87
891 914 4.228567 GCCGGCCTCTACCTCTGC 62.229 72.222 18.11 0.00 0.00 4.26
956 979 4.681942 GCATCTTATAGCTAACACCGACAG 59.318 45.833 0.00 0.00 0.00 3.51
1161 1187 3.545574 TGCTCCGCTGTCCACACA 61.546 61.111 0.00 0.00 0.00 3.72
1256 1282 1.849692 AGCCAACAAAACCCCCAAATT 59.150 42.857 0.00 0.00 0.00 1.82
1317 1343 4.463879 CCCCCTGCTGCGACTGAG 62.464 72.222 0.00 0.00 0.00 3.35
1624 1691 4.504864 CCAGTGGAGGTGTCAATTTACTCA 60.505 45.833 1.68 0.00 0.00 3.41
1729 1875 3.814504 AGAGGTGAAATGTGAATGGGT 57.185 42.857 0.00 0.00 0.00 4.51
1749 1896 3.386867 GATGAAGCCTTGCCACGCG 62.387 63.158 3.53 3.53 0.00 6.01
1879 2026 2.035193 CCATCCTACCGACTGACATCTG 59.965 54.545 0.00 0.00 0.00 2.90
1939 2086 0.759959 TTTACCGAAGTGGACAGGCA 59.240 50.000 0.00 0.00 42.00 4.75
1949 2096 0.547471 TGGACAGGCATCTTGGGAGA 60.547 55.000 0.00 0.00 36.09 3.71
2051 2198 1.369091 CTGGGTCCATAGCACAACGC 61.369 60.000 0.00 0.00 42.91 4.84
2610 2780 2.894126 AGTCTCATCCTTATACTGCCCG 59.106 50.000 0.00 0.00 0.00 6.13
2624 2794 3.758425 ACTGCCCGTTAGTGGTTTATTT 58.242 40.909 0.00 0.00 0.00 1.40
2625 2795 3.504520 ACTGCCCGTTAGTGGTTTATTTG 59.495 43.478 0.00 0.00 0.00 2.32
2693 2864 5.010516 AGTGCAGTAGCTATGTCATAAGAGG 59.989 44.000 0.00 0.00 42.74 3.69
2722 2898 7.023171 ACTATGGTACTATCTACTCCCTCTG 57.977 44.000 0.00 0.00 0.00 3.35
2723 2899 5.933846 ATGGTACTATCTACTCCCTCTGT 57.066 43.478 0.00 0.00 0.00 3.41
2724 2900 5.728937 TGGTACTATCTACTCCCTCTGTT 57.271 43.478 0.00 0.00 0.00 3.16
2725 2901 6.836714 TGGTACTATCTACTCCCTCTGTTA 57.163 41.667 0.00 0.00 0.00 2.41
2726 2902 7.217028 TGGTACTATCTACTCCCTCTGTTAA 57.783 40.000 0.00 0.00 0.00 2.01
2879 5618 2.352225 CGCTAGTCTATCTCACCATGGC 60.352 54.545 13.04 0.00 0.00 4.40
2946 5692 8.956426 CATAGCTGTATTTCAACCTTTTAGGAA 58.044 33.333 0.00 0.00 37.67 3.36
3043 5795 1.412079 TGCATGGAGTTTGTGGCTTT 58.588 45.000 0.00 0.00 0.00 3.51
3154 5909 9.515226 TCTAATAACACTAGGCTTGAACATTTT 57.485 29.630 2.20 0.00 0.00 1.82
3155 5910 9.774742 CTAATAACACTAGGCTTGAACATTTTC 57.225 33.333 2.20 0.00 0.00 2.29
3258 6356 8.777578 TTACCTCTGGATTGTAAGCTATTCTA 57.222 34.615 0.00 0.00 0.00 2.10
3300 6398 5.887754 AGAGAGTTCTGATATACTCCCTCC 58.112 45.833 4.74 0.00 41.31 4.30
3301 6399 4.658063 AGAGTTCTGATATACTCCCTCCG 58.342 47.826 4.74 0.00 41.31 4.63
3302 6400 4.105057 AGAGTTCTGATATACTCCCTCCGT 59.895 45.833 4.74 0.00 41.31 4.69
3303 6401 4.805744 AGTTCTGATATACTCCCTCCGTT 58.194 43.478 0.00 0.00 0.00 4.44
3304 6402 4.828387 AGTTCTGATATACTCCCTCCGTTC 59.172 45.833 0.00 0.00 0.00 3.95
3305 6403 3.764218 TCTGATATACTCCCTCCGTTCC 58.236 50.000 0.00 0.00 0.00 3.62
3306 6404 3.398292 TCTGATATACTCCCTCCGTTCCT 59.602 47.826 0.00 0.00 0.00 3.36
3307 6405 4.600547 TCTGATATACTCCCTCCGTTCCTA 59.399 45.833 0.00 0.00 0.00 2.94
3308 6406 5.074102 TCTGATATACTCCCTCCGTTCCTAA 59.926 44.000 0.00 0.00 0.00 2.69
3309 6407 5.708544 TGATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
3310 6408 6.320518 TGATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
3311 6409 7.472741 TGATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
3312 6410 8.120538 TGATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
3313 6411 9.638176 GATATACTCCCTCCGTTCCTAAATATA 57.362 37.037 0.00 0.00 0.00 0.86
3315 6413 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3316 6414 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3317 6415 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3318 6416 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3319 6417 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3320 6418 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3321 6419 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3322 6420 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3359 6457 7.727578 TGGATTACCACATACGGATGTATAT 57.272 36.000 14.23 4.37 44.82 0.86
3360 6458 8.826293 TGGATTACCACATACGGATGTATATA 57.174 34.615 14.23 3.33 44.82 0.86
3361 6459 8.909923 TGGATTACCACATACGGATGTATATAG 58.090 37.037 14.23 0.00 44.82 1.31
3362 6460 9.128404 GGATTACCACATACGGATGTATATAGA 57.872 37.037 14.23 0.00 44.82 1.98
3363 6461 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
3364 6462 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
3365 6463 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3367 6465 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3397 6495 7.516198 AGTGTAAATTCACTCATTTTGCTCT 57.484 32.000 0.00 0.00 44.07 4.09
3398 6496 7.365741 AGTGTAAATTCACTCATTTTGCTCTG 58.634 34.615 0.00 0.00 44.07 3.35
3399 6497 7.013655 AGTGTAAATTCACTCATTTTGCTCTGT 59.986 33.333 0.00 0.00 44.07 3.41
