Multiple sequence alignment - TraesCS1B01G234800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G234800 chr1B 100.000 3223 0 0 1 3223 420683762 420686984 0.000000e+00 5952.0
1 TraesCS1B01G234800 chr1B 87.081 209 23 3 1905 2111 583760672 583760878 1.930000e-57 233.0
2 TraesCS1B01G234800 chr1D 93.939 2673 106 30 562 3223 310816686 310814059 0.000000e+00 3988.0
3 TraesCS1B01G234800 chr1D 87.560 209 22 3 1905 2111 432319765 432319971 4.160000e-59 239.0
4 TraesCS1B01G234800 chr1A 92.940 2677 105 30 562 3218 390708253 390710865 0.000000e+00 3819.0
5 TraesCS1B01G234800 chr4D 77.607 652 93 38 1495 2129 509057617 509057002 2.380000e-91 346.0
6 TraesCS1B01G234800 chr4B 77.316 626 94 33 1507 2114 658211996 658212591 3.100000e-85 326.0
7 TraesCS1B01G234800 chr5A 77.204 658 85 44 1495 2129 696925784 696925169 1.120000e-84 324.0
8 TraesCS1B01G234800 chr5A 80.488 205 21 11 139 328 321005108 321004908 4.340000e-29 139.0
9 TraesCS1B01G234800 chr2D 80.569 211 33 8 1906 2112 491194239 491194445 4.310000e-34 156.0
10 TraesCS1B01G234800 chr2A 80.569 211 33 8 1906 2112 635512088 635512294 4.310000e-34 156.0
11 TraesCS1B01G234800 chr3D 97.059 34 1 0 778 811 582116510 582116477 1.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G234800 chr1B 420683762 420686984 3222 False 5952 5952 100.000 1 3223 1 chr1B.!!$F1 3222
1 TraesCS1B01G234800 chr1D 310814059 310816686 2627 True 3988 3988 93.939 562 3223 1 chr1D.!!$R1 2661
2 TraesCS1B01G234800 chr1A 390708253 390710865 2612 False 3819 3819 92.940 562 3218 1 chr1A.!!$F1 2656
3 TraesCS1B01G234800 chr4D 509057002 509057617 615 True 346 346 77.607 1495 2129 1 chr4D.!!$R1 634
4 TraesCS1B01G234800 chr4B 658211996 658212591 595 False 326 326 77.316 1507 2114 1 chr4B.!!$F1 607
5 TraesCS1B01G234800 chr5A 696925169 696925784 615 True 324 324 77.204 1495 2129 1 chr5A.!!$R2 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 853 0.026803 CAGCGCGCACTATTTCTTCC 59.973 55.0 35.1 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2679 2721 0.321346 TCGAGCTTCTTGCATGACCA 59.679 50.0 1.02 0.0 45.94 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.506438 GCTACACGAGGCACCGAC 60.506 66.667 6.32 0.00 0.00 4.79
18 19 2.181021 CTACACGAGGCACCGACC 59.819 66.667 6.32 0.00 0.00 4.79
19 20 2.598099 TACACGAGGCACCGACCA 60.598 61.111 6.32 0.00 0.00 4.02
20 21 1.945354 CTACACGAGGCACCGACCAT 61.945 60.000 6.32 0.00 0.00 3.55
21 22 2.220615 TACACGAGGCACCGACCATG 62.221 60.000 6.32 0.00 0.00 3.66
22 23 4.082523 ACGAGGCACCGACCATGG 62.083 66.667 11.19 11.19 0.00 3.66
23 24 3.770040 CGAGGCACCGACCATGGA 61.770 66.667 21.47 0.00 0.00 3.41
24 25 2.187946 GAGGCACCGACCATGGAG 59.812 66.667 21.47 11.91 0.00 3.86
25 26 3.391665 GAGGCACCGACCATGGAGG 62.392 68.421 21.47 22.53 45.67 4.30
26 27 4.489771 GGCACCGACCATGGAGGG 62.490 72.222 26.50 23.35 43.89 4.30
27 28 4.489771 GCACCGACCATGGAGGGG 62.490 72.222 26.50 24.87 43.89 4.79
28 29 3.797353 CACCGACCATGGAGGGGG 61.797 72.222 26.50 20.30 43.89 5.40
31 32 4.489771 CGACCATGGAGGGGGCAC 62.490 72.222 21.47 0.00 43.89 5.01
46 47 3.704100 GCACCATTGTGGCCTTTTT 57.296 47.368 3.32 0.00 42.67 1.94
47 48 1.228533 GCACCATTGTGGCCTTTTTG 58.771 50.000 3.32 0.00 42.67 2.44
48 49 1.474855 GCACCATTGTGGCCTTTTTGT 60.475 47.619 3.32 0.00 42.67 2.83
49 50 2.916640 CACCATTGTGGCCTTTTTGTT 58.083 42.857 3.32 0.00 42.67 2.83
50 51 2.871633 CACCATTGTGGCCTTTTTGTTC 59.128 45.455 3.32 0.00 42.67 3.18
51 52 2.771372 ACCATTGTGGCCTTTTTGTTCT 59.229 40.909 3.32 0.00 42.67 3.01
52 53 3.199727 ACCATTGTGGCCTTTTTGTTCTT 59.800 39.130 3.32 0.00 42.67 2.52
53 54 3.809279 CCATTGTGGCCTTTTTGTTCTTC 59.191 43.478 3.32 0.00 0.00 2.87
54 55 4.443315 CCATTGTGGCCTTTTTGTTCTTCT 60.443 41.667 3.32 0.00 0.00 2.85
55 56 5.221422 CCATTGTGGCCTTTTTGTTCTTCTA 60.221 40.000 3.32 0.00 0.00 2.10
56 57 5.923733 TTGTGGCCTTTTTGTTCTTCTAA 57.076 34.783 3.32 0.00 0.00 2.10
57 58 5.514274 TGTGGCCTTTTTGTTCTTCTAAG 57.486 39.130 3.32 0.00 0.00 2.18
58 59 4.202111 TGTGGCCTTTTTGTTCTTCTAAGC 60.202 41.667 3.32 0.00 0.00 3.09
59 60 3.004315 TGGCCTTTTTGTTCTTCTAAGCG 59.996 43.478 3.32 0.00 0.00 4.68
60 61 3.565516 GCCTTTTTGTTCTTCTAAGCGG 58.434 45.455 0.00 0.00 0.00 5.52
61 62 3.004419 GCCTTTTTGTTCTTCTAAGCGGT 59.996 43.478 0.00 0.00 0.00 5.68
62 63 4.784329 CCTTTTTGTTCTTCTAAGCGGTC 58.216 43.478 0.00 0.00 0.00 4.79
63 64 4.515567 CCTTTTTGTTCTTCTAAGCGGTCT 59.484 41.667 0.00 0.00 0.00 3.85
64 65 5.334182 CCTTTTTGTTCTTCTAAGCGGTCTC 60.334 44.000 0.00 0.00 0.00 3.36
65 66 3.314541 TTGTTCTTCTAAGCGGTCTCC 57.685 47.619 0.00 0.00 0.00 3.71
66 67 2.526432 TGTTCTTCTAAGCGGTCTCCT 58.474 47.619 0.00 0.00 0.00 3.69
67 68 2.492484 TGTTCTTCTAAGCGGTCTCCTC 59.508 50.000 0.00 0.00 0.00 3.71
68 69 1.380524 TCTTCTAAGCGGTCTCCTCG 58.619 55.000 0.00 0.00 0.00 4.63
69 70 0.382515 CTTCTAAGCGGTCTCCTCGG 59.617 60.000 0.00 0.00 0.00 4.63
70 71 1.664321 TTCTAAGCGGTCTCCTCGGC 61.664 60.000 0.00 0.00 0.00 5.54
71 72 3.471244 CTAAGCGGTCTCCTCGGCG 62.471 68.421 0.00 0.00 38.40 6.46
72 73 3.982316 TAAGCGGTCTCCTCGGCGA 62.982 63.158 10.14 10.14 38.40 5.54
99 100 4.273257 CCGCCGCCGTTGGTTTTT 62.273 61.111 0.00 0.00 0.00 1.94
100 101 2.728015 CGCCGCCGTTGGTTTTTC 60.728 61.111 0.00 0.00 0.00 2.29
101 102 2.725641 GCCGCCGTTGGTTTTTCT 59.274 55.556 0.00 0.00 0.00 2.52
102 103 1.843734 CGCCGCCGTTGGTTTTTCTA 61.844 55.000 0.00 0.00 0.00 2.10
103 104 0.109919 GCCGCCGTTGGTTTTTCTAG 60.110 55.000 0.00 0.00 0.00 2.43
104 105 0.109919 CCGCCGTTGGTTTTTCTAGC 60.110 55.000 0.00 0.00 0.00 3.42
105 106 0.872388 CGCCGTTGGTTTTTCTAGCT 59.128 50.000 0.00 0.00 0.00 3.32
106 107 1.136057 CGCCGTTGGTTTTTCTAGCTC 60.136 52.381 0.00 0.00 0.00 4.09
107 108 2.152016 GCCGTTGGTTTTTCTAGCTCT 58.848 47.619 0.00 0.00 0.00 4.09
108 109 2.552743 GCCGTTGGTTTTTCTAGCTCTT 59.447 45.455 0.00 0.00 0.00 2.85
109 110 3.004419 GCCGTTGGTTTTTCTAGCTCTTT 59.996 43.478 0.00 0.00 0.00 2.52
110 111 4.499188 GCCGTTGGTTTTTCTAGCTCTTTT 60.499 41.667 0.00 0.00 0.00 2.27
111 112 4.976116 CCGTTGGTTTTTCTAGCTCTTTTG 59.024 41.667 0.00 0.00 0.00 2.44
112 113 4.976116 CGTTGGTTTTTCTAGCTCTTTTGG 59.024 41.667 0.00 0.00 0.00 3.28
113 114 4.584327 TGGTTTTTCTAGCTCTTTTGGC 57.416 40.909 0.00 0.00 0.00 4.52
114 115 3.320826 TGGTTTTTCTAGCTCTTTTGGCC 59.679 43.478 0.00 0.00 0.00 5.36
115 116 3.306088 GGTTTTTCTAGCTCTTTTGGCCC 60.306 47.826 0.00 0.00 0.00 5.80
116 117 2.215942 TTTCTAGCTCTTTTGGCCCC 57.784 50.000 0.00 0.00 0.00 5.80
117 118 0.035439 TTCTAGCTCTTTTGGCCCCG 60.035 55.000 0.00 0.00 0.00 5.73
118 119 1.452108 CTAGCTCTTTTGGCCCCGG 60.452 63.158 0.00 0.00 0.00 5.73
119 120 2.198304 CTAGCTCTTTTGGCCCCGGT 62.198 60.000 0.00 0.00 0.00 5.28
120 121 2.478335 TAGCTCTTTTGGCCCCGGTG 62.478 60.000 0.00 0.00 0.00 4.94
121 122 2.676471 CTCTTTTGGCCCCGGTGG 60.676 66.667 0.00 2.05 37.09 4.61
168 169 3.439540 GCCTTTGCCGCGATTGGA 61.440 61.111 8.23 0.00 0.00 3.53
169 170 2.793946 CCTTTGCCGCGATTGGAG 59.206 61.111 8.23 0.00 0.00 3.86
170 171 2.100991 CTTTGCCGCGATTGGAGC 59.899 61.111 8.23 0.58 0.00 4.70
171 172 3.401243 CTTTGCCGCGATTGGAGCC 62.401 63.158 8.23 0.00 0.00 4.70
186 187 2.815647 GCCGGAGCTTGAACTCGG 60.816 66.667 5.05 0.00 37.57 4.63
187 188 2.657237 CCGGAGCTTGAACTCGGT 59.343 61.111 0.00 0.00 37.57 4.69
188 189 1.738099 CCGGAGCTTGAACTCGGTG 60.738 63.158 0.00 0.00 37.57 4.94
189 190 1.738099 CGGAGCTTGAACTCGGTGG 60.738 63.158 0.00 0.00 37.57 4.61
190 191 1.671742 GGAGCTTGAACTCGGTGGA 59.328 57.895 0.00 0.00 37.57 4.02
191 192 0.670854 GGAGCTTGAACTCGGTGGAC 60.671 60.000 0.00 0.00 37.57 4.02
192 193 0.318762 GAGCTTGAACTCGGTGGACT 59.681 55.000 0.00 0.00 0.00 3.85
