Multiple sequence alignment - TraesCS1B01G234000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G234000 chr1B 100.000 5211 0 0 1 5211 419973478 419968268 0.000000e+00 9624.0
1 TraesCS1B01G234000 chr1B 100.000 412 0 0 5360 5771 419968119 419967708 0.000000e+00 761.0
2 TraesCS1B01G234000 chr1B 98.695 383 3 2 4829 5211 371358955 371358575 0.000000e+00 678.0
3 TraesCS1B01G234000 chr1B 94.118 68 3 1 5705 5771 65586742 65586809 1.020000e-17 102.0
4 TraesCS1B01G234000 chr1D 91.463 3596 220 42 503 4068 309985237 309988775 0.000000e+00 4859.0
5 TraesCS1B01G234000 chr1D 94.851 738 29 4 4106 4843 309988776 309989504 0.000000e+00 1144.0
6 TraesCS1B01G234000 chr1D 95.222 293 10 2 1 292 309982272 309982561 1.470000e-125 460.0
7 TraesCS1B01G234000 chr3A 89.404 2567 164 38 1 2530 128544664 128542169 0.000000e+00 3134.0
8 TraesCS1B01G234000 chr3A 91.186 1543 95 20 2530 4064 128542138 128540629 0.000000e+00 2058.0
9 TraesCS1B01G234000 chr3A 96.206 659 22 1 4101 4759 128540634 128539979 0.000000e+00 1075.0
10 TraesCS1B01G234000 chr3A 91.429 70 6 0 5360 5429 128539570 128539501 4.760000e-16 97.1
11 TraesCS1B01G234000 chr3A 97.561 41 1 0 5566 5606 128539407 128539367 2.880000e-08 71.3
12 TraesCS1B01G234000 chr1A 91.546 2283 114 38 2530 4802 389831486 389833699 0.000000e+00 3073.0
13 TraesCS1B01G234000 chr1A 88.345 2574 163 44 1 2530 389828974 389831454 0.000000e+00 2964.0
14 TraesCS1B01G234000 chr1A 96.667 360 11 1 4851 5210 10403626 10403984 1.070000e-166 597.0
15 TraesCS1B01G234000 chr1A 91.429 70 6 0 5360 5429 389833731 389833800 4.760000e-16 97.1
16 TraesCS1B01G234000 chr1A 97.561 41 1 0 5563 5603 389833891 389833931 2.880000e-08 71.3
17 TraesCS1B01G234000 chrUn 100.000 1096 0 0 4116 5211 440332670 440331575 0.000000e+00 2025.0
18 TraesCS1B01G234000 chrUn 97.650 383 8 1 4829 5211 53749496 53749115 0.000000e+00 656.0
19 TraesCS1B01G234000 chrUn 93.103 58 3 1 5622 5678 38584153 38584210 3.710000e-12 84.2
20 TraesCS1B01G234000 chrUn 93.103 58 3 1 5622 5678 38604659 38604716 3.710000e-12 84.2
21 TraesCS1B01G234000 chrUn 93.103 58 3 1 5622 5678 309946617 309946674 3.710000e-12 84.2
22 TraesCS1B01G234000 chrUn 93.103 58 3 1 5622 5678 354344642 354344585 3.710000e-12 84.2
23 TraesCS1B01G234000 chr2A 100.000 1096 0 0 4116 5211 35795384 35794289 0.000000e+00 2025.0
24 TraesCS1B01G234000 chr7B 97.561 369 7 2 4843 5211 714751369 714751003 1.060000e-176 630.0
25 TraesCS1B01G234000 chr2B 96.277 376 12 2 4836 5211 471080620 471080993 2.950000e-172 616.0
26 TraesCS1B01G234000 chr2B 94.667 375 19 1 4837 5211 324662648 324662275 1.080000e-161 580.0
27 TraesCS1B01G234000 chr3B 96.961 362 9 2 4850 5211 393298509 393298868 1.780000e-169 606.0
28 TraesCS1B01G234000 chr3B 98.305 59 1 0 5713 5771 642090174 642090116 2.840000e-18 104.0
29 TraesCS1B01G234000 chr3B 94.030 67 2 2 5705 5771 193963441 193963505 3.680000e-17 100.0
30 TraesCS1B01G234000 chr3B 93.103 58 3 1 5622 5678 41086502 41086445 3.710000e-12 84.2
31 TraesCS1B01G234000 chr3B 93.103 58 3 1 5622 5678 41106977 41106920 3.710000e-12 84.2
32 TraesCS1B01G234000 chr3B 93.103 58 3 1 5622 5678 41127166 41127109 3.710000e-12 84.2
33 TraesCS1B01G234000 chr3B 93.103 58 3 1 5622 5678 42210256 42210313 3.710000e-12 84.2
34 TraesCS1B01G234000 chr6D 78.626 262 47 8 2536 2792 10424200 10424457 1.290000e-36 165.0
35 TraesCS1B01G234000 chr5A 96.774 62 2 0 5710 5771 521678238 521678177 2.840000e-18 104.0
36 TraesCS1B01G234000 chr5A 92.958 71 4 1 5702 5771 687716832 687716902 1.020000e-17 102.0
37 TraesCS1B01G234000 chr7A 94.118 68 3 1 5704 5771 708293144 708293210 1.020000e-17 102.0
38 TraesCS1B01G234000 chr5B 94.118 68 2 2 5704 5771 158897122 158897057 1.020000e-17 102.0
39 TraesCS1B01G234000 chr6B 92.754 69 5 0 5703 5771 385517151 385517219 3.680000e-17 100.0
40 TraesCS1B01G234000 chr6B 93.103 58 3 1 5622 5678 720915763 720915706 3.710000e-12 84.2
41 TraesCS1B01G234000 chr4B 93.939 66 4 0 5706 5771 189135721 189135786 3.680000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G234000 chr1B 419967708 419973478 5770 True 5192.500000 9624 100.000000 1 5771 2 chr1B.!!$R2 5770
1 TraesCS1B01G234000 chr1D 309982272 309989504 7232 False 2154.333333 4859 93.845333 1 4843 3 chr1D.!!$F1 4842
2 TraesCS1B01G234000 chr3A 128539367 128544664 5297 True 1287.080000 3134 93.157200 1 5606 5 chr3A.!!$R1 5605
3 TraesCS1B01G234000 chr1A 389828974 389833931 4957 False 1551.350000 3073 92.220250 1 5603 4 chr1A.!!$F2 5602
4 TraesCS1B01G234000 chrUn 440331575 440332670 1095 True 2025.000000 2025 100.000000 4116 5211 1 chrUn.!!$R3 1095
5 TraesCS1B01G234000 chr2A 35794289 35795384 1095 True 2025.000000 2025 100.000000 4116 5211 1 chr2A.!!$R1 1095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 3360 0.037139 TTTACTACCGCGTGCCATGT 60.037 50.000 4.92 0.00 0.0 3.21 F
1040 3589 0.322277 AACATGGAGCAGGCTGTGAG 60.322 55.000 17.16 3.42 0.0 3.51 F
2269 4838 0.245539 TAAGTTCAAGGACGAGGCGG 59.754 55.000 0.00 0.00 0.0 6.13 F
3374 5981 1.332686 CATCCCATGTGTGATTCGCTG 59.667 52.381 0.00 0.00 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 4427 0.457851 AGTGCACTAGCCTGACGATC 59.542 55.000 20.16 0.00 41.13 3.69 R
2775 5380 1.206371 GCGCCAAAGAACTACTCCCTA 59.794 52.381 0.00 0.00 0.00 3.53 R
3468 6075 0.832135 AAACTCCAGCACTCGAGGGA 60.832 55.000 21.51 13.39 0.00 4.20 R
5368 8318 5.673337 TGCTAGTTTGAGTTTCACATCAC 57.327 39.130 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 170 3.008049 CCGGTAGGGGTATACGTACTAGT 59.992 52.174 0.00 0.00 33.49 2.57
169 171 4.222145 CCGGTAGGGGTATACGTACTAGTA 59.778 50.000 0.00 0.00 33.49 1.82
170 172 5.411781 CGGTAGGGGTATACGTACTAGTAG 58.588 50.000 1.87 0.00 33.49 2.57
297 299 3.187227 GTCGTCATGCAACAGTTTCTCAT 59.813 43.478 0.00 0.00 0.00 2.90
299 301 3.240069 GTCATGCAACAGTTTCTCATGC 58.760 45.455 12.10 1.55 35.70 4.06
303 305 2.689471 TGCAACAGTTTCTCATGCAAGT 59.311 40.909 0.00 0.00 43.39 3.16
305 307 4.023792 TGCAACAGTTTCTCATGCAAGTAG 60.024 41.667 0.00 0.00 43.39 2.57
307 309 5.179368 GCAACAGTTTCTCATGCAAGTAGTA 59.821 40.000 0.00 0.00 37.00 1.82
336 338 1.544724 GCCCTTGTGCCTTGTTGATA 58.455 50.000 0.00 0.00 0.00 2.15
410 418 2.680339 GTGCAGCTCCTTCTACAATTCC 59.320 50.000 0.00 0.00 0.00 3.01
420 433 7.574030 GCTCCTTCTACAATTCCACTCTTTTTC 60.574 40.741 0.00 0.00 0.00 2.29
444 457 4.585955 TCCTTGGAGTAGAATATCACGC 57.414 45.455 0.00 0.00 0.00 5.34
446 459 3.243434 CCTTGGAGTAGAATATCACGCGT 60.243 47.826 5.58 5.58 0.00 6.01
456 469 5.458891 AGAATATCACGCGTATGTTAGGAC 58.541 41.667 13.44 0.00 0.00 3.85
479 492 2.383527 GCCACTCGCTCGGAAAGTG 61.384 63.158 7.51 7.51 40.05 3.16
501 3021 5.527582 GTGCAGTAAAAACTTTGGAGAGAGA 59.472 40.000 0.00 0.00 0.00 3.10
540 3074 0.541063 TCACGTAGGGCCAGTGAGAA 60.541 55.000 20.44 4.57 39.63 2.87
563 3097 2.892425 GCGGAGTCGAAGCCATGG 60.892 66.667 7.63 7.63 39.00 3.66
566 3100 1.153086 GGAGTCGAAGCCATGGCAT 60.153 57.895 37.18 27.80 44.88 4.40
567 3101 0.749454 GGAGTCGAAGCCATGGCATT 60.749 55.000 37.18 26.62 44.88 3.56
601 3139 0.326595 TTGCTCGGGCCATTTACTCA 59.673 50.000 3.94 0.00 37.74 3.41
604 3142 0.179000 CTCGGGCCATTTACTCAGCT 59.821 55.000 4.39 0.00 0.00 4.24
608 3146 0.737219 GGCCATTTACTCAGCTGCAG 59.263 55.000 10.11 10.11 0.00 4.41
681 3222 0.797579 TTACTCCTCCCACTTCCCCT 59.202 55.000 0.00 0.00 0.00 4.79
722 3264 2.043852 TCTCCCTGTCGCTCTCCC 60.044 66.667 0.00 0.00 0.00 4.30
723 3265 3.522731 CTCCCTGTCGCTCTCCCG 61.523 72.222 0.00 0.00 0.00 5.14
753 3295 0.459489 CTCTTCCTCTTCCTCTGCGG 59.541 60.000 0.00 0.00 0.00 5.69
760 3302 4.441695 TTCCTCTGCGGCTCTGCG 62.442 66.667 0.00 0.00 37.81 5.18
763 3305 4.127040 CTCTGCGGCTCTGCGTCT 62.127 66.667 0.00 0.00 37.81 4.18
764 3306 3.639541 CTCTGCGGCTCTGCGTCTT 62.640 63.158 0.00 0.00 37.81 3.01
765 3307 3.184683 CTGCGGCTCTGCGTCTTC 61.185 66.667 0.00 0.00 37.81 2.87
766 3308 3.921767 CTGCGGCTCTGCGTCTTCA 62.922 63.158 0.00 0.00 37.81 3.02
767 3309 3.184683 GCGGCTCTGCGTCTTCAG 61.185 66.667 0.00 0.00 35.46 3.02
768 3310 2.259818 CGGCTCTGCGTCTTCAGT 59.740 61.111 0.00 0.00 35.63 3.41
816 3358 0.248289 AGTTTACTACCGCGTGCCAT 59.752 50.000 4.92 0.00 0.00 4.40
818 3360 0.037139 TTTACTACCGCGTGCCATGT 60.037 50.000 4.92 0.00 0.00 3.21
1040 3589 0.322277 AACATGGAGCAGGCTGTGAG 60.322 55.000 17.16 3.42 0.00 3.51
1067 3616 2.047213 AAAGAACCGGGCAAGGTCGA 62.047 55.000 6.32 0.00 45.21 4.20
1197 3746 3.926821 TTTATCCGTCTTGGTTTTGCC 57.073 42.857 0.00 0.00 39.52 4.52
1203 3752 1.454847 TCTTGGTTTTGCCTGCCGT 60.455 52.632 0.00 0.00 38.35 5.68
1206 3755 1.040339 TTGGTTTTGCCTGCCGTTCT 61.040 50.000 0.00 0.00 38.35 3.01
1218 3767 1.578206 GCCGTTCTTCTCAACCCTGC 61.578 60.000 0.00 0.00 0.00 4.85
1223 3772 3.481453 GTTCTTCTCAACCCTGCTTCTT 58.519 45.455 0.00 0.00 0.00 2.52
1227 3776 4.580580 TCTTCTCAACCCTGCTTCTTTTTC 59.419 41.667 0.00 0.00 0.00 2.29
1237 3786 5.300752 CCTGCTTCTTTTTCTCTGTCTGTA 58.699 41.667 0.00 0.00 0.00 2.74
1242 3791 6.128418 GCTTCTTTTTCTCTGTCTGTATCCAC 60.128 42.308 0.00 0.00 0.00 4.02
1245 3794 3.876274 TTCTCTGTCTGTATCCACTGC 57.124 47.619 0.00 0.00 0.00 4.40
1270 3819 1.021920 GCTTCTTCGGGCAGGAACTC 61.022 60.000 0.00 0.00 34.60 3.01
1340 3889 0.622136 TGCTGCCTTCATGAGTGGAT 59.378 50.000 17.67 0.00 0.00 3.41
1362 3911 4.691860 ATTACTGATCAAGCAAGCACAC 57.308 40.909 0.00 0.00 0.00 3.82
1529 4078 4.052229 CCGAACCACCGCGTCTCT 62.052 66.667 4.92 0.00 0.00 3.10
1578 4137 1.608025 CCACTGCTTTCCTGACGCTAA 60.608 52.381 0.00 0.00 0.00 3.09
1580 4139 1.618837 ACTGCTTTCCTGACGCTAAGA 59.381 47.619 0.00 0.00 0.00 2.10
1591 4150 3.348236 GCTAAGATGCGCCATGGG 58.652 61.111 15.13 4.77 0.00 4.00
1592 4151 2.912624 GCTAAGATGCGCCATGGGC 61.913 63.158 15.13 15.60 46.75 5.36
1623 4182 4.039973 TCTCCGTCTGAGTAATTGGTGTTT 59.960 41.667 0.00 0.00 42.12 2.83
1636 4195 4.314740 TTGGTGTTTACAATTGCTGGAC 57.685 40.909 5.05 0.30 0.00 4.02
1768 4327 0.608640 CTTTCCAGCTCAGGTACCGT 59.391 55.000 6.18 0.00 0.00 4.83
1769 4328 1.822990 CTTTCCAGCTCAGGTACCGTA 59.177 52.381 6.18 0.00 0.00 4.02
1770 4329 1.180029 TTCCAGCTCAGGTACCGTAC 58.820 55.000 6.18 0.00 0.00 3.67
1852 4412 9.844257 ATTGTTTACATTTCCTTCCATGAAAAA 57.156 25.926 0.00 0.00 35.52 1.94
1867 4427 7.625553 TCCATGAAAAACAAAATTTACTTGCG 58.374 30.769 0.00 0.00 0.00 4.85
1885 4445 0.867753 CGATCGTCAGGCTAGTGCAC 60.868 60.000 9.40 9.40 41.91 4.57
1894 4454 4.865365 GTCAGGCTAGTGCACTTTTAGTAG 59.135 45.833 27.06 16.04 41.91 2.57
1895 4455 4.527038 TCAGGCTAGTGCACTTTTAGTAGT 59.473 41.667 27.06 0.00 41.91 2.73
1896 4456 5.713389 TCAGGCTAGTGCACTTTTAGTAGTA 59.287 40.000 27.06 1.85 41.91 1.82
1897 4457 6.209986 TCAGGCTAGTGCACTTTTAGTAGTAA 59.790 38.462 27.06 1.01 41.91 2.24
1924 4484 3.748048 GTGAGTAGAAGCAGTGCAATTGA 59.252 43.478 19.20 0.00 0.00 2.57
1926 4486 3.743521 AGTAGAAGCAGTGCAATTGACA 58.256 40.909 19.20 3.95 0.00 3.58
1979 4541 1.421268 TCACTCCATGCTGTTCCAAGT 59.579 47.619 0.00 0.00 0.00 3.16
1983 4545 3.181445 ACTCCATGCTGTTCCAAGTACAA 60.181 43.478 0.00 0.00 0.00 2.41
2026 4595 7.504924 AAAAAGTACAATTTCAGATGGTCGA 57.495 32.000 0.00 0.00 0.00 4.20
2027 4596 7.687941 AAAAGTACAATTTCAGATGGTCGAT 57.312 32.000 0.00 0.00 0.00 3.59
2029 4598 8.786826 AAAGTACAATTTCAGATGGTCGATAA 57.213 30.769 0.00 0.00 0.00 1.75
2143 4712 1.804748 GAAGAGGAAATCGCAAACCGT 59.195 47.619 0.00 0.00 38.35 4.83
2191 4760 6.256539 ACAGAAGTATATTTGATCAGTGCGTG 59.743 38.462 0.00 0.00 0.00 5.34
2194 4763 5.050490 AGTATATTTGATCAGTGCGTGTCC 58.950 41.667 0.00 0.00 0.00 4.02
2219 4788 0.982852 ATCATCGGGGCAGAGTTCCA 60.983 55.000 0.00 0.00 0.00 3.53
2266 4835 3.118956 AGAGCATAAGTTCAAGGACGAGG 60.119 47.826 0.00 0.00 0.00 4.63
2269 4838 0.245539 TAAGTTCAAGGACGAGGCGG 59.754 55.000 0.00 0.00 0.00 6.13
2472 5041 7.872138 TCAGATCCAAGGAAGGTAAAACATAT 58.128 34.615 0.00 0.00 0.00 1.78
2602 5204 1.725641 TCTCTGCATTGCGGTACTTG 58.274 50.000 16.77 4.59 36.18 3.16
2633 5235 6.127952 GCATGCATTTTGTCCCAATTTTGTAT 60.128 34.615 14.21 0.00 0.00 2.29
2646 5248 5.163513 CAATTTTGTATGTCTGAACCTGCC 58.836 41.667 0.00 0.00 0.00 4.85
2667 5270 4.997395 GCCGATTTAAATCAGGAGATGCTA 59.003 41.667 28.15 0.00 35.11 3.49
2681 5284 6.430308 CAGGAGATGCTATGATTAATGCAGTT 59.570 38.462 0.00 0.00 38.87 3.16
2687 5290 6.718388 TGCTATGATTAATGCAGTTCTTTCG 58.282 36.000 0.00 0.00 0.00 3.46
2698 5301 4.036734 TGCAGTTCTTTCGAGCAGAAAATT 59.963 37.500 9.95 0.00 46.98 1.82
2701 5304 6.201517 CAGTTCTTTCGAGCAGAAAATTCAA 58.798 36.000 9.95 0.00 46.98 2.69
2794 5399 3.604875 TTAGGGAGTAGTTCTTTGGCG 57.395 47.619 0.00 0.00 0.00 5.69
2935 5540 1.901650 GCTCGCCGTTCTTGTCAAGG 61.902 60.000 12.66 0.00 0.00 3.61
2966 5571 1.825474 GTGTCATTCTTCCTCGGAGGA 59.175 52.381 22.70 22.70 44.10 3.71
2987 5592 6.971340 AGGAGTAACAGTGAGGAGACTAATA 58.029 40.000 0.00 0.00 44.43 0.98
3085 5690 4.082949 GCAATTACCCACTACAGGTTTGTC 60.083 45.833 0.00 0.00 38.89 3.18
3119 5724 8.531146 TGATGATTATCGTGCTTTATATCCTGA 58.469 33.333 0.00 0.00 36.04 3.86
3123 5728 9.424319 GATTATCGTGCTTTATATCCTGAAGAA 57.576 33.333 0.00 0.00 0.00 2.52
3167 5774 9.705290 AATTGTATAACAAATTTGAGGGTGTTC 57.295 29.630 24.64 7.53 41.96 3.18
3287 5894 7.634671 ATTCTCTTGTCATGCATGTAATTGA 57.365 32.000 25.43 17.16 0.00 2.57
3313 5920 4.608948 AACTCTACACTGGTTTCTCTGG 57.391 45.455 0.00 0.00 0.00 3.86
3317 5924 5.104485 ACTCTACACTGGTTTCTCTGGTTTT 60.104 40.000 0.00 0.00 0.00 2.43
3374 5981 1.332686 CATCCCATGTGTGATTCGCTG 59.667 52.381 0.00 0.00 0.00 5.18
3471 6078 8.803397 AGGATATTTTAGTTACAAGTTGTCCC 57.197 34.615 12.82 4.24 0.00 4.46
3472 6079 8.612145 AGGATATTTTAGTTACAAGTTGTCCCT 58.388 33.333 12.82 11.68 0.00 4.20
3473 6080 8.890718 GGATATTTTAGTTACAAGTTGTCCCTC 58.109 37.037 12.82 1.99 0.00 4.30
3487 6095 0.832135 TCCCTCGAGTGCTGGAGTTT 60.832 55.000 12.31 0.00 34.20 2.66
3518 6126 6.892658 TGTGGCTAACAAATAACTCACATT 57.107 33.333 0.00 0.00 35.24 2.71
3557 6165 1.665679 GTTGGTGGATATGCTGTGACG 59.334 52.381 0.00 0.00 0.00 4.35
3593 6201 0.820891 ACTCCTTGCTGTGTTGCAGG 60.821 55.000 0.00 0.00 45.14 4.85
3656 6264 8.081517 TCATGCCAAATCCTGAATTTAGATTT 57.918 30.769 0.00 2.66 40.05 2.17
3768 6376 7.781056 ACAAACCAAAGAACATGAATAACACT 58.219 30.769 0.00 0.00 0.00 3.55
3772 6383 9.520515 AACCAAAGAACATGAATAACACTCTAT 57.479 29.630 0.00 0.00 0.00 1.98
3809 6420 1.219124 CGCTGAGGGCTGCTCTAAA 59.781 57.895 0.00 0.00 39.13 1.85
3840 6453 2.388735 ACGACCTTCTATCTCATGCCA 58.611 47.619 0.00 0.00 0.00 4.92
3850 6464 6.500684 TCTATCTCATGCCAAAGTTTGAAC 57.499 37.500 17.33 9.12 0.00 3.18
3880 6494 8.818141 ATTCAGATAATTCACGTAATGTCGAT 57.182 30.769 0.00 0.00 34.70 3.59
3888 6502 2.670905 CACGTAATGTCGATGGCTTCAA 59.329 45.455 1.08 0.00 34.70 2.69
3904 6518 9.597999 GATGGCTTCAAATAAAACATCAAAAAC 57.402 29.630 0.00 0.00 34.83 2.43
3905 6519 8.498054 TGGCTTCAAATAAAACATCAAAAACA 57.502 26.923 0.00 0.00 0.00 2.83
3906 6520 9.118300 TGGCTTCAAATAAAACATCAAAAACAT 57.882 25.926 0.00 0.00 0.00 2.71
3971 6585 6.433093 GGATCCTTTTTAGGAAGCAAACTGTA 59.567 38.462 3.84 0.00 41.90 2.74
4012 6629 4.870021 ACTTCTGAATCAAGGCCCTAAT 57.130 40.909 0.00 0.00 0.00 1.73
4013 6630 5.198602 ACTTCTGAATCAAGGCCCTAATT 57.801 39.130 0.00 0.00 0.00 1.40
4023 6640 5.144100 TCAAGGCCCTAATTTTCAGTTTGA 58.856 37.500 0.00 0.00 0.00 2.69
4042 6659 7.080099 AGTTTGATCAACTGTTCATGAATTCG 58.920 34.615 12.12 5.80 44.70 3.34
4046 6665 5.611796 TCAACTGTTCATGAATTCGGAAG 57.388 39.130 12.12 5.71 0.00 3.46
4073 6693 4.706842 ACCAAGAACACTGGATAACACT 57.293 40.909 0.00 0.00 0.00 3.55
4074 6694 4.642429 ACCAAGAACACTGGATAACACTC 58.358 43.478 0.00 0.00 0.00 3.51
4075 6695 4.348168 ACCAAGAACACTGGATAACACTCT 59.652 41.667 0.00 0.00 0.00 3.24
4076 6696 5.542635 ACCAAGAACACTGGATAACACTCTA 59.457 40.000 0.00 0.00 0.00 2.43
4077 6697 6.102663 CCAAGAACACTGGATAACACTCTAG 58.897 44.000 0.00 0.00 0.00 2.43
4078 6698 5.923733 AGAACACTGGATAACACTCTAGG 57.076 43.478 0.00 0.00 0.00 3.02
4079 6699 5.580998 AGAACACTGGATAACACTCTAGGA 58.419 41.667 0.00 0.00 0.00 2.94
4080 6700 5.654650 AGAACACTGGATAACACTCTAGGAG 59.345 44.000 0.00 0.00 35.52 3.69
4081 6701 3.702045 ACACTGGATAACACTCTAGGAGC 59.298 47.826 0.00 0.00 32.04 4.70
4082 6702 3.701542 CACTGGATAACACTCTAGGAGCA 59.298 47.826 0.00 0.00 32.04 4.26
4083 6703 3.702045 ACTGGATAACACTCTAGGAGCAC 59.298 47.826 0.00 0.00 32.04 4.40
4084 6704 3.701542 CTGGATAACACTCTAGGAGCACA 59.298 47.826 0.00 0.00 32.04 4.57
4085 6705 3.447586 TGGATAACACTCTAGGAGCACAC 59.552 47.826 0.00 0.00 32.04 3.82
4086 6706 3.702045 GGATAACACTCTAGGAGCACACT 59.298 47.826 0.00 0.00 32.04 3.55
4087 6707 4.202070 GGATAACACTCTAGGAGCACACTC 60.202 50.000 0.00 0.00 42.66 3.51
4088 6708 1.169577 ACACTCTAGGAGCACACTCG 58.830 55.000 0.00 0.00 44.48 4.18
4089 6709 0.179150 CACTCTAGGAGCACACTCGC 60.179 60.000 0.00 0.00 44.48 5.03
4090 6710 0.609406 ACTCTAGGAGCACACTCGCA 60.609 55.000 0.00 0.00 44.48 5.10
4091 6711 0.528017 CTCTAGGAGCACACTCGCAA 59.472 55.000 0.00 0.00 44.48 4.85
4092 6712 0.966179 TCTAGGAGCACACTCGCAAA 59.034 50.000 0.00 0.00 44.48 3.68
4093 6713 1.343142 TCTAGGAGCACACTCGCAAAA 59.657 47.619 0.00 0.00 44.48 2.44
4094 6714 2.143122 CTAGGAGCACACTCGCAAAAA 58.857 47.619 0.00 0.00 44.48 1.94
5408 8358 4.811969 AGCAATCAAAGCATGGATGAAA 57.188 36.364 0.00 0.00 0.00 2.69
5409 8359 4.501071 AGCAATCAAAGCATGGATGAAAC 58.499 39.130 0.00 0.00 0.00 2.78
5415 8365 8.461222 CAATCAAAGCATGGATGAAACTTACTA 58.539 33.333 0.00 0.00 0.00 1.82
5418 8368 5.041191 AGCATGGATGAAACTTACTAGGG 57.959 43.478 0.00 0.00 0.00 3.53
5429 8379 5.855740 AACTTACTAGGGCTCATCTGTAC 57.144 43.478 0.00 0.00 0.00 2.90
5430 8380 4.868268 ACTTACTAGGGCTCATCTGTACA 58.132 43.478 0.00 0.00 0.00 2.90
5431 8381 4.890581 ACTTACTAGGGCTCATCTGTACAG 59.109 45.833 17.17 17.17 0.00 2.74
5432 8382 3.671740 ACTAGGGCTCATCTGTACAGA 57.328 47.619 27.07 27.07 42.37 3.41
5433 8383 3.292460 ACTAGGGCTCATCTGTACAGAC 58.708 50.000 27.41 14.47 40.75 3.51
5471 8421 6.730960 TTTTGTTTAGGTGATGGTCGATAC 57.269 37.500 0.00 0.00 0.00 2.24
5472 8422 5.670792 TTGTTTAGGTGATGGTCGATACT 57.329 39.130 0.00 0.00 0.00 2.12
5473 8423 5.006153 TGTTTAGGTGATGGTCGATACTG 57.994 43.478 0.00 0.00 0.00 2.74
5474 8424 4.464951 TGTTTAGGTGATGGTCGATACTGT 59.535 41.667 0.00 0.00 0.00 3.55
5475 8425 4.913335 TTAGGTGATGGTCGATACTGTC 57.087 45.455 0.00 0.00 0.00 3.51
5476 8426 2.735151 AGGTGATGGTCGATACTGTCA 58.265 47.619 0.00 0.00 0.00 3.58
5477 8427 2.690497 AGGTGATGGTCGATACTGTCAG 59.310 50.000 0.00 0.00 0.00 3.51
5478 8428 2.464865 GTGATGGTCGATACTGTCAGC 58.535 52.381 0.00 0.00 0.00 4.26
5479 8429 1.409064 TGATGGTCGATACTGTCAGCC 59.591 52.381 0.00 0.00 0.00 4.85
5480 8430 1.409064 GATGGTCGATACTGTCAGCCA 59.591 52.381 0.00 0.00 0.00 4.75
5481 8431 1.262417 TGGTCGATACTGTCAGCCAA 58.738 50.000 0.00 0.00 0.00 4.52
5482 8432 1.621317 TGGTCGATACTGTCAGCCAAA 59.379 47.619 0.00 0.00 0.00 3.28
5483 8433 2.037902 TGGTCGATACTGTCAGCCAAAA 59.962 45.455 0.00 0.00 0.00 2.44
5484 8434 2.415512 GGTCGATACTGTCAGCCAAAAC 59.584 50.000 0.00 0.00 0.00 2.43
5485 8435 3.064207 GTCGATACTGTCAGCCAAAACA 58.936 45.455 0.00 0.00 0.00 2.83
5486 8436 3.064207 TCGATACTGTCAGCCAAAACAC 58.936 45.455 0.00 0.00 0.00 3.32
5487 8437 2.159627 CGATACTGTCAGCCAAAACACC 59.840 50.000 0.00 0.00 0.00 4.16
5488 8438 1.588674 TACTGTCAGCCAAAACACCG 58.411 50.000 0.00 0.00 0.00 4.94
5489 8439 0.107410 ACTGTCAGCCAAAACACCGA 60.107 50.000 0.00 0.00 0.00 4.69
5490 8440 0.588252 CTGTCAGCCAAAACACCGAG 59.412 55.000 0.00 0.00 0.00 4.63
5491 8441 1.282875 GTCAGCCAAAACACCGAGC 59.717 57.895 0.00 0.00 0.00 5.03
5492 8442 1.148273 TCAGCCAAAACACCGAGCT 59.852 52.632 0.00 0.00 0.00 4.09
5493 8443 0.394938 TCAGCCAAAACACCGAGCTA 59.605 50.000 0.00 0.00 31.23 3.32
5494 8444 0.798776 CAGCCAAAACACCGAGCTAG 59.201 55.000 0.00 0.00 31.23 3.42
5495 8445 0.321653 AGCCAAAACACCGAGCTAGG 60.322 55.000 11.86 11.86 37.30 3.02
5503 8453 2.569183 ACCGAGCTAGGTGTGAGAC 58.431 57.895 18.68 0.00 44.07 3.36
5504 8454 0.251209 ACCGAGCTAGGTGTGAGACA 60.251 55.000 18.68 0.00 44.07 3.41
5505 8455 0.453793 CCGAGCTAGGTGTGAGACAG 59.546 60.000 4.41 0.00 0.00 3.51
5506 8456 1.454201 CGAGCTAGGTGTGAGACAGA 58.546 55.000 0.00 0.00 0.00 3.41
5507 8457 1.400142 CGAGCTAGGTGTGAGACAGAG 59.600 57.143 0.00 0.00 0.00 3.35
5508 8458 2.717390 GAGCTAGGTGTGAGACAGAGA 58.283 52.381 0.00 0.00 0.00 3.10
5509 8459 2.682856 GAGCTAGGTGTGAGACAGAGAG 59.317 54.545 0.00 0.00 0.00 3.20
5510 8460 2.307392 AGCTAGGTGTGAGACAGAGAGA 59.693 50.000 0.00 0.00 0.00 3.10
5511 8461 2.682856 GCTAGGTGTGAGACAGAGAGAG 59.317 54.545 0.00 0.00 0.00 3.20
5512 8462 3.621214 GCTAGGTGTGAGACAGAGAGAGA 60.621 52.174 0.00 0.00 0.00 3.10
5513 8463 3.071874 AGGTGTGAGACAGAGAGAGAG 57.928 52.381 0.00 0.00 0.00 3.20
5514 8464 2.642311 AGGTGTGAGACAGAGAGAGAGA 59.358 50.000 0.00 0.00 0.00 3.10
5515 8465 2.747446 GGTGTGAGACAGAGAGAGAGAC 59.253 54.545 0.00 0.00 0.00 3.36
5516 8466 3.407698 GTGTGAGACAGAGAGAGAGACA 58.592 50.000 0.00 0.00 0.00 3.41
5517 8467 3.818210 GTGTGAGACAGAGAGAGAGACAA 59.182 47.826 0.00 0.00 0.00 3.18
5518 8468 3.818210 TGTGAGACAGAGAGAGAGACAAC 59.182 47.826 0.00 0.00 0.00 3.32
5519 8469 3.070748 TGAGACAGAGAGAGAGACAACG 58.929 50.000 0.00 0.00 0.00 4.10
5520 8470 2.418628 GAGACAGAGAGAGAGACAACGG 59.581 54.545 0.00 0.00 0.00 4.44
5521 8471 1.470890 GACAGAGAGAGAGACAACGGG 59.529 57.143 0.00 0.00 0.00 5.28
5522 8472 0.172352 CAGAGAGAGAGACAACGGGC 59.828 60.000 0.00 0.00 0.00 6.13
5523 8473 0.968393 AGAGAGAGAGACAACGGGCC 60.968 60.000 0.00 0.00 0.00 5.80
5524 8474 2.182030 GAGAGAGACAACGGGCCG 59.818 66.667 27.06 27.06 0.00 6.13
5525 8475 3.358076 GAGAGAGACAACGGGCCGG 62.358 68.421 31.78 16.15 0.00 6.13
5526 8476 3.379445 GAGAGACAACGGGCCGGA 61.379 66.667 31.78 0.00 0.00 5.14
5527 8477 3.644399 GAGAGACAACGGGCCGGAC 62.644 68.421 31.78 17.27 0.00 4.79
5603 8603 1.337071 GTCATCCCACGATCGAGCTTA 59.663 52.381 24.34 3.20 0.00 3.09
5606 8606 1.687563 TCCCACGATCGAGCTTATGA 58.312 50.000 24.34 5.22 0.00 2.15
5607 8607 2.028876 TCCCACGATCGAGCTTATGAA 58.971 47.619 24.34 0.00 0.00 2.57
5608 8608 2.628178 TCCCACGATCGAGCTTATGAAT 59.372 45.455 24.34 0.00 0.00 2.57
5609 8609 3.824443 TCCCACGATCGAGCTTATGAATA 59.176 43.478 24.34 0.00 0.00 1.75
5610 8610 4.279922 TCCCACGATCGAGCTTATGAATAA 59.720 41.667 24.34 0.00 0.00 1.40
5611 8611 5.047306 TCCCACGATCGAGCTTATGAATAAT 60.047 40.000 24.34 0.00 0.00 1.28
5612 8612 5.289675 CCCACGATCGAGCTTATGAATAATC 59.710 44.000 24.34 0.00 0.00 1.75
5613 8613 5.003872 CCACGATCGAGCTTATGAATAATCG 59.996 44.000 24.34 0.00 0.00 3.34
5614 8614 4.559251 ACGATCGAGCTTATGAATAATCGC 59.441 41.667 24.34 0.00 29.56 4.58
5615 8615 4.795795 CGATCGAGCTTATGAATAATCGCT 59.204 41.667 10.26 0.00 29.56 4.93
5616 8616 5.965918 CGATCGAGCTTATGAATAATCGCTA 59.034 40.000 10.26 0.00 29.56 4.26
5617 8617 6.469275 CGATCGAGCTTATGAATAATCGCTAA 59.531 38.462 10.26 0.00 29.56 3.09
5618 8618 6.929587 TCGAGCTTATGAATAATCGCTAAC 57.070 37.500 0.00 0.00 29.56 2.34
5619 8619 6.443792 TCGAGCTTATGAATAATCGCTAACA 58.556 36.000 0.00 0.00 29.56 2.41
5620 8620 6.582672 TCGAGCTTATGAATAATCGCTAACAG 59.417 38.462 0.00 0.00 29.56 3.16
5621 8621 6.582672 CGAGCTTATGAATAATCGCTAACAGA 59.417 38.462 0.00 0.00 0.00 3.41
5622 8622 7.201308 CGAGCTTATGAATAATCGCTAACAGAG 60.201 40.741 0.00 0.00 0.00 3.35
5623 8623 7.437748 AGCTTATGAATAATCGCTAACAGAGT 58.562 34.615 0.00 0.00 0.00 3.24
5624 8624 7.383572 AGCTTATGAATAATCGCTAACAGAGTG 59.616 37.037 0.00 0.00 36.98 3.51
5625 8625 5.914085 ATGAATAATCGCTAACAGAGTGC 57.086 39.130 0.00 0.00 35.48 4.40
5626 8626 4.119862 TGAATAATCGCTAACAGAGTGCC 58.880 43.478 0.00 0.00 35.48 5.01
5627 8627 4.141937 TGAATAATCGCTAACAGAGTGCCT 60.142 41.667 0.00 0.00 35.48 4.75
5635 8635 4.779475 CAGAGTGCCTGTTCGGTT 57.221 55.556 0.00 0.00 38.10 4.44
5636 8636 3.006672 CAGAGTGCCTGTTCGGTTT 57.993 52.632 0.00 0.00 38.10 3.27
5637 8637 0.868406 CAGAGTGCCTGTTCGGTTTC 59.132 55.000 0.00 0.00 38.10 2.78
5638 8638 0.759346 AGAGTGCCTGTTCGGTTTCT 59.241 50.000 0.00 0.00 34.25 2.52
5639 8639 1.149148 GAGTGCCTGTTCGGTTTCTC 58.851 55.000 0.00 0.00 34.25 2.87
5640 8640 0.759346 AGTGCCTGTTCGGTTTCTCT 59.241 50.000 0.00 0.00 34.25 3.10
5641 8641 1.149148 GTGCCTGTTCGGTTTCTCTC 58.851 55.000 0.00 0.00 34.25 3.20
5642 8642 0.034896 TGCCTGTTCGGTTTCTCTCC 59.965 55.000 0.00 0.00 34.25 3.71
5644 8644 1.014564 CCTGTTCGGTTTCTCTCCGC 61.015 60.000 0.00 0.00 46.49 5.54
5645 8645 0.038159 CTGTTCGGTTTCTCTCCGCT 60.038 55.000 0.00 0.00 46.49 5.52
5646 8646 0.038526 TGTTCGGTTTCTCTCCGCTC 60.039 55.000 0.00 0.00 46.49 5.03
5647 8647 0.736672 GTTCGGTTTCTCTCCGCTCC 60.737 60.000 0.00 0.00 46.49 4.70
5648 8648 1.885163 TTCGGTTTCTCTCCGCTCCC 61.885 60.000 0.00 0.00 46.49 4.30
5649 8649 2.184579 GGTTTCTCTCCGCTCCCG 59.815 66.667 0.00 0.00 0.00 5.14
5650 8650 2.509561 GTTTCTCTCCGCTCCCGC 60.510 66.667 0.00 0.00 0.00 6.13
5661 8661 4.200283 CTCCCGCGACTGAGCTCC 62.200 72.222 8.23 0.00 34.40 4.70
5665 8665 4.544689 CGCGACTGAGCTCCCGAG 62.545 72.222 19.79 14.38 34.40 4.63
5683 8683 4.463879 CGGAGCAGACTGCCCTGG 62.464 72.222 23.74 7.36 46.52 4.45
5684 8684 4.792804 GGAGCAGACTGCCCTGGC 62.793 72.222 23.74 0.00 46.52 4.85
5685 8685 4.025858 GAGCAGACTGCCCTGGCA 62.026 66.667 23.74 10.98 46.52 4.92
5694 8694 4.699626 GCCCTGGCAATGGTTTTG 57.300 55.556 2.58 0.00 41.49 2.44
5695 8695 1.003476 GCCCTGGCAATGGTTTTGG 60.003 57.895 2.58 0.00 41.49 3.28
5696 8696 1.479368 GCCCTGGCAATGGTTTTGGA 61.479 55.000 2.58 0.00 41.49 3.53
5697 8697 1.278537 CCCTGGCAATGGTTTTGGAT 58.721 50.000 0.00 0.00 0.00 3.41
5698 8698 1.065998 CCCTGGCAATGGTTTTGGATG 60.066 52.381 0.00 0.00 0.00 3.51
5699 8699 1.065998 CCTGGCAATGGTTTTGGATGG 60.066 52.381 0.00 0.00 0.00 3.51
5700 8700 0.982704 TGGCAATGGTTTTGGATGGG 59.017 50.000 0.00 0.00 0.00 4.00
5701 8701 0.392863 GGCAATGGTTTTGGATGGGC 60.393 55.000 0.00 0.00 0.00 5.36
5702 8702 0.392863 GCAATGGTTTTGGATGGGCC 60.393 55.000 0.00 0.00 37.10 5.80
5703 8703 1.278537 CAATGGTTTTGGATGGGCCT 58.721 50.000 4.53 0.00 37.63 5.19
5704 8704 2.465813 CAATGGTTTTGGATGGGCCTA 58.534 47.619 4.53 0.00 37.63 3.93
5705 8705 2.836981 CAATGGTTTTGGATGGGCCTAA 59.163 45.455 4.53 0.00 37.63 2.69
5706 8706 2.704190 TGGTTTTGGATGGGCCTAAA 57.296 45.000 4.53 0.00 38.72 1.85
5707 8707 2.977808 TGGTTTTGGATGGGCCTAAAA 58.022 42.857 4.53 4.88 41.82 1.52
5708 8708 3.318313 TGGTTTTGGATGGGCCTAAAAA 58.682 40.909 4.53 0.00 41.82 1.94
5709 8709 3.913163 TGGTTTTGGATGGGCCTAAAAAT 59.087 39.130 4.53 0.00 41.82 1.82
5710 8710 5.094387 TGGTTTTGGATGGGCCTAAAAATA 58.906 37.500 4.53 0.00 41.82 1.40
5711 8711 5.728741 TGGTTTTGGATGGGCCTAAAAATAT 59.271 36.000 4.53 0.00 41.82 1.28
5712 8712 6.054941 GGTTTTGGATGGGCCTAAAAATATG 58.945 40.000 4.53 0.00 41.82 1.78
5713 8713 5.885449 TTTGGATGGGCCTAAAAATATGG 57.115 39.130 4.53 0.00 37.63 2.74
5714 8714 3.855668 TGGATGGGCCTAAAAATATGGG 58.144 45.455 4.53 0.00 37.63 4.00
5715 8715 3.208692 TGGATGGGCCTAAAAATATGGGT 59.791 43.478 4.53 0.00 37.63 4.51
5716 8716 3.832490 GGATGGGCCTAAAAATATGGGTC 59.168 47.826 4.53 0.00 0.00 4.46
5717 8717 4.449229 GGATGGGCCTAAAAATATGGGTCT 60.449 45.833 4.53 0.00 0.00 3.85
5718 8718 3.909732 TGGGCCTAAAAATATGGGTCTG 58.090 45.455 4.53 0.00 0.00 3.51
5719 8719 3.529734 TGGGCCTAAAAATATGGGTCTGA 59.470 43.478 4.53 0.00 0.00 3.27
5720 8720 4.017037 TGGGCCTAAAAATATGGGTCTGAA 60.017 41.667 4.53 0.00 0.00 3.02
5721 8721 5.147767 GGGCCTAAAAATATGGGTCTGAAT 58.852 41.667 0.84 0.00 0.00 2.57
5722 8722 6.126038 TGGGCCTAAAAATATGGGTCTGAATA 60.126 38.462 4.53 0.00 0.00 1.75
5723 8723 6.780522 GGGCCTAAAAATATGGGTCTGAATAA 59.219 38.462 0.84 0.00 0.00 1.40
5724 8724 7.255836 GGGCCTAAAAATATGGGTCTGAATAAC 60.256 40.741 0.84 0.00 0.00 1.89
5725 8725 7.505923 GGCCTAAAAATATGGGTCTGAATAACT 59.494 37.037 0.00 0.00 0.00 2.24
5726 8726 8.352942 GCCTAAAAATATGGGTCTGAATAACTG 58.647 37.037 0.00 0.00 0.00 3.16
5727 8727 8.352942 CCTAAAAATATGGGTCTGAATAACTGC 58.647 37.037 0.00 0.00 0.00 4.40
5728 8728 6.715347 AAAATATGGGTCTGAATAACTGCC 57.285 37.500 0.00 0.00 0.00 4.85
5729 8729 5.387113 AATATGGGTCTGAATAACTGCCA 57.613 39.130 0.00 0.00 0.00 4.92
5730 8730 2.489938 TGGGTCTGAATAACTGCCAC 57.510 50.000 0.00 0.00 0.00 5.01
5731 8731 1.702401 TGGGTCTGAATAACTGCCACA 59.298 47.619 0.00 0.00 0.00 4.17
5732 8732 2.084546 GGGTCTGAATAACTGCCACAC 58.915 52.381 0.00 0.00 0.00 3.82
5733 8733 1.732259 GGTCTGAATAACTGCCACACG 59.268 52.381 0.00 0.00 0.00 4.49
5734 8734 2.413837 GTCTGAATAACTGCCACACGT 58.586 47.619 0.00 0.00 0.00 4.49
5735 8735 2.157668 GTCTGAATAACTGCCACACGTG 59.842 50.000 15.48 15.48 0.00 4.49
5736 8736 2.143122 CTGAATAACTGCCACACGTGT 58.857 47.619 17.22 17.22 0.00 4.49
5737 8737 1.870402 TGAATAACTGCCACACGTGTG 59.130 47.619 36.13 36.13 45.23 3.82
5749 8749 2.795973 CGTGTGGCGTCGATAGGA 59.204 61.111 0.00 0.00 35.54 2.94
5750 8750 1.138036 CGTGTGGCGTCGATAGGAA 59.862 57.895 0.00 0.00 35.54 3.36
5751 8751 1.138047 CGTGTGGCGTCGATAGGAAC 61.138 60.000 0.00 0.00 35.54 3.62
5752 8752 0.804933 GTGTGGCGTCGATAGGAACC 60.805 60.000 0.00 0.00 0.00 3.62
5753 8753 1.227176 GTGGCGTCGATAGGAACCC 60.227 63.158 0.00 0.00 0.00 4.11
5754 8754 2.027169 GGCGTCGATAGGAACCCG 59.973 66.667 0.00 0.00 0.00 5.28
5755 8755 2.657620 GCGTCGATAGGAACCCGC 60.658 66.667 0.00 0.00 0.00 6.13
5756 8756 2.802792 CGTCGATAGGAACCCGCA 59.197 61.111 0.00 0.00 0.00 5.69
5757 8757 1.588139 CGTCGATAGGAACCCGCAC 60.588 63.158 0.00 0.00 0.00 5.34
5758 8758 1.588139 GTCGATAGGAACCCGCACG 60.588 63.158 0.00 0.00 0.00 5.34
5759 8759 2.960129 CGATAGGAACCCGCACGC 60.960 66.667 0.00 0.00 0.00 5.34
5760 8760 2.185867 GATAGGAACCCGCACGCA 59.814 61.111 0.00 0.00 0.00 5.24
5761 8761 2.125269 ATAGGAACCCGCACGCAC 60.125 61.111 0.00 0.00 0.00 5.34
5762 8762 4.728102 TAGGAACCCGCACGCACG 62.728 66.667 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.102300 GGCGTTAAATGCCCCATGTC 59.898 55.000 8.48 0.00 44.49 3.06
93 94 3.603671 GAGCTACCTACCGGCCGG 61.604 72.222 42.17 42.17 42.03 6.13
94 95 2.831742 TGAGCTACCTACCGGCCG 60.832 66.667 21.04 21.04 0.00 6.13
95 96 2.499827 CCTGAGCTACCTACCGGCC 61.500 68.421 0.00 0.00 0.00 6.13
168 170 0.624500 ATTCCTTCCCTGGCCTGCTA 60.625 55.000 3.32 0.00 0.00 3.49
169 171 1.931007 GATTCCTTCCCTGGCCTGCT 61.931 60.000 3.32 0.00 0.00 4.24
170 172 1.454663 GATTCCTTCCCTGGCCTGC 60.455 63.158 3.32 0.00 0.00 4.85
297 299 1.795768 GCAGCACAGTACTACTTGCA 58.204 50.000 19.85 0.00 35.88 4.08
328 330 3.830178 TCCAAGTCTCCGACTATCAACAA 59.170 43.478 0.00 0.00 42.59 2.83
336 338 0.178958 ACCACTCCAAGTCTCCGACT 60.179 55.000 0.00 0.00 45.64 4.18
397 405 6.717084 AGGAAAAAGAGTGGAATTGTAGAAGG 59.283 38.462 0.00 0.00 0.00 3.46
410 418 4.464947 ACTCCAAGGAAGGAAAAAGAGTG 58.535 43.478 0.00 0.00 37.20 3.51
420 433 5.533482 CGTGATATTCTACTCCAAGGAAGG 58.467 45.833 0.00 0.00 0.00 3.46
444 457 1.754803 TGGCTCTGGTCCTAACATACG 59.245 52.381 0.00 0.00 0.00 3.06
446 459 3.031736 GAGTGGCTCTGGTCCTAACATA 58.968 50.000 0.00 0.00 0.00 2.29
479 492 5.992217 TCTCTCTCTCCAAAGTTTTTACTGC 59.008 40.000 0.00 0.00 0.00 4.40
501 3021 3.258372 TGATTGGAAGTCGCAGTAAGTCT 59.742 43.478 0.00 0.00 0.00 3.24
540 3074 1.298859 GGCTTCGACTCCGCAATGTT 61.299 55.000 0.00 0.00 35.37 2.71
563 3097 1.226773 GAACTCGCCATGCCAATGC 60.227 57.895 0.00 0.00 38.26 3.56
566 3100 1.865788 GCAAGAACTCGCCATGCCAA 61.866 55.000 0.00 0.00 0.00 4.52
567 3101 2.334946 GCAAGAACTCGCCATGCCA 61.335 57.895 0.00 0.00 0.00 4.92
589 3127 0.737219 CTGCAGCTGAGTAAATGGCC 59.263 55.000 20.43 0.00 0.00 5.36
681 3222 2.362503 ACTGGAGACGGATGGCGA 60.363 61.111 0.00 0.00 41.09 5.54
722 3264 4.856607 GAAGAGCGGGTCGGAGCG 62.857 72.222 0.96 0.00 38.61 5.03
723 3265 4.516195 GGAAGAGCGGGTCGGAGC 62.516 72.222 0.96 0.00 0.00 4.70
725 3267 2.754658 GAGGAAGAGCGGGTCGGA 60.755 66.667 0.96 0.00 0.00 4.55
753 3295 3.163655 GCACTGAAGACGCAGAGC 58.836 61.111 0.00 0.00 43.26 4.09
760 3302 0.582005 GACGTTGGTGCACTGAAGAC 59.418 55.000 17.98 7.54 0.00 3.01
761 3303 0.874175 CGACGTTGGTGCACTGAAGA 60.874 55.000 17.98 0.00 0.00 2.87
762 3304 1.564622 CGACGTTGGTGCACTGAAG 59.435 57.895 17.98 10.23 0.00 3.02
763 3305 2.530497 GCGACGTTGGTGCACTGAA 61.530 57.895 17.98 7.28 0.00 3.02
764 3306 2.964925 GCGACGTTGGTGCACTGA 60.965 61.111 17.98 2.41 0.00 3.41
765 3307 2.967076 AGCGACGTTGGTGCACTG 60.967 61.111 17.98 7.07 0.00 3.66
766 3308 2.967076 CAGCGACGTTGGTGCACT 60.967 61.111 21.19 0.00 0.00 4.40
816 3358 1.083242 GCCGGCGGTTTAATACGACA 61.083 55.000 28.82 0.00 38.20 4.35
818 3360 1.877617 CGCCGGCGGTTTAATACGA 60.878 57.895 40.50 0.00 35.56 3.43
1040 3589 3.488090 CCGGTTCTTTCGCTCCGC 61.488 66.667 0.00 0.00 41.38 5.54
1048 3597 1.599797 CGACCTTGCCCGGTTCTTT 60.600 57.895 0.00 0.00 37.42 2.52
1180 3729 1.247567 CAGGCAAAACCAAGACGGAT 58.752 50.000 0.00 0.00 43.14 4.18
1197 3746 0.035458 AGGGTTGAGAAGAACGGCAG 59.965 55.000 0.00 0.00 0.00 4.85
1203 3752 3.864789 AAGAAGCAGGGTTGAGAAGAA 57.135 42.857 0.00 0.00 0.00 2.52
1206 3755 4.536765 AGAAAAAGAAGCAGGGTTGAGAA 58.463 39.130 0.00 0.00 0.00 2.87
1245 3794 2.747855 GCCCGAAGAAGCACTGGG 60.748 66.667 0.00 0.00 43.02 4.45
1270 3819 0.445436 GACATGCTTGCAAGTCTCCG 59.555 55.000 26.55 13.62 0.00 4.63
1340 3889 4.329801 CGTGTGCTTGCTTGATCAGTAATA 59.670 41.667 0.00 0.00 0.00 0.98
1362 3911 1.692148 TAATTCGCGAAGGCAGCACG 61.692 55.000 27.20 0.00 39.92 5.34
1529 4078 2.174363 TACTCACGTCGTTCTCCAGA 57.826 50.000 0.00 0.00 0.00 3.86
1591 4150 2.440539 TCAGACGGAGAAAACAGAGC 57.559 50.000 0.00 0.00 0.00 4.09
1623 4182 1.202867 TGCCACAGTCCAGCAATTGTA 60.203 47.619 7.40 0.00 32.56 2.41
1636 4195 2.433838 CTGCGAGACCTGCCACAG 60.434 66.667 0.00 0.00 0.00 3.66
1668 4227 1.055040 GGATGGACCTCTCCTGATGG 58.945 60.000 6.46 0.00 37.48 3.51
1768 4327 7.285629 CAGTAGAACTGTAGGAGATGAATGGTA 59.714 40.741 0.00 0.00 41.19 3.25
1769 4328 6.097554 CAGTAGAACTGTAGGAGATGAATGGT 59.902 42.308 0.00 0.00 41.19 3.55
1770 4329 6.511416 CAGTAGAACTGTAGGAGATGAATGG 58.489 44.000 0.00 0.00 41.19 3.16
1852 4412 5.351233 TGACGATCGCAAGTAAATTTTGT 57.649 34.783 16.60 0.00 39.48 2.83
1867 4427 0.457851 AGTGCACTAGCCTGACGATC 59.542 55.000 20.16 0.00 41.13 3.69
1894 4454 6.590292 TGCACTGCTTCTACTCACTAAATTAC 59.410 38.462 1.98 0.00 0.00 1.89
1895 4455 6.697395 TGCACTGCTTCTACTCACTAAATTA 58.303 36.000 1.98 0.00 0.00 1.40
1896 4456 5.551233 TGCACTGCTTCTACTCACTAAATT 58.449 37.500 1.98 0.00 0.00 1.82
1897 4457 5.152623 TGCACTGCTTCTACTCACTAAAT 57.847 39.130 1.98 0.00 0.00 1.40
1906 4466 3.120060 CCTGTCAATTGCACTGCTTCTAC 60.120 47.826 0.00 0.00 0.00 2.59
1924 4484 3.557898 CCTTGTGTGCTATCTTCACCTGT 60.558 47.826 0.00 0.00 33.71 4.00
1926 4486 2.026822 CCCTTGTGTGCTATCTTCACCT 60.027 50.000 0.00 0.00 33.71 4.00
2029 4598 9.467258 CACACAACTCAAATCATACTCATTTTT 57.533 29.630 0.00 0.00 0.00 1.94
2040 4609 4.198530 TCTTCAGCACACAACTCAAATCA 58.801 39.130 0.00 0.00 0.00 2.57
2041 4610 4.274459 ACTCTTCAGCACACAACTCAAATC 59.726 41.667 0.00 0.00 0.00 2.17
2046 4615 2.286294 CACACTCTTCAGCACACAACTC 59.714 50.000 0.00 0.00 0.00 3.01
2048 4617 2.279741 TCACACTCTTCAGCACACAAC 58.720 47.619 0.00 0.00 0.00 3.32
2054 4623 4.077300 ACAAGAATCACACTCTTCAGCA 57.923 40.909 0.00 0.00 30.58 4.41
2143 4712 1.903404 TGAGAGGACGTGCTGCTCA 60.903 57.895 24.40 24.40 39.84 4.26
2191 4760 4.626081 CCCGATGATGGCCCGGAC 62.626 72.222 17.79 0.00 45.58 4.79
2219 4788 3.749954 GCATGAGCAGGGGATGAAATACT 60.750 47.826 0.00 0.00 41.58 2.12
2269 4838 1.656095 GATATTATGCTCGACTGCCGC 59.344 52.381 0.00 0.00 38.37 6.53
2272 4841 4.376819 GCACTTGATATTATGCTCGACTGC 60.377 45.833 0.00 0.00 35.16 4.40
2275 4844 5.852738 ATGCACTTGATATTATGCTCGAC 57.147 39.130 0.00 0.00 38.90 4.20
2516 5085 9.869844 GTAAATATTAGCAAGTAGAATGCACTG 57.130 33.333 0.00 0.00 46.22 3.66
2602 5204 1.636988 GACAAAATGCATGCTCCTGC 58.363 50.000 20.33 0.00 42.62 4.85
2633 5235 3.410631 TTAAATCGGCAGGTTCAGACA 57.589 42.857 0.00 0.00 0.00 3.41
2646 5248 7.895975 TCATAGCATCTCCTGATTTAAATCG 57.104 36.000 20.45 15.27 38.26 3.34
2667 5270 5.355071 TGCTCGAAAGAACTGCATTAATCAT 59.645 36.000 0.00 0.00 41.32 2.45
2681 5284 9.345517 CAATATTTGAATTTTCTGCTCGAAAGA 57.654 29.630 0.00 0.00 42.22 2.52
2687 5290 8.992835 AAGTCCAATATTTGAATTTTCTGCTC 57.007 30.769 0.00 0.00 0.00 4.26
2726 5329 6.741992 AAAAAGGCAAAACAAAGGAAGAAG 57.258 33.333 0.00 0.00 0.00 2.85
2775 5380 1.206371 GCGCCAAAGAACTACTCCCTA 59.794 52.381 0.00 0.00 0.00 3.53
2794 5399 5.181690 AGAGATGATCTTTCAGAGTACGC 57.818 43.478 0.00 0.00 32.99 4.42
2935 5540 5.471456 AGGAAGAATGACACTTGTTGATGAC 59.529 40.000 0.00 0.00 0.00 3.06
2966 5571 7.834681 TGATGTATTAGTCTCCTCACTGTTACT 59.165 37.037 0.00 0.00 0.00 2.24
3002 5607 5.643348 AGATTGAACATACTTCGACAATGCA 59.357 36.000 0.00 0.00 0.00 3.96
3085 5690 5.751680 AGCACGATAATCATCATTTTTCCG 58.248 37.500 0.00 0.00 0.00 4.30
3160 5765 2.224793 ACCTAAGCTCAAAGGAACACCC 60.225 50.000 14.80 0.00 36.66 4.61
3167 5774 2.887152 ACAAGCAACCTAAGCTCAAAGG 59.113 45.455 7.91 7.91 42.53 3.11
3246 5853 5.171476 AGAGAATTGTACACGTTGATCCAG 58.829 41.667 0.00 0.00 0.00 3.86
3287 5894 5.019785 AGAAACCAGTGTAGAGTTTTCGT 57.980 39.130 0.00 0.00 34.00 3.85
3374 5981 3.875727 CCATATGCTAGATATGCCTGCAC 59.124 47.826 12.87 0.00 36.44 4.57
3463 6070 1.668294 CAGCACTCGAGGGACAACT 59.332 57.895 21.51 2.15 0.00 3.16
3464 6071 1.374758 CCAGCACTCGAGGGACAAC 60.375 63.158 21.51 0.00 0.00 3.32
3466 6073 1.979155 CTCCAGCACTCGAGGGACA 60.979 63.158 21.51 0.00 0.00 4.02
3467 6074 1.536943 AACTCCAGCACTCGAGGGAC 61.537 60.000 21.51 10.11 0.00 4.46
3468 6075 0.832135 AAACTCCAGCACTCGAGGGA 60.832 55.000 21.51 13.39 0.00 4.20
3471 6078 5.592054 TCATTATAAACTCCAGCACTCGAG 58.408 41.667 11.84 11.84 0.00 4.04
3472 6079 5.592104 TCATTATAAACTCCAGCACTCGA 57.408 39.130 0.00 0.00 0.00 4.04
3473 6080 5.755375 ACATCATTATAAACTCCAGCACTCG 59.245 40.000 0.00 0.00 0.00 4.18
3557 6165 1.541588 GAGTGTTCAATGGAGTTGGCC 59.458 52.381 0.00 0.00 38.39 5.36
3772 6383 7.598869 CCTCAGCGTGCTAATTTGATTATACTA 59.401 37.037 0.00 0.00 0.00 1.82
3773 6384 6.425114 CCTCAGCGTGCTAATTTGATTATACT 59.575 38.462 0.00 0.00 0.00 2.12
3774 6385 6.347725 CCCTCAGCGTGCTAATTTGATTATAC 60.348 42.308 0.00 0.00 0.00 1.47
3775 6386 5.700832 CCCTCAGCGTGCTAATTTGATTATA 59.299 40.000 0.00 0.00 0.00 0.98
3776 6387 4.516698 CCCTCAGCGTGCTAATTTGATTAT 59.483 41.667 0.00 0.00 0.00 1.28
3809 6420 6.127793 AGATAGAAGGTCGTACTTACACCAT 58.872 40.000 9.34 0.57 33.03 3.55
3869 6483 4.536364 ATTTGAAGCCATCGACATTACG 57.464 40.909 0.00 0.00 0.00 3.18
3880 6494 8.498054 TGTTTTTGATGTTTTATTTGAAGCCA 57.502 26.923 0.00 0.00 0.00 4.75
3937 6551 8.531982 GCTTCCTAAAAAGGATCCTAAATGTTT 58.468 33.333 16.55 8.68 37.87 2.83
3938 6552 7.673926 TGCTTCCTAAAAAGGATCCTAAATGTT 59.326 33.333 16.55 3.43 37.87 2.71
3971 6585 7.846066 AGAAGTACTGAGTTCTTCAAGCATAT 58.154 34.615 26.51 7.89 41.75 1.78
4000 6617 5.144100 TCAAACTGAAAATTAGGGCCTTGA 58.856 37.500 13.45 0.87 0.00 3.02
4023 6640 5.939883 TCTTCCGAATTCATGAACAGTTGAT 59.060 36.000 11.07 0.00 0.00 2.57
4042 6659 4.440112 CCAGTGTTCTTGGTTTGTTCTTCC 60.440 45.833 0.00 0.00 0.00 3.46
4046 6665 4.918810 ATCCAGTGTTCTTGGTTTGTTC 57.081 40.909 0.00 0.00 0.00 3.18
4049 6668 5.299279 AGTGTTATCCAGTGTTCTTGGTTTG 59.701 40.000 0.00 0.00 0.00 2.93
4050 6669 5.445964 AGTGTTATCCAGTGTTCTTGGTTT 58.554 37.500 0.00 0.00 0.00 3.27
4073 6693 0.966179 TTTGCGAGTGTGCTCCTAGA 59.034 50.000 0.00 0.00 38.49 2.43
4074 6694 1.795768 TTTTGCGAGTGTGCTCCTAG 58.204 50.000 0.00 0.00 38.49 3.02
4075 6695 2.248280 TTTTTGCGAGTGTGCTCCTA 57.752 45.000 0.00 0.00 38.49 2.94
4076 6696 3.094386 TTTTTGCGAGTGTGCTCCT 57.906 47.368 0.00 0.00 38.49 3.69
4098 6718 9.930693 CTAATTTGACTACTