Multiple sequence alignment - TraesCS1B01G234500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G234500 chr1B 100.000 3090 0 0 1 3090 420364354 420367443 0.000000e+00 5707.0
1 TraesCS1B01G234500 chr1B 83.838 99 16 0 188 286 434190370 434190272 9.120000e-16 95.3
2 TraesCS1B01G234500 chr1A 94.313 2532 121 11 573 3090 390097780 390100302 0.000000e+00 3856.0
3 TraesCS1B01G234500 chr1A 88.304 171 13 1 400 570 390097532 390097695 6.760000e-47 198.0
4 TraesCS1B01G234500 chr1A 83.178 107 14 3 182 286 401637802 401637906 9.120000e-16 95.3
5 TraesCS1B01G234500 chr1A 95.652 46 2 0 1701 1746 343398411 343398366 1.190000e-09 75.0
6 TraesCS1B01G234500 chr1A 93.750 48 3 0 1698 1745 581594146 581594193 4.270000e-09 73.1
7 TraesCS1B01G234500 chr1A 93.617 47 3 0 1701 1747 384333699 384333745 1.540000e-08 71.3
8 TraesCS1B01G234500 chr1D 95.643 1354 47 8 1745 3090 310250959 310252308 0.000000e+00 2163.0
9 TraesCS1B01G234500 chr1D 92.747 1365 63 11 354 1703 310249614 310250957 0.000000e+00 1940.0
10 TraesCS1B01G234500 chr1D 83.036 112 19 0 175 286 321275719 321275608 5.450000e-18 102.0
11 TraesCS1B01G234500 chr1D 93.617 47 3 0 1701 1747 305588270 305588316 1.540000e-08 71.3
12 TraesCS1B01G234500 chr6B 97.222 288 6 1 1 286 185566466 185566179 1.290000e-133 486.0
13 TraesCS1B01G234500 chr3A 95.105 286 11 2 3 286 510843040 510843324 6.080000e-122 448.0
14 TraesCS1B01G234500 chr4A 87.889 289 29 4 1 285 342429865 342430151 4.940000e-88 335.0
15 TraesCS1B01G234500 chr5B 94.828 58 1 1 2435 2492 482187841 482187786 4.240000e-14 89.8
16 TraesCS1B01G234500 chr3B 82.828 99 17 0 172 270 220789683 220789781 4.240000e-14 89.8
17 TraesCS1B01G234500 chr6D 96.000 50 2 0 2433 2482 147675693 147675644 7.100000e-12 82.4
18 TraesCS1B01G234500 chr4B 94.340 53 3 0 2430 2482 322777846 322777898 7.100000e-12 82.4
19 TraesCS1B01G234500 chr4B 89.062 64 3 3 2430 2492 486280077 486280017 3.300000e-10 76.8
20 TraesCS1B01G234500 chr3D 96.000 50 2 0 2433 2482 555117210 555117161 7.100000e-12 82.4
21 TraesCS1B01G234500 chr3D 94.000 50 3 0 2433 2482 13007408 13007457 3.300000e-10 76.8
22 TraesCS1B01G234500 chr3D 93.617 47 3 0 1706 1752 514267496 514267450 1.540000e-08 71.3
23 TraesCS1B01G234500 chr7B 94.340 53 1 1 2440 2492 712100637 712100687 2.550000e-11 80.5
24 TraesCS1B01G234500 chr2D 94.118 51 2 1 1698 1747 83967037 83967087 3.300000e-10 76.8
25 TraesCS1B01G234500 chr2B 95.745 47 2 0 1700 1746 134045454 134045500 3.300000e-10 76.8
26 TraesCS1B01G234500 chr6A 91.837 49 4 0 1699 1747 427446099 427446051 5.530000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G234500 chr1B 420364354 420367443 3089 False 5707.0 5707 100.0000 1 3090 1 chr1B.!!$F1 3089
1 TraesCS1B01G234500 chr1A 390097532 390100302 2770 False 2027.0 3856 91.3085 400 3090 2 chr1A.!!$F4 2690
2 TraesCS1B01G234500 chr1D 310249614 310252308 2694 False 2051.5 2163 94.1950 354 3090 2 chr1D.!!$F2 2736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.034059 ACCACAGTTCTTGGCGAGAG 59.966 55.0 4.31 0.00 37.69 3.20 F
128 129 0.036164 TAATGAATGATCCCGGCCGG 59.964 55.0 37.99 37.99 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2030 0.322816 ACGCTGCAATGGTGATCCTT 60.323 50.000 0.0 0.0 34.23 3.36 R
2113 2224 3.897141 TTAGTCACAACACTCACCACA 57.103 42.857 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.628846 TCCTCTGCCTAAACCTCAACC 59.371 52.381 0.00 0.00 0.00 3.77
21 22 1.676014 CCTCTGCCTAAACCTCAACCG 60.676 57.143 0.00 0.00 0.00 4.44
22 23 1.002087 CTCTGCCTAAACCTCAACCGT 59.998 52.381 0.00 0.00 0.00 4.83
23 24 1.418637 TCTGCCTAAACCTCAACCGTT 59.581 47.619 0.00 0.00 0.00 4.44
24 25 1.804748 CTGCCTAAACCTCAACCGTTC 59.195 52.381 0.00 0.00 0.00 3.95
25 26 1.418637 TGCCTAAACCTCAACCGTTCT 59.581 47.619 0.00 0.00 0.00 3.01
26 27 1.804748 GCCTAAACCTCAACCGTTCTG 59.195 52.381 0.00 0.00 0.00 3.02
27 28 2.549349 GCCTAAACCTCAACCGTTCTGA 60.549 50.000 0.00 0.00 0.00 3.27
28 29 3.735591 CCTAAACCTCAACCGTTCTGAA 58.264 45.455 0.00 0.00 0.00 3.02
29 30 3.497262 CCTAAACCTCAACCGTTCTGAAC 59.503 47.826 10.48 10.48 0.00 3.18
41 42 2.684001 TTCTGAACGAACACCACAGT 57.316 45.000 0.00 0.00 0.00 3.55
42 43 2.684001 TCTGAACGAACACCACAGTT 57.316 45.000 0.00 0.00 0.00 3.16
43 44 2.546778 TCTGAACGAACACCACAGTTC 58.453 47.619 0.00 0.00 43.39 3.01
44 45 2.167693 TCTGAACGAACACCACAGTTCT 59.832 45.455 8.35 0.00 44.37 3.01
45 46 2.936498 CTGAACGAACACCACAGTTCTT 59.064 45.455 8.35 0.00 44.37 2.52
46 47 2.675844 TGAACGAACACCACAGTTCTTG 59.324 45.455 8.35 0.00 44.37 3.02
47 48 1.663695 ACGAACACCACAGTTCTTGG 58.336 50.000 5.44 0.00 44.37 3.61
48 49 0.307760 CGAACACCACAGTTCTTGGC 59.692 55.000 5.44 0.00 44.37 4.52
49 50 0.307760 GAACACCACAGTTCTTGGCG 59.692 55.000 0.00 0.00 43.46 5.69
50 51 0.107410 AACACCACAGTTCTTGGCGA 60.107 50.000 0.00 0.00 37.69 5.54
51 52 0.532862 ACACCACAGTTCTTGGCGAG 60.533 55.000 0.00 0.00 37.69 5.03
52 53 0.249868 CACCACAGTTCTTGGCGAGA 60.250 55.000 0.00 0.00 37.69 4.04
53 54 0.034059 ACCACAGTTCTTGGCGAGAG 59.966 55.000 4.31 0.00 37.69 3.20
54 55 0.318441 CCACAGTTCTTGGCGAGAGA 59.682 55.000 4.31 0.00 35.37 3.10
55 56 1.671261 CCACAGTTCTTGGCGAGAGAG 60.671 57.143 4.31 1.98 35.37 3.20
56 57 1.270826 CACAGTTCTTGGCGAGAGAGA 59.729 52.381 4.31 0.00 35.37 3.10
57 58 1.543802 ACAGTTCTTGGCGAGAGAGAG 59.456 52.381 4.31 0.00 35.37 3.20
58 59 1.815613 CAGTTCTTGGCGAGAGAGAGA 59.184 52.381 4.31 0.00 35.37 3.10
59 60 2.230025 CAGTTCTTGGCGAGAGAGAGAA 59.770 50.000 4.31 0.00 35.37 2.87
60 61 2.894126 AGTTCTTGGCGAGAGAGAGAAA 59.106 45.455 4.31 0.00 35.37 2.52
61 62 3.513515 AGTTCTTGGCGAGAGAGAGAAAT 59.486 43.478 4.31 0.00 35.37 2.17
62 63 4.020662 AGTTCTTGGCGAGAGAGAGAAATT 60.021 41.667 4.31 0.00 35.37 1.82
63 64 5.186021 AGTTCTTGGCGAGAGAGAGAAATTA 59.814 40.000 4.31 0.00 35.37 1.40
64 65 5.000012 TCTTGGCGAGAGAGAGAAATTAC 58.000 43.478 0.00 0.00 0.00 1.89
65 66 3.422417 TGGCGAGAGAGAGAAATTACG 57.578 47.619 0.00 0.00 0.00 3.18
66 67 2.099263 TGGCGAGAGAGAGAAATTACGG 59.901 50.000 0.00 0.00 0.00 4.02
67 68 2.544069 GGCGAGAGAGAGAAATTACGGG 60.544 54.545 0.00 0.00 0.00 5.28
68 69 2.358267 GCGAGAGAGAGAAATTACGGGA 59.642 50.000 0.00 0.00 0.00 5.14
69 70 3.181489 GCGAGAGAGAGAAATTACGGGAA 60.181 47.826 0.00 0.00 0.00 3.97
70 71 4.602995 CGAGAGAGAGAAATTACGGGAAG 58.397 47.826 0.00 0.00 0.00 3.46
71 72 4.335874 CGAGAGAGAGAAATTACGGGAAGA 59.664 45.833 0.00 0.00 0.00 2.87
72 73 5.163642 CGAGAGAGAGAAATTACGGGAAGAA 60.164 44.000 0.00 0.00 0.00 2.52
73 74 6.215495 AGAGAGAGAAATTACGGGAAGAAG 57.785 41.667 0.00 0.00 0.00 2.85
74 75 5.952947 AGAGAGAGAAATTACGGGAAGAAGA 59.047 40.000 0.00 0.00 0.00 2.87
75 76 6.609616 AGAGAGAGAAATTACGGGAAGAAGAT 59.390 38.462 0.00 0.00 0.00 2.40
76 77 6.578023 AGAGAGAAATTACGGGAAGAAGATG 58.422 40.000 0.00 0.00 0.00 2.90
77 78 5.675538 AGAGAAATTACGGGAAGAAGATGG 58.324 41.667 0.00 0.00 0.00 3.51
78 79 5.425539 AGAGAAATTACGGGAAGAAGATGGA 59.574 40.000 0.00 0.00 0.00 3.41
79 80 5.429130 AGAAATTACGGGAAGAAGATGGAC 58.571 41.667 0.00 0.00 0.00 4.02
80 81 4.837093 AATTACGGGAAGAAGATGGACA 57.163 40.909 0.00 0.00 0.00 4.02
81 82 5.373812 AATTACGGGAAGAAGATGGACAT 57.626 39.130 0.00 0.00 0.00 3.06
82 83 2.698855 ACGGGAAGAAGATGGACATG 57.301 50.000 0.00 0.00 0.00 3.21
83 84 2.187958 ACGGGAAGAAGATGGACATGA 58.812 47.619 0.00 0.00 0.00 3.07
84 85 2.093447 ACGGGAAGAAGATGGACATGAC 60.093 50.000 0.00 0.00 0.00 3.06
85 86 2.093500 CGGGAAGAAGATGGACATGACA 60.093 50.000 0.00 0.00 0.00 3.58
86 87 3.432749 CGGGAAGAAGATGGACATGACAT 60.433 47.826 0.00 3.25 0.00 3.06
87 88 3.881688 GGGAAGAAGATGGACATGACATG 59.118 47.826 14.02 14.02 0.00 3.21
88 89 3.314635 GGAAGAAGATGGACATGACATGC 59.685 47.826 15.49 8.15 0.00 4.06
89 90 2.558378 AGAAGATGGACATGACATGCG 58.442 47.619 15.49 0.00 0.00 4.73
90 91 1.600957 GAAGATGGACATGACATGCGG 59.399 52.381 15.49 0.00 0.00 5.69
91 92 0.832626 AGATGGACATGACATGCGGA 59.167 50.000 15.49 0.00 0.00 5.54
92 93 0.940126 GATGGACATGACATGCGGAC 59.060 55.000 15.49 4.12 0.00 4.79
93 94 0.464373 ATGGACATGACATGCGGACC 60.464 55.000 15.49 13.29 0.00 4.46
94 95 1.819632 GGACATGACATGCGGACCC 60.820 63.158 15.49 5.66 0.00 4.46
95 96 2.125147 ACATGACATGCGGACCCG 60.125 61.111 15.49 3.73 43.09 5.28
96 97 2.125147 CATGACATGCGGACCCGT 60.125 61.111 10.37 0.00 42.09 5.28
97 98 2.125147 ATGACATGCGGACCCGTG 60.125 61.111 10.37 4.06 42.09 4.94
98 99 2.655073 ATGACATGCGGACCCGTGA 61.655 57.895 10.37 0.00 42.09 4.35
99 100 2.047655 GACATGCGGACCCGTGAA 60.048 61.111 10.37 0.00 42.09 3.18
100 101 2.047274 ACATGCGGACCCGTGAAG 60.047 61.111 10.37 1.23 42.09 3.02
101 102 2.047274 CATGCGGACCCGTGAAGT 60.047 61.111 10.37 0.00 42.09 3.01
102 103 2.100631 CATGCGGACCCGTGAAGTC 61.101 63.158 10.37 0.00 42.09 3.01
103 104 2.579657 ATGCGGACCCGTGAAGTCA 61.580 57.895 10.37 0.00 42.09 3.41
104 105 2.432628 GCGGACCCGTGAAGTCAG 60.433 66.667 10.37 0.00 42.09 3.51
105 106 3.048602 CGGACCCGTGAAGTCAGT 58.951 61.111 0.00 0.00 35.89 3.41
106 107 1.372997 CGGACCCGTGAAGTCAGTG 60.373 63.158 0.00 0.00 35.89 3.66
107 108 1.802337 CGGACCCGTGAAGTCAGTGA 61.802 60.000 0.00 0.00 35.89 3.41
108 109 0.038159 GGACCCGTGAAGTCAGTGAG 60.038 60.000 0.00 0.00 35.89 3.51
109 110 0.674534 GACCCGTGAAGTCAGTGAGT 59.325 55.000 0.00 0.00 34.27 3.41
110 111 1.884579 GACCCGTGAAGTCAGTGAGTA 59.115 52.381 0.00 0.00 34.27 2.59
111 112 2.295349 GACCCGTGAAGTCAGTGAGTAA 59.705 50.000 0.00 0.00 34.27 2.24
112 113 2.897969 ACCCGTGAAGTCAGTGAGTAAT 59.102 45.455 0.00 0.00 0.00 1.89
113 114 3.254060 CCCGTGAAGTCAGTGAGTAATG 58.746 50.000 0.00 0.00 0.00 1.90
114 115 3.056821 CCCGTGAAGTCAGTGAGTAATGA 60.057 47.826 0.00 0.00 0.00 2.57
115 116 4.556233 CCGTGAAGTCAGTGAGTAATGAA 58.444 43.478 0.00 0.00 32.03 2.57
116 117 5.171476 CCGTGAAGTCAGTGAGTAATGAAT 58.829 41.667 0.00 0.00 32.03 2.57
117 118 5.062683 CCGTGAAGTCAGTGAGTAATGAATG 59.937 44.000 0.00 0.00 32.03 2.67
118 119 5.863935 CGTGAAGTCAGTGAGTAATGAATGA 59.136 40.000 0.00 0.00 32.03 2.57
119 120 6.533012 CGTGAAGTCAGTGAGTAATGAATGAT 59.467 38.462 0.00 0.00 32.03 2.45
120 121 7.253917 CGTGAAGTCAGTGAGTAATGAATGATC 60.254 40.741 0.00 0.00 32.03 2.92
121 122 7.010923 GTGAAGTCAGTGAGTAATGAATGATCC 59.989 40.741 0.00 0.00 32.03 3.36
122 123 5.923204 AGTCAGTGAGTAATGAATGATCCC 58.077 41.667 0.00 0.00 32.03 3.85
123 124 4.747108 GTCAGTGAGTAATGAATGATCCCG 59.253 45.833 0.00 0.00 32.03 5.14
124 125 4.060900 CAGTGAGTAATGAATGATCCCGG 58.939 47.826 0.00 0.00 0.00 5.73
125 126 2.808543 GTGAGTAATGAATGATCCCGGC 59.191 50.000 0.00 0.00 0.00 6.13
126 127 2.224523 TGAGTAATGAATGATCCCGGCC 60.225 50.000 0.00 0.00 0.00 6.13
127 128 1.156736 GTAATGAATGATCCCGGCCG 58.843 55.000 21.04 21.04 0.00 6.13
128 129 0.036164 TAATGAATGATCCCGGCCGG 59.964 55.000 37.99 37.99 0.00 6.13
138 139 4.235762 CCGGCCGGGATCGTCATT 62.236 66.667 37.42 0.00 38.47 2.57
139 140 2.203015 CGGCCGGGATCGTCATTT 60.203 61.111 20.10 0.00 33.95 2.32
140 141 1.817941 CGGCCGGGATCGTCATTTT 60.818 57.895 20.10 0.00 33.95 1.82
141 142 1.772063 CGGCCGGGATCGTCATTTTC 61.772 60.000 20.10 0.00 33.95 2.29
142 143 1.444917 GGCCGGGATCGTCATTTTCC 61.445 60.000 2.18 0.00 33.95 3.13
143 144 0.463833 GCCGGGATCGTCATTTTCCT 60.464 55.000 2.18 0.00 33.95 3.36
144 145 1.202604 GCCGGGATCGTCATTTTCCTA 60.203 52.381 2.18 0.00 33.95 2.94
145 146 2.755650 CCGGGATCGTCATTTTCCTAG 58.244 52.381 0.00 0.00 33.95 3.02
146 147 2.102588 CCGGGATCGTCATTTTCCTAGT 59.897 50.000 0.00 0.00 33.95 2.57
147 148 3.123804 CGGGATCGTCATTTTCCTAGTG 58.876 50.000 0.00 0.00 0.00 2.74
148 149 3.430374 CGGGATCGTCATTTTCCTAGTGT 60.430 47.826 0.00 0.00 0.00 3.55
149 150 3.871594 GGGATCGTCATTTTCCTAGTGTG 59.128 47.826 0.00 0.00 0.00 3.82
150 151 4.382685 GGGATCGTCATTTTCCTAGTGTGA 60.383 45.833 0.00 0.00 0.00 3.58
151 152 4.567159 GGATCGTCATTTTCCTAGTGTGAC 59.433 45.833 0.00 0.00 36.67 3.67
152 153 4.594123 TCGTCATTTTCCTAGTGTGACA 57.406 40.909 0.00 0.00 39.20 3.58
153 154 4.951254 TCGTCATTTTCCTAGTGTGACAA 58.049 39.130 0.00 0.00 39.20 3.18
154 155 5.361427 TCGTCATTTTCCTAGTGTGACAAA 58.639 37.500 0.00 0.00 39.20 2.83
155 156 5.235616 TCGTCATTTTCCTAGTGTGACAAAC 59.764 40.000 0.00 0.00 39.20 2.93
156 157 5.236478 CGTCATTTTCCTAGTGTGACAAACT 59.764 40.000 3.22 3.22 39.20 2.66
157 158 6.422701 CGTCATTTTCCTAGTGTGACAAACTA 59.577 38.462 5.37 5.37 39.20 2.24
158 159 7.359264 CGTCATTTTCCTAGTGTGACAAACTAG 60.359 40.741 21.63 21.63 44.48 2.57
159 160 7.441458 GTCATTTTCCTAGTGTGACAAACTAGT 59.559 37.037 24.92 8.92 43.73 2.57
160 161 7.656137 TCATTTTCCTAGTGTGACAAACTAGTC 59.344 37.037 24.92 0.00 43.73 2.59
161 162 5.464030 TTCCTAGTGTGACAAACTAGTCC 57.536 43.478 24.92 0.00 43.73 3.85
162 163 4.476297 TCCTAGTGTGACAAACTAGTCCA 58.524 43.478 24.92 10.71 43.73 4.02
163 164 4.523173 TCCTAGTGTGACAAACTAGTCCAG 59.477 45.833 24.92 13.63 43.73 3.86
164 165 4.523173 CCTAGTGTGACAAACTAGTCCAGA 59.477 45.833 24.92 0.00 43.73 3.86
165 166 5.010719 CCTAGTGTGACAAACTAGTCCAGAA 59.989 44.000 24.92 0.00 43.73 3.02
166 167 5.353394 AGTGTGACAAACTAGTCCAGAAA 57.647 39.130 0.00 0.00 37.73 2.52
167 168 5.360591 AGTGTGACAAACTAGTCCAGAAAG 58.639 41.667 0.00 0.00 37.73 2.62
168 169 5.128827 AGTGTGACAAACTAGTCCAGAAAGA 59.871 40.000 0.00 0.00 37.73 2.52
169 170 5.234543 GTGTGACAAACTAGTCCAGAAAGAC 59.765 44.000 0.00 0.00 37.73 3.01
171 172 6.049790 GTGACAAACTAGTCCAGAAAGACTT 58.950 40.000 0.00 0.00 44.83 3.01
172 173 7.147794 TGTGACAAACTAGTCCAGAAAGACTTA 60.148 37.037 0.00 0.00 44.83 2.24
173 174 7.382759 GTGACAAACTAGTCCAGAAAGACTTAG 59.617 40.741 0.00 0.00 44.83 2.18
174 175 6.760291 ACAAACTAGTCCAGAAAGACTTAGG 58.240 40.000 0.00 0.00 44.83 2.69
175 176 6.166982 CAAACTAGTCCAGAAAGACTTAGGG 58.833 44.000 0.00 0.00 44.83 3.53
176 177 5.013258 ACTAGTCCAGAAAGACTTAGGGT 57.987 43.478 0.00 0.00 44.83 4.34
177 178 5.404395 ACTAGTCCAGAAAGACTTAGGGTT 58.596 41.667 0.00 0.00 44.83 4.11
178 179 4.625607 AGTCCAGAAAGACTTAGGGTTG 57.374 45.455 0.00 0.00 44.83 3.77
179 180 4.232091 AGTCCAGAAAGACTTAGGGTTGA 58.768 43.478 0.00 0.00 44.83 3.18
180 181 4.284746 AGTCCAGAAAGACTTAGGGTTGAG 59.715 45.833 0.00 0.00 44.83 3.02
181 182 4.283722 GTCCAGAAAGACTTAGGGTTGAGA 59.716 45.833 0.00 0.00 33.79 3.27
182 183 5.046231 GTCCAGAAAGACTTAGGGTTGAGAT 60.046 44.000 0.00 0.00 33.79 2.75
183 184 6.154706 GTCCAGAAAGACTTAGGGTTGAGATA 59.845 42.308 0.00 0.00 33.79 1.98
184 185 6.381420 TCCAGAAAGACTTAGGGTTGAGATAG 59.619 42.308 0.00 0.00 0.00 2.08
185 186 6.381420 CCAGAAAGACTTAGGGTTGAGATAGA 59.619 42.308 0.00 0.00 0.00 1.98
186 187 7.262048 CAGAAAGACTTAGGGTTGAGATAGAC 58.738 42.308 0.00 0.00 0.00 2.59
187 188 6.381707 AGAAAGACTTAGGGTTGAGATAGACC 59.618 42.308 0.00 0.00 35.14 3.85
188 189 5.208294 AGACTTAGGGTTGAGATAGACCA 57.792 43.478 0.00 0.00 37.68 4.02
189 190 5.205056 AGACTTAGGGTTGAGATAGACCAG 58.795 45.833 0.00 0.00 37.68 4.00
190 191 4.290942 ACTTAGGGTTGAGATAGACCAGG 58.709 47.826 0.00 0.00 37.68 4.45
191 192 4.016479 ACTTAGGGTTGAGATAGACCAGGA 60.016 45.833 0.00 0.00 37.68 3.86
192 193 3.715648 AGGGTTGAGATAGACCAGGAT 57.284 47.619 0.00 0.00 37.68 3.24
193 194 4.014273 AGGGTTGAGATAGACCAGGATT 57.986 45.455 0.00 0.00 37.68 3.01
194 195 5.157770 AGGGTTGAGATAGACCAGGATTA 57.842 43.478 0.00 0.00 37.68 1.75
195 196 5.151454 AGGGTTGAGATAGACCAGGATTAG 58.849 45.833 0.00 0.00 37.68 1.73
196 197 4.902448 GGGTTGAGATAGACCAGGATTAGT 59.098 45.833 0.00 0.00 37.68 2.24
197 198 5.221541 GGGTTGAGATAGACCAGGATTAGTG 60.222 48.000 0.00 0.00 37.68 2.74
198 199 5.598830 GGTTGAGATAGACCAGGATTAGTGA 59.401 44.000 0.00 0.00 35.95 3.41
199 200 6.239176 GGTTGAGATAGACCAGGATTAGTGAG 60.239 46.154 0.00 0.00 35.95 3.51
200 201 6.019656 TGAGATAGACCAGGATTAGTGAGT 57.980 41.667 0.00 0.00 0.00 3.41
201 202 7.150447 TGAGATAGACCAGGATTAGTGAGTA 57.850 40.000 0.00 0.00 0.00 2.59
202 203 7.227873 TGAGATAGACCAGGATTAGTGAGTAG 58.772 42.308 0.00 0.00 0.00 2.57
203 204 7.072581 TGAGATAGACCAGGATTAGTGAGTAGA 59.927 40.741 0.00 0.00 0.00 2.59
204 205 7.458397 AGATAGACCAGGATTAGTGAGTAGAG 58.542 42.308 0.00 0.00 0.00 2.43
205 206 4.798882 AGACCAGGATTAGTGAGTAGAGG 58.201 47.826 0.00 0.00 0.00 3.69
206 207 3.892588 GACCAGGATTAGTGAGTAGAGGG 59.107 52.174 0.00 0.00 0.00 4.30
207 208 3.272551 ACCAGGATTAGTGAGTAGAGGGT 59.727 47.826 0.00 0.00 0.00 4.34
208 209 3.639094 CCAGGATTAGTGAGTAGAGGGTG 59.361 52.174 0.00 0.00 0.00 4.61
209 210 4.282496 CAGGATTAGTGAGTAGAGGGTGT 58.718 47.826 0.00 0.00 0.00 4.16
210 211 4.339814 CAGGATTAGTGAGTAGAGGGTGTC 59.660 50.000 0.00 0.00 0.00 3.67
211 212 4.017407 AGGATTAGTGAGTAGAGGGTGTCA 60.017 45.833 0.00 0.00 0.00 3.58
212 213 4.710375 GGATTAGTGAGTAGAGGGTGTCAA 59.290 45.833 0.00 0.00 0.00 3.18
213 214 5.364157 GGATTAGTGAGTAGAGGGTGTCAAT 59.636 44.000 0.00 0.00 0.00 2.57
214 215 6.127026 GGATTAGTGAGTAGAGGGTGTCAATT 60.127 42.308 0.00 0.00 0.00 2.32
215 216 6.681729 TTAGTGAGTAGAGGGTGTCAATTT 57.318 37.500 0.00 0.00 0.00 1.82
216 217 5.153950 AGTGAGTAGAGGGTGTCAATTTC 57.846 43.478 0.00 0.00 0.00 2.17
217 218 4.593206 AGTGAGTAGAGGGTGTCAATTTCA 59.407 41.667 0.00 0.00 0.00 2.69
218 219 4.932200 GTGAGTAGAGGGTGTCAATTTCAG 59.068 45.833 0.00 0.00 0.00 3.02
219 220 4.020218 TGAGTAGAGGGTGTCAATTTCAGG 60.020 45.833 0.00 0.00 0.00 3.86
220 221 2.887151 AGAGGGTGTCAATTTCAGGG 57.113 50.000 0.00 0.00 0.00 4.45
221 222 2.348472 AGAGGGTGTCAATTTCAGGGA 58.652 47.619 0.00 0.00 0.00 4.20
222 223 2.922283 AGAGGGTGTCAATTTCAGGGAT 59.078 45.455 0.00 0.00 0.00 3.85
223 224 3.334881 AGAGGGTGTCAATTTCAGGGATT 59.665 43.478 0.00 0.00 0.00 3.01
224 225 4.089361 GAGGGTGTCAATTTCAGGGATTT 58.911 43.478 0.00 0.00 0.00 2.17
225 226 3.834231 AGGGTGTCAATTTCAGGGATTTG 59.166 43.478 0.00 0.00 0.00 2.32
226 227 3.831911 GGGTGTCAATTTCAGGGATTTGA 59.168 43.478 0.00 0.00 0.00 2.69
227 228 4.283212 GGGTGTCAATTTCAGGGATTTGAA 59.717 41.667 0.00 0.00 35.38 2.69
228 229 5.473039 GGTGTCAATTTCAGGGATTTGAAG 58.527 41.667 0.00 0.00 38.25 3.02
229 230 5.473039 GTGTCAATTTCAGGGATTTGAAGG 58.527 41.667 0.00 0.00 38.25 3.46
230 231 5.011023 GTGTCAATTTCAGGGATTTGAAGGT 59.989 40.000 0.00 0.00 38.25 3.50
231 232 5.602145 TGTCAATTTCAGGGATTTGAAGGTT 59.398 36.000 0.00 0.00 38.25 3.50
232 233 5.928264 GTCAATTTCAGGGATTTGAAGGTTG 59.072 40.000 8.43 8.43 38.25 3.77
233 234 5.837979 TCAATTTCAGGGATTTGAAGGTTGA 59.162 36.000 11.30 11.30 39.04 3.18
234 235 5.990120 ATTTCAGGGATTTGAAGGTTGAG 57.010 39.130 0.00 0.00 38.25 3.02
235 236 3.439857 TCAGGGATTTGAAGGTTGAGG 57.560 47.619 0.00 0.00 0.00 3.86
236 237 2.716424 TCAGGGATTTGAAGGTTGAGGT 59.284 45.455 0.00 0.00 0.00 3.85
237 238 3.140144 TCAGGGATTTGAAGGTTGAGGTT 59.860 43.478 0.00 0.00 0.00 3.50
238 239 3.897505 CAGGGATTTGAAGGTTGAGGTTT 59.102 43.478 0.00 0.00 0.00 3.27
239 240 3.897505 AGGGATTTGAAGGTTGAGGTTTG 59.102 43.478 0.00 0.00 0.00 2.93
240 241 3.895041 GGGATTTGAAGGTTGAGGTTTGA 59.105 43.478 0.00 0.00 0.00 2.69
241 242 4.528206 GGGATTTGAAGGTTGAGGTTTGAT 59.472 41.667 0.00 0.00 0.00 2.57
242 243 5.012046 GGGATTTGAAGGTTGAGGTTTGATT 59.988 40.000 0.00 0.00 0.00 2.57
243 244 6.159293 GGATTTGAAGGTTGAGGTTTGATTC 58.841 40.000 0.00 0.00 0.00 2.52
244 245 6.015095 GGATTTGAAGGTTGAGGTTTGATTCT 60.015 38.462 0.00 0.00 0.00 2.40
245 246 5.772825 TTGAAGGTTGAGGTTTGATTCTG 57.227 39.130 0.00 0.00 0.00 3.02
246 247 5.047566 TGAAGGTTGAGGTTTGATTCTGA 57.952 39.130 0.00 0.00 0.00 3.27
247 248 4.821805 TGAAGGTTGAGGTTTGATTCTGAC 59.178 41.667 0.00 0.00 0.00 3.51
248 249 3.403038 AGGTTGAGGTTTGATTCTGACG 58.597 45.455 0.00 0.00 0.00 4.35
249 250 3.071023 AGGTTGAGGTTTGATTCTGACGA 59.929 43.478 0.00 0.00 0.00 4.20
250 251 3.433615 GGTTGAGGTTTGATTCTGACGAG 59.566 47.826 0.00 0.00 0.00 4.18
251 252 2.688507 TGAGGTTTGATTCTGACGAGC 58.311 47.619 0.00 0.00 0.00 5.03
252 253 2.003301 GAGGTTTGATTCTGACGAGCC 58.997 52.381 0.00 0.00 0.00 4.70
253 254 1.347707 AGGTTTGATTCTGACGAGCCA 59.652 47.619 0.00 0.00 0.00 4.75
254 255 2.026822 AGGTTTGATTCTGACGAGCCAT 60.027 45.455 0.00 0.00 0.00 4.40
255 256 3.197766 AGGTTTGATTCTGACGAGCCATA 59.802 43.478 0.00 0.00 0.00 2.74
256 257 4.130118 GGTTTGATTCTGACGAGCCATAT 58.870 43.478 0.00 0.00 0.00 1.78
257 258 4.024556 GGTTTGATTCTGACGAGCCATATG 60.025 45.833 0.00 0.00 0.00 1.78
258 259 4.670896 TTGATTCTGACGAGCCATATGA 57.329 40.909 3.65 0.00 0.00 2.15
259 260 4.670896 TGATTCTGACGAGCCATATGAA 57.329 40.909 3.65 0.00 0.00 2.57
260 261 5.219343 TGATTCTGACGAGCCATATGAAT 57.781 39.130 3.65 0.00 0.00 2.57
261 262 5.614308 TGATTCTGACGAGCCATATGAATT 58.386 37.500 3.65 0.00 0.00 2.17
262 263 5.467735 TGATTCTGACGAGCCATATGAATTG 59.532 40.000 3.65 0.00 0.00 2.32
263 264 4.670896 TCTGACGAGCCATATGAATTGA 57.329 40.909 3.65 0.00 0.00 2.57
264 265 5.022282 TCTGACGAGCCATATGAATTGAA 57.978 39.130 3.65 0.00 0.00 2.69
265 266 5.052481 TCTGACGAGCCATATGAATTGAAG 58.948 41.667 3.65 1.17 0.00 3.02
266 267 4.129380 TGACGAGCCATATGAATTGAAGG 58.871 43.478 3.65 0.00 0.00 3.46
267 268 4.130118 GACGAGCCATATGAATTGAAGGT 58.870 43.478 3.65 0.00 0.00 3.50
268 269 4.526970 ACGAGCCATATGAATTGAAGGTT 58.473 39.130 3.65 0.00 0.00 3.50
269 270 4.949856 ACGAGCCATATGAATTGAAGGTTT 59.050 37.500 3.65 0.00 0.00 3.27
270 271 6.119536 ACGAGCCATATGAATTGAAGGTTTA 58.880 36.000 3.65 0.00 0.00 2.01
271 272 6.601613 ACGAGCCATATGAATTGAAGGTTTAA 59.398 34.615 3.65 0.00 0.00 1.52
272 273 7.122055 ACGAGCCATATGAATTGAAGGTTTAAA 59.878 33.333 3.65 0.00 0.00 1.52
273 274 7.973388 CGAGCCATATGAATTGAAGGTTTAAAA 59.027 33.333 3.65 0.00 0.00 1.52
274 275 9.087424 GAGCCATATGAATTGAAGGTTTAAAAC 57.913 33.333 3.65 0.00 0.00 2.43
275 276 8.592809 AGCCATATGAATTGAAGGTTTAAAACA 58.407 29.630 5.94 0.00 0.00 2.83
276 277 8.872845 GCCATATGAATTGAAGGTTTAAAACAG 58.127 33.333 5.94 0.00 0.00 3.16
281 282 9.750125 ATGAATTGAAGGTTTAAAACAGACTTC 57.250 29.630 5.94 8.08 35.96 3.01
282 283 8.744652 TGAATTGAAGGTTTAAAACAGACTTCA 58.255 29.630 5.94 10.25 41.55 3.02
283 284 8.926715 AATTGAAGGTTTAAAACAGACTTCAC 57.073 30.769 5.94 0.00 42.55 3.18
284 285 7.696992 TTGAAGGTTTAAAACAGACTTCACT 57.303 32.000 5.94 0.00 42.55 3.41
285 286 7.316544 TGAAGGTTTAAAACAGACTTCACTC 57.683 36.000 5.94 0.00 39.29 3.51
286 287 7.110155 TGAAGGTTTAAAACAGACTTCACTCT 58.890 34.615 5.94 0.00 39.29 3.24
287 288 7.280205 TGAAGGTTTAAAACAGACTTCACTCTC 59.720 37.037 5.94 0.00 39.29 3.20
288 289 6.650120 AGGTTTAAAACAGACTTCACTCTCA 58.350 36.000 5.94 0.00 0.00 3.27
289 290 7.110155 AGGTTTAAAACAGACTTCACTCTCAA 58.890 34.615 5.94 0.00 0.00 3.02
290 291 7.065923 AGGTTTAAAACAGACTTCACTCTCAAC 59.934 37.037 5.94 0.00 0.00 3.18
291 292 6.583912 TTAAAACAGACTTCACTCTCAACG 57.416 37.500 0.00 0.00 0.00 4.10
292 293 4.386867 AAACAGACTTCACTCTCAACGA 57.613 40.909 0.00 0.00 0.00 3.85
293 294 4.592485 AACAGACTTCACTCTCAACGAT 57.408 40.909 0.00 0.00 0.00 3.73
294 295 4.592485 ACAGACTTCACTCTCAACGATT 57.408 40.909 0.00 0.00 0.00 3.34
295 296 4.551388 ACAGACTTCACTCTCAACGATTC 58.449 43.478 0.00 0.00 0.00 2.52
296 297 3.923461 CAGACTTCACTCTCAACGATTCC 59.077 47.826 0.00 0.00 0.00 3.01
297 298 3.829601 AGACTTCACTCTCAACGATTCCT 59.170 43.478 0.00 0.00 0.00 3.36
298 299 4.282195 AGACTTCACTCTCAACGATTCCTT 59.718 41.667 0.00 0.00 0.00 3.36
299 300 4.561105 ACTTCACTCTCAACGATTCCTTC 58.439 43.478 0.00 0.00 0.00 3.46
311 312 4.910746 CGATTCCTTCGGCAGTATATTG 57.089 45.455 0.00 0.00 44.28 1.90
312 313 3.123621 CGATTCCTTCGGCAGTATATTGC 59.876 47.826 11.56 11.56 44.28 3.56
313 314 3.552132 TTCCTTCGGCAGTATATTGCA 57.448 42.857 20.31 0.00 45.86 4.08
314 315 3.769739 TCCTTCGGCAGTATATTGCAT 57.230 42.857 20.31 0.00 45.86 3.96
315 316 3.664107 TCCTTCGGCAGTATATTGCATC 58.336 45.455 20.31 4.74 45.86 3.91
316 317 3.324846 TCCTTCGGCAGTATATTGCATCT 59.675 43.478 20.31 0.00 45.86 2.90
317 318 3.434641 CCTTCGGCAGTATATTGCATCTG 59.565 47.826 20.31 8.22 45.86 2.90
318 319 3.751479 TCGGCAGTATATTGCATCTGT 57.249 42.857 20.31 0.00 45.86 3.41
319 320 4.864704 TCGGCAGTATATTGCATCTGTA 57.135 40.909 20.31 0.00 45.86 2.74
320 321 5.405935 TCGGCAGTATATTGCATCTGTAT 57.594 39.130 20.31 0.00 45.86 2.29
321 322 5.170748 TCGGCAGTATATTGCATCTGTATG 58.829 41.667 20.31 1.87 45.86 2.39
322 323 4.931601 CGGCAGTATATTGCATCTGTATGT 59.068 41.667 20.31 0.00 45.86 2.29
323 324 5.409520 CGGCAGTATATTGCATCTGTATGTT 59.590 40.000 20.31 0.00 45.86 2.71
324 325 6.605849 GGCAGTATATTGCATCTGTATGTTG 58.394 40.000 20.31 0.00 45.86 3.33
325 326 6.205464 GGCAGTATATTGCATCTGTATGTTGT 59.795 38.462 20.31 0.00 45.86 3.32
326 327 7.387673 GGCAGTATATTGCATCTGTATGTTGTA 59.612 37.037 20.31 0.00 45.86 2.41
327 328 8.438513 GCAGTATATTGCATCTGTATGTTGTAG 58.561 37.037 14.76 0.00 43.53 2.74
328 329 9.696917 CAGTATATTGCATCTGTATGTTGTAGA 57.303 33.333 0.00 0.00 35.38 2.59
329 330 9.698309 AGTATATTGCATCTGTATGTTGTAGAC 57.302 33.333 0.00 0.00 35.38 2.59
330 331 9.476202 GTATATTGCATCTGTATGTTGTAGACA 57.524 33.333 0.00 0.00 43.71 3.41
338 339 5.624509 TCTGTATGTTGTAGACATGGACAGC 60.625 44.000 13.39 1.21 46.01 4.40
339 340 7.756483 TCTGTATGTTGTAGACATGGACAGCT 61.756 42.308 13.39 0.00 46.01 4.24
340 341 3.319137 TGTTGTAGACATGGACAGCTC 57.681 47.619 0.00 0.00 32.00 4.09
341 342 2.899900 TGTTGTAGACATGGACAGCTCT 59.100 45.455 0.00 0.00 32.00 4.09
342 343 3.257393 GTTGTAGACATGGACAGCTCTG 58.743 50.000 0.00 0.00 0.00 3.35
343 344 5.777321 TGTTGTAGACATGGACAGCTCTGT 61.777 45.833 1.62 1.62 38.95 3.41
344 345 3.697166 TGTAGACATGGACAGCTCTGTA 58.303 45.455 2.07 0.00 45.05 2.74
345 346 4.281657 TGTAGACATGGACAGCTCTGTAT 58.718 43.478 2.07 0.00 45.05 2.29
346 347 5.445964 TGTAGACATGGACAGCTCTGTATA 58.554 41.667 2.07 0.00 45.05 1.47
347 348 6.071320 TGTAGACATGGACAGCTCTGTATAT 58.929 40.000 2.07 0.00 45.05 0.86
348 349 5.465532 AGACATGGACAGCTCTGTATATG 57.534 43.478 17.25 17.25 45.05 1.78
349 350 3.993081 GACATGGACAGCTCTGTATATGC 59.007 47.826 18.12 11.52 45.05 3.14
350 351 3.645212 ACATGGACAGCTCTGTATATGCT 59.355 43.478 18.12 8.90 45.05 3.79
351 352 4.835056 ACATGGACAGCTCTGTATATGCTA 59.165 41.667 18.12 1.79 45.05 3.49
352 353 5.305386 ACATGGACAGCTCTGTATATGCTAA 59.695 40.000 18.12 0.00 45.05 3.09
375 376 2.401583 TATATGCTAATGGCGGCTGG 57.598 50.000 11.43 0.00 45.43 4.85
381 382 1.681264 GCTAATGGCGGCTGGTAAAAT 59.319 47.619 11.43 0.00 0.00 1.82
411 412 2.808933 CGGGGCTTGACTTTCTGTTACA 60.809 50.000 0.00 0.00 0.00 2.41
465 466 2.647529 TATCAAGTTGCGCTCTTCGA 57.352 45.000 9.73 12.94 41.67 3.71
466 467 1.795768 ATCAAGTTGCGCTCTTCGAA 58.204 45.000 9.73 0.00 41.67 3.71
517 518 0.841289 TGGAGGGGAACGTTGACTTT 59.159 50.000 5.00 0.00 0.00 2.66
537 538 1.739466 TCGTGATGAAGAATGGCTTGC 59.261 47.619 0.00 0.00 36.83 4.01
570 653 3.082548 TCGCCTGCCTAGATACATACTC 58.917 50.000 0.00 0.00 0.00 2.59
571 654 2.164624 CGCCTGCCTAGATACATACTCC 59.835 54.545 0.00 0.00 0.00 3.85
588 671 2.364970 ACTCCACATCTCAGCTATCAGC 59.635 50.000 0.00 0.00 42.84 4.26
599 682 0.246086 GCTATCAGCCGCTCATAGCT 59.754 55.000 24.50 0.00 41.21 3.32
760 845 1.288439 CATCAGGCCGGAGATCGAG 59.712 63.158 12.27 0.00 42.43 4.04
901 986 1.492993 GGGGCTTCTTCCAGGTCTGT 61.493 60.000 0.00 0.00 0.00 3.41
909 994 4.974645 TCTTCCAGGTCTGTAACAACAT 57.025 40.909 0.00 0.00 0.00 2.71
910 995 4.894784 TCTTCCAGGTCTGTAACAACATC 58.105 43.478 0.00 0.00 0.00 3.06
911 996 4.346709 TCTTCCAGGTCTGTAACAACATCA 59.653 41.667 0.00 0.00 0.00 3.07
912 997 4.908601 TCCAGGTCTGTAACAACATCAT 57.091 40.909 0.00 0.00 0.00 2.45
913 998 5.241403 TCCAGGTCTGTAACAACATCATT 57.759 39.130 0.00 0.00 0.00 2.57
945 1035 1.944032 TCATGTCATGTCATCAGGCG 58.056 50.000 12.54 0.00 0.00 5.52
948 1042 2.202919 TCATGTCATCAGGCGGCG 60.203 61.111 0.51 0.51 0.00 6.46
964 1058 1.090052 GGCGGAGAAATCGTTGGAGG 61.090 60.000 0.00 0.00 0.00 4.30
1003 1101 2.249557 CTGCAGCTCGTGAACCATGC 62.250 60.000 0.00 0.00 0.00 4.06
1137 1235 0.679505 CCACCACTTCGTCTTCTCCA 59.320 55.000 0.00 0.00 0.00 3.86
1161 1259 1.376553 GCAGAAGCTGGACTGGGTC 60.377 63.158 14.59 0.00 37.91 4.46
1218 1316 2.204059 AGCTTGGACCTCTGGCCT 60.204 61.111 3.32 0.00 0.00 5.19
1253 1351 4.510038 CCTTCAGGTGAAAGTGAAATGG 57.490 45.455 0.00 0.00 32.36 3.16
1256 1354 5.163416 CCTTCAGGTGAAAGTGAAATGGTTT 60.163 40.000 0.00 0.00 32.36 3.27
1260 1358 5.979517 CAGGTGAAAGTGAAATGGTTTTCTC 59.020 40.000 0.75 0.00 41.54 2.87
1306 1408 1.421268 AGCTTCAGGTGACATGAACCA 59.579 47.619 19.82 4.55 40.40 3.67
1318 1420 6.272318 GTGACATGAACCAGAATGTTTCAAA 58.728 36.000 0.00 0.00 37.15 2.69
1639 1744 0.394352 GGGAATGGTTCTCCGTGCAT 60.394 55.000 0.00 0.00 36.30 3.96
1642 1747 1.647545 AATGGTTCTCCGTGCATGCG 61.648 55.000 14.09 0.00 36.30 4.73
1698 1803 1.625818 CCTTGAGGTGTGTTCCTAGCT 59.374 52.381 0.00 0.00 38.02 3.32
1704 1809 4.015084 GAGGTGTGTTCCTAGCTAGTACA 58.985 47.826 19.31 18.21 38.02 2.90
1709 1814 3.380954 GTGTTCCTAGCTAGTACACCCTC 59.619 52.174 28.86 15.17 34.02 4.30
1716 1821 0.737219 CTAGTACACCCTCCGTTCCG 59.263 60.000 0.00 0.00 0.00 4.30
1735 1840 6.443792 GTTCCGTAATTCTTGTCATGGTTTT 58.556 36.000 0.00 0.00 0.00 2.43
1764 1869 8.256611 TCAAATTAGTATCTGCTCTGTTTGAC 57.743 34.615 0.00 0.00 31.52 3.18
1782 1887 6.603237 TTTGACCTGCAAATAGTATGATCG 57.397 37.500 0.00 0.00 41.37 3.69
1792 1897 6.018751 GCAAATAGTATGATCGCTTCAAGTCA 60.019 38.462 0.00 0.00 38.03 3.41
1866 1975 5.464168 CATTGGTTTCAAACAGATCCTCAC 58.536 41.667 1.93 0.00 36.36 3.51
2041 2150 4.993705 TGACTTCACCAAGGGATACTTT 57.006 40.909 0.00 0.00 37.29 2.66
2113 2224 4.774124 CATATTGATGGTCACTGGTCAGT 58.226 43.478 0.00 0.00 43.61 3.41
2126 2237 1.299541 GGTCAGTGTGGTGAGTGTTG 58.700 55.000 0.00 0.00 0.00 3.33
2130 2241 1.665679 CAGTGTGGTGAGTGTTGTGAC 59.334 52.381 0.00 0.00 0.00 3.67
2162 2273 9.886132 CACTTGGTTTAATACTACTCCTATTGT 57.114 33.333 0.00 0.00 0.00 2.71
2174 2285 5.632034 ACTCCTATTGTTTCCCTATGTCC 57.368 43.478 0.00 0.00 0.00 4.02
2226 2337 4.763073 TGTGCAGTCTTCTCATAGAATGG 58.237 43.478 0.00 0.00 39.83 3.16
2231 2342 6.716628 TGCAGTCTTCTCATAGAATGGTTTTT 59.283 34.615 0.00 0.00 39.83 1.94
2448 2559 3.017442 TCTGTTGTGATCTACTCCCTCG 58.983 50.000 0.00 0.00 0.00 4.63
2569 2681 4.826274 AGGCTAAGTGCAGAAGAATACA 57.174 40.909 0.00 0.00 45.15 2.29
2682 2794 7.823799 TCAATCATAGACAGCAATACAGAAACA 59.176 33.333 0.00 0.00 0.00 2.83
2845 2957 1.202348 GGCAAATAAGTGGTCACAGGC 59.798 52.381 3.82 0.00 0.00 4.85
2853 2965 2.262915 GGTCACAGGCTCTCCACG 59.737 66.667 0.00 0.00 33.74 4.94
3001 3113 3.161067 CTCAGACTTCTTCTCACCCTCA 58.839 50.000 0.00 0.00 28.96 3.86
3056 3168 3.624707 GCCCCATCATCACTAACCAAAGA 60.625 47.826 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.628846 GGTTGAGGTTTAGGCAGAGGA 59.371 52.381 0.00 0.00 0.00 3.71
1 2 1.676014 CGGTTGAGGTTTAGGCAGAGG 60.676 57.143 0.00 0.00 0.00 3.69
2 3 1.002087 ACGGTTGAGGTTTAGGCAGAG 59.998 52.381 0.00 0.00 0.00 3.35
3 4 1.053424 ACGGTTGAGGTTTAGGCAGA 58.947 50.000 0.00 0.00 0.00 4.26
4 5 1.804748 GAACGGTTGAGGTTTAGGCAG 59.195 52.381 0.00 0.00 0.00 4.85
5 6 1.418637 AGAACGGTTGAGGTTTAGGCA 59.581 47.619 0.00 0.00 0.00 4.75
6 7 1.804748 CAGAACGGTTGAGGTTTAGGC 59.195 52.381 0.00 0.00 0.00 3.93
7 8 3.396260 TCAGAACGGTTGAGGTTTAGG 57.604 47.619 0.00 0.00 0.00 2.69
8 9 4.727235 GTTCAGAACGGTTGAGGTTTAG 57.273 45.455 0.00 0.00 0.00 1.85
22 23 2.684001 ACTGTGGTGTTCGTTCAGAA 57.316 45.000 0.00 0.00 36.31 3.02
23 24 2.546778 GAACTGTGGTGTTCGTTCAGA 58.453 47.619 0.00 0.00 37.24 3.27
30 31 0.307760 CGCCAAGAACTGTGGTGTTC 59.692 55.000 0.00 0.00 44.67 3.18
31 32 0.107410 TCGCCAAGAACTGTGGTGTT 60.107 50.000 4.09 0.00 45.22 3.32
32 33 0.532862 CTCGCCAAGAACTGTGGTGT 60.533 55.000 4.09 0.00 45.22 4.16
33 34 0.249868 TCTCGCCAAGAACTGTGGTG 60.250 55.000 0.00 0.00 46.16 4.17
34 35 0.034059 CTCTCGCCAAGAACTGTGGT 59.966 55.000 0.00 0.00 38.50 4.16
35 36 0.318441 TCTCTCGCCAAGAACTGTGG 59.682 55.000 0.00 0.00 39.33 4.17
36 37 1.270826 TCTCTCTCGCCAAGAACTGTG 59.729 52.381 0.00 0.00 32.23 3.66
37 38 1.543802 CTCTCTCTCGCCAAGAACTGT 59.456 52.381 0.00 0.00 32.23 3.55
38 39 1.815613 TCTCTCTCTCGCCAAGAACTG 59.184 52.381 0.00 0.00 32.23 3.16
39 40 2.208132 TCTCTCTCTCGCCAAGAACT 57.792 50.000 0.00 0.00 32.23 3.01
40 41 3.305398 TTTCTCTCTCTCGCCAAGAAC 57.695 47.619 0.00 0.00 32.23 3.01
41 42 4.543590 AATTTCTCTCTCTCGCCAAGAA 57.456 40.909 0.00 0.00 32.23 2.52
42 43 4.438880 CGTAATTTCTCTCTCTCGCCAAGA 60.439 45.833 0.00 0.00 0.00 3.02
43 44 3.794028 CGTAATTTCTCTCTCTCGCCAAG 59.206 47.826 0.00 0.00 0.00 3.61
44 45 3.428999 CCGTAATTTCTCTCTCTCGCCAA 60.429 47.826 0.00 0.00 0.00 4.52
45 46 2.099263 CCGTAATTTCTCTCTCTCGCCA 59.901 50.000 0.00 0.00 0.00 5.69
46 47 2.544069 CCCGTAATTTCTCTCTCTCGCC 60.544 54.545 0.00 0.00 0.00 5.54
47 48 2.358267 TCCCGTAATTTCTCTCTCTCGC 59.642 50.000 0.00 0.00 0.00 5.03
48 49 4.335874 TCTTCCCGTAATTTCTCTCTCTCG 59.664 45.833 0.00 0.00 0.00 4.04
49 50 5.838531 TCTTCCCGTAATTTCTCTCTCTC 57.161 43.478 0.00 0.00 0.00 3.20
50 51 5.952947 TCTTCTTCCCGTAATTTCTCTCTCT 59.047 40.000 0.00 0.00 0.00 3.10
51 52 6.210287 TCTTCTTCCCGTAATTTCTCTCTC 57.790 41.667 0.00 0.00 0.00 3.20
52 53 6.407525 CCATCTTCTTCCCGTAATTTCTCTCT 60.408 42.308 0.00 0.00 0.00 3.10
53 54 5.755861 CCATCTTCTTCCCGTAATTTCTCTC 59.244 44.000 0.00 0.00 0.00 3.20
54 55 5.425539 TCCATCTTCTTCCCGTAATTTCTCT 59.574 40.000 0.00 0.00 0.00 3.10
55 56 5.524281 GTCCATCTTCTTCCCGTAATTTCTC 59.476 44.000 0.00 0.00 0.00 2.87
56 57 5.045869 TGTCCATCTTCTTCCCGTAATTTCT 60.046 40.000 0.00 0.00 0.00 2.52
57 58 5.183228 TGTCCATCTTCTTCCCGTAATTTC 58.817 41.667 0.00 0.00 0.00 2.17
58 59 5.174037 TGTCCATCTTCTTCCCGTAATTT 57.826 39.130 0.00 0.00 0.00 1.82
59 60 4.837093 TGTCCATCTTCTTCCCGTAATT 57.163 40.909 0.00 0.00 0.00 1.40
60 61 4.408921 TCATGTCCATCTTCTTCCCGTAAT 59.591 41.667 0.00 0.00 0.00 1.89
61 62 3.772572 TCATGTCCATCTTCTTCCCGTAA 59.227 43.478 0.00 0.00 0.00 3.18
62 63 3.132289 GTCATGTCCATCTTCTTCCCGTA 59.868 47.826 0.00 0.00 0.00 4.02
63 64 2.093447 GTCATGTCCATCTTCTTCCCGT 60.093 50.000 0.00 0.00 0.00 5.28
64 65 2.093500 TGTCATGTCCATCTTCTTCCCG 60.093 50.000 0.00 0.00 0.00 5.14
65 66 3.634397 TGTCATGTCCATCTTCTTCCC 57.366 47.619 0.00 0.00 0.00 3.97
66 67 3.314635 GCATGTCATGTCCATCTTCTTCC 59.685 47.826 14.26 0.00 0.00 3.46
67 68 3.002042 CGCATGTCATGTCCATCTTCTTC 59.998 47.826 14.26 0.00 0.00 2.87
68 69 2.941064 CGCATGTCATGTCCATCTTCTT 59.059 45.455 14.26 0.00 0.00 2.52
69 70 2.558378 CGCATGTCATGTCCATCTTCT 58.442 47.619 14.26 0.00 0.00 2.85
70 71 1.600957 CCGCATGTCATGTCCATCTTC 59.399 52.381 14.26 0.00 0.00 2.87
71 72 1.210234 TCCGCATGTCATGTCCATCTT 59.790 47.619 14.26 0.00 0.00 2.40
72 73 0.832626 TCCGCATGTCATGTCCATCT 59.167 50.000 14.26 0.00 0.00 2.90
73 74 0.940126 GTCCGCATGTCATGTCCATC 59.060 55.000 14.26 0.00 0.00 3.51
74 75 0.464373 GGTCCGCATGTCATGTCCAT 60.464 55.000 14.26 0.00 0.00 3.41
75 76 1.078497 GGTCCGCATGTCATGTCCA 60.078 57.895 14.26 0.00 0.00 4.02
76 77 1.819632 GGGTCCGCATGTCATGTCC 60.820 63.158 14.26 10.99 0.00 4.02
77 78 2.173669 CGGGTCCGCATGTCATGTC 61.174 63.158 14.26 6.02 0.00 3.06
78 79 2.125147 CGGGTCCGCATGTCATGT 60.125 61.111 14.26 0.00 0.00 3.21
79 80 2.125147 ACGGGTCCGCATGTCATG 60.125 61.111 8.56 8.56 44.19 3.07
80 81 2.125147 CACGGGTCCGCATGTCAT 60.125 61.111 9.55 0.00 44.19 3.06
81 82 2.779951 CTTCACGGGTCCGCATGTCA 62.780 60.000 9.55 0.00 44.19 3.58
82 83 2.047655 TTCACGGGTCCGCATGTC 60.048 61.111 9.55 0.00 44.19 3.06
83 84 2.047274 CTTCACGGGTCCGCATGT 60.047 61.111 9.55 0.00 44.19 3.21
84 85 2.047274 ACTTCACGGGTCCGCATG 60.047 61.111 9.55 1.52 44.19 4.06
85 86 2.264794 GACTTCACGGGTCCGCAT 59.735 61.111 9.55 0.00 44.19 4.73
86 87 3.220999 CTGACTTCACGGGTCCGCA 62.221 63.158 9.55 0.00 44.19 5.69
87 88 2.432628 CTGACTTCACGGGTCCGC 60.433 66.667 9.55 0.00 44.19 5.54
88 89 1.372997 CACTGACTTCACGGGTCCG 60.373 63.158 7.97 7.97 46.03 4.79
89 90 0.038159 CTCACTGACTTCACGGGTCC 60.038 60.000 0.00 0.00 33.22 4.46
90 91 0.674534 ACTCACTGACTTCACGGGTC 59.325 55.000 0.00 0.00 0.00 4.46
91 92 1.991121 TACTCACTGACTTCACGGGT 58.009 50.000 0.00 0.00 0.00 5.28
92 93 3.056821 TCATTACTCACTGACTTCACGGG 60.057 47.826 0.00 0.00 0.00 5.28
93 94 4.174411 TCATTACTCACTGACTTCACGG 57.826 45.455 0.00 0.00 0.00 4.94
94 95 5.863935 TCATTCATTACTCACTGACTTCACG 59.136 40.000 0.00 0.00 0.00 4.35
95 96 7.010923 GGATCATTCATTACTCACTGACTTCAC 59.989 40.741 0.00 0.00 0.00 3.18
96 97 7.044181 GGATCATTCATTACTCACTGACTTCA 58.956 38.462 0.00 0.00 0.00 3.02
97 98 6.481644 GGGATCATTCATTACTCACTGACTTC 59.518 42.308 0.00 0.00 0.00 3.01
98 99 6.352516 GGGATCATTCATTACTCACTGACTT 58.647 40.000 0.00 0.00 0.00 3.01
99 100 5.452496 CGGGATCATTCATTACTCACTGACT 60.452 44.000 0.00 0.00 0.00 3.41
100 101 4.747108 CGGGATCATTCATTACTCACTGAC 59.253 45.833 0.00 0.00 0.00 3.51
101 102 4.202253 CCGGGATCATTCATTACTCACTGA 60.202 45.833 0.00 0.00 0.00 3.41
102 103 4.060900 CCGGGATCATTCATTACTCACTG 58.939 47.826 0.00 0.00 0.00 3.66
103 104 3.495100 GCCGGGATCATTCATTACTCACT 60.495 47.826 2.18 0.00 0.00 3.41
104 105 2.808543 GCCGGGATCATTCATTACTCAC 59.191 50.000 2.18 0.00 0.00 3.51
105 106 2.224523 GGCCGGGATCATTCATTACTCA 60.225 50.000 2.18 0.00 0.00 3.41
106 107 2.427506 GGCCGGGATCATTCATTACTC 58.572 52.381 2.18 0.00 0.00 2.59
107 108 1.270839 CGGCCGGGATCATTCATTACT 60.271 52.381 20.10 0.00 0.00 2.24
108 109 1.156736 CGGCCGGGATCATTCATTAC 58.843 55.000 20.10 0.00 0.00 1.89
109 110 0.036164 CCGGCCGGGATCATTCATTA 59.964 55.000 37.42 0.00 38.47 1.90
110 111 1.228245 CCGGCCGGGATCATTCATT 60.228 57.895 37.42 0.00 38.47 2.57
111 112 2.431683 CCGGCCGGGATCATTCAT 59.568 61.111 37.42 0.00 38.47 2.57
121 122 3.750373 AAATGACGATCCCGGCCGG 62.750 63.158 37.99 37.99 44.97 6.13
122 123 1.772063 GAAAATGACGATCCCGGCCG 61.772 60.000 21.04 21.04 44.97 6.13
123 124 1.444917 GGAAAATGACGATCCCGGCC 61.445 60.000 0.00 0.00 44.97 6.13
124 125 0.463833 AGGAAAATGACGATCCCGGC 60.464 55.000 0.00 0.00 46.00 6.13
125 126 2.102588 ACTAGGAAAATGACGATCCCGG 59.897 50.000 0.00 0.00 40.78 5.73
126 127 3.123804 CACTAGGAAAATGACGATCCCG 58.876 50.000 0.00 0.00 42.50 5.14
127 128 3.871594 CACACTAGGAAAATGACGATCCC 59.128 47.826 0.00 0.00 33.55 3.85
128 129 4.567159 GTCACACTAGGAAAATGACGATCC 59.433 45.833 0.00 0.00 31.19 3.36
129 130 5.168569 TGTCACACTAGGAAAATGACGATC 58.831 41.667 0.00 0.00 42.09 3.69
130 131 5.147330 TGTCACACTAGGAAAATGACGAT 57.853 39.130 0.00 0.00 42.09 3.73
131 132 4.594123 TGTCACACTAGGAAAATGACGA 57.406 40.909 0.00 0.00 42.09 4.20
132 133 5.236478 AGTTTGTCACACTAGGAAAATGACG 59.764 40.000 0.00 0.00 42.09 4.35
133 134 6.619801 AGTTTGTCACACTAGGAAAATGAC 57.380 37.500 0.00 1.29 40.08 3.06
134 135 7.506114 ACTAGTTTGTCACACTAGGAAAATGA 58.494 34.615 23.68 0.00 45.62 2.57
135 136 7.095187 GGACTAGTTTGTCACACTAGGAAAATG 60.095 40.741 23.68 4.97 45.62 2.32
136 137 6.935208 GGACTAGTTTGTCACACTAGGAAAAT 59.065 38.462 23.68 8.07 45.62 1.82
137 138 6.126997 TGGACTAGTTTGTCACACTAGGAAAA 60.127 38.462 23.68 9.03 45.62 2.29
138 139 5.364446 TGGACTAGTTTGTCACACTAGGAAA 59.636 40.000 23.68 10.38 45.62 3.13
139 140 4.897076 TGGACTAGTTTGTCACACTAGGAA 59.103 41.667 23.68 10.66 45.62 3.36
140 141 4.476297 TGGACTAGTTTGTCACACTAGGA 58.524 43.478 23.68 9.67 45.62 2.94
141 142 4.523173 TCTGGACTAGTTTGTCACACTAGG 59.477 45.833 23.68 10.77 45.62 3.02
142 143 5.707242 TCTGGACTAGTTTGTCACACTAG 57.293 43.478 20.04 20.04 46.42 2.57
143 144 6.322969 TCTTTCTGGACTAGTTTGTCACACTA 59.677 38.462 0.00 0.00 38.61 2.74
144 145 5.128827 TCTTTCTGGACTAGTTTGTCACACT 59.871 40.000 0.00 0.00 38.61 3.55
145 146 5.234543 GTCTTTCTGGACTAGTTTGTCACAC 59.765 44.000 0.00 0.00 38.61 3.82
146 147 5.128827 AGTCTTTCTGGACTAGTTTGTCACA 59.871 40.000 0.00 0.00 43.76 3.58
147 148 5.602628 AGTCTTTCTGGACTAGTTTGTCAC 58.397 41.667 0.00 0.00 43.76 3.67
148 149 5.871396 AGTCTTTCTGGACTAGTTTGTCA 57.129 39.130 0.00 0.00 43.76 3.58
149 150 6.869388 CCTAAGTCTTTCTGGACTAGTTTGTC 59.131 42.308 0.00 0.00 44.67 3.18
150 151 6.239629 CCCTAAGTCTTTCTGGACTAGTTTGT 60.240 42.308 0.00 0.00 44.67 2.83
151 152 6.166982 CCCTAAGTCTTTCTGGACTAGTTTG 58.833 44.000 0.00 0.00 44.67 2.93
152 153 5.845065 ACCCTAAGTCTTTCTGGACTAGTTT 59.155 40.000 0.00 0.00 44.67 2.66
153 154 5.404395 ACCCTAAGTCTTTCTGGACTAGTT 58.596 41.667 0.00 0.00 44.67 2.24
154 155 5.013258 ACCCTAAGTCTTTCTGGACTAGT 57.987 43.478 0.00 0.00 44.67 2.57
155 156 5.480772 TCAACCCTAAGTCTTTCTGGACTAG 59.519 44.000 0.00 0.00 44.67 2.57
156 157 5.399991 TCAACCCTAAGTCTTTCTGGACTA 58.600 41.667 0.00 0.00 44.67 2.59
158 159 4.283722 TCTCAACCCTAAGTCTTTCTGGAC 59.716 45.833 0.00 0.00 36.56 4.02
159 160 4.489737 TCTCAACCCTAAGTCTTTCTGGA 58.510 43.478 0.00 0.00 0.00 3.86
160 161 4.891992 TCTCAACCCTAAGTCTTTCTGG 57.108 45.455 0.00 0.00 0.00 3.86
161 162 7.262048 GTCTATCTCAACCCTAAGTCTTTCTG 58.738 42.308 0.00 0.00 0.00 3.02
162 163 6.381707 GGTCTATCTCAACCCTAAGTCTTTCT 59.618 42.308 0.00 0.00 0.00 2.52
163 164 6.154706 TGGTCTATCTCAACCCTAAGTCTTTC 59.845 42.308 0.00 0.00 34.47 2.62
164 165 6.023603 TGGTCTATCTCAACCCTAAGTCTTT 58.976 40.000 0.00 0.00 34.47 2.52
165 166 5.590818 TGGTCTATCTCAACCCTAAGTCTT 58.409 41.667 0.00 0.00 34.47 3.01
166 167 5.205056 CTGGTCTATCTCAACCCTAAGTCT 58.795 45.833 0.00 0.00 34.47 3.24
167 168 4.342665 CCTGGTCTATCTCAACCCTAAGTC 59.657 50.000 0.00 0.00 34.47 3.01
168 169 4.016479 TCCTGGTCTATCTCAACCCTAAGT 60.016 45.833 0.00 0.00 34.47 2.24
169 170 4.547671 TCCTGGTCTATCTCAACCCTAAG 58.452 47.826 0.00 0.00 34.47 2.18
170 171 4.620086 TCCTGGTCTATCTCAACCCTAA 57.380 45.455 0.00 0.00 34.47 2.69
171 172 4.834406 ATCCTGGTCTATCTCAACCCTA 57.166 45.455 0.00 0.00 34.47 3.53
172 173 3.715648 ATCCTGGTCTATCTCAACCCT 57.284 47.619 0.00 0.00 34.47 4.34
173 174 4.902448 ACTAATCCTGGTCTATCTCAACCC 59.098 45.833 0.00 0.00 34.47 4.11
174 175 5.598830 TCACTAATCCTGGTCTATCTCAACC 59.401 44.000 0.00 0.00 36.03 3.77
175 176 6.322712 ACTCACTAATCCTGGTCTATCTCAAC 59.677 42.308 0.00 0.00 0.00 3.18
176 177 6.436027 ACTCACTAATCCTGGTCTATCTCAA 58.564 40.000 0.00 0.00 0.00 3.02
177 178 6.019656 ACTCACTAATCCTGGTCTATCTCA 57.980 41.667 0.00 0.00 0.00 3.27
178 179 7.455058 TCTACTCACTAATCCTGGTCTATCTC 58.545 42.308 0.00 0.00 0.00 2.75
179 180 7.395525 TCTACTCACTAATCCTGGTCTATCT 57.604 40.000 0.00 0.00 0.00 1.98
180 181 6.657541 CCTCTACTCACTAATCCTGGTCTATC 59.342 46.154 0.00 0.00 0.00 2.08
181 182 6.468066 CCCTCTACTCACTAATCCTGGTCTAT 60.468 46.154 0.00 0.00 0.00 1.98
182 183 5.163077 CCCTCTACTCACTAATCCTGGTCTA 60.163 48.000 0.00 0.00 0.00 2.59
183 184 4.386986 CCCTCTACTCACTAATCCTGGTCT 60.387 50.000 0.00 0.00 0.00 3.85
184 185 3.892588 CCCTCTACTCACTAATCCTGGTC 59.107 52.174 0.00 0.00 0.00 4.02
185 186 3.272551 ACCCTCTACTCACTAATCCTGGT 59.727 47.826 0.00 0.00 0.00 4.00
186 187 3.639094 CACCCTCTACTCACTAATCCTGG 59.361 52.174 0.00 0.00 0.00 4.45
187 188 4.282496 ACACCCTCTACTCACTAATCCTG 58.718 47.826 0.00 0.00 0.00 3.86
188 189 4.017407 TGACACCCTCTACTCACTAATCCT 60.017 45.833 0.00 0.00 0.00 3.24
189 190 4.279145 TGACACCCTCTACTCACTAATCC 58.721 47.826 0.00 0.00 0.00 3.01
190 191 5.916661 TTGACACCCTCTACTCACTAATC 57.083 43.478 0.00 0.00 0.00 1.75
191 192 6.875972 AATTGACACCCTCTACTCACTAAT 57.124 37.500 0.00 0.00 0.00 1.73
192 193 6.269077 TGAAATTGACACCCTCTACTCACTAA 59.731 38.462 0.00 0.00 0.00 2.24
193 194 5.778241 TGAAATTGACACCCTCTACTCACTA 59.222 40.000 0.00 0.00 0.00 2.74
194 195 4.593206 TGAAATTGACACCCTCTACTCACT 59.407 41.667 0.00 0.00 0.00 3.41
195 196 4.894784 TGAAATTGACACCCTCTACTCAC 58.105 43.478 0.00 0.00 0.00 3.51
196 197 4.020218 CCTGAAATTGACACCCTCTACTCA 60.020 45.833 0.00 0.00 0.00 3.41
197 198 4.508662 CCTGAAATTGACACCCTCTACTC 58.491 47.826 0.00 0.00 0.00 2.59
198 199 3.264450 CCCTGAAATTGACACCCTCTACT 59.736 47.826 0.00 0.00 0.00 2.57
199 200 3.263425 TCCCTGAAATTGACACCCTCTAC 59.737 47.826 0.00 0.00 0.00 2.59
200 201 3.526899 TCCCTGAAATTGACACCCTCTA 58.473 45.455 0.00 0.00 0.00 2.43
201 202 2.348472 TCCCTGAAATTGACACCCTCT 58.652 47.619 0.00 0.00 0.00 3.69
202 203 2.879103 TCCCTGAAATTGACACCCTC 57.121 50.000 0.00 0.00 0.00 4.30
203 204 3.833559 AATCCCTGAAATTGACACCCT 57.166 42.857 0.00 0.00 0.00 4.34
204 205 3.831911 TCAAATCCCTGAAATTGACACCC 59.168 43.478 0.00 0.00 0.00 4.61
205 206 5.467035 TTCAAATCCCTGAAATTGACACC 57.533 39.130 0.00 0.00 32.39 4.16
206 207 5.011023 ACCTTCAAATCCCTGAAATTGACAC 59.989 40.000 0.00 0.00 34.96 3.67
207 208 5.147032 ACCTTCAAATCCCTGAAATTGACA 58.853 37.500 0.00 0.00 34.96 3.58
208 209 5.728637 ACCTTCAAATCCCTGAAATTGAC 57.271 39.130 0.00 0.00 34.96 3.18
209 210 5.837979 TCAACCTTCAAATCCCTGAAATTGA 59.162 36.000 7.88 7.88 37.74 2.57
210 211 6.100404 TCAACCTTCAAATCCCTGAAATTG 57.900 37.500 0.00 0.00 34.96 2.32
211 212 5.246883 CCTCAACCTTCAAATCCCTGAAATT 59.753 40.000 0.00 0.00 34.96 1.82
212 213 4.774200 CCTCAACCTTCAAATCCCTGAAAT 59.226 41.667 0.00 0.00 34.96 2.17
213 214 4.151883 CCTCAACCTTCAAATCCCTGAAA 58.848 43.478 0.00 0.00 34.96 2.69
214 215 3.140144 ACCTCAACCTTCAAATCCCTGAA 59.860 43.478 0.00 0.00 34.22 3.02
215 216 2.716424 ACCTCAACCTTCAAATCCCTGA 59.284 45.455 0.00 0.00 0.00 3.86
216 217 3.160679 ACCTCAACCTTCAAATCCCTG 57.839 47.619 0.00 0.00 0.00 4.45
217 218 3.897505 CAAACCTCAACCTTCAAATCCCT 59.102 43.478 0.00 0.00 0.00 4.20
218 219 3.895041 TCAAACCTCAACCTTCAAATCCC 59.105 43.478 0.00 0.00 0.00 3.85
219 220 5.728637 ATCAAACCTCAACCTTCAAATCC 57.271 39.130 0.00 0.00 0.00 3.01
220 221 6.865205 CAGAATCAAACCTCAACCTTCAAATC 59.135 38.462 0.00 0.00 0.00 2.17
221 222 6.550854 TCAGAATCAAACCTCAACCTTCAAAT 59.449 34.615 0.00 0.00 0.00 2.32
222 223 5.890985 TCAGAATCAAACCTCAACCTTCAAA 59.109 36.000 0.00 0.00 0.00 2.69
223 224 5.299279 GTCAGAATCAAACCTCAACCTTCAA 59.701 40.000 0.00 0.00 0.00 2.69
224 225 4.821805 GTCAGAATCAAACCTCAACCTTCA 59.178 41.667 0.00 0.00 0.00 3.02
225 226 4.083802 CGTCAGAATCAAACCTCAACCTTC 60.084 45.833 0.00 0.00 0.00 3.46
226 227 3.815401 CGTCAGAATCAAACCTCAACCTT 59.185 43.478 0.00 0.00 0.00 3.50
227 228 3.071023 TCGTCAGAATCAAACCTCAACCT 59.929 43.478 0.00 0.00 0.00 3.50
228 229 3.399330 TCGTCAGAATCAAACCTCAACC 58.601 45.455 0.00 0.00 0.00 3.77
229 230 3.120511 GCTCGTCAGAATCAAACCTCAAC 60.121 47.826 0.00 0.00 0.00 3.18
230 231 3.067106 GCTCGTCAGAATCAAACCTCAA 58.933 45.455 0.00 0.00 0.00 3.02
231 232 2.612972 GGCTCGTCAGAATCAAACCTCA 60.613 50.000 0.00 0.00 0.00 3.86
232 233 2.003301 GGCTCGTCAGAATCAAACCTC 58.997 52.381 0.00 0.00 0.00 3.85
233 234 1.347707 TGGCTCGTCAGAATCAAACCT 59.652 47.619 0.00 0.00 0.00 3.50
234 235 1.808411 TGGCTCGTCAGAATCAAACC 58.192 50.000 0.00 0.00 0.00 3.27
235 236 4.811024 TCATATGGCTCGTCAGAATCAAAC 59.189 41.667 2.13 0.00 0.00 2.93
236 237 5.022282 TCATATGGCTCGTCAGAATCAAA 57.978 39.130 2.13 0.00 0.00 2.69
237 238 4.670896 TCATATGGCTCGTCAGAATCAA 57.329 40.909 2.13 0.00 0.00 2.57
238 239 4.670896 TTCATATGGCTCGTCAGAATCA 57.329 40.909 2.13 0.00 0.00 2.57
239 240 5.698089 TCAATTCATATGGCTCGTCAGAATC 59.302 40.000 2.13 0.00 0.00 2.52
240 241 5.614308 TCAATTCATATGGCTCGTCAGAAT 58.386 37.500 2.13 0.00 0.00 2.40
241 242 5.022282 TCAATTCATATGGCTCGTCAGAA 57.978 39.130 2.13 0.00 0.00 3.02
242 243 4.670896 TCAATTCATATGGCTCGTCAGA 57.329 40.909 2.13 0.00 0.00 3.27
243 244 4.212847 CCTTCAATTCATATGGCTCGTCAG 59.787 45.833 2.13 0.00 0.00 3.51
244 245 4.129380 CCTTCAATTCATATGGCTCGTCA 58.871 43.478 2.13 0.00 0.00 4.35
245 246 4.130118 ACCTTCAATTCATATGGCTCGTC 58.870 43.478 2.13 0.00 0.00 4.20
246 247 4.156455 ACCTTCAATTCATATGGCTCGT 57.844 40.909 2.13 0.00 0.00 4.18
247 248 5.505173 AAACCTTCAATTCATATGGCTCG 57.495 39.130 2.13 0.00 0.00 5.03
248 249 9.087424 GTTTTAAACCTTCAATTCATATGGCTC 57.913 33.333 2.13 0.00 0.00 4.70
249 250 8.592809 TGTTTTAAACCTTCAATTCATATGGCT 58.407 29.630 5.32 0.00 0.00 4.75
250 251 8.770438 TGTTTTAAACCTTCAATTCATATGGC 57.230 30.769 5.32 0.00 0.00 4.40
255 256 9.750125 GAAGTCTGTTTTAAACCTTCAATTCAT 57.250 29.630 15.38 0.00 31.59 2.57
256 257 8.744652 TGAAGTCTGTTTTAAACCTTCAATTCA 58.255 29.630 18.55 12.47 35.62 2.57
257 258 9.020813 GTGAAGTCTGTTTTAAACCTTCAATTC 57.979 33.333 20.85 11.98 38.23 2.17
258 259 8.749354 AGTGAAGTCTGTTTTAAACCTTCAATT 58.251 29.630 20.85 13.70 38.23 2.32
259 260 8.293699 AGTGAAGTCTGTTTTAAACCTTCAAT 57.706 30.769 20.85 18.61 38.23 2.57
260 261 7.610305 AGAGTGAAGTCTGTTTTAAACCTTCAA 59.390 33.333 20.85 9.56 38.23 2.69
261 262 7.110155 AGAGTGAAGTCTGTTTTAAACCTTCA 58.890 34.615 17.59 17.59 35.94 3.02
262 263 7.280205 TGAGAGTGAAGTCTGTTTTAAACCTTC 59.720 37.037 14.18 14.18 31.78 3.46
263 264 7.110155 TGAGAGTGAAGTCTGTTTTAAACCTT 58.890 34.615 5.32 1.82 0.00 3.50
264 265 6.650120 TGAGAGTGAAGTCTGTTTTAAACCT 58.350 36.000 5.32 0.00 0.00 3.50
265 266 6.920569 TGAGAGTGAAGTCTGTTTTAAACC 57.079 37.500 5.32 0.00 0.00 3.27
266 267 6.900299 CGTTGAGAGTGAAGTCTGTTTTAAAC 59.100 38.462 0.20 0.20 0.00 2.01
267 268 6.814644 TCGTTGAGAGTGAAGTCTGTTTTAAA 59.185 34.615 0.00 0.00 0.00 1.52
268 269 6.334989 TCGTTGAGAGTGAAGTCTGTTTTAA 58.665 36.000 0.00 0.00 0.00 1.52
269 270 5.898174 TCGTTGAGAGTGAAGTCTGTTTTA 58.102 37.500 0.00 0.00 0.00 1.52
270 271 4.755411 TCGTTGAGAGTGAAGTCTGTTTT 58.245 39.130 0.00 0.00 0.00 2.43
271 272 4.386867 TCGTTGAGAGTGAAGTCTGTTT 57.613 40.909 0.00 0.00 0.00 2.83
272 273 4.592485 ATCGTTGAGAGTGAAGTCTGTT 57.408 40.909 0.00 0.00 0.00 3.16
273 274 4.551388 GAATCGTTGAGAGTGAAGTCTGT 58.449 43.478 0.00 0.00 0.00 3.41
274 275 3.923461 GGAATCGTTGAGAGTGAAGTCTG 59.077 47.826 0.00 0.00 0.00 3.51
275 276 3.829601 AGGAATCGTTGAGAGTGAAGTCT 59.170 43.478 0.00 0.00 0.00 3.24
276 277 4.181309 AGGAATCGTTGAGAGTGAAGTC 57.819 45.455 0.00 0.00 0.00 3.01
277 278 4.561105 GAAGGAATCGTTGAGAGTGAAGT 58.439 43.478 0.00 0.00 0.00 3.01
278 279 3.610242 CGAAGGAATCGTTGAGAGTGAAG 59.390 47.826 0.00 0.00 46.52 3.02
279 280 3.575630 CGAAGGAATCGTTGAGAGTGAA 58.424 45.455 0.00 0.00 46.52 3.18
280 281 3.217599 CGAAGGAATCGTTGAGAGTGA 57.782 47.619 0.00 0.00 46.52 3.41
296 297 4.060900 ACAGATGCAATATACTGCCGAAG 58.939 43.478 3.33 0.00 41.90 3.79
297 298 4.071961 ACAGATGCAATATACTGCCGAA 57.928 40.909 3.33 0.00 41.90 4.30
298 299 3.751479 ACAGATGCAATATACTGCCGA 57.249 42.857 3.33 0.00 41.90 5.54
299 300 4.931601 ACATACAGATGCAATATACTGCCG 59.068 41.667 3.33 0.00 41.90 5.69
300 301 6.205464 ACAACATACAGATGCAATATACTGCC 59.795 38.462 3.33 0.00 41.90 4.85
301 302 7.194607 ACAACATACAGATGCAATATACTGC 57.805 36.000 0.00 0.00 42.95 4.40
302 303 9.696917 TCTACAACATACAGATGCAATATACTG 57.303 33.333 0.00 0.00 36.43 2.74
303 304 9.698309 GTCTACAACATACAGATGCAATATACT 57.302 33.333 0.00 0.00 36.43 2.12
304 305 9.476202 TGTCTACAACATACAGATGCAATATAC 57.524 33.333 0.00 0.00 36.43 1.47
317 318 9.661886 ACAGAGCTGTCCATGTCTACAACATAC 62.662 44.444 0.00 0.00 42.65 2.39
318 319 7.756483 ACAGAGCTGTCCATGTCTACAACATA 61.756 42.308 0.00 0.00 42.65 2.29
319 320 7.030300 ACAGAGCTGTCCATGTCTACAACAT 62.030 44.000 0.00 0.00 44.30 2.71
320 321 2.899900 AGAGCTGTCCATGTCTACAACA 59.100 45.455 0.00 0.00 43.51 3.33
321 322 3.257393 CAGAGCTGTCCATGTCTACAAC 58.743 50.000 0.00 0.00 0.00 3.32
322 323 2.899900 ACAGAGCTGTCCATGTCTACAA 59.100 45.455 0.00 0.00 40.24 2.41
323 324 2.529632 ACAGAGCTGTCCATGTCTACA 58.470 47.619 0.00 0.00 40.24 2.74
324 325 4.927978 ATACAGAGCTGTCCATGTCTAC 57.072 45.455 6.38 0.00 43.74 2.59
325 326 5.047731 GCATATACAGAGCTGTCCATGTCTA 60.048 44.000 6.38 0.00 43.74 2.59
326 327 4.262377 GCATATACAGAGCTGTCCATGTCT 60.262 45.833 6.38 0.00 43.74 3.41
327 328 3.993081 GCATATACAGAGCTGTCCATGTC 59.007 47.826 6.38 5.21 43.74 3.06
328 329 3.645212 AGCATATACAGAGCTGTCCATGT 59.355 43.478 6.38 0.00 43.74 3.21
329 330 4.268797 AGCATATACAGAGCTGTCCATG 57.731 45.455 6.38 11.91 43.74 3.66
330 331 6.617782 ATTAGCATATACAGAGCTGTCCAT 57.382 37.500 6.38 0.00 43.74 3.41
331 332 7.539034 TTATTAGCATATACAGAGCTGTCCA 57.461 36.000 6.38 0.00 43.74 4.02
345 346 9.435688 CCGCCATTAGCATATATTATTAGCATA 57.564 33.333 0.00 0.00 44.04 3.14
346 347 7.094634 GCCGCCATTAGCATATATTATTAGCAT 60.095 37.037 0.00 0.00 44.04 3.79
347 348 6.204688 GCCGCCATTAGCATATATTATTAGCA 59.795 38.462 0.00 0.00 44.04 3.49
348 349 6.428159 AGCCGCCATTAGCATATATTATTAGC 59.572 38.462 0.00 0.00 44.04 3.09
349 350 7.095060 CCAGCCGCCATTAGCATATATTATTAG 60.095 40.741 0.00 0.00 44.04 1.73
350 351 6.710295 CCAGCCGCCATTAGCATATATTATTA 59.290 38.462 0.00 0.00 44.04 0.98
351 352 5.532406 CCAGCCGCCATTAGCATATATTATT 59.468 40.000 0.00 0.00 44.04 1.40
352 353 5.065914 CCAGCCGCCATTAGCATATATTAT 58.934 41.667 0.00 0.00 44.04 1.28
375 376 2.823747 AGCCCCGGAAAACAGATTTTAC 59.176 45.455 0.73 0.00 38.17 2.01
381 382 0.536460 GTCAAGCCCCGGAAAACAGA 60.536 55.000 0.73 0.00 0.00 3.41
411 412 6.435430 TGCAACACGAAAGCTCATTATTAT 57.565 33.333 0.00 0.00 0.00 1.28
517 518 1.739466 GCAAGCCATTCTTCATCACGA 59.261 47.619 0.00 0.00 31.27 4.35
570 653 2.166821 GGCTGATAGCTGAGATGTGG 57.833 55.000 0.00 0.00 41.99 4.17
619 702 0.037734 ATCCTTCCGTTGGTCCAACC 59.962 55.000 25.78 10.81 40.82 3.77
622 705 1.682849 CCATCCTTCCGTTGGTCCA 59.317 57.895 0.00 0.00 0.00 4.02
705 790 4.456253 CGGAGTCGTGGACGGTCG 62.456 72.222 1.43 0.00 37.67 4.79
710 795 4.477975 CTCGCCGGAGTCGTGGAC 62.478 72.222 5.05 0.00 35.48 4.02
790 875 1.953138 GATCGTCGGCAGAGCATGG 60.953 63.158 0.00 0.00 0.00 3.66
843 928 1.000486 AGCTTAGCCGACTCCTCCA 60.000 57.895 0.00 0.00 0.00 3.86
901 986 5.249420 TCGTGGAATGGAATGATGTTGTTA 58.751 37.500 0.00 0.00 0.00 2.41
909 994 4.525996 ACATGAATCGTGGAATGGAATGA 58.474 39.130 7.43 0.00 0.00 2.57
910 995 4.336153 TGACATGAATCGTGGAATGGAATG 59.664 41.667 7.43 0.00 0.00 2.67
911 996 4.525996 TGACATGAATCGTGGAATGGAAT 58.474 39.130 7.43 0.00 0.00 3.01
912 997 3.949132 TGACATGAATCGTGGAATGGAA 58.051 40.909 7.43 0.00 0.00 3.53
913 998 3.625649 TGACATGAATCGTGGAATGGA 57.374 42.857 7.43 0.00 0.00 3.41
945 1035 1.090052 CCTCCAACGATTTCTCCGCC 61.090 60.000 0.00 0.00 0.00 6.13
948 1042 0.391263 ACGCCTCCAACGATTTCTCC 60.391 55.000 0.00 0.00 0.00 3.71
964 1058 2.296190 AGGGGAAGAAAACATCAAACGC 59.704 45.455 0.00 0.00 0.00 4.84
1161 1259 2.811317 GCGAGGAACAGCAGGTCG 60.811 66.667 0.00 0.00 0.00 4.79
1204 1302 0.474854 TTGGTAGGCCAGAGGTCCAA 60.475 55.000 5.01 7.33 46.91 3.53
1218 1316 0.474854 TGAAGGTGGAGGGCTTGGTA 60.475 55.000 0.00 0.00 0.00 3.25
1245 1343 5.816919 TGACGAAAGAGAAAACCATTTCAC 58.183 37.500 4.34 0.00 46.03 3.18
1253 1351 6.091034 GGGATCTAGTTGACGAAAGAGAAAAC 59.909 42.308 0.00 0.00 0.00 2.43
1256 1354 5.017490 AGGGATCTAGTTGACGAAAGAGAA 58.983 41.667 0.00 0.00 0.00 2.87
1260 1358 3.181474 GGGAGGGATCTAGTTGACGAAAG 60.181 52.174 0.00 0.00 0.00 2.62
1573 1678 4.373116 TCGTTGGCGTGGAGGAGC 62.373 66.667 0.00 0.00 39.49 4.70
1716 1821 9.959749 TTGAACTAAAACCATGACAAGAATTAC 57.040 29.630 0.00 0.00 0.00 1.89
1735 1840 9.944376 AAACAGAGCAGATACTAATTTGAACTA 57.056 29.630 0.00 0.00 0.00 2.24
1764 1869 4.751600 TGAAGCGATCATACTATTTGCAGG 59.248 41.667 0.00 0.00 31.50 4.85
1782 1887 0.450983 GGCAGCTGATGACTTGAAGC 59.549 55.000 20.43 0.00 32.26 3.86
1792 1897 4.133078 GCTTAAATAGACAGGCAGCTGAT 58.867 43.478 20.43 1.05 0.00 2.90
1866 1975 1.298859 GCTCCTGTACTTGCCGTTGG 61.299 60.000 0.00 0.00 0.00 3.77
1921 2030 0.322816 ACGCTGCAATGGTGATCCTT 60.323 50.000 0.00 0.00 34.23 3.36
2113 2224 3.897141 TTAGTCACAACACTCACCACA 57.103 42.857 0.00 0.00 0.00 4.17
2201 2312 6.645827 CCATTCTATGAGAAGACTGCACATAG 59.354 42.308 17.59 17.59 37.69 2.23
2307 2418 9.772973 CACAGGCAGTATTTACACCTAATAATA 57.227 33.333 2.98 0.00 34.49 0.98
2308 2419 7.719633 CCACAGGCAGTATTTACACCTAATAAT 59.280 37.037 2.98 0.00 34.49 1.28
2309 2420 7.051623 CCACAGGCAGTATTTACACCTAATAA 58.948 38.462 2.98 0.00 34.49 1.40
2448 2559 1.205417 TCCGACAAGTATTTCCGGACC 59.795 52.381 1.83 0.00 43.47 4.46
2569 2681 5.533903 ACAGTTCTTCTCAATTGCTGATTGT 59.466 36.000 12.18 7.38 44.46 2.71
2682 2794 9.404848 TGAGCTTTTATCTTGATCTTCATTGAT 57.595 29.630 0.00 0.00 0.00 2.57
2845 2957 1.684049 AAGGAGAGGCCGTGGAGAG 60.684 63.158 0.00 0.00 43.43 3.20
2853 2965 3.118261 TGATCAATGTACAAGGAGAGGCC 60.118 47.826 0.00 0.00 0.00 5.19
3001 3113 5.880887 CGGAGATAGAGGCCTTTTTACTTTT 59.119 40.000 6.77 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.