193 194 0.759346 AGCTTGAACTCGGTGGACTT 59.241 50.000 0.00 0.00 0.00 3.01
194 195 1.141053 AGCTTGAACTCGGTGGACTTT 59.859 47.619 0.00 0.00 0.00 2.66
195 196 1.947456 GCTTGAACTCGGTGGACTTTT 59.053 47.619 0.00 0.00 0.00 2.27
196 197 2.357952 GCTTGAACTCGGTGGACTTTTT 59.642 45.455 0.00 0.00 0.00 1.94
197 198 3.562557 GCTTGAACTCGGTGGACTTTTTA 59.437 43.478 0.00 0.00 0.00 1.52
198 199 4.215613 GCTTGAACTCGGTGGACTTTTTAT 59.784 41.667 0.00 0.00 0.00 1.40
199 200 5.617087 GCTTGAACTCGGTGGACTTTTTATC 60.617 44.000 0.00 0.00 0.00 1.75
200 201 4.320870 TGAACTCGGTGGACTTTTTATCC 58.679 43.478 0.00 0.00 36.70 2.59
201 202 3.345508 ACTCGGTGGACTTTTTATCCC 57.654 47.619 0.00 0.00 35.12 3.85
202 203 2.026542 ACTCGGTGGACTTTTTATCCCC 60.027 50.000 0.00 0.00 35.12 4.81
203 204 1.986631 TCGGTGGACTTTTTATCCCCA 59.013 47.619 0.00 0.00 35.12 4.96
204 205 2.375845 TCGGTGGACTTTTTATCCCCAA 59.624 45.455 0.00 0.00 35.12 4.12
205 206 2.752903 CGGTGGACTTTTTATCCCCAAG 59.247 50.000 0.00 0.00 35.12 3.61
206 207 2.496070 GGTGGACTTTTTATCCCCAAGC 59.504 50.000 0.00 0.00 35.12 4.01
207 208 3.431415 GTGGACTTTTTATCCCCAAGCT 58.569 45.455 0.00 0.00 35.12 3.74
208 209 3.832490 GTGGACTTTTTATCCCCAAGCTT 59.168 43.478 0.00 0.00 35.12 3.74
209 210 4.283467 GTGGACTTTTTATCCCCAAGCTTT 59.717 41.667 0.00 0.00 35.12 3.51
210 211 4.904853 TGGACTTTTTATCCCCAAGCTTTT 59.095 37.500 0.00 0.00 35.12 2.27
211 212 5.011635 TGGACTTTTTATCCCCAAGCTTTTC 59.988 40.000 0.00 0.00 35.12 2.29
212 213 5.246203 GGACTTTTTATCCCCAAGCTTTTCT 59.754 40.000 0.00 0.00 0.00 2.52
213 214 6.239600 GGACTTTTTATCCCCAAGCTTTTCTT 60.240 38.462 0.00 0.00 34.78 2.52
214 215 7.136822 ACTTTTTATCCCCAAGCTTTTCTTT 57.863 32.000 0.00 0.00 31.27 2.52
215 216 6.992123 ACTTTTTATCCCCAAGCTTTTCTTTG 59.008 34.615 0.00 0.00 31.27 2.77
216 217 5.482163 TTTATCCCCAAGCTTTTCTTTGG 57.518 39.130 0.00 0.00 37.35 3.28
217 218 1.047801 TCCCCAAGCTTTTCTTTGGC 58.952 50.000 0.00 0.00 36.53 4.52
218 219 0.319813 CCCCAAGCTTTTCTTTGGCG 60.320 55.000 0.00 0.00 36.53 5.69
219 220 0.945743 CCCAAGCTTTTCTTTGGCGC 60.946 55.000 0.00 0.00 31.75 6.53
220 221 1.277495 CCAAGCTTTTCTTTGGCGCG 61.277 55.000 0.00 0.00 31.27 6.86
221 222 1.007387 AAGCTTTTCTTTGGCGCGG 60.007 52.632 8.83 0.00 0.00 6.46
222 223 2.420466 AAGCTTTTCTTTGGCGCGGG 62.420 55.000 8.83 0.00 0.00 6.13
223 224 2.258286 CTTTTCTTTGGCGCGGGG 59.742 61.111 8.83 0.00 0.00 5.73
224 225 2.519780 TTTTCTTTGGCGCGGGGT 60.520 55.556 8.83 0.00 0.00 4.95
225 226 2.082629 CTTTTCTTTGGCGCGGGGTT 62.083 55.000 8.83 0.00 0.00 4.11
226 227 2.077821 TTTTCTTTGGCGCGGGGTTC 62.078 55.000 8.83 0.00 0.00 3.62
235 236 2.435410 GCGGGGTTCGTTTCCGAT 60.435 61.111 5.11 0.00 45.96 4.18
236 237 1.153588 GCGGGGTTCGTTTCCGATA 60.154 57.895 5.11 0.00 45.96 2.92
237 238 1.149964 GCGGGGTTCGTTTCCGATAG 61.150 60.000 5.11 0.00 45.96 2.08
238 239 1.149964 CGGGGTTCGTTTCCGATAGC 61.150 60.000 0.00 0.00 45.96 2.97
239 240 1.149964 GGGGTTCGTTTCCGATAGCG 61.150 60.000 0.00 0.00 43.80 4.26
240 241 0.179129 GGGTTCGTTTCCGATAGCGA 60.179 55.000 0.00 0.00 43.80 4.93
241 242 1.632422 GGTTCGTTTCCGATAGCGAA 58.368 50.000 0.00 4.79 43.80 4.70
242 243 1.994779 GGTTCGTTTCCGATAGCGAAA 59.005 47.619 0.00 0.00 43.80 3.46
243 244 2.412770 GGTTCGTTTCCGATAGCGAAAA 59.587 45.455 0.00 0.00 43.80 2.29
244 245 3.483085 GGTTCGTTTCCGATAGCGAAAAG 60.483 47.826 0.00 3.63 43.80 2.27
245 246 1.657094 TCGTTTCCGATAGCGAAAAGC 59.343 47.619 0.00 0.00 41.88 3.51
246 247 1.267383 CGTTTCCGATAGCGAAAAGCC 60.267 52.381 0.00 0.00 41.43 4.35
247 248 4.705935 CGTTTCCGATAGCGAAAAGCCG 62.706 54.545 0.00 0.00 41.43 5.52
266 267 4.410400 CGGGGTGGCTGAAGGGTC 62.410 72.222 0.00 0.00 0.00 4.46
267 268 4.048470 GGGGTGGCTGAAGGGTCC 62.048 72.222 0.00 0.00 0.00 4.46
268 269 3.256960 GGGTGGCTGAAGGGTCCA 61.257 66.667 0.00 0.00 0.00 4.02
269 270 2.352805 GGTGGCTGAAGGGTCCAG 59.647 66.667 0.00 0.00 34.88 3.86
270 271 2.352805 GTGGCTGAAGGGTCCAGG 59.647 66.667 0.00 0.00 32.51 4.45
273 274 3.727387 GCTGAAGGGTCCAGGCTA 58.273 61.111 0.00 0.00 32.51 3.93
274 275 2.225792 GCTGAAGGGTCCAGGCTAT 58.774 57.895 0.00 0.00 32.51 2.97
275 276 0.107643 GCTGAAGGGTCCAGGCTATC 59.892 60.000 0.00 0.00 32.51 2.08
276 277 1.500474 CTGAAGGGTCCAGGCTATCA 58.500 55.000 0.00 0.00 0.00 2.15
277 278 1.839994 CTGAAGGGTCCAGGCTATCAA 59.160 52.381 0.00 0.00 0.00 2.57
278 279 2.441001 CTGAAGGGTCCAGGCTATCAAT 59.559 50.000 0.00 0.00 0.00 2.57
279 280 2.852449 TGAAGGGTCCAGGCTATCAATT 59.148 45.455 0.00 0.00 0.00 2.32
280 281 3.117888 TGAAGGGTCCAGGCTATCAATTC 60.118 47.826 0.00 0.00 0.00 2.17
281 282 1.777272 AGGGTCCAGGCTATCAATTCC 59.223 52.381 0.00 0.00 0.00 3.01
282 283 1.543429 GGGTCCAGGCTATCAATTCCG 60.543 57.143 0.00 0.00 0.00 4.30
283 284 1.543429 GGTCCAGGCTATCAATTCCGG 60.543 57.143 0.00 0.00 0.00 5.14
284 285 0.108585 TCCAGGCTATCAATTCCGGC 59.891 55.000 0.00 0.00 0.00 6.13
285 286 1.230635 CCAGGCTATCAATTCCGGCG 61.231 60.000 0.00 0.00 0.00 6.46
286 287 1.071471 AGGCTATCAATTCCGGCGG 59.929 57.895 22.51 22.51 0.00 6.13
287 288 1.966451 GGCTATCAATTCCGGCGGG 60.966 63.158 27.98 10.15 0.00 6.13
288 289 1.070786 GCTATCAATTCCGGCGGGA 59.929 57.895 27.98 20.48 41.83 5.14
289 290 0.951040 GCTATCAATTCCGGCGGGAG 60.951 60.000 27.98 13.46 44.98 4.30
290 291 0.320771 CTATCAATTCCGGCGGGAGG 60.321 60.000 27.98 14.52 44.98 4.30
291 292 1.764571 TATCAATTCCGGCGGGAGGG 61.765 60.000 27.98 14.11 44.98 4.30
292 293 4.875713 CAATTCCGGCGGGAGGGG 62.876 72.222 27.98 7.17 44.98 4.79
301 302 4.856801 CGGGAGGGGCGGTCATTG 62.857 72.222 0.00 0.00 0.00 2.82
302 303 4.506255 GGGAGGGGCGGTCATTGG 62.506 72.222 0.00 0.00 0.00 3.16
303 304 3.728373 GGAGGGGCGGTCATTGGT 61.728 66.667 0.00 0.00 0.00 3.67
304 305 2.438434 GAGGGGCGGTCATTGGTG 60.438 66.667 0.00 0.00 0.00 4.17
305 306 3.995506 GAGGGGCGGTCATTGGTGG 62.996 68.421 0.00 0.00 0.00 4.61
311 312 3.443045 GGTCATTGGTGGCGGCTG 61.443 66.667 11.43 0.00 0.00 4.85
312 313 3.443045 GTCATTGGTGGCGGCTGG 61.443 66.667 11.43 0.00 0.00 4.85
329 330 4.189188 GCGGCTGCAGCAGGAATG 62.189 66.667 37.63 20.46 44.36 2.67
330 331 3.515286 CGGCTGCAGCAGGAATGG 61.515 66.667 37.63 14.63 44.36 3.16
331 332 2.044650 GGCTGCAGCAGGAATGGA 60.045 61.111 37.63 0.00 44.36 3.41
332 333 2.119655 GGCTGCAGCAGGAATGGAG 61.120 63.158 37.63 0.00 44.36 3.86
333 334 3.510846 CTGCAGCAGGAATGGAGC 58.489 61.111 15.35 0.00 29.03 4.70
334 335 2.044650 TGCAGCAGGAATGGAGCC 60.045 61.111 0.00 0.00 0.00 4.70
335 336 3.207669 GCAGCAGGAATGGAGCCG 61.208 66.667 0.00 0.00 0.00 5.52
336 337 2.515523 CAGCAGGAATGGAGCCGG 60.516 66.667 0.00 0.00 0.00 6.13
337 338 4.496336 AGCAGGAATGGAGCCGGC 62.496 66.667 21.89 21.89 45.32 6.13
342 343 3.880846 GAATGGAGCCGGCGCAAG 61.881 66.667 31.51 1.61 37.52 4.01
352 353 4.821589 GGCGCAAGGACGGGAGAG 62.822 72.222 10.83 0.00 38.28 3.20
353 354 3.760035 GCGCAAGGACGGGAGAGA 61.760 66.667 0.30 0.00 38.28 3.10
354 355 2.492090 CGCAAGGACGGGAGAGAG 59.508 66.667 0.00 0.00 0.00 3.20
355 356 2.896443 GCAAGGACGGGAGAGAGG 59.104 66.667 0.00 0.00 0.00 3.69
356 357 2.726351 GCAAGGACGGGAGAGAGGG 61.726 68.421 0.00 0.00 0.00 4.30
357 358 2.060980 CAAGGACGGGAGAGAGGGG 61.061 68.421 0.00 0.00 0.00 4.79
358 359 3.318922 AAGGACGGGAGAGAGGGGG 62.319 68.421 0.00 0.00 0.00 5.40
360 361 4.779733 GACGGGAGAGAGGGGGCA 62.780 72.222 0.00 0.00 0.00 5.36
362 363 4.787280 CGGGAGAGAGGGGGCACT 62.787 72.222 0.00 0.00 0.00 4.40
363 364 2.696893 GGGAGAGAGGGGGCACTA 59.303 66.667 0.00 0.00 0.00 2.74
364 365 1.762858 GGGAGAGAGGGGGCACTAC 60.763 68.421 0.00 0.00 0.00 2.73
365 366 1.311747 GGAGAGAGGGGGCACTACT 59.688 63.158 0.00 0.00 0.00 2.57
366 367 0.325765 GGAGAGAGGGGGCACTACTT 60.326 60.000 0.00 0.00 0.00 2.24