3400 6498 8.289618 GTGTAAATTCACTCATTTTGCTCTGTA 58.710 33.333 0.00 0.00 35.68 2.74
3401 6499 9.013229 TGTAAATTCACTCATTTTGCTCTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
3402 6500 9.282247 GTAAATTCACTCATTTTGCTCTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
3403 6501 7.458409 AATTCACTCATTTTGCTCTGTATGT 57.542 32.000 0.00 0.00 0.00 2.29
3404 6502 8.565896 AATTCACTCATTTTGCTCTGTATGTA 57.434 30.769 0.00 0.00 0.00 2.29
3405 6503 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
3406 6504 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
3407 6505 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
3408 6506 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
3409 6507 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
3410 6508 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
3411 6509 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
3412 6510 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
3413 6511 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
3414 6512 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
3415 6513 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
3416 6514 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
3417 6515 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
3418 6516 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
3419 6517 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
3420 6518 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
3421 6519 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
3422 6520 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
3423 6521 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
3424 6522 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3425 6523 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3426 6524 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3427 6525 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3428 6526 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3429 6527 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3430 6528 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3431 6529 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3432 6530 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3433 6531 8.997323 CACTTGTTGAAATCTCTAGAAAGACAT 58.003 33.333 0.00 0.00 0.00 3.06
3450 6548 8.368668 AGAAAGACATATATTTAGGAACGGAGG 58.631 37.037 0.00 0.00 0.00 4.30
3451 6549 6.607004 AGACATATATTTAGGAACGGAGGG 57.393 41.667 0.00 0.00 0.00 4.30
3452 6550 6.320518 AGACATATATTTAGGAACGGAGGGA 58.679 40.000 0.00 0.00 0.00 4.20
3453 6551 6.437793 AGACATATATTTAGGAACGGAGGGAG 59.562 42.308 0.00 0.00 0.00 4.30
3454 6552 6.082707 ACATATATTTAGGAACGGAGGGAGT 58.917 40.000 0.00 0.00 0.00 3.85
3455 6553 7.243824 ACATATATTTAGGAACGGAGGGAGTA 58.756 38.462 0.00 0.00 0.00 2.59
3456 6554 7.178097 ACATATATTTAGGAACGGAGGGAGTAC 59.822 40.741 0.00 0.00 0.00 2.73
3522 6645 7.573968 AGACAAAACTGCACTTCTATCTTTT 57.426 32.000 0.00 0.00 0.00 2.27
3876 7128 7.623630 CAAAGATATTGTTTTCCCTGGGATTT 58.376 34.615 17.93 7.02 0.00 2.17
3943 7195 4.510038 TGTACAAAGGACGAGAGGTAAC 57.490 45.455 0.00 0.00 0.00 2.50
3980 7232 4.593597 TTGTTGTCAACTCTTGTTCGTC 57.406 40.909 16.45 0.00 33.52 4.20
4024 7276 6.262944 AGCTGTAGTGTCTCTCTCTATGATTG 59.737 42.308 0.00 0.00 0.00 2.67
4082 7334 1.134670 CCGACTCCTCAAATCCTCACC 60.135 57.143 0.00 0.00 0.00 4.02
4108 7360 8.879759 CGTAATCTTATTTTGTCTTGGCTCTAA 58.120 33.333 0.00 0.00 0.00 2.10
4159 7413 8.678199 GGATTAGTTGCTTTGAAGTTATTAGCT 58.322 33.333 0.00 0.00 33.15 3.32
4211 7465 0.910088 AAGGTGTCCCTAGGCACTCC 60.910 60.000 15.11 15.11 41.56 3.85
4247 7501 1.434555 CAATAGGCGACGGTCAAACA 58.565 50.000 9.10 0.00 0.00 2.83
4248 7502 1.393539 CAATAGGCGACGGTCAAACAG 59.606 52.381 9.10 0.00 0.00 3.16
4263 7517 1.358152 AACAGGTAGCCTTGGCAGTA 58.642 50.000 14.54 0.00 0.00 2.74
4273 7527 0.250901 CTTGGCAGTAGTTGGTGGCT 60.251 55.000 0.00 0.00 39.88 4.75
4327 7581 2.270959 CCTTTTCTGGCAGGGAAGC 58.729 57.895 15.73 0.00 0.00 3.86
4337 7591 0.179045 GCAGGGAAGCGACATACCAT 60.179 55.000 0.00 0.00 0.00 3.55
4376 7630 7.325821 TGTTACTTGCAAGAAAATTGCTATTCG 59.674 33.333 32.50 1.38 45.13 3.34
4422 7676 8.408043 TCACCACATATTGATTTTCAACTTCT 57.592 30.769 0.00 0.00 39.45 2.85
4552 7809 6.849697 ACTCCCTCAGGTCCATATTAATTGTA 59.150 38.462 0.00 0.00 0.00 2.41
4903 8197 5.679734 ATGGAGTGATGAATAAACGATGC 57.320 39.130 0.00 0.00 0.00 3.91
4955 8252 2.651382 TTCTGCATCATCATCAGGGG 57.349 50.000 0.00 0.00 0.00 4.79
4981 8278 5.449177 GCAAAGGATTAAGTCGGAAATGGAG 60.449 44.000 0.00 0.00 0.00 3.86
5032 8329 2.514458 AGTGGCTTAGGTCAAATGGG 57.486 50.000 0.00 0.00 0.00 4.00
5248 8545 5.698545 GCAGAATCCACCTATTAGCTAAGTG 59.301 44.000 12.54 13.64 0.00 3.16
5373 8681 0.894141 TGTTGTACCATGCCAATGCC 59.106 50.000 0.00 0.00 36.33 4.40
5374 8682 0.894141 GTTGTACCATGCCAATGCCA 59.106 50.000 0.00 0.00 36.33 4.92
5375 8683 1.274728 GTTGTACCATGCCAATGCCAA 59.725 47.619 0.00 0.00 36.33 4.52
5376 8684 1.863325 TGTACCATGCCAATGCCAAT 58.137 45.000 0.00 0.00 36.33 3.16
5377 8685 1.481363 TGTACCATGCCAATGCCAATG 59.519 47.619 0.00 0.00 36.33 2.82
5492 8814 2.919856 AGCACCACGCCAGTCTCT 60.920 61.111 0.00 0.00 44.04 3.10
5520 8854 5.066246 CAGGGAAATTTTGCACACAACATTT 59.934 36.000 2.98 3.33 44.72 2.32
5570 8904 5.509832 AAAGGAGTTAAAACCCCGTCTAT 57.490 39.130 0.00 0.00 31.17 1.98
5572 8906 3.199289 AGGAGTTAAAACCCCGTCTATGG 59.801 47.826 0.00 0.00 31.17 2.74
5597 8931 1.209504 TGATTTCCTGTAGAAGCCCCG 59.790 52.381 0.00 0.00 35.40 5.73
5604 8938 2.434702 CCTGTAGAAGCCCCGTAATCTT 59.565 50.000 0.00 0.00 0.00 2.40
5621 8955 2.040213 CTTAGACCTGCATTGCGGCG 62.040 60.000 12.16 0.51 36.28 6.46
5623 8957 4.465512 GACCTGCATTGCGGCGTG 62.466 66.667 12.16 0.00 36.28 5.34
5648 8982 2.717390 TCCACATATCCACCAAAACCG 58.283 47.619 0.00 0.00 0.00 4.44
5673 9007 2.029110 GGTTATGGCAAATGCACACACT 60.029 45.455 7.80 0.00 44.36 3.55
5751 9108 0.476771 CCTGTACCCCGGGCAATAAT 59.523 55.000 17.73 0.00 31.20 1.28
5765 9122 5.120208 CGGGCAATAATAATTCCAGTAGTCG 59.880 44.000 0.00 0.00 0.00 4.18
5766 9123 5.106673 GGGCAATAATAATTCCAGTAGTCGC 60.107 44.000 0.00 0.00 0.00 5.19
5773 9130 1.847328 TTCCAGTAGTCGCCTGATCA 58.153 50.000 0.00 0.00 31.38 2.92
5788 9145 4.457603 GCCTGATCAGTAGTCGATGAGTAT 59.542 45.833 21.11 0.00 0.00 2.12
5807 9164 0.107897 TGCCGCATCGACATTAACCT 60.108 50.000 0.00 0.00 0.00 3.50
5808 9165 1.014352 GCCGCATCGACATTAACCTT 58.986 50.000 0.00 0.00 0.00 3.50
5809 9166 1.268032 GCCGCATCGACATTAACCTTG 60.268 52.381 0.00 0.00 0.00 3.61
5810 9167 2.276201 CCGCATCGACATTAACCTTGA 58.724 47.619 0.00 0.00 0.00 3.02
5866 9223 2.282290 CCTTGCAGAAAGTGTTTTTGCG 59.718 45.455 9.53 0.00 35.22 4.85
5938 9295 3.374318 CCCTCCTAGTATCCTCCAACTGT 60.374 52.174 0.00 0.00 0.00 3.55
5962 9319 0.969149 TCTCATCAGACAGCAACCGT 59.031 50.000 0.00 0.00 0.00 4.83
5972 9330 2.025418 AGCAACCGTTAAGCCGTCG 61.025 57.895 0.00 0.00 0.00 5.12
5976 9334 0.313672 AACCGTTAAGCCGTCGTACA 59.686 50.000 0.00 0.00 0.00 2.90
6031 9389 5.986135 GCACTAAGATCCTCATGTAAACGAT 59.014 40.000 0.00 0.00 0.00 3.73
6109 9467 3.566322 CGAAGATCCTCGTTCCATCTACT 59.434 47.826 5.53 0.00 34.08 2.57
6119 9482 4.165565 TCGTTCCATCTACTCCCTCTCTAA 59.834 45.833 0.00 0.00 0.00 2.10
6120 9483 4.276431 CGTTCCATCTACTCCCTCTCTAAC 59.724 50.000 0.00 0.00 0.00 2.34
6121 9484 5.202004 GTTCCATCTACTCCCTCTCTAACA 58.798 45.833 0.00 0.00 0.00 2.41
6122 9485 5.055265 TCCATCTACTCCCTCTCTAACAG 57.945 47.826 0.00 0.00 0.00 3.16
6123 9486 4.727332 TCCATCTACTCCCTCTCTAACAGA 59.273 45.833 0.00 0.00 0.00 3.41
6125 9488 4.159244 TCTACTCCCTCTCTAACAGAGC 57.841 50.000 0.00 0.00 46.90 4.09
6217 9583 2.632512 TGCCTACCGATATGATCTTGCA 59.367 45.455 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.901464 GCCACAAACCCGACATGGT 60.901 57.895 0.00 0.00 41.55 3.55
8 9 2.961768 GCCACAAACCCGACATGG 59.038 61.111 0.00 0.00 37.55 3.66
9 10 1.963855 TCGCCACAAACCCGACATG 60.964 57.895 0.00 0.00 0.00 3.21
10 11 2.428187 TCGCCACAAACCCGACAT 59.572 55.556 0.00 0.00 0.00 3.06
13 14 3.185299 ATGGTCGCCACAAACCCGA 62.185 57.895 0.50 0.00 35.80 5.14
14 15 2.671619 ATGGTCGCCACAAACCCG 60.672 61.111 0.50 0.00 35.80 5.28
15 16 2.635443 CCATGGTCGCCACAAACCC 61.635 63.158 2.57 0.00 35.80 4.11
16 17 2.961768 CCATGGTCGCCACAAACC 59.038 61.111 2.57 0.00 35.80 3.27
17 18 0.958382 TAGCCATGGTCGCCACAAAC 60.958 55.000 14.67 0.00 35.80 2.93
18 19 0.250945 TTAGCCATGGTCGCCACAAA 60.251 50.000 14.67 0.00 35.80 2.83
19 20 0.958382 GTTAGCCATGGTCGCCACAA 60.958 55.000 14.67 0.00 35.80 3.33
20 21 1.376683 GTTAGCCATGGTCGCCACA 60.377 57.895 14.67 0.00 35.80 4.17
21 22 0.958382 TTGTTAGCCATGGTCGCCAC 60.958 55.000 14.67 4.31 35.80 5.01
22 23 0.958382 GTTGTTAGCCATGGTCGCCA 60.958 55.000 14.67 2.88 38.19 5.69
23 24 0.958382 TGTTGTTAGCCATGGTCGCC 60.958 55.000 14.67 0.00 0.00 5.54
24 25 0.878416 TTGTTGTTAGCCATGGTCGC 59.122 50.000 14.67 0.00 0.00 5.19
25 26 1.199097 GGTTGTTGTTAGCCATGGTCG 59.801 52.381 14.67 0.00 0.00 4.79
26 27 2.514803 AGGTTGTTGTTAGCCATGGTC 58.485 47.619 14.67 5.80 0.00 4.02
27 28 2.675658 AGGTTGTTGTTAGCCATGGT 57.324 45.000 14.67 2.69 0.00 3.55
28 29 3.016736 CCTAGGTTGTTGTTAGCCATGG 58.983 50.000 7.63 7.63 0.00 3.66
29 30 3.016736 CCCTAGGTTGTTGTTAGCCATG 58.983 50.000 8.29 0.00 0.00 3.66
30 31 2.916934 TCCCTAGGTTGTTGTTAGCCAT 59.083 45.455 8.29 0.00 0.00 4.40
31 32 2.340731 TCCCTAGGTTGTTGTTAGCCA 58.659 47.619 8.29 0.00 0.00 4.75
32 33 3.646736 ATCCCTAGGTTGTTGTTAGCC 57.353 47.619 8.29 0.00 0.00 3.93
33 34 4.332828 ACAATCCCTAGGTTGTTGTTAGC 58.667 43.478 11.12 0.00 35.13 3.09
34 35 6.469410 TGTACAATCCCTAGGTTGTTGTTAG 58.531 40.000 19.63 0.00 39.18 2.34
35 36 6.436738 TGTACAATCCCTAGGTTGTTGTTA 57.563 37.500 19.63 11.20 39.18 2.41
36 37 5.313280 TGTACAATCCCTAGGTTGTTGTT 57.687 39.130 19.63 9.37 39.18 2.83
37 38 4.986054 TGTACAATCCCTAGGTTGTTGT 57.014 40.909 19.63 20.16 39.18 3.32
38 39 7.931578 TTTATGTACAATCCCTAGGTTGTTG 57.068 36.000 19.63 16.37 39.18 3.33
39 40 8.966868 CAATTTATGTACAATCCCTAGGTTGTT 58.033 33.333 19.63 7.78 39.18 2.83
40 41 7.068226 GCAATTTATGTACAATCCCTAGGTTGT 59.932 37.037 18.72 18.72 41.16 3.32
41 42 7.285401 AGCAATTTATGTACAATCCCTAGGTTG 59.715 37.037 8.29 9.25 0.00 3.77
42 43 7.354312 AGCAATTTATGTACAATCCCTAGGTT 58.646 34.615 8.29 0.00 0.00 3.50
43 44 6.911308 AGCAATTTATGTACAATCCCTAGGT 58.089 36.000 8.29 0.00 0.00 3.08
44 45 8.157476 AGTAGCAATTTATGTACAATCCCTAGG 58.843 37.037 0.06 0.06 0.00 3.02
45 46 8.993121 CAGTAGCAATTTATGTACAATCCCTAG 58.007 37.037 0.00 0.00 0.00 3.02
46 47 7.936847 CCAGTAGCAATTTATGTACAATCCCTA 59.063 37.037 0.00 0.00 0.00 3.53
47 48 6.772716 CCAGTAGCAATTTATGTACAATCCCT 59.227 38.462 0.00 0.00 0.00 4.20
48 49 6.770785 TCCAGTAGCAATTTATGTACAATCCC 59.229 38.462 0.00 0.00 0.00 3.85
49 50 7.801716 TCCAGTAGCAATTTATGTACAATCC 57.198 36.000 0.00 0.00 0.00 3.01
50 51 9.884465 GATTCCAGTAGCAATTTATGTACAATC 57.116 33.333 0.00 0.00 0.00 2.67
51 52 8.850156 GGATTCCAGTAGCAATTTATGTACAAT 58.150 33.333 0.00 0.00 0.00 2.71
52 53 7.011950 CGGATTCCAGTAGCAATTTATGTACAA 59.988 37.037 0.00 0.00 0.00 2.41
53 54 6.481976 CGGATTCCAGTAGCAATTTATGTACA 59.518 38.462 0.00 0.00 0.00 2.90
167 168 5.265989 ACTCTAAACCCCACAAAAGTTTGA 58.734 37.500 10.66 0.00 40.55 2.69
169 170 5.265989 TGACTCTAAACCCCACAAAAGTTT 58.734 37.500 0.00 0.00 37.47 2.66
236 237 7.766283 AGCTTATTTCTGCAACCTTTTCTATC 58.234 34.615 0.00 0.00 0.00 2.08
288 289 1.734465 CCTCCTCGCTAACAAAAGCAG 59.266 52.381 0.00 0.00 42.91 4.24
326 327 2.741517 CCGAACATGCACTACATTGTCA 59.258 45.455 0.00 0.00 36.64 3.58
333 334 3.326747 AGAGAAACCGAACATGCACTAC 58.673 45.455 0.00 0.00 0.00 2.73
334 335 3.585862 GAGAGAAACCGAACATGCACTA 58.414 45.455 0.00 0.00 0.00 2.74
335 336 2.417719 GAGAGAAACCGAACATGCACT 58.582 47.619 0.00 0.00 0.00 4.40
336 337 1.464997 GGAGAGAAACCGAACATGCAC 59.535 52.381 0.00 0.00 0.00 4.57
337 338 1.808411 GGAGAGAAACCGAACATGCA 58.192 50.000 0.00 0.00 0.00 3.96
346 347 2.184579 CGGGAGCGGAGAGAAACC 59.815 66.667 0.00 0.00 0.00 3.27
358 359 4.200283 GGAGCTGAGTCGCGGGAG 62.200 72.222 6.13 0.00 34.40 4.30
363 364 4.200283 CTCCGGGAGCTGAGTCGC 62.200 72.222 11.83 0.00 0.00 5.19
376 377 4.577246 GCAGCCTACTCCGCTCCG 62.577 72.222 0.00 0.00 33.17 4.63
377 378 3.151022 AGCAGCCTACTCCGCTCC 61.151 66.667 0.00 0.00 33.17 4.70
378 379 2.105930 CAGCAGCCTACTCCGCTC 59.894 66.667 0.00 0.00 33.17 5.03
379 380 4.154347 GCAGCAGCCTACTCCGCT 62.154 66.667 0.00 0.00 36.91 5.52
380 381 4.457496 TGCAGCAGCCTACTCCGC 62.457 66.667 0.00 0.00 41.13 5.54
381 382 2.202851 CTGCAGCAGCCTACTCCG 60.203 66.667 10.14 0.00 41.13 4.63
390 391 2.734492 GCTCCATAAAAAGCTGCAGCAG 60.734 50.000 38.24 24.03 45.16 4.24
391 392 1.203052 GCTCCATAAAAAGCTGCAGCA 59.797 47.619 38.24 19.65 45.16 4.41
392 393 1.203052 TGCTCCATAAAAAGCTGCAGC 59.797 47.619 31.53 31.53 39.31 5.25
393 394 3.146618 CTGCTCCATAAAAAGCTGCAG 57.853 47.619 10.11 10.11 39.31 4.41
396 397 2.751259 TGAGCTGCTCCATAAAAAGCTG 59.249 45.455 25.61 0.00 44.00 4.24
397 398 3.077484 TGAGCTGCTCCATAAAAAGCT 57.923 42.857 25.61 0.00 46.53 3.74
398 399 3.855689 TTGAGCTGCTCCATAAAAAGC 57.144 42.857 25.61 0.00 39.02 3.51
399 400 4.488879 GGTTTGAGCTGCTCCATAAAAAG 58.511 43.478 25.61 0.00 0.00 2.27
400 401 3.057596 CGGTTTGAGCTGCTCCATAAAAA 60.058 43.478 25.61 15.95 0.00 1.94
401 402 2.487762 CGGTTTGAGCTGCTCCATAAAA 59.512 45.455 25.61 16.29 0.00 1.52
402 403 2.083774 CGGTTTGAGCTGCTCCATAAA 58.916 47.619 25.61 16.63 0.00 1.40
403 404 1.277842 TCGGTTTGAGCTGCTCCATAA 59.722 47.619 25.61 14.50 0.00 1.90
404 405 0.901827 TCGGTTTGAGCTGCTCCATA 59.098 50.000 25.61 9.39 0.00 2.74
405 406 0.036732 TTCGGTTTGAGCTGCTCCAT 59.963 50.000 25.61 0.00 0.00 3.41
406 407 0.884704 GTTCGGTTTGAGCTGCTCCA 60.885 55.000 25.61 13.38 0.00 3.86
407 408 0.603975 AGTTCGGTTTGAGCTGCTCC 60.604 55.000 25.61 10.90 36.71 4.70
408 409 0.793250 GAGTTCGGTTTGAGCTGCTC 59.207 55.000 22.38 22.38 38.39 4.26
409 410 0.394565 AGAGTTCGGTTTGAGCTGCT 59.605 50.000 0.00 0.00 38.39 4.24
410 411 0.514691 CAGAGTTCGGTTTGAGCTGC 59.485 55.000 0.00 0.00 38.39 5.25
411 412 1.871080 ACAGAGTTCGGTTTGAGCTG 58.129 50.000 0.00 0.00 38.39 4.24
412 413 2.610727 GCTACAGAGTTCGGTTTGAGCT 60.611 50.000 0.00 0.00 41.35 4.09
413 414 1.727335 GCTACAGAGTTCGGTTTGAGC 59.273 52.381 0.00 0.00 0.00 4.26
414 415 3.305398 AGCTACAGAGTTCGGTTTGAG 57.695 47.619 0.00 0.00 0.00 3.02
415 416 3.650139 GAAGCTACAGAGTTCGGTTTGA 58.350 45.455 0.00 0.00 0.00 2.69
416 417 2.408704 CGAAGCTACAGAGTTCGGTTTG 59.591 50.000 0.00 0.00 39.48 2.93
417 418 2.673833 CGAAGCTACAGAGTTCGGTTT 58.326 47.619 0.00 0.00 39.48 3.27
418 419 2.349297 CGAAGCTACAGAGTTCGGTT 57.651 50.000 0.00 0.00 39.48 4.44
437 438 2.811317 CACTCCGCTCAACTCCGC 60.811 66.667 0.00 0.00 0.00 5.54
438 439 2.125912 CCACTCCGCTCAACTCCG 60.126 66.667 0.00 0.00 0.00 4.63
439 440 1.216710 CTCCACTCCGCTCAACTCC 59.783 63.158 0.00 0.00 0.00 3.85
440 441 0.172352 CTCTCCACTCCGCTCAACTC 59.828 60.000 0.00 0.00 0.00 3.01
441 442 0.251386 TCTCTCCACTCCGCTCAACT 60.251 55.000 0.00 0.00 0.00 3.16
442 443 0.820871 ATCTCTCCACTCCGCTCAAC 59.179 55.000 0.00 0.00 0.00 3.18
443 444 1.478510 GAATCTCTCCACTCCGCTCAA 59.521 52.381 0.00 0.00 0.00 3.02
444 445 1.107114 GAATCTCTCCACTCCGCTCA 58.893 55.000 0.00 0.00 0.00 4.26
445 446 0.387565 GGAATCTCTCCACTCCGCTC 59.612 60.000 0.00 0.00 44.67 5.03
446 447 2.510664 GGAATCTCTCCACTCCGCT 58.489 57.895 0.00 0.00 44.67 5.52
454 455 1.683319 GGCCCTGTTTGGAATCTCTCC 60.683 57.143 0.00 0.00 45.64 3.71
455 456 1.283321 AGGCCCTGTTTGGAATCTCTC 59.717 52.381 0.00 0.00 38.35 3.20
456 457 1.376649 AGGCCCTGTTTGGAATCTCT 58.623 50.000 0.00 0.00 38.35 3.10
457 458 2.222227 AAGGCCCTGTTTGGAATCTC 57.778 50.000 0.00 0.00 38.35 2.75
458 459 3.825908 TTAAGGCCCTGTTTGGAATCT 57.174 42.857 0.00 0.00 38.35 2.40
459 460 6.538945 TTTATTAAGGCCCTGTTTGGAATC 57.461 37.500 0.00 0.00 38.35 2.52
460 461 5.104941 GCTTTATTAAGGCCCTGTTTGGAAT 60.105 40.000 0.00 0.00 32.83 3.01
461 462 4.221924 GCTTTATTAAGGCCCTGTTTGGAA 59.778 41.667 0.00 0.00 32.83 3.53
462 463 3.767131 GCTTTATTAAGGCCCTGTTTGGA 59.233 43.478 0.00 0.00 32.83 3.53
463 464 3.769300 AGCTTTATTAAGGCCCTGTTTGG 59.231 43.478 0.00 0.00 31.76 3.28
464 465 4.747810 CAGCTTTATTAAGGCCCTGTTTG 58.252 43.478 0.00 0.00 31.76 2.93
465 466 3.195610 GCAGCTTTATTAAGGCCCTGTTT 59.804 43.478 0.00 0.00 31.76 2.83
466 467 2.760650 GCAGCTTTATTAAGGCCCTGTT 59.239 45.455 0.00 0.00 31.76 3.16
467 468 2.291540 TGCAGCTTTATTAAGGCCCTGT 60.292 45.455 0.00 0.00 31.76 4.00
468 469 2.378038 TGCAGCTTTATTAAGGCCCTG 58.622 47.619 0.00 0.00 31.76 4.45
469 470 2.760650 GTTGCAGCTTTATTAAGGCCCT 59.239 45.455 0.00 0.00 31.76 5.19
470 471 2.495669 TGTTGCAGCTTTATTAAGGCCC 59.504 45.455 0.00 0.49 31.76 5.80
471 472 3.866883 TGTTGCAGCTTTATTAAGGCC 57.133 42.857 6.89 0.00 31.76 5.19
472 473 6.183360 GGAAATTGTTGCAGCTTTATTAAGGC 60.183 38.462 1.17 2.48 31.76 4.35
473 474 6.313658 GGGAAATTGTTGCAGCTTTATTAAGG 59.686 38.462 1.17 0.00 31.76 2.69
474 475 7.099120 AGGGAAATTGTTGCAGCTTTATTAAG 58.901 34.615 1.17 0.00 34.36 1.85
537 540 4.755123 ACACGTGAGAATTCGGATTTTCTT 59.245 37.500 25.01 0.00 32.46 2.52
538 541 4.152402 CACACGTGAGAATTCGGATTTTCT 59.848 41.667 25.01 4.04 34.95 2.52
539 542 4.394795 CACACGTGAGAATTCGGATTTTC 58.605 43.478 25.01 0.00 0.00 2.29
540 543 3.364964 GCACACGTGAGAATTCGGATTTT 60.365 43.478 25.01 0.00 0.00 1.82
551 554 0.961753 ATCACTCTGCACACGTGAGA 59.038 50.000 25.01 13.85 40.56 3.27
552 555 2.162408 TCTATCACTCTGCACACGTGAG 59.838 50.000 25.01 16.59 40.56 3.51
567 570 1.410004 CCTTGGGCCGTAGTCTATCA 58.590 55.000 0.00 0.00 0.00 2.15
631 634 2.386660 GCTGAGACTGCGGCAAGAC 61.387 63.158 3.44 0.00 39.93 3.01
632 635 2.047844 GCTGAGACTGCGGCAAGA 60.048 61.111 3.44 0.00 39.93 3.02
633 636 3.485431 CGCTGAGACTGCGGCAAG 61.485 66.667 3.44 0.00 45.40 4.01
661 672 2.433146 GCGTAGGGGAGAAGGGGAC 61.433 68.421 0.00 0.00 0.00 4.46
662 673 2.042230 GCGTAGGGGAGAAGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
663 674 3.537874 CGCGTAGGGGAGAAGGGG 61.538 72.222 0.00 0.00 36.55 4.79
664 675 2.441532 TCGCGTAGGGGAGAAGGG 60.442 66.667 5.77 0.00 42.39 3.95
667 678 1.925285 TAGGGTCGCGTAGGGGAGAA 61.925 60.000 5.77 0.00 42.39 2.87
668 679 2.335092 CTAGGGTCGCGTAGGGGAGA 62.335 65.000 5.77 0.00 42.39 3.71
669 680 1.897615 CTAGGGTCGCGTAGGGGAG 60.898 68.421 5.77 0.00 42.39 4.30
681 701 2.341101 CGAGTGCCGTGACTAGGGT 61.341 63.158 0.00 0.00 34.32 4.34
746 766 4.465446 TGGGAGGAGGGCGGAGAG 62.465 72.222 0.00 0.00 0.00 3.20
747 767 4.779733 GTGGGAGGAGGGCGGAGA 62.780 72.222 0.00 0.00 0.00 3.71
748 768 4.787280 AGTGGGAGGAGGGCGGAG 62.787 72.222 0.00 0.00 0.00 4.63
749 769 4.779733 GAGTGGGAGGAGGGCGGA 62.780 72.222 0.00 0.00 0.00 5.54
754 774 3.465403 CTGCGGAGTGGGAGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
755 775 4.154347 GCTGCGGAGTGGGAGGAG 62.154 72.222 5.62 0.00 0.00 3.69
1089 1115 2.288025 GGGGTTGTACTCCTCCGCA 61.288 63.158 0.00 0.00 35.29 5.69
1161 1187 4.101448 GCAGTCGCCTGGGTGGAT 62.101 66.667 0.00 0.00 39.22 3.41
1312 1338 2.432444 CTCCTCGAAGTCAGTCTCAGT 58.568 52.381 0.00 0.00 0.00 3.41
1315 1341 0.454196 GGCTCCTCGAAGTCAGTCTC 59.546 60.000 0.00 0.00 0.00 3.36
1316 1342 1.309499 CGGCTCCTCGAAGTCAGTCT 61.309 60.000 0.00 0.00 0.00 3.24
1317 1343 1.137825 CGGCTCCTCGAAGTCAGTC 59.862 63.158 0.00 0.00 0.00 3.51
1624 1691 9.349713 TCTTTCAATGGTATTAACTGAACAAGT 57.650 29.630 0.00 0.00 42.60 3.16
1729 1875 1.675310 CGTGGCAAGGCTTCATCCA 60.675 57.895 0.00 2.31 0.00 3.41
1749 1896 0.034896 TCAACCCTTCGCCTGTCTTC 59.965 55.000 0.00 0.00 0.00 2.87
1879 2026 1.227383 CCCTCCATTGCCCACCTAC 59.773 63.158 0.00 0.00 0.00 3.18
1939 2086 6.176183 CAGTGTTTTACAGATCTCCCAAGAT 58.824 40.000 0.00 0.00 45.16 2.40
1949 2096 4.469657 TCAAAGGGCAGTGTTTTACAGAT 58.530 39.130 0.00 0.00 0.00 2.90
2051 2198 3.548770 TGAAGGAAGCTGCAATCCTATG 58.451 45.455 22.26 0.00 45.33 2.23
2693 2864 7.182568 AGGGAGTAGATAGTACCATAGTAGTCC 59.817 44.444 0.00 7.80 33.97 3.85
2722 2898 9.720667 AAACCACGACACTTATTTTAACTTAAC 57.279 29.630 0.00 0.00 0.00 2.01
2725 2901 9.940166 CTAAAACCACGACACTTATTTTAACTT 57.060 29.630 0.00 0.00 0.00 2.66
2726 2902 9.112725 ACTAAAACCACGACACTTATTTTAACT 57.887 29.630 0.00 0.00 0.00 2.24
2784 2960 7.224949 GCTACCATAATACTTCCTCTGTTTCAC 59.775 40.741 0.00 0.00 0.00 3.18
2785 2961 7.272978 GCTACCATAATACTTCCTCTGTTTCA 58.727 38.462 0.00 0.00 0.00 2.69
2879 5618 9.838339 ATATCCTACCTCAGTAACTGAAAATTG 57.162 33.333 0.00 0.00 40.18 2.32
3154 5909 4.783621 GCTGTGCAGATGCCCCGA 62.784 66.667 3.02 0.00 41.18 5.14
3258 6356 6.828785 ACTCTCTGTTTGTGTAAGGAAACATT 59.171 34.615 0.00 0.00 40.38 2.71
3291 6389 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3293 6391 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3294 6392 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3295 6393 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3296 6394 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3320 6418 9.527157 TGTGGTAATCCATTTGAAATCTCTAAA 57.473 29.630 0.00 0.00 46.20 1.85
3321 6419 9.699410 ATGTGGTAATCCATTTGAAATCTCTAA 57.301 29.630 0.00 0.00 46.20 2.10
3323 6421 9.125026 GTATGTGGTAATCCATTTGAAATCTCT 57.875 33.333 0.00 0.00 46.20 3.10
3324 6422 8.070171 CGTATGTGGTAATCCATTTGAAATCTC 58.930 37.037 0.00 0.00 46.20 2.75
3325 6423 7.013274 CCGTATGTGGTAATCCATTTGAAATCT 59.987 37.037 0.00 0.00 46.20 2.40
3326 6424 7.012894 TCCGTATGTGGTAATCCATTTGAAATC 59.987 37.037 0.00 0.00 46.20 2.17
3327 6425 6.831353 TCCGTATGTGGTAATCCATTTGAAAT 59.169 34.615 0.00 0.00 46.20 2.17
3328 6426 6.181190 TCCGTATGTGGTAATCCATTTGAAA 58.819 36.000 0.00 0.00 46.20 2.69
3329 6427 5.746284 TCCGTATGTGGTAATCCATTTGAA 58.254 37.500 0.00 0.00 46.20 2.69
3330 6428 5.360649 TCCGTATGTGGTAATCCATTTGA 57.639 39.130 0.00 0.00 46.20 2.69
3331 6429 5.530915 ACATCCGTATGTGGTAATCCATTTG 59.469 40.000 0.00 0.00 44.79 2.32
3332 6430 5.690865 ACATCCGTATGTGGTAATCCATTT 58.309 37.500 0.00 0.00 44.79 2.32
3333 6431 5.304686 ACATCCGTATGTGGTAATCCATT 57.695 39.130 0.00 0.00 44.79 3.16
3334 6432 4.974645 ACATCCGTATGTGGTAATCCAT 57.025 40.909 0.00 0.00 44.79 3.41
3335 6433 7.727578 ATATACATCCGTATGTGGTAATCCA 57.272 36.000 3.56 0.00 45.99 3.41
3336 6434 9.128404 TCTATATACATCCGTATGTGGTAATCC 57.872 37.037 3.56 0.00 45.99 3.01
3337 6435 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
3338 6436 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
3339 6437 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
3341 6439 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3374 6472 7.141363 ACAGAGCAAAATGAGTGAATTTACAC 58.859 34.615 2.93 0.00 40.60 2.90
3375 6473 7.275888 ACAGAGCAAAATGAGTGAATTTACA 57.724 32.000 2.93 0.00 0.00 2.41
3376 6474 9.282247 CATACAGAGCAAAATGAGTGAATTTAC 57.718 33.333 0.00 0.00 0.00 2.01
3377 6475 9.013229 ACATACAGAGCAAAATGAGTGAATTTA 57.987 29.630 0.00 0.00 0.00 1.40
3378 6476 7.889469 ACATACAGAGCAAAATGAGTGAATTT 58.111 30.769 0.00 0.00 0.00 1.82
3379 6477 7.458409 ACATACAGAGCAAAATGAGTGAATT 57.542 32.000 0.00 0.00 0.00 2.17
3380 6478 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
3381 6479 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
3382 6480 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
3383 6481 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
3384 6482 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
3385 6483 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
3386 6484 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
3387 6485 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
3388 6486 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
3389 6487 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
3390 6488 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
3391 6489 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
3392 6490 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
3393 6491 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
3394 6492 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
3395 6493 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
3396 6494 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
3397 6495 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
3398 6496 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3400 6498 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3401 6499 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3402 6500 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3403 6501 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3404 6502 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3405 6503 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3406 6504 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3407 6505 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3424 6522 8.368668 CCTCCGTTCCTAAATATATGTCTTTCT 58.631 37.037 0.00 0.00 0.00 2.52
3425 6523 7.603024 CCCTCCGTTCCTAAATATATGTCTTTC 59.397 40.741 0.00 0.00 0.00 2.62
3426 6524 7.291651 TCCCTCCGTTCCTAAATATATGTCTTT 59.708 37.037 0.00 0.00 0.00 2.52
3427 6525 6.785963 TCCCTCCGTTCCTAAATATATGTCTT 59.214 38.462 0.00 0.00 0.00 3.01
3428 6526 6.320518 TCCCTCCGTTCCTAAATATATGTCT 58.679 40.000 0.00 0.00 0.00 3.41
3429 6527 6.210984 ACTCCCTCCGTTCCTAAATATATGTC 59.789 42.308 0.00 0.00 0.00 3.06
3430 6528 6.082707 ACTCCCTCCGTTCCTAAATATATGT 58.917 40.000 0.00 0.00 0.00 2.29
3431 6529 6.607004 ACTCCCTCCGTTCCTAAATATATG 57.393 41.667 0.00 0.00 0.00 1.78
3432 6530 7.178097 GTGTACTCCCTCCGTTCCTAAATATAT 59.822 40.741 0.00 0.00 0.00 0.86
3433 6531 6.491403 GTGTACTCCCTCCGTTCCTAAATATA 59.509 42.308 0.00 0.00 0.00 0.86
3434 6532 5.303845 GTGTACTCCCTCCGTTCCTAAATAT 59.696 44.000 0.00 0.00 0.00 1.28
3435 6533 4.646492 GTGTACTCCCTCCGTTCCTAAATA 59.354 45.833 0.00 0.00 0.00 1.40
3436 6534 3.450096 GTGTACTCCCTCCGTTCCTAAAT 59.550 47.826 0.00 0.00 0.00 1.40
3437 6535 2.827921 GTGTACTCCCTCCGTTCCTAAA 59.172 50.000 0.00 0.00 0.00 1.85
3438 6536 2.450476 GTGTACTCCCTCCGTTCCTAA 58.550 52.381 0.00 0.00 0.00 2.69
3439 6537 1.679944 CGTGTACTCCCTCCGTTCCTA 60.680 57.143 0.00 0.00 0.00 2.94
3440 6538 0.964358 CGTGTACTCCCTCCGTTCCT 60.964 60.000 0.00 0.00 0.00 3.36
3441 6539 1.509923 CGTGTACTCCCTCCGTTCC 59.490 63.158 0.00 0.00 0.00 3.62
3442 6540 1.509923 CCGTGTACTCCCTCCGTTC 59.490 63.158 0.00 0.00 0.00 3.95
3443 6541 2.643232 GCCGTGTACTCCCTCCGTT 61.643 63.158 0.00 0.00 0.00 4.44
3444 6542 3.066814 GCCGTGTACTCCCTCCGT 61.067 66.667 0.00 0.00 0.00 4.69
3445 6543 2.754658 AGCCGTGTACTCCCTCCG 60.755 66.667 0.00 0.00 0.00 4.63
3446 6544 0.682209 TACAGCCGTGTACTCCCTCC 60.682 60.000 0.00 0.00 38.19 4.30
3447 6545 0.739561 CTACAGCCGTGTACTCCCTC 59.260 60.000 0.00 0.00 38.19 4.30
3448 6546 0.330604 TCTACAGCCGTGTACTCCCT 59.669 55.000 0.00 0.00 38.19 4.20
3449 6547 0.739561 CTCTACAGCCGTGTACTCCC 59.260 60.000 0.00 0.00 38.19 4.30
3450 6548 0.100861 GCTCTACAGCCGTGTACTCC 59.899 60.000 0.00 0.00 40.14 3.85
3451 6549 0.809385 TGCTCTACAGCCGTGTACTC 59.191 55.000 0.00 0.00 46.26 2.59
3452 6550 1.067776 GTTGCTCTACAGCCGTGTACT 60.068 52.381 0.00 0.00 46.26 2.73
3453 6551 1.067776 AGTTGCTCTACAGCCGTGTAC 60.068 52.381 0.00 0.00 46.26 2.90
3454 6552 1.201647 GAGTTGCTCTACAGCCGTGTA 59.798 52.381 0.00 0.00 46.26 2.90
3455 6553 0.038159 GAGTTGCTCTACAGCCGTGT 60.038 55.000 0.00 0.00 46.26 4.49
3456 6554 0.038251 TGAGTTGCTCTACAGCCGTG 60.038 55.000 0.00 0.00 46.26 4.94
3522 6645 3.056393 ACCGATCACCATCTGTACGAAAA 60.056 43.478 0.00 0.00 0.00 2.29
3633 6863 9.748708 TTATCCAATATGCTTTGAAGTTATTGC 57.251 29.630 15.51 0.00 35.39 3.56
3661 6895 7.424803 TGTGAACAACTTATGAGAACAAATGG 58.575 34.615 0.00 0.00 0.00 3.16
3876 7128 5.012458 AGTGATCCTCTTCAACTGAACATGA 59.988 40.000 0.00 0.00 0.00 3.07
3943 7195 3.057596 ACAACAATATCAAACTGGGTGCG 60.058 43.478 0.00 0.00 0.00 5.34
3996 7248 4.782019 AGAGAGAGACACTACAGCTTTG 57.218 45.455 0.00 0.00 0.00 2.77
4010 7262 7.944061 AGACAATCAGACAATCATAGAGAGAG 58.056 38.462 0.00 0.00 0.00 3.20
4082 7334 7.308782 AGAGCCAAGACAAAATAAGATTACG 57.691 36.000 0.00 0.00 0.00 3.18
4159 7413 7.041721 CCTTGTTTACACTAGATGCTGATACA 58.958 38.462 0.00 0.00 0.00 2.29
4207 7461 2.370189 GCTTATGCACATCTAGGGGAGT 59.630 50.000 0.00 0.00 39.41 3.85
4247 7501 1.279271 CAACTACTGCCAAGGCTACCT 59.721 52.381 12.96 0.00 42.51 3.08
4248 7502 1.679032 CCAACTACTGCCAAGGCTACC 60.679 57.143 12.96 0.00 42.51 3.18
4263 7517 0.777446 ACCAACCATAGCCACCAACT 59.223 50.000 0.00 0.00 0.00 3.16
4273 7527 2.092646 GCCATCTACACCACCAACCATA 60.093 50.000 0.00 0.00 0.00 2.74
4320 7574 0.469917 CCATGGTATGTCGCTTCCCT 59.530 55.000 2.57 0.00 0.00 4.20
4327 7581 0.034059 GCTCCCTCCATGGTATGTCG 59.966 60.000 12.58 0.00 0.00 4.35
4337 7591 0.545309 AGTAACAGCAGCTCCCTCCA 60.545 55.000 0.00 0.00 0.00 3.86
4422 7676 5.001232 GGAAGGCTGCATCCGTATAAATTA 58.999 41.667 0.50 0.00 0.00 1.40
4552 7809 5.929992 TCGCAGCTTTAGTACAACTTTGTAT 59.070 36.000 5.16 0.00 44.59 2.29
4703 7994 4.831107 TGCAAATGAAATAGGGGCTTTTC 58.169 39.130 0.00 0.00 33.44 2.29
4903 8197 1.453155 CAACAGAAGTTCCATCCCGG 58.547 55.000 0.00 0.00 35.28 5.73
4955 8252 4.759516 TTTCCGACTTAATCCTTTGCAC 57.240 40.909 0.00 0.00 0.00 4.57
4981 8278 4.202151 GGCAGATAACAAAACCCATGATCC 60.202 45.833 0.00 0.00 0.00 3.36
5023 8320 7.120923 TCTATAGTGAAGGTACCCATTTGAC 57.879 40.000 8.74 0.71 0.00 3.18
5257 8561 9.982651 CATTAGCTTAACTAGGTAGATAGCAAA 57.017 33.333 11.59 0.00 38.05 3.68
5258 8562 9.363401 TCATTAGCTTAACTAGGTAGATAGCAA 57.637 33.333 11.59 5.45 38.05 3.91
5259 8563 8.935614 TCATTAGCTTAACTAGGTAGATAGCA 57.064 34.615 11.59 0.00 38.05 3.49
5260 8564 9.796120 CATCATTAGCTTAACTAGGTAGATAGC 57.204 37.037 2.26 2.26 38.05 2.97
5373 8681 4.682787 TCTTATACTGACTCGCCACATTG 58.317 43.478 0.00 0.00 0.00 2.82
5374 8682 5.339008 TTCTTATACTGACTCGCCACATT 57.661 39.130 0.00 0.00 0.00 2.71
5375 8683 4.737946 GCTTCTTATACTGACTCGCCACAT 60.738 45.833 0.00 0.00 0.00 3.21
5376 8684 3.428999 GCTTCTTATACTGACTCGCCACA 60.429 47.826 0.00 0.00 0.00 4.17
5377 8685 3.117046 GCTTCTTATACTGACTCGCCAC 58.883 50.000 0.00 0.00 0.00 5.01
5492 8814 2.102252 GTGTGCAAAATTTCCCTGACCA 59.898 45.455 0.00 0.00 0.00 4.02
5520 8854 8.635765 AGTCATCCTTTATTTGTAAAGAAGCA 57.364 30.769 8.98 0.00 38.88 3.91
5538 8872 7.309621 GGGGTTTTAACTCCTTTTAAGTCATCC 60.310 40.741 4.23 0.00 46.40 3.51
5541 8875 6.964807 GGGGTTTTAACTCCTTTTAAGTCA 57.035 37.500 4.23 0.00 46.40 3.41
5570 8904 4.565652 GCTTCTACAGGAAATCAAGGACCA 60.566 45.833 0.00 0.00 33.07 4.02
5572 8906 3.942115 GGCTTCTACAGGAAATCAAGGAC 59.058 47.826 0.00 0.00 33.07 3.85
5597 8931 3.248602 CCGCAATGCAGGTCTAAGATTAC 59.751 47.826 5.91 0.00 0.00 1.89
5604 8938 2.511373 CGCCGCAATGCAGGTCTA 60.511 61.111 5.91 0.00 0.00 2.59
5659 8993 2.508867 CGTGATAGTGTGTGCATTTGC 58.491 47.619 0.00 0.00 42.50 3.68
5673 9007 3.616560 GCTGAAACACTTCCTCCGTGATA 60.617 47.826 0.00 0.00 36.29 2.15
5751 9108 3.958147 TGATCAGGCGACTACTGGAATTA 59.042 43.478 0.00 0.00 40.21 1.40
5765 9122 2.621055 ACTCATCGACTACTGATCAGGC 59.379 50.000 26.08 11.51 0.00 4.85
5766 9123 5.618863 GCATACTCATCGACTACTGATCAGG 60.619 48.000 26.08 12.13 0.00 3.86
5773 9130 1.267261 GCGGCATACTCATCGACTACT 59.733 52.381 0.00 0.00 0.00 2.57
5807 9164 5.309638 TCACGTCCTGGTTTTATCAATCAA 58.690 37.500 0.00 0.00 0.00 2.57
5808 9165 4.900684 TCACGTCCTGGTTTTATCAATCA 58.099 39.130 0.00 0.00 0.00 2.57
5809 9166 5.354234 ACATCACGTCCTGGTTTTATCAATC 59.646 40.000 0.00 0.00 0.00 2.67
5810 9167 5.253330 ACATCACGTCCTGGTTTTATCAAT 58.747 37.500 0.00 0.00 0.00 2.57
5891 9248 4.155462 CACTGCAGCAAACTCAATCTATGT 59.845 41.667 15.27 0.00 0.00 2.29
5962 9319 4.764679 TTTACTCTGTACGACGGCTTAA 57.235 40.909 0.00 0.00 0.00 1.85
5986 9344 2.787601 TGTGCGTTCGAGAAGTTAGT 57.212 45.000 0.00 0.00 0.00 2.24
5997 9355 2.094417 GGATCTTAGTGCTTGTGCGTTC 59.906 50.000 0.00 0.00 43.34 3.95
6042 9400 6.151648 TGAAGCTTATGAAATTCTGGGAGTTG 59.848 38.462 0.00 0.00 0.00 3.16
6047 9405 5.220739 CGACTGAAGCTTATGAAATTCTGGG 60.221 44.000 0.00 0.00 0.00 4.45
6119 9482 3.699894 CACCCGCTCCAGCTCTGT 61.700 66.667 0.00 0.00 39.32 3.41
6120 9483 2.641439 GATCACCCGCTCCAGCTCTG 62.641 65.000 0.00 0.00 39.32 3.35
6121 9484 2.364842 ATCACCCGCTCCAGCTCT 60.365 61.111 0.00 0.00 39.32 4.09
6122 9485 1.965754 AAGATCACCCGCTCCAGCTC 61.966 60.000 0.00 0.00 39.32 4.09
6123 9486 1.992277 AAGATCACCCGCTCCAGCT 60.992 57.895 0.00 0.00 39.32 4.24
6124 9487 1.817099 CAAGATCACCCGCTCCAGC 60.817 63.158 0.00 0.00 37.78 4.85
6125 9488 1.153289 CCAAGATCACCCGCTCCAG 60.153 63.158 0.00 0.00 0.00 3.86
6217 9583 7.388437 ACACAATTGATGGAATTTATGCAAGT 58.612 30.769 13.59 0.00 31.41 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.