367 368 1.574263 GAGAGAGGGGGCACTACTTT 58.426 55.000 0.00 0.00 0.00 2.66
368 369 1.909986 GAGAGAGGGGGCACTACTTTT 59.090 52.381 0.00 0.00 0.00 2.27
369 370 3.105283 GAGAGAGGGGGCACTACTTTTA 58.895 50.000 0.00 0.00 0.00 1.52
370 371 2.838813 AGAGAGGGGGCACTACTTTTAC 59.161 50.000 0.00 0.00 0.00 2.01
371 372 2.838813 GAGAGGGGGCACTACTTTTACT 59.161 50.000 0.00 0.00 0.00 2.24
372 373 3.257578 AGAGGGGGCACTACTTTTACTT 58.742 45.455 0.00 0.00 0.00 2.24
373 374 4.432316 AGAGGGGGCACTACTTTTACTTA 58.568 43.478 0.00 0.00 0.00 2.24
374 375 4.470304 AGAGGGGGCACTACTTTTACTTAG 59.530 45.833 0.00 0.00 0.00 2.18
375 376 3.054582 AGGGGGCACTACTTTTACTTAGC 60.055 47.826 0.00 0.00 0.00 3.09
376 377 3.276857 GGGGCACTACTTTTACTTAGCC 58.723 50.000 0.00 0.00 40.08 3.93
377 378 2.934553 GGGCACTACTTTTACTTAGCCG 59.065 50.000 0.00 0.00 41.66 5.52
378 379 2.350804 GGCACTACTTTTACTTAGCCGC 59.649 50.000 0.00 0.00 0.00 6.53
379 380 2.028883 GCACTACTTTTACTTAGCCGCG 59.971 50.000 0.00 0.00 0.00 6.46
380 381 2.601763 CACTACTTTTACTTAGCCGCGG 59.398 50.000 24.05 24.05 0.00 6.46
381 382 2.199236 CTACTTTTACTTAGCCGCGGG 58.801 52.381 29.38 12.94 0.00 6.13
394 395 3.845259 GCGGGCACGGTGAGGATA 61.845 66.667 11.92 0.00 41.36 2.59
395 396 3.138625 CGGGCACGGTGAGGATAT 58.861 61.111 13.29 0.00 36.18 1.63
396 397 1.445942 CGGGCACGGTGAGGATATT 59.554 57.895 13.29 0.00 36.18 1.28
397 398 0.179056 CGGGCACGGTGAGGATATTT 60.179 55.000 13.29 0.00 36.18 1.40
398 399 1.069513 CGGGCACGGTGAGGATATTTA 59.930 52.381 13.29 0.00 36.18 1.40
399 400 2.490991 GGGCACGGTGAGGATATTTAC 58.509 52.381 13.29 0.00 0.00 2.01
400 401 2.132762 GGCACGGTGAGGATATTTACG 58.867 52.381 13.29 0.00 0.00 3.18
401 402 2.132762 GCACGGTGAGGATATTTACGG 58.867 52.381 13.29 0.00 0.00 4.02
402 403 2.750948 CACGGTGAGGATATTTACGGG 58.249 52.381 0.74 0.00 0.00 5.28
403 404 1.690352 ACGGTGAGGATATTTACGGGG 59.310 52.381 0.00 0.00 0.00 5.73
404 405 1.965643 CGGTGAGGATATTTACGGGGA 59.034 52.381 0.00 0.00 0.00 4.81
405 406 2.565834 CGGTGAGGATATTTACGGGGAT 59.434 50.000 0.00 0.00 0.00 3.85
406 407 3.007614 CGGTGAGGATATTTACGGGGATT 59.992 47.826 0.00 0.00 0.00 3.01
407 408 4.324267 GGTGAGGATATTTACGGGGATTG 58.676 47.826 0.00 0.00 0.00 2.67
408 409 4.324267 GTGAGGATATTTACGGGGATTGG 58.676 47.826 0.00 0.00 0.00 3.16
409 410 4.041198 GTGAGGATATTTACGGGGATTGGA 59.959 45.833 0.00 0.00 0.00 3.53
410 411 4.286032 TGAGGATATTTACGGGGATTGGAG 59.714 45.833 0.00 0.00 0.00 3.86
411 412 3.587506 AGGATATTTACGGGGATTGGAGG 59.412 47.826 0.00 0.00 0.00 4.30
412 413 3.308188 GGATATTTACGGGGATTGGAGGG 60.308 52.174 0.00 0.00 0.00 4.30
413 414 0.850784 ATTTACGGGGATTGGAGGGG 59.149 55.000 0.00 0.00 0.00 4.79
414 415 0.253254 TTTACGGGGATTGGAGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
415 416 0.029474 TTACGGGGATTGGAGGGGAT 60.029 55.000 0.00 0.00 0.00 3.85
416 417 0.029474 TACGGGGATTGGAGGGGATT 60.029 55.000 0.00 0.00 0.00 3.01
417 418 0.924226 ACGGGGATTGGAGGGGATTT 60.924 55.000 0.00 0.00 0.00 2.17
418 419 1.145571 CGGGGATTGGAGGGGATTTA 58.854 55.000 0.00 0.00 0.00 1.40
419 420 1.073923 CGGGGATTGGAGGGGATTTAG 59.926 57.143 0.00 0.00 0.00 1.85
420 421 1.429299 GGGGATTGGAGGGGATTTAGG 59.571 57.143 0.00 0.00 0.00 2.69
421 422 2.428901 GGGATTGGAGGGGATTTAGGA 58.571 52.381 0.00 0.00 0.00 2.94
422 423 2.789399 GGGATTGGAGGGGATTTAGGAA 59.211 50.000 0.00 0.00 0.00 3.36
423 424 3.402708 GGGATTGGAGGGGATTTAGGAAT 59.597 47.826 0.00 0.00 0.00 3.01
424 425 4.606255 GGGATTGGAGGGGATTTAGGAATA 59.394 45.833 0.00 0.00 0.00 1.75
425 426 5.075900 GGGATTGGAGGGGATTTAGGAATAA 59.924 44.000 0.00 0.00 0.00 1.40
426 427 6.412732 GGGATTGGAGGGGATTTAGGAATAAA 60.413 42.308 0.00 0.00 0.00 1.40
427 428 7.248976 GGATTGGAGGGGATTTAGGAATAAAT 58.751 38.462 0.00 0.00 32.81 1.40
428 429 7.734865 GGATTGGAGGGGATTTAGGAATAAATT 59.265 37.037 0.00 0.00 30.51 1.82
429 430 9.822727 GATTGGAGGGGATTTAGGAATAAATTA 57.177 33.333 0.00 0.00 30.51 1.40
431 432 9.822727 TTGGAGGGGATTTAGGAATAAATTATC 57.177 33.333 0.00 0.00 30.51 1.75
432 433 8.398743 TGGAGGGGATTTAGGAATAAATTATCC 58.601 37.037 0.00 0.00 35.88 2.59
455 456 8.895141 TCCTATTCTATTCGATTTAGGGATCA 57.105 34.615 0.00 0.00 32.59 2.92
456 457 8.972127 TCCTATTCTATTCGATTTAGGGATCAG 58.028 37.037 0.00 0.00 32.59 2.90
457 458 8.754080 CCTATTCTATTCGATTTAGGGATCAGT 58.246 37.037 0.00 0.00 30.08 3.41
461 462 8.123639 TCTATTCGATTTAGGGATCAGTTAGG 57.876 38.462 0.00 0.00 0.00 2.69
462 463 6.749036 ATTCGATTTAGGGATCAGTTAGGT 57.251 37.500 0.00 0.00 0.00 3.08
463 464 5.531122 TCGATTTAGGGATCAGTTAGGTG 57.469 43.478 0.00 0.00 0.00 4.00
464 465 4.058817 CGATTTAGGGATCAGTTAGGTGC 58.941 47.826 0.00 0.00 0.00 5.01
465 466 3.536956 TTTAGGGATCAGTTAGGTGCG 57.463 47.619 0.00 0.00 0.00 5.34
466 467 2.447408 TAGGGATCAGTTAGGTGCGA 57.553 50.000 0.00 0.00 0.00 5.10
467 468 0.824759 AGGGATCAGTTAGGTGCGAC 59.175 55.000 0.00 0.00 0.00 5.19
468 469 0.535335 GGGATCAGTTAGGTGCGACA 59.465 55.000 0.00 0.00 0.00 4.35
469 470 1.139058 GGGATCAGTTAGGTGCGACAT 59.861 52.381 0.00 0.00 0.00 3.06
470 471 2.364324 GGGATCAGTTAGGTGCGACATA 59.636 50.000 0.00 0.00 0.00 2.29
471 472 3.181469 GGGATCAGTTAGGTGCGACATAA 60.181 47.826 0.00 0.00 0.00 1.90
472 473 4.439057 GGATCAGTTAGGTGCGACATAAA 58.561 43.478 0.00 0.00 0.00 1.40
473 474 4.508124 GGATCAGTTAGGTGCGACATAAAG 59.492 45.833 0.00 0.00 0.00 1.85
474 475 3.857052 TCAGTTAGGTGCGACATAAAGG 58.143 45.455 0.00 0.00 0.00 3.11
475 476 3.512329 TCAGTTAGGTGCGACATAAAGGA 59.488 43.478 0.00 0.00 0.00 3.36
476 477 4.020928 TCAGTTAGGTGCGACATAAAGGAA 60.021 41.667 0.00 0.00 0.00 3.36
477 478 4.330074 CAGTTAGGTGCGACATAAAGGAAG 59.670 45.833 0.00 0.00 0.00 3.46
478 479 4.222145 AGTTAGGTGCGACATAAAGGAAGA 59.778 41.667 0.00 0.00 0.00 2.87
479 480 3.914426 AGGTGCGACATAAAGGAAGAT 57.086 42.857 0.00 0.00 0.00 2.40
480 481 6.097839 AGTTAGGTGCGACATAAAGGAAGATA 59.902 38.462 0.00 0.00 0.00 1.98
481 482 5.353394 AGGTGCGACATAAAGGAAGATAA 57.647 39.130 0.00 0.00 0.00 1.75
482 483 5.116882 AGGTGCGACATAAAGGAAGATAAC 58.883 41.667 0.00 0.00 0.00 1.89
483 484 4.272748 GGTGCGACATAAAGGAAGATAACC 59.727 45.833 0.00 0.00 0.00 2.85
484 485 4.025979 GTGCGACATAAAGGAAGATAACCG 60.026 45.833 0.00 0.00 0.00 4.44
485 486 4.142116 TGCGACATAAAGGAAGATAACCGA 60.142 41.667 0.00 0.00 0.00 4.69
486 487 4.807304 GCGACATAAAGGAAGATAACCGAA 59.193 41.667 0.00 0.00 0.00 4.30
487 488 5.465724 GCGACATAAAGGAAGATAACCGAAT 59.534 40.000 0.00 0.00 0.00 3.34
488 489 6.018180 GCGACATAAAGGAAGATAACCGAATT 60.018 38.462 0.00 0.00 0.00 2.17
489 490 7.466860 GCGACATAAAGGAAGATAACCGAATTT 60.467 37.037 0.00 0.00 0.00 1.82
490 491 9.037737 CGACATAAAGGAAGATAACCGAATTTA 57.962 33.333 0.00 0.00 0.00 1.40
495 496 8.678593 AAAGGAAGATAACCGAATTTATCCTC 57.321 34.615 0.00 5.28 38.69 3.71
496 497 7.619512 AGGAAGATAACCGAATTTATCCTCT 57.380 36.000 7.42 2.67 38.69 3.69
497 498 8.035448 AGGAAGATAACCGAATTTATCCTCTT 57.965 34.615 7.42 0.00 38.69 2.85
498 499 8.495260 AGGAAGATAACCGAATTTATCCTCTTT 58.505 33.333 7.42 0.00 38.69 2.52
499 500 9.774413 GGAAGATAACCGAATTTATCCTCTTTA 57.226 33.333 7.42 0.00 38.69 1.85
501 502 8.813643 AGATAACCGAATTTATCCTCTTTACG 57.186 34.615 7.42 0.00 38.69 3.18
502 503 7.871463 AGATAACCGAATTTATCCTCTTTACGG 59.129 37.037 0.00 0.00 38.69 4.02
503 504 4.124970 ACCGAATTTATCCTCTTTACGGC 58.875 43.478 0.00 0.00 41.19 5.68
504 505 3.497262 CCGAATTTATCCTCTTTACGGCC 59.503 47.826 0.00 0.00 0.00 6.13
505 506 3.183775 CGAATTTATCCTCTTTACGGCCG 59.816 47.826 26.86 26.86 0.00 6.13
506 507 2.607631 TTTATCCTCTTTACGGCCGG 57.392 50.000 31.76 11.94 0.00 6.13
507 508 1.779221 TTATCCTCTTTACGGCCGGA 58.221 50.000 31.76 21.43 0.00 5.14
508 509 2.005370 TATCCTCTTTACGGCCGGAT 57.995 50.000 31.76 21.45 38.07 4.18
509 510 2.005370 ATCCTCTTTACGGCCGGATA 57.995 50.000 31.76 16.38 32.95 2.59
510 511 1.325355 TCCTCTTTACGGCCGGATAG 58.675 55.000 31.76 25.93 0.00 2.08
511 512 0.317479 CCTCTTTACGGCCGGATAGG 59.683 60.000 31.76 23.26 44.97 2.57
512 513 0.317479 CTCTTTACGGCCGGATAGGG 59.683 60.000 31.76 22.67 41.48 3.53
513 514 1.117142 TCTTTACGGCCGGATAGGGG 61.117 60.000 31.76 12.32 41.48 4.79
514 515 1.075376 TTTACGGCCGGATAGGGGA 60.075 57.895 31.76 0.03 41.48 4.81
515 516 0.472352 TTTACGGCCGGATAGGGGAT 60.472 55.000 31.76 7.29 41.48 3.85
516 517 0.901580 TTACGGCCGGATAGGGGATC 60.902 60.000 31.76 0.00 41.48 3.36
517 518 3.760035 CGGCCGGATAGGGGATCG 61.760 72.222 20.10 0.00 41.48 3.69
518 519 3.391382 GGCCGGATAGGGGATCGG 61.391 72.222 5.05 0.00 41.48 4.18
519 520 2.603776 GCCGGATAGGGGATCGGT 60.604 66.667 5.05 0.00 41.48 4.69
520 521 2.214920 GCCGGATAGGGGATCGGTT 61.215 63.158 5.05 0.00 41.48 4.44
521 522 0.901580 GCCGGATAGGGGATCGGTTA 60.902 60.000 5.05 0.00 41.48 2.85
522 523 1.183549 CCGGATAGGGGATCGGTTAG 58.816 60.000 0.00 0.00 35.12 2.34
523 524 1.272313 CCGGATAGGGGATCGGTTAGA 60.272 57.143 0.00 0.00 35.12 2.10
524 525 2.522185 CGGATAGGGGATCGGTTAGAA 58.478 52.381 0.00 0.00 35.12 2.10
525 526 3.097614 CGGATAGGGGATCGGTTAGAAT 58.902 50.000 0.00 0.00 35.12 2.40
526 527 3.514309 CGGATAGGGGATCGGTTAGAATT 59.486 47.826 0.00 0.00 35.12 2.17
527 528 4.620803 CGGATAGGGGATCGGTTAGAATTG 60.621 50.000 0.00 0.00 35.12 2.32
528 529 4.530946 GGATAGGGGATCGGTTAGAATTGA 59.469 45.833 0.00 0.00 35.12 2.57
529 530 3.840124 AGGGGATCGGTTAGAATTGAC 57.160 47.619 0.00 0.00 0.00 3.18
530 531 2.438392 AGGGGATCGGTTAGAATTGACC 59.562 50.000 0.00 0.00 0.00 4.02
531 532 2.438392 GGGGATCGGTTAGAATTGACCT 59.562 50.000 0.00 0.00 33.69 3.85
532 533 3.118000 GGGGATCGGTTAGAATTGACCTT 60.118 47.826 0.00 0.00 33.69 3.50
533 534 4.102054 GGGGATCGGTTAGAATTGACCTTA 59.898 45.833 0.00 0.00 33.69 2.69
534 535 5.397109 GGGGATCGGTTAGAATTGACCTTAA 60.397 44.000 0.00 0.00 33.69 1.85
535 536 6.117488 GGGATCGGTTAGAATTGACCTTAAA 58.883 40.000 0.00 0.00 33.69 1.52
536 537 6.260271 GGGATCGGTTAGAATTGACCTTAAAG 59.740 42.308 0.00 0.00 33.69 1.85
537 538 6.260271 GGATCGGTTAGAATTGACCTTAAAGG 59.740 42.308 0.00 0.00 42.49 3.11
538 539 5.493809 TCGGTTAGAATTGACCTTAAAGGG 58.506 41.667 0.00 0.00 40.58 3.95
539 540 5.013391 TCGGTTAGAATTGACCTTAAAGGGT 59.987 40.000 0.00 0.00 40.58 4.34
540 541 5.708697 CGGTTAGAATTGACCTTAAAGGGTT 59.291 40.000 0.00 0.00 40.58 4.11
541 542 6.349033 CGGTTAGAATTGACCTTAAAGGGTTG 60.349 42.308 0.00 0.00 40.58 3.77
542 543 6.387465 GTTAGAATTGACCTTAAAGGGTTGC 58.613 40.000 0.00 0.00 40.58 4.17
543 544 4.740902 AGAATTGACCTTAAAGGGTTGCT 58.259 39.130 0.00 0.00 40.58 3.91
544 545 5.887754 AGAATTGACCTTAAAGGGTTGCTA 58.112 37.500 0.00 0.00 40.58 3.49
545 546 5.946377 AGAATTGACCTTAAAGGGTTGCTAG 59.054 40.000 0.00 0.00 40.58 3.42
546 547 3.713826 TGACCTTAAAGGGTTGCTAGG 57.286 47.619 0.00 0.00 40.58 3.02
547 548 2.290705 TGACCTTAAAGGGTTGCTAGGC 60.291 50.000 0.00 0.00 40.58 3.93
548 549 1.005569 ACCTTAAAGGGTTGCTAGGCC 59.994 52.381 0.00 0.00 40.58 5.19
549 550 1.379527 CTTAAAGGGTTGCTAGGCCG 58.620 55.000 0.00 0.00 0.00 6.13
550 551 0.985760 TTAAAGGGTTGCTAGGCCGA 59.014 50.000 0.00 0.00 0.00 5.54
551 552 0.985760 TAAAGGGTTGCTAGGCCGAA 59.014 50.000 0.00 0.00 0.00 4.30
552 553 0.331616 AAAGGGTTGCTAGGCCGAAT 59.668 50.000 0.00 0.00 0.00 3.34
553 554 0.394352 AAGGGTTGCTAGGCCGAATG 60.394 55.000 0.00 0.00 0.00 2.67
554 555 1.223487 GGGTTGCTAGGCCGAATGA 59.777 57.895 0.00 0.00 0.00 2.57
555 556 0.393808 GGGTTGCTAGGCCGAATGAA 60.394 55.000 0.00 0.00 0.00 2.57
556 557 1.017387 GGTTGCTAGGCCGAATGAAG 58.983 55.000 0.00 0.00 0.00 3.02
557 558 1.017387 GTTGCTAGGCCGAATGAAGG 58.983 55.000 0.00 0.00 0.00 3.46
558 559 0.107214 TTGCTAGGCCGAATGAAGGG 60.107 55.000 0.00 0.00 0.00 3.95
559 560 1.227973 GCTAGGCCGAATGAAGGGG 60.228 63.158 0.00 0.00 0.00 4.79
560 561 1.984288 GCTAGGCCGAATGAAGGGGT 61.984 60.000 0.00 0.00 0.00 4.95
583 585 0.900182 AGAGACGATGTGGTCTGGCA 60.900 55.000 2.29 0.00 46.85 4.92
594 596 1.669115 GTCTGGCACGCACATGAGT 60.669 57.895 0.00 0.00 0.00 3.41
611 613 3.976339 GTGTGCACACAGAGAGAGT 57.024 52.632 38.42 0.00 45.75 3.24
612 614 2.231215 GTGTGCACACAGAGAGAGTT 57.769 50.000 38.42 0.00 45.75 3.01
621 623 0.326264 CAGAGAGAGTTTGGGTGGGG 59.674 60.000 0.00 0.00 0.00 4.96
629 631 4.589675 TTGGGTGGGGACGTTGGC 62.590 66.667 0.00 0.00 0.00 4.52
650 655 4.778143 GCCCCTGTGCTGGGTACG 62.778 72.222 12.24 0.24 45.70 3.67
723 728 3.621715 CCTAATCGCACCACCTTAAACTC 59.378 47.826 0.00 0.00 0.00 3.01
726 731 1.068474 CGCACCACCTTAAACTCTCG 58.932 55.000 0.00 0.00 0.00 4.04
727 732 1.439679 GCACCACCTTAAACTCTCGG 58.560 55.000 0.00 0.00 0.00 4.63
728 733 1.944430 GCACCACCTTAAACTCTCGGG 60.944 57.143 0.00 0.00 0.00 5.14
729 734 1.621814 CACCACCTTAAACTCTCGGGA 59.378 52.381 0.00 0.00 0.00 5.14
743 751 1.762957 CTCGGGACTCTCTCTCTCTCT 59.237 57.143 0.00 0.00 0.00 3.10
745 753 1.762957 CGGGACTCTCTCTCTCTCTCT 59.237 57.143 0.00 0.00 0.00 3.10
807 815 0.740868 TGCTACTGGCGACTGATTGC 60.741 55.000 0.54 3.61 45.43 3.56
823 831 1.308047 TTGCAGCTCGCTCTTCAAAA 58.692 45.000 9.12 0.00 43.06 2.44
845 853 0.026803 CAGCGCGCACTATTTCTTCC 59.973 55.000 35.10 0.00 0.00 3.46
848 856 0.742990 CGCGCACTATTTCTTCCCCA 60.743 55.000 8.75 0.00 0.00 4.96
851 859 1.065418 CGCACTATTTCTTCCCCACCT 60.065 52.381 0.00 0.00 0.00 4.00
1027 1035 0.033208 GGAGTGGGAAATGGCCATGA 60.033 55.000 21.63 0.00 0.00 3.07
1482 1494 1.968493 TCGAACTGCTGACCTTACCTT 59.032 47.619 0.00 0.00 0.00 3.50
2009 2044 1.594293 CGTGCGGTTCAAGTCAGGT 60.594 57.895 0.00 0.00 0.00 4.00
2013 2048 1.366366 CGGTTCAAGTCAGGTCGGT 59.634 57.895 0.00 0.00 0.00 4.69
2129 2164 2.798689 CTCGTTCTCATCCGCGGA 59.201 61.111 33.12 33.12 0.00 5.54
2302 2340 4.463879 CACGCAGCCTGGCTAGCT 62.464 66.667 28.02 18.10 42.70 3.32
2303 2341 2.759973 ACGCAGCCTGGCTAGCTA 60.760 61.111 28.02 7.83 38.95 3.32
2304 2342 2.028778 CGCAGCCTGGCTAGCTAG 59.971 66.667 28.02 20.50 38.95 3.42
2357 2395 3.315191 CCTCCTTTTCTTCACTTTTCGCA 59.685 43.478 0.00 0.00 0.00 5.10
2358 2396 4.022849 CCTCCTTTTCTTCACTTTTCGCAT 60.023 41.667 0.00 0.00 0.00 4.73
2359 2397 5.507985 CCTCCTTTTCTTCACTTTTCGCATT 60.508 40.000 0.00 0.00 0.00 3.56
2360 2398 5.519722 TCCTTTTCTTCACTTTTCGCATTC 58.480 37.500 0.00 0.00 0.00 2.67
2361 2399 5.299279 TCCTTTTCTTCACTTTTCGCATTCT 59.701 36.000 0.00 0.00 0.00 2.40
2362 2400 5.979517 CCTTTTCTTCACTTTTCGCATTCTT 59.020 36.000 0.00 0.00 0.00 2.52
2375 2413 6.473397 TTCGCATTCTTCTTTTTCTCTCTC 57.527 37.500 0.00 0.00 0.00 3.20
2509 2548 4.188462 TCCAACGCTGAATTGTGGTATAG 58.812 43.478 0.00 0.00 0.00 1.31
2564 2606 0.236449 AATCGAACGAACGGCCAAAC 59.764 50.000 2.24 0.00 0.00 2.93
2606 2648 7.066284 CGGATTATTCTTTGAGTGTCAGGATTT 59.934 37.037 0.00 0.00 0.00 2.17
2642 2684 9.076781 TCCTACAAAAATCATCAAATTGACTGA 57.923 29.630 0.00 4.38 0.00 3.41
2643 2685 9.695526 CCTACAAAAATCATCAAATTGACTGAA 57.304 29.630 0.00 0.00 0.00 3.02
2679 2721 4.357918 AAATCTGAGTGGTGTTACTGCT 57.642 40.909 0.00 0.00 0.00 4.24
2745 2787 3.175240 CGCGTTCGGTCTGCTCTG 61.175 66.667 0.00 0.00 0.00 3.35
2746 2788 3.482783 GCGTTCGGTCTGCTCTGC 61.483 66.667 0.00 0.00 0.00 4.26
2791 2833 3.254014 CTTGGCTCGTTGGGTTGCG 62.254 63.158 0.00 0.00 0.00 4.85
2850 2892 4.021192 ACGGACTTTATTTCTCACCGGTAA 60.021 41.667 6.87 0.00 42.54 2.85
2858 2900 0.606604 TCTCACCGGTAAGTCAAGCC 59.393 55.000 6.87 0.00 0.00 4.35
3048 3097 2.282462 GGAGTGGCAGGGGTGTTG 60.282 66.667 0.00 0.00 0.00 3.33
3050 3099 3.497884 GAGTGGCAGGGGTGTTGCT 62.498 63.158 0.00 0.00 41.27 3.91
3166 3215 1.503091 GCAGATGTGTGCAATGCGA 59.497 52.632 0.00 0.00 43.41 5.10
3173 3222 4.120331 GTGCAATGCGACCTGCCC 62.120 66.667 0.00 0.00 45.60 5.36
3187 3236 4.722700 GCCCACCTCCATGTGCGT 62.723 66.667 0.00 0.00 34.85 5.24
3199 3248 1.244019 ATGTGCGTCTTCCTTTGGGC 61.244 55.000 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.506438 GTCGGTGCCTCGTGTAGC 60.506 66.667 0.00 0.00 0.00 3.58
1 2 1.945354 ATGGTCGGTGCCTCGTGTAG 61.945 60.000 0.00 0.00 0.00 2.74
2 3 1.980232 ATGGTCGGTGCCTCGTGTA 60.980 57.895 0.00 0.00 0.00 2.90
3 4 3.311110 ATGGTCGGTGCCTCGTGT 61.311 61.111 0.00 0.00 0.00 4.49
4 5 2.815211 CATGGTCGGTGCCTCGTG 60.815 66.667 0.00 0.00 0.00 4.35
5 6 4.082523 CCATGGTCGGTGCCTCGT 62.083 66.667 2.57 0.00 0.00 4.18
6 7 3.723235 CTCCATGGTCGGTGCCTCG 62.723 68.421 12.58 0.00 0.00 4.63
7 8 2.187946 CTCCATGGTCGGTGCCTC 59.812 66.667 12.58 0.00 0.00 4.70
8 9 3.402681 CCTCCATGGTCGGTGCCT 61.403 66.667 12.58 0.00 0.00 4.75
9 10 4.489771 CCCTCCATGGTCGGTGCC 62.490 72.222 12.58 0.00 0.00 5.01
10 11 4.489771 CCCCTCCATGGTCGGTGC 62.490 72.222 12.58 0.00 0.00 5.01
11 12 3.797353 CCCCCTCCATGGTCGGTG 61.797 72.222 12.58 5.03 0.00 4.94
14 15 4.489771 GTGCCCCCTCCATGGTCG 62.490 72.222 12.58 4.18 0.00 4.79
15 16 4.129148 GGTGCCCCCTCCATGGTC 62.129 72.222 12.58 0.00 0.00 4.02
17 18 3.012775 AATGGTGCCCCCTCCATGG 62.013 63.158 4.97 4.97 42.82 3.66
18 19 1.759299 CAATGGTGCCCCCTCCATG 60.759 63.158 0.00 0.00 42.82 3.66
19 20 2.248374 ACAATGGTGCCCCCTCCAT 61.248 57.895 0.00 0.00 44.88 3.41
20 21 2.863484 ACAATGGTGCCCCCTCCA 60.863 61.111 0.00 0.00 38.83 3.86
21 22 2.362889 CACAATGGTGCCCCCTCC 60.363 66.667 0.00 0.00 38.37 4.30
22 23 2.362889 CCACAATGGTGCCCCCTC 60.363 66.667 0.00 0.00 43.88 4.30
23 24 4.702274 GCCACAATGGTGCCCCCT 62.702 66.667 0.00 0.00 43.88 4.79
25 26 4.702274 AGGCCACAATGGTGCCCC 62.702 66.667 5.01 0.00 43.49 5.80
26 27 1.767654 AAAAGGCCACAATGGTGCCC 61.768 55.000 5.01 1.11 42.80 5.36
27 28 0.108396 AAAAAGGCCACAATGGTGCC 59.892 50.000 5.01 7.13 43.88 5.01
28 29 1.228533 CAAAAAGGCCACAATGGTGC 58.771 50.000 5.01 0.00 43.88 5.01
29 30 2.618442 ACAAAAAGGCCACAATGGTG 57.382 45.000 5.01 0.00 44.85 4.17
30 31 2.771372 AGAACAAAAAGGCCACAATGGT 59.229 40.909 5.01 0.00 40.46 3.55
31 32 3.473923 AGAACAAAAAGGCCACAATGG 57.526 42.857 5.01 0.00 41.55 3.16
32 33 4.696455 AGAAGAACAAAAAGGCCACAATG 58.304 39.130 5.01 0.63 0.00 2.82
33 34 6.478512 TTAGAAGAACAAAAAGGCCACAAT 57.521 33.333 5.01 0.00 0.00 2.71
34 35 5.681179 GCTTAGAAGAACAAAAAGGCCACAA 60.681 40.000 5.01 0.00 0.00 3.33
35 36 4.202111 GCTTAGAAGAACAAAAAGGCCACA 60.202 41.667 5.01 0.00 0.00 4.17
36 37 4.299155 GCTTAGAAGAACAAAAAGGCCAC 58.701 43.478 5.01 0.00 0.00 5.01
37 38 3.004315 CGCTTAGAAGAACAAAAAGGCCA 59.996 43.478 5.01 0.00 0.00 5.36
38 39 3.565516 CGCTTAGAAGAACAAAAAGGCC 58.434 45.455 0.00 0.00 0.00 5.19
39 40 3.004419 ACCGCTTAGAAGAACAAAAAGGC 59.996 43.478 0.00 0.00 0.00 4.35
40 41 4.515567 AGACCGCTTAGAAGAACAAAAAGG 59.484 41.667 0.00 0.00 0.00 3.11
41 42 5.334182 GGAGACCGCTTAGAAGAACAAAAAG 60.334 44.000 0.00 0.00 0.00 2.27
42 43 4.514066 GGAGACCGCTTAGAAGAACAAAAA 59.486 41.667 0.00 0.00 0.00 1.94
43 44 4.062991 GGAGACCGCTTAGAAGAACAAAA 58.937 43.478 0.00 0.00 0.00 2.44
44 45 3.323979 AGGAGACCGCTTAGAAGAACAAA 59.676 43.478 0.00 0.00 0.00 2.83
45 46 2.897969 AGGAGACCGCTTAGAAGAACAA 59.102 45.455 0.00 0.00 0.00 2.83
46 47 2.492484 GAGGAGACCGCTTAGAAGAACA 59.508 50.000 0.00 0.00 0.00 3.18
47 48 2.478200 CGAGGAGACCGCTTAGAAGAAC 60.478 54.545 0.00 0.00 0.00 3.01
48 49 1.743958 CGAGGAGACCGCTTAGAAGAA 59.256 52.381 0.00 0.00 0.00 2.52
49 50 1.380524 CGAGGAGACCGCTTAGAAGA 58.619 55.000 0.00 0.00 0.00 2.87
50 51 0.382515 CCGAGGAGACCGCTTAGAAG 59.617 60.000 0.00 0.00 0.00 2.85
51 52 1.664321 GCCGAGGAGACCGCTTAGAA 61.664 60.000 0.00 0.00 0.00 2.10
52 53 2.119655 GCCGAGGAGACCGCTTAGA 61.120 63.158 0.00 0.00 0.00 2.10
53 54 2.413765 GCCGAGGAGACCGCTTAG 59.586 66.667 0.00 0.00 0.00 2.18
54 55 3.515286 CGCCGAGGAGACCGCTTA 61.515 66.667 0.00 0.00 0.00 3.09
82 83 4.273257 AAAAACCAACGGCGGCGG 62.273 61.111 35.05 19.88 0.00 6.13
83 84 1.843734 TAGAAAAACCAACGGCGGCG 61.844 55.000 31.06 31.06 0.00 6.46
84 85 0.109919 CTAGAAAAACCAACGGCGGC 60.110 55.000 13.24 0.00 0.00 6.53
85 86 0.109919 GCTAGAAAAACCAACGGCGG 60.110 55.000 13.24 0.00 0.00 6.13
86 87 0.872388 AGCTAGAAAAACCAACGGCG 59.128 50.000 4.80 4.80 0.00 6.46
87 88 2.152016 AGAGCTAGAAAAACCAACGGC 58.848 47.619 0.00 0.00 0.00 5.68
88 89 4.830826 AAAGAGCTAGAAAAACCAACGG 57.169 40.909 0.00 0.00 0.00 4.44
89 90 4.976116 CCAAAAGAGCTAGAAAAACCAACG 59.024 41.667 0.00 0.00 0.00 4.10
90 91 4.745125 GCCAAAAGAGCTAGAAAAACCAAC 59.255 41.667 0.00 0.00 0.00 3.77
91 92 4.202212 GGCCAAAAGAGCTAGAAAAACCAA 60.202 41.667 0.00 0.00 0.00 3.67
92 93 3.320826 GGCCAAAAGAGCTAGAAAAACCA 59.679 43.478 0.00 0.00 0.00 3.67
93 94 3.306088 GGGCCAAAAGAGCTAGAAAAACC 60.306 47.826 4.39 0.00 0.00 3.27
94 95 3.306088 GGGGCCAAAAGAGCTAGAAAAAC 60.306 47.826 4.39 0.00 0.00 2.43
95 96 2.897326 GGGGCCAAAAGAGCTAGAAAAA 59.103 45.455 4.39 0.00 0.00 1.94
96 97 2.525368 GGGGCCAAAAGAGCTAGAAAA 58.475 47.619 4.39 0.00 0.00 2.29
97 98 1.613255 CGGGGCCAAAAGAGCTAGAAA 60.613 52.381 4.39 0.00 0.00 2.52
98 99 0.035439 CGGGGCCAAAAGAGCTAGAA 60.035 55.000 4.39 0.00 0.00 2.10
99 100 1.602237 CGGGGCCAAAAGAGCTAGA 59.398 57.895 4.39 0.00 0.00 2.43
100 101 1.452108 CCGGGGCCAAAAGAGCTAG 60.452 63.158 4.39 0.00 0.00 3.42
101 102 2.228480 ACCGGGGCCAAAAGAGCTA 61.228 57.895 6.32 0.00 0.00 3.32
102 103 3.580319 ACCGGGGCCAAAAGAGCT 61.580 61.111 6.32 0.00 0.00 4.09
103 104 3.373565 CACCGGGGCCAAAAGAGC 61.374 66.667 6.32 0.00 0.00 4.09
104 105 2.676471 CCACCGGGGCCAAAAGAG 60.676 66.667 6.32 0.00 0.00 2.85
151 152 3.401243 CTCCAATCGCGGCAAAGGC 62.401 63.158 6.13 0.00 40.13 4.35
152 153 2.793946 CTCCAATCGCGGCAAAGG 59.206 61.111 6.13 1.64 0.00 3.11
153 154 2.100991 GCTCCAATCGCGGCAAAG 59.899 61.111 6.13 0.00 0.00 2.77
154 155 3.439540 GGCTCCAATCGCGGCAAA 61.440 61.111 6.13 0.00 0.00 3.68
169 170 2.815647 CCGAGTTCAAGCTCCGGC 60.816 66.667 0.00 0.00 39.06 6.13
170 171 1.738099 CACCGAGTTCAAGCTCCGG 60.738 63.158 0.00 0.00 36.22 5.14
171 172 1.738099 CCACCGAGTTCAAGCTCCG 60.738 63.158 0.00 0.00 32.11 4.63
172 173 0.670854 GTCCACCGAGTTCAAGCTCC 60.671 60.000 0.00 0.00 32.11 4.70
173 174 0.318762 AGTCCACCGAGTTCAAGCTC 59.681 55.000 0.00 0.00 0.00 4.09
174 175 0.759346 AAGTCCACCGAGTTCAAGCT 59.241 50.000 0.00 0.00 0.00 3.74
175 176 1.594331 AAAGTCCACCGAGTTCAAGC 58.406 50.000 0.00 0.00 30.96 4.01
176 177 5.106673 GGATAAAAAGTCCACCGAGTTCAAG 60.107 44.000 0.00 0.00 35.76 3.02
177 178 4.758165 GGATAAAAAGTCCACCGAGTTCAA 59.242 41.667 0.00 0.00 35.76 2.69
178 179 4.320870 GGATAAAAAGTCCACCGAGTTCA 58.679 43.478 0.00 0.00 35.76 3.18
179 180 3.688185 GGGATAAAAAGTCCACCGAGTTC 59.312 47.826 0.00 0.00 37.49 3.01
180 181 3.560668 GGGGATAAAAAGTCCACCGAGTT 60.561 47.826 0.00 0.00 37.49 3.01
181 182 2.026542 GGGGATAAAAAGTCCACCGAGT 60.027 50.000 0.00 0.00 37.49 4.18
182 183 2.026636 TGGGGATAAAAAGTCCACCGAG 60.027 50.000 0.00 0.00 38.44 4.63
183 184 1.986631 TGGGGATAAAAAGTCCACCGA 59.013 47.619 0.00 0.00 38.44 4.69
184 185 2.500392 TGGGGATAAAAAGTCCACCG 57.500 50.000 0.00 0.00 38.44 4.94
185 186 2.496070 GCTTGGGGATAAAAAGTCCACC 59.504 50.000 0.00 0.00 38.44 4.61
186 187 3.431415 AGCTTGGGGATAAAAAGTCCAC 58.569 45.455 0.00 0.00 39.70 4.02
187 188 3.825908 AGCTTGGGGATAAAAAGTCCA 57.174 42.857 0.00 0.00 37.49 4.02
188 189 5.246203 AGAAAAGCTTGGGGATAAAAAGTCC 59.754 40.000 0.00 0.00 34.92 3.85
189 190 6.346477 AGAAAAGCTTGGGGATAAAAAGTC 57.654 37.500 0.00 0.00 0.00 3.01
190 191 6.747414 AAGAAAAGCTTGGGGATAAAAAGT 57.253 33.333 0.00 0.00 34.93 2.66
191 192 6.427853 CCAAAGAAAAGCTTGGGGATAAAAAG 59.572 38.462 0.00 0.00 43.08 2.27
192 193 6.295249 CCAAAGAAAAGCTTGGGGATAAAAA 58.705 36.000 0.00 0.00 43.08 1.94
193 194 5.744594 GCCAAAGAAAAGCTTGGGGATAAAA 60.745 40.000 0.00 0.00 46.34 1.52
194 195 4.262851 GCCAAAGAAAAGCTTGGGGATAAA 60.263 41.667 0.00 0.00 46.34 1.40
195 196 3.260632 GCCAAAGAAAAGCTTGGGGATAA 59.739 43.478 0.00 0.00 46.34 1.75
196 197 2.831526 GCCAAAGAAAAGCTTGGGGATA 59.168 45.455 0.00 0.00 46.34 2.59
197 198 1.625315 GCCAAAGAAAAGCTTGGGGAT 59.375 47.619 0.00 0.00 46.34 3.85
198 199 1.047801 GCCAAAGAAAAGCTTGGGGA 58.952 50.000 0.00 0.00 46.34 4.81
199 200 0.319813 CGCCAAAGAAAAGCTTGGGG 60.320 55.000 0.00 0.33 46.34 4.96
201 202 1.277495 CGCGCCAAAGAAAAGCTTGG 61.277 55.000 0.00 0.00 36.80 3.61
202 203 1.277495 CCGCGCCAAAGAAAAGCTTG 61.277 55.000 0.00 0.00 36.80 4.01
203 204 1.007387 CCGCGCCAAAGAAAAGCTT 60.007 52.632 0.00 0.00 38.88 3.74
204 205 2.644992 CCGCGCCAAAGAAAAGCT 59.355 55.556 0.00 0.00 0.00 3.74
205 206 2.430751 CCCGCGCCAAAGAAAAGC 60.431 61.111 0.00 0.00 0.00 3.51
206 207 2.082629 AACCCCGCGCCAAAGAAAAG 62.083 55.000 0.00 0.00 0.00 2.27
207 208 2.077821 GAACCCCGCGCCAAAGAAAA 62.078 55.000 0.00 0.00 0.00 2.29
208 209 2.519780 AACCCCGCGCCAAAGAAA 60.520 55.556 0.00 0.00 0.00 2.52
209 210 2.981350 GAACCCCGCGCCAAAGAA 60.981 61.111 0.00 0.00 0.00 2.52
226 227 2.072990 GCTTTTCGCTATCGGAAACG 57.927 50.000 0.00 0.00 46.19 3.60
227 228 1.267383 CGGCTTTTCGCTATCGGAAAC 60.267 52.381 0.00 0.00 38.19 2.78
228 229 1.003851 CGGCTTTTCGCTATCGGAAA 58.996 50.000 0.00 0.00 40.59 3.13
229 230 0.808453 CCGGCTTTTCGCTATCGGAA 60.808 55.000 0.00 0.00 41.60 4.30
230 231 1.227147 CCGGCTTTTCGCTATCGGA 60.227 57.895 0.00 0.00 41.60 4.55
231 232 2.882366 GCCGGCTTTTCGCTATCGG 61.882 63.158 22.15 0.00 41.86 4.18
232 233 2.626455 GCCGGCTTTTCGCTATCG 59.374 61.111 22.15 0.00 39.13 2.92
233 234 2.626455 CGCCGGCTTTTCGCTATC 59.374 61.111 26.68 0.00 39.13 2.08
234 235 2.895372 CCGCCGGCTTTTCGCTAT 60.895 61.111 26.68 0.00 39.13 2.97
249 250 4.410400 GACCCTTCAGCCACCCCG 62.410 72.222 0.00 0.00 0.00 5.73
250 251 4.048470 GGACCCTTCAGCCACCCC 62.048 72.222 0.00 0.00 0.00 4.95
251 252 3.256960 TGGACCCTTCAGCCACCC 61.257 66.667 0.00 0.00 0.00 4.61
252 253 2.352805 CTGGACCCTTCAGCCACC 59.647 66.667 0.00 0.00 0.00 4.61
253 254 2.352805 CCTGGACCCTTCAGCCAC 59.647 66.667 0.00 0.00 0.00 5.01
254 255 2.763988 TAGCCTGGACCCTTCAGCCA 62.764 60.000 0.00 0.00 0.00 4.75
255 256 1.348775 ATAGCCTGGACCCTTCAGCC 61.349 60.000 0.00 0.00 0.00 4.85
256 257 0.107643 GATAGCCTGGACCCTTCAGC 59.892 60.000 0.00 0.00 0.00 4.26
257 258 1.500474 TGATAGCCTGGACCCTTCAG 58.500 55.000 0.00 0.00 0.00 3.02
258 259 1.965414 TTGATAGCCTGGACCCTTCA 58.035 50.000 0.00 0.00 0.00 3.02
259 260 3.481453 GAATTGATAGCCTGGACCCTTC 58.519 50.000 0.00 0.00 0.00 3.46
260 261 2.175715 GGAATTGATAGCCTGGACCCTT 59.824 50.000 0.00 0.00 0.00 3.95
261 262 1.777272 GGAATTGATAGCCTGGACCCT 59.223 52.381 0.00 0.00 0.00 4.34
262 263 1.543429 CGGAATTGATAGCCTGGACCC 60.543 57.143 0.00 0.00 0.00 4.46
263 264 1.543429 CCGGAATTGATAGCCTGGACC 60.543 57.143 0.00 0.00 0.00 4.46
264 265 1.884235 CCGGAATTGATAGCCTGGAC 58.116 55.000 0.00 0.00 0.00 4.02
265 266 0.108585 GCCGGAATTGATAGCCTGGA 59.891 55.000 5.05 0.00 0.00 3.86
266 267 1.230635 CGCCGGAATTGATAGCCTGG 61.231 60.000 5.05 0.00 0.00 4.45
267 268 1.230635 CCGCCGGAATTGATAGCCTG 61.231 60.000 5.05 0.00 0.00 4.85
268 269 1.071471 CCGCCGGAATTGATAGCCT 59.929 57.895 5.05 0.00 0.00 4.58
269 270 1.966451 CCCGCCGGAATTGATAGCC 60.966 63.158 5.05 0.00 0.00 3.93
270 271 0.951040 CTCCCGCCGGAATTGATAGC 60.951 60.000 5.05 0.00 37.86 2.97
271 272 0.320771 CCTCCCGCCGGAATTGATAG 60.321 60.000 5.05 0.00 37.86 2.08
272 273 1.752198 CCTCCCGCCGGAATTGATA 59.248 57.895 5.05 0.00 37.86 2.15
273 274 2.510906 CCTCCCGCCGGAATTGAT 59.489 61.111 5.05 0.00 37.86 2.57
274 275 3.792736 CCCTCCCGCCGGAATTGA 61.793 66.667 5.05 0.00 37.86 2.57
275 276 4.875713 CCCCTCCCGCCGGAATTG 62.876 72.222 5.05 0.00 37.86 2.32
284 285 4.856801 CAATGACCGCCCCTCCCG 62.857 72.222 0.00 0.00 0.00 5.14
285 286 4.506255 CCAATGACCGCCCCTCCC 62.506 72.222 0.00 0.00 0.00 4.30
286 287 3.728373 ACCAATGACCGCCCCTCC 61.728 66.667 0.00 0.00 0.00 4.30
287 288 2.438434 CACCAATGACCGCCCCTC 60.438 66.667 0.00 0.00 0.00 4.30
288 289 4.047125 CCACCAATGACCGCCCCT 62.047 66.667 0.00 0.00 0.00 4.79
294 295 3.443045 CAGCCGCCACCAATGACC 61.443 66.667 0.00 0.00 0.00 4.02
295 296 3.443045 CCAGCCGCCACCAATGAC 61.443 66.667 0.00 0.00 0.00 3.06
312 313 4.189188 CATTCCTGCTGCAGCCGC 62.189 66.667 34.64 13.19 41.18 6.53
313 314 3.515286 CCATTCCTGCTGCAGCCG 61.515 66.667 34.64 28.21 41.18 5.52
314 315 2.044650 TCCATTCCTGCTGCAGCC 60.045 61.111 34.64 17.82 41.18 4.85
315 316 2.772691 GCTCCATTCCTGCTGCAGC 61.773 63.158 31.89 31.89 42.50 5.25
316 317 2.119655 GGCTCCATTCCTGCTGCAG 61.120 63.158 22.44 22.44 0.00 4.41
317 318 2.044650 GGCTCCATTCCTGCTGCA 60.045 61.111 0.88 0.88 0.00 4.41
318 319 3.207669 CGGCTCCATTCCTGCTGC 61.208 66.667 0.00 0.00 0.00 5.25
319 320 2.515523 CCGGCTCCATTCCTGCTG 60.516 66.667 0.00 0.00 0.00 4.41
320 321 4.496336 GCCGGCTCCATTCCTGCT 62.496 66.667 22.15 0.00 32.09 4.24
325 326 3.880846 CTTGCGCCGGCTCCATTC 61.881 66.667 26.68 6.79 40.82 2.67
335 336 4.821589 CTCTCCCGTCCTTGCGCC 62.822 72.222 4.18 0.00 0.00 6.53
336 337 3.708220 CTCTCTCCCGTCCTTGCGC 62.708 68.421 0.00 0.00 0.00 6.09
337 338 2.492090 CTCTCTCCCGTCCTTGCG 59.508 66.667 0.00 0.00 0.00 4.85
338 339 2.726351 CCCTCTCTCCCGTCCTTGC 61.726 68.421 0.00 0.00 0.00 4.01
339 340 2.060980 CCCCTCTCTCCCGTCCTTG 61.061 68.421 0.00 0.00 0.00 3.61
340 341 2.364961 CCCCTCTCTCCCGTCCTT 59.635 66.667 0.00 0.00 0.00 3.36
341 342 3.756783 CCCCCTCTCTCCCGTCCT 61.757 72.222 0.00 0.00 0.00 3.85
343 344 4.779733 TGCCCCCTCTCTCCCGTC 62.780 72.222 0.00 0.00 0.00 4.79
345 346 3.375443 TAGTGCCCCCTCTCTCCCG 62.375 68.421 0.00 0.00 0.00 5.14
346 347 1.762858 GTAGTGCCCCCTCTCTCCC 60.763 68.421 0.00 0.00 0.00 4.30
347 348 0.325765 AAGTAGTGCCCCCTCTCTCC 60.326 60.000 0.00 0.00 0.00 3.71
348 349 1.574263 AAAGTAGTGCCCCCTCTCTC 58.426 55.000 0.00 0.00 0.00 3.20
349 350 2.046280 AAAAGTAGTGCCCCCTCTCT 57.954 50.000 0.00 0.00 0.00 3.10
350 351 2.838813 AGTAAAAGTAGTGCCCCCTCTC 59.161 50.000 0.00 0.00 0.00 3.20
351 352 2.917205 AGTAAAAGTAGTGCCCCCTCT 58.083 47.619 0.00 0.00 0.00 3.69
352 353 3.715638 AAGTAAAAGTAGTGCCCCCTC 57.284 47.619 0.00 0.00 0.00 4.30
353 354 3.054582 GCTAAGTAAAAGTAGTGCCCCCT 60.055 47.826 0.00 0.00 0.00 4.79
354 355 3.276857 GCTAAGTAAAAGTAGTGCCCCC 58.723 50.000 0.00 0.00 0.00 5.40
355 356 3.276857 GGCTAAGTAAAAGTAGTGCCCC 58.723 50.000 0.00 0.00 33.66 5.80
356 357 2.934553 CGGCTAAGTAAAAGTAGTGCCC 59.065 50.000 0.00 0.00 36.11 5.36
357 358 2.350804 GCGGCTAAGTAAAAGTAGTGCC 59.649 50.000 0.00 0.00 36.14 5.01
358 359 2.028883 CGCGGCTAAGTAAAAGTAGTGC 59.971 50.000 0.00 0.00 0.00 4.40
359 360 2.601763 CCGCGGCTAAGTAAAAGTAGTG 59.398 50.000 14.67 0.00 0.00 2.74
360 361 2.417787 CCCGCGGCTAAGTAAAAGTAGT 60.418 50.000 22.85 0.00 0.00 2.73
361 362 2.199236 CCCGCGGCTAAGTAAAAGTAG 58.801 52.381 22.85 0.00 0.00 2.57
362 363 1.740043 GCCCGCGGCTAAGTAAAAGTA 60.740 52.381 22.85 0.00 46.69 2.24
363 364 1.022982 GCCCGCGGCTAAGTAAAAGT 61.023 55.000 22.85 0.00 46.69 2.66
364 365 1.719709 GCCCGCGGCTAAGTAAAAG 59.280 57.895 22.85 2.44 46.69 2.27
365 366 3.893572 GCCCGCGGCTAAGTAAAA 58.106 55.556 22.85 0.00 46.69 1.52
377 378 2.660258 AATATCCTCACCGTGCCCGC 62.660 60.000 0.00 0.00 0.00 6.13
378 379 0.179056 AAATATCCTCACCGTGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
379 380 2.490991 GTAAATATCCTCACCGTGCCC 58.509 52.381 0.00 0.00 0.00 5.36
380 381 2.132762 CGTAAATATCCTCACCGTGCC 58.867 52.381 0.00 0.00 0.00 5.01
381 382 2.132762 CCGTAAATATCCTCACCGTGC 58.867 52.381 0.00 0.00 0.00 5.34
382 383 2.547218 CCCCGTAAATATCCTCACCGTG 60.547 54.545 0.00 0.00 0.00 4.94
383 384 1.690352 CCCCGTAAATATCCTCACCGT 59.310 52.381 0.00 0.00 0.00 4.83
384 385 1.965643 TCCCCGTAAATATCCTCACCG 59.034 52.381 0.00 0.00 0.00 4.94
385 386 4.324267 CAATCCCCGTAAATATCCTCACC 58.676 47.826 0.00 0.00 0.00 4.02
386 387 4.041198 TCCAATCCCCGTAAATATCCTCAC 59.959 45.833 0.00 0.00 0.00 3.51
387 388 4.236195 TCCAATCCCCGTAAATATCCTCA 58.764 43.478 0.00 0.00 0.00 3.86
388 389 4.323562 CCTCCAATCCCCGTAAATATCCTC 60.324 50.000 0.00 0.00 0.00 3.71
389 390 3.587506 CCTCCAATCCCCGTAAATATCCT 59.412 47.826 0.00 0.00 0.00 3.24
390 391 3.308188 CCCTCCAATCCCCGTAAATATCC 60.308 52.174 0.00 0.00 0.00 2.59
391 392 3.308188 CCCCTCCAATCCCCGTAAATATC 60.308 52.174 0.00 0.00 0.00 1.63
392 393 2.647802 CCCCTCCAATCCCCGTAAATAT 59.352 50.000 0.00 0.00 0.00 1.28
393 394 2.059490 CCCCTCCAATCCCCGTAAATA 58.941 52.381 0.00 0.00 0.00 1.40
394 395 0.850784 CCCCTCCAATCCCCGTAAAT 59.149 55.000 0.00 0.00 0.00 1.40
395 396 0.253254 TCCCCTCCAATCCCCGTAAA 60.253 55.000 0.00 0.00 0.00 2.01
396 397 0.029474 ATCCCCTCCAATCCCCGTAA 60.029 55.000 0.00 0.00 0.00 3.18
397 398 0.029474 AATCCCCTCCAATCCCCGTA 60.029 55.000 0.00 0.00 0.00 4.02
398 399 0.924226 AAATCCCCTCCAATCCCCGT 60.924 55.000 0.00 0.00 0.00 5.28
399 400 1.073923 CTAAATCCCCTCCAATCCCCG 59.926 57.143 0.00 0.00 0.00 5.73
400 401 1.429299 CCTAAATCCCCTCCAATCCCC 59.571 57.143 0.00 0.00 0.00 4.81
401 402 2.428901 TCCTAAATCCCCTCCAATCCC 58.571 52.381 0.00 0.00 0.00 3.85
402 403 4.749048 ATTCCTAAATCCCCTCCAATCC 57.251 45.455 0.00 0.00 0.00 3.01
403 404 8.727100 AATTTATTCCTAAATCCCCTCCAATC 57.273 34.615 0.00 0.00 36.70 2.67
405 406 9.822727 GATAATTTATTCCTAAATCCCCTCCAA 57.177 33.333 0.00 0.00 36.70 3.53
406 407 8.398743 GGATAATTTATTCCTAAATCCCCTCCA 58.601 37.037 0.00 0.00 36.70 3.86
407 408 8.624670 AGGATAATTTATTCCTAAATCCCCTCC 58.375 37.037 3.22 0.00 36.70 4.30
429 430 9.494055 TGATCCCTAAATCGAATAGAATAGGAT 57.506 33.333 9.51 11.34 41.41 3.24
430 431 8.895141 TGATCCCTAAATCGAATAGAATAGGA 57.105 34.615 9.51 7.95 41.41 2.94
431 432 8.754080 ACTGATCCCTAAATCGAATAGAATAGG 58.246 37.037 9.51 6.06 39.92 2.57
435 436 8.585881 CCTAACTGATCCCTAAATCGAATAGAA 58.414 37.037 9.51 0.12 0.00 2.10
436 437 7.728981 ACCTAACTGATCCCTAAATCGAATAGA 59.271 37.037 9.51 0.00 0.00 1.98
437 438 7.815068 CACCTAACTGATCCCTAAATCGAATAG 59.185 40.741 0.00 0.00 0.00 1.73
438 439 7.667557 CACCTAACTGATCCCTAAATCGAATA 58.332 38.462 0.00 0.00 0.00 1.75
439 440 6.525629 CACCTAACTGATCCCTAAATCGAAT 58.474 40.000 0.00 0.00 0.00 3.34
440 441 5.684030 GCACCTAACTGATCCCTAAATCGAA 60.684 44.000 0.00 0.00 0.00 3.71
441 442 4.202223 GCACCTAACTGATCCCTAAATCGA 60.202 45.833 0.00 0.00 0.00 3.59
442 443 4.058817 GCACCTAACTGATCCCTAAATCG 58.941 47.826 0.00 0.00 0.00 3.34
443 444 4.058817 CGCACCTAACTGATCCCTAAATC 58.941 47.826 0.00 0.00 0.00 2.17
444 445 3.709653 TCGCACCTAACTGATCCCTAAAT 59.290 43.478 0.00 0.00 0.00 1.40
445 446 3.101437 TCGCACCTAACTGATCCCTAAA 58.899 45.455 0.00 0.00 0.00 1.85
446 447 2.429610 GTCGCACCTAACTGATCCCTAA 59.570 50.000 0.00 0.00 0.00 2.69
447 448 2.029623 GTCGCACCTAACTGATCCCTA 58.970 52.381 0.00 0.00 0.00 3.53
448 449 0.824759 GTCGCACCTAACTGATCCCT 59.175 55.000 0.00 0.00 0.00 4.20
449 450 0.535335 TGTCGCACCTAACTGATCCC 59.465 55.000 0.00 0.00 0.00 3.85
450 451 2.604046 ATGTCGCACCTAACTGATCC 57.396 50.000 0.00 0.00 0.00 3.36
451 452 4.508124 CCTTTATGTCGCACCTAACTGATC 59.492 45.833 0.00 0.00 0.00 2.92
452 453 4.161565 TCCTTTATGTCGCACCTAACTGAT 59.838 41.667 0.00 0.00 0.00 2.90
453 454 3.512329 TCCTTTATGTCGCACCTAACTGA 59.488 43.478 0.00 0.00 0.00 3.41
454 455 3.857052 TCCTTTATGTCGCACCTAACTG 58.143 45.455 0.00 0.00 0.00 3.16
455 456 4.222145 TCTTCCTTTATGTCGCACCTAACT 59.778 41.667 0.00 0.00 0.00 2.24
456 457 4.501071 TCTTCCTTTATGTCGCACCTAAC 58.499 43.478 0.00 0.00 0.00 2.34
457 458 4.811969 TCTTCCTTTATGTCGCACCTAA 57.188 40.909 0.00 0.00 0.00 2.69
458 459 6.278363 GTTATCTTCCTTTATGTCGCACCTA 58.722 40.000 0.00 0.00 0.00 3.08
459 460 3.914426 ATCTTCCTTTATGTCGCACCT 57.086 42.857 0.00 0.00 0.00 4.00
460 461 4.272748 GGTTATCTTCCTTTATGTCGCACC 59.727 45.833 0.00 0.00 0.00 5.01
461 462 4.025979 CGGTTATCTTCCTTTATGTCGCAC 60.026 45.833 0.00 0.00 0.00 5.34
462 463 4.116961 CGGTTATCTTCCTTTATGTCGCA 58.883 43.478 0.00 0.00 0.00 5.10
463 464 4.365723 TCGGTTATCTTCCTTTATGTCGC 58.634 43.478 0.00 0.00 0.00 5.19
464 465 7.478520 AATTCGGTTATCTTCCTTTATGTCG 57.521 36.000 0.00 0.00 0.00 4.35
469 470 9.774413 GAGGATAAATTCGGTTATCTTCCTTTA 57.226 33.333 11.82 0.00 39.17 1.85
470 471 8.495260 AGAGGATAAATTCGGTTATCTTCCTTT 58.505 33.333 15.95 1.84 42.93 3.11
471 472 8.035448 AGAGGATAAATTCGGTTATCTTCCTT 57.965 34.615 15.95 4.25 42.93 3.36
472 473 7.619512 AGAGGATAAATTCGGTTATCTTCCT 57.380 36.000 15.95 6.97 42.93 3.36
473 474 8.678593 AAAGAGGATAAATTCGGTTATCTTCC 57.321 34.615 15.95 3.34 42.93 3.46
475 476 9.257651 CGTAAAGAGGATAAATTCGGTTATCTT 57.742 33.333 11.59 6.58 39.47 2.40
476 477 7.871463 CCGTAAAGAGGATAAATTCGGTTATCT 59.129 37.037 11.59 0.00 39.47 1.98
477 478 7.359849 GCCGTAAAGAGGATAAATTCGGTTATC 60.360 40.741 0.00 6.10 39.01 1.75
478 479 6.426025 GCCGTAAAGAGGATAAATTCGGTTAT 59.574 38.462 0.00 0.00 38.07 1.89
479 480 5.754890 GCCGTAAAGAGGATAAATTCGGTTA 59.245 40.000 0.00 0.00 38.07 2.85
480 481 4.573607 GCCGTAAAGAGGATAAATTCGGTT 59.426 41.667 0.00 0.00 38.07 4.44
481 482 4.124970 GCCGTAAAGAGGATAAATTCGGT 58.875 43.478 0.00 0.00 38.07 4.69
482 483 3.497262 GGCCGTAAAGAGGATAAATTCGG 59.503 47.826 0.00 0.00 38.67 4.30
483 484 3.183775 CGGCCGTAAAGAGGATAAATTCG 59.816 47.826 19.50 0.00 0.00 3.34
484 485 3.497262 CCGGCCGTAAAGAGGATAAATTC 59.503 47.826 26.12 0.00 0.00 2.17
485 486 3.135167 TCCGGCCGTAAAGAGGATAAATT 59.865 43.478 26.12 0.00 0.00 1.82
486 487 2.701951 TCCGGCCGTAAAGAGGATAAAT 59.298 45.455 26.12 0.00 0.00 1.40
487 488 2.109774 TCCGGCCGTAAAGAGGATAAA 58.890 47.619 26.12 0.00 0.00 1.40
488 489 1.779221 TCCGGCCGTAAAGAGGATAA 58.221 50.000 26.12 0.00 0.00 1.75
489 490 2.005370 ATCCGGCCGTAAAGAGGATA 57.995 50.000 26.12 0.00 39.68 2.59
490 491 1.893801 CTATCCGGCCGTAAAGAGGAT 59.106 52.381 26.12 19.01 43.41 3.24
491 492 1.325355 CTATCCGGCCGTAAAGAGGA 58.675 55.000 26.12 12.70 35.24 3.71
492 493 0.317479 CCTATCCGGCCGTAAAGAGG 59.683 60.000 26.12 20.02 0.00 3.69
493 494 0.317479 CCCTATCCGGCCGTAAAGAG 59.683 60.000 26.12 15.06 0.00 2.85
494 495 1.117142 CCCCTATCCGGCCGTAAAGA 61.117 60.000 26.12 14.76 0.00 2.52
495 496 1.117142 TCCCCTATCCGGCCGTAAAG 61.117 60.000 26.12 16.92 0.00 1.85
496 497 0.472352 ATCCCCTATCCGGCCGTAAA 60.472 55.000 26.12 9.71 0.00 2.01
497 498 0.901580 GATCCCCTATCCGGCCGTAA 60.902 60.000 26.12 12.65 0.00 3.18
498 499 1.304713 GATCCCCTATCCGGCCGTA 60.305 63.158 26.12 9.32 0.00 4.02
499 500 2.603776 GATCCCCTATCCGGCCGT 60.604 66.667 26.12 9.29 0.00 5.68
500 501 3.760035 CGATCCCCTATCCGGCCG 61.760 72.222 21.04 21.04 0.00 6.13
501 502 3.391382 CCGATCCCCTATCCGGCC 61.391 72.222 0.00 0.00 0.00 6.13
502 503 0.901580 TAACCGATCCCCTATCCGGC 60.902 60.000 0.00 0.00 33.91 6.13
503 504 1.183549 CTAACCGATCCCCTATCCGG 58.816 60.000 0.00 0.00 35.59 5.14
504 505 2.211250 TCTAACCGATCCCCTATCCG 57.789 55.000 0.00 0.00 0.00 4.18
505 506 4.530946 TCAATTCTAACCGATCCCCTATCC 59.469 45.833 0.00 0.00 0.00 2.59
506 507 5.480205 GTCAATTCTAACCGATCCCCTATC 58.520 45.833 0.00 0.00 0.00 2.08
507 508 4.286291 GGTCAATTCTAACCGATCCCCTAT 59.714 45.833 0.00 0.00 0.00 2.57
508 509 3.644738 GGTCAATTCTAACCGATCCCCTA 59.355 47.826 0.00 0.00 0.00 3.53
509 510 2.438392 GGTCAATTCTAACCGATCCCCT 59.562 50.000 0.00 0.00 0.00 4.79
510 511 2.438392 AGGTCAATTCTAACCGATCCCC 59.562 50.000 0.00 0.00 40.63 4.81
511 512 3.840124 AGGTCAATTCTAACCGATCCC 57.160 47.619 0.00 0.00 40.63 3.85
512 513 6.260271 CCTTTAAGGTCAATTCTAACCGATCC 59.740 42.308 2.20 0.00 40.63 3.36
513 514 6.260271 CCCTTTAAGGTCAATTCTAACCGATC 59.740 42.308 10.40 0.00 40.63 3.69
514 515 6.120220 CCCTTTAAGGTCAATTCTAACCGAT 58.880 40.000 10.40 0.00 40.63 4.18
515 516 5.013391 ACCCTTTAAGGTCAATTCTAACCGA 59.987 40.000 10.40 0.00 40.63 4.69
516 517 5.250982 ACCCTTTAAGGTCAATTCTAACCG 58.749 41.667 10.40 0.00 40.63 4.44
517 518 6.571731 GCAACCCTTTAAGGTCAATTCTAACC 60.572 42.308 10.40 0.00 40.05 2.85
518 519 6.208797 AGCAACCCTTTAAGGTCAATTCTAAC 59.791 38.462 10.40 0.00 40.05 2.34
519 520 6.311735 AGCAACCCTTTAAGGTCAATTCTAA 58.688 36.000 10.40 0.00 40.05 2.10
520 521 5.887754 AGCAACCCTTTAAGGTCAATTCTA 58.112 37.500 10.40 0.00 40.05 2.10
521 522 4.740902 AGCAACCCTTTAAGGTCAATTCT 58.259 39.130 10.40 0.00 40.05 2.40
522 523 5.125578 CCTAGCAACCCTTTAAGGTCAATTC 59.874 44.000 10.40 0.00 40.05 2.17
523 524 5.016831 CCTAGCAACCCTTTAAGGTCAATT 58.983 41.667 10.40 0.00 40.05 2.32
524 525 4.600062 CCTAGCAACCCTTTAAGGTCAAT 58.400 43.478 10.40 0.00 40.05 2.57
525 526 3.812882 GCCTAGCAACCCTTTAAGGTCAA 60.813 47.826 10.40 0.00 40.05 3.18
526 527 2.290705 GCCTAGCAACCCTTTAAGGTCA 60.291 50.000 10.40 0.00 40.05 4.02
527 528 2.366533 GCCTAGCAACCCTTTAAGGTC 58.633 52.381 10.40 0.00 40.05 3.85
528 529 1.005569 GGCCTAGCAACCCTTTAAGGT 59.994 52.381 10.40 0.00 44.00 3.50
529 530 1.763968 GGCCTAGCAACCCTTTAAGG 58.236 55.000 3.57 3.57 34.30 2.69
530 531 1.065709 TCGGCCTAGCAACCCTTTAAG 60.066 52.381 0.00 0.00 0.00 1.85
531 532 0.985760 TCGGCCTAGCAACCCTTTAA 59.014 50.000 0.00 0.00 0.00 1.52
532 533 0.985760 TTCGGCCTAGCAACCCTTTA 59.014 50.000 0.00 0.00 0.00 1.85
533 534 0.331616 ATTCGGCCTAGCAACCCTTT 59.668 50.000 0.00 0.00 0.00 3.11
534 535 0.394352 CATTCGGCCTAGCAACCCTT 60.394 55.000 0.00 0.00 0.00 3.95
535 536 1.224592 CATTCGGCCTAGCAACCCT 59.775 57.895 0.00 0.00 0.00 4.34
536 537 0.393808 TTCATTCGGCCTAGCAACCC 60.394 55.000 0.00 0.00 0.00 4.11
537 538 1.017387 CTTCATTCGGCCTAGCAACC 58.983 55.000 0.00 0.00 0.00 3.77
538 539 1.017387 CCTTCATTCGGCCTAGCAAC 58.983 55.000 0.00 0.00 0.00 4.17
539 540 0.107214 CCCTTCATTCGGCCTAGCAA 60.107 55.000 0.00 0.00 0.00 3.91
540 541 1.526887 CCCTTCATTCGGCCTAGCA 59.473 57.895 0.00 0.00 0.00 3.49
541 542 1.227973 CCCCTTCATTCGGCCTAGC 60.228 63.158 0.00 0.00 0.00 3.42
542 543 0.179045 CACCCCTTCATTCGGCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
543 544 0.619255 TCACCCCTTCATTCGGCCTA 60.619 55.000 0.00 0.00 0.00 3.93
544 545 1.915078 CTCACCCCTTCATTCGGCCT 61.915 60.000 0.00 0.00 0.00 5.19
545 546 1.452108 CTCACCCCTTCATTCGGCC 60.452 63.158 0.00 0.00 0.00 6.13
546 547 0.462759 CTCTCACCCCTTCATTCGGC 60.463 60.000 0.00 0.00 0.00 5.54
547 548 1.137872 CTCTCTCACCCCTTCATTCGG 59.862 57.143 0.00 0.00 0.00 4.30
548 549 2.103373 TCTCTCTCACCCCTTCATTCG 58.897 52.381 0.00 0.00 0.00 3.34
549 550 2.159170 CGTCTCTCTCACCCCTTCATTC 60.159 54.545 0.00 0.00 0.00 2.67
550 551 1.827969 CGTCTCTCTCACCCCTTCATT 59.172 52.381 0.00 0.00 0.00 2.57
551 552 1.006043 TCGTCTCTCTCACCCCTTCAT 59.994 52.381 0.00 0.00 0.00 2.57
552 553 0.404426 TCGTCTCTCTCACCCCTTCA 59.596 55.000 0.00 0.00 0.00 3.02
553 554 1.407258 CATCGTCTCTCTCACCCCTTC 59.593 57.143 0.00 0.00 0.00 3.46
554 555 1.272760 ACATCGTCTCTCTCACCCCTT 60.273 52.381 0.00 0.00 0.00 3.95
555 556 0.333312 ACATCGTCTCTCTCACCCCT 59.667 55.000 0.00 0.00 0.00 4.79
556 557 0.457851 CACATCGTCTCTCTCACCCC 59.542 60.000 0.00 0.00 0.00 4.95
557 558 0.457851 CCACATCGTCTCTCTCACCC 59.542 60.000 0.00 0.00 0.00 4.61
558 559 1.133407 GACCACATCGTCTCTCTCACC 59.867 57.143 0.00 0.00 0.00 4.02
559 560 2.088423 AGACCACATCGTCTCTCTCAC 58.912 52.381 0.00 0.00 38.83 3.51
560 561 2.087646 CAGACCACATCGTCTCTCTCA 58.912 52.381 0.00 0.00 41.23 3.27
594 596 2.554142 CAAACTCTCTCTGTGTGCACA 58.446 47.619 17.42 17.42 39.32 4.57
602 604 0.326264 CCCCACCCAAACTCTCTCTG 59.674 60.000 0.00 0.00 0.00 3.35
610 612 2.197605 CCAACGTCCCCACCCAAAC 61.198 63.158 0.00 0.00 0.00 2.93
611 613 2.196229 CCAACGTCCCCACCCAAA 59.804 61.111 0.00 0.00 0.00 3.28
612 614 4.589675 GCCAACGTCCCCACCCAA 62.590 66.667 0.00 0.00 0.00 4.12
723 728 1.762957 AGAGAGAGAGAGAGTCCCGAG 59.237 57.143 0.00 0.00 0.00 4.63
726 731 3.456277 AGAAGAGAGAGAGAGAGAGTCCC 59.544 52.174 0.00 0.00 0.00 4.46
727 732 4.080863 ACAGAAGAGAGAGAGAGAGAGTCC 60.081 50.000 0.00 0.00 0.00 3.85
728 733 5.091261 ACAGAAGAGAGAGAGAGAGAGTC 57.909 47.826 0.00 0.00 0.00 3.36
729 734 4.080863 GGACAGAAGAGAGAGAGAGAGAGT 60.081 50.000 0.00 0.00 0.00 3.24
743 751 6.935240 TTTAATGGAGAGAAGGACAGAAGA 57.065 37.500 0.00 0.00 0.00 2.87
745 753 9.838339 GATAATTTAATGGAGAGAAGGACAGAA 57.162 33.333 0.00 0.00 0.00 3.02
807 815 0.519077 GGGTTTTGAAGAGCGAGCTG 59.481 55.000 0.84 0.00 0.00 4.24
823 831 2.046314 AAATAGTGCGCGCTGGGT 60.046 55.556 32.64 15.83 0.00 4.51
845 853 1.002274 AGGAGGTGAGCTAGGTGGG 59.998 63.158 0.00 0.00 0.00 4.61
848 856 1.214424 GAGAGAGGAGGTGAGCTAGGT 59.786 57.143 0.00 0.00 0.00 3.08
851 859 0.913205 ACGAGAGAGGAGGTGAGCTA 59.087 55.000 0.00 0.00 0.00 3.32
1233 1241 3.268103 ATGGTGGTGGAGCCCGTTC 62.268 63.158 0.00 0.00 36.04 3.95
1311 1319 1.148157 GCATGGACGTCTGGTGATCG 61.148 60.000 16.46 0.00 0.00 3.69
1482 1494 8.649973 TGAAACGCACACATACATATACATTA 57.350 30.769 0.00 0.00 0.00 1.90
1621 1635 1.743623 CTGCCACCGCCGTTATTCA 60.744 57.895 0.00 0.00 0.00 2.57
1625 1639 4.752879 GAGCTGCCACCGCCGTTA 62.753 66.667 0.00 0.00 0.00 3.18
2302 2340 2.040178 GCAAAGGGGTCTAGCTAGCTA 58.960 52.381 22.85 22.85 0.00 3.32
2303 2341 0.833949 GCAAAGGGGTCTAGCTAGCT 59.166 55.000 23.12 23.12 0.00 3.32
2304 2342 0.541863 TGCAAAGGGGTCTAGCTAGC 59.458 55.000 16.35 6.62 0.00 3.42
2305 2343 3.350219 TTTGCAAAGGGGTCTAGCTAG 57.650 47.619 15.01 15.01 0.00 3.42
2361 2399 9.685276 TGCAAATATATGGAGAGAGAAAAAGAA 57.315 29.630 0.00 0.00 0.00 2.52
2362 2400 9.857656 ATGCAAATATATGGAGAGAGAAAAAGA 57.142 29.630 0.00 0.00 0.00 2.52
2414 2453 3.562108 AGAACTTGGAAGGGAGGTAGA 57.438 47.619 0.00 0.00 0.00 2.59
2509 2548 9.052080 GCGTTATTTATGAAGTTCTTGAGAAAC 57.948 33.333 4.17 2.32 35.58 2.78
2606 2648 5.620206 TGATTTTTGTAGGAAGCAGAGACA 58.380 37.500 0.00 0.00 0.00 3.41
2679 2721 0.321346 TCGAGCTTCTTGCATGACCA 59.679 50.000 1.02 0.00 45.94 4.02
2741 2783 1.135660 TGCTAACGAGAACGAGCAGAG 60.136 52.381 0.00 0.00 41.80 3.35
2742 2784 0.879090 TGCTAACGAGAACGAGCAGA 59.121 50.000 0.00 0.00 41.80 4.26
2743 2785 0.985549 GTGCTAACGAGAACGAGCAG 59.014 55.000 0.00 0.00 45.17 4.24
2744 2786 0.388134 GGTGCTAACGAGAACGAGCA 60.388 55.000 0.00 0.00 43.44 4.26
2745 2787 0.388134 TGGTGCTAACGAGAACGAGC 60.388 55.000 0.00 0.00 42.66 5.03
2746 2788 1.618861 CTGGTGCTAACGAGAACGAG 58.381 55.000 0.00 0.00 42.66 4.18
2781 2823 2.642996 AAAAGCTGCCGCAACCCAAC 62.643 55.000 2.05 0.00 39.10 3.77
2791 2833 1.172812 AACCACGGAGAAAAGCTGCC 61.173 55.000 0.00 0.00 0.00 4.85
2858 2900 7.149128 CGTCTTTCTTTTTCTCGCCATTAAAAG 60.149 37.037 0.00 0.00 38.38 2.27
3166 3215 2.532715 ACATGGAGGTGGGCAGGT 60.533 61.111 0.00 0.00 0.00 4.00
3173 3222 1.021390 GGAAGACGCACATGGAGGTG 61.021 60.000 0.00 0.00 41.72 4.00
3187 3236 2.668212 CGTGCGCCCAAAGGAAGA 60.668 61.111 4.18 0.00 33.47 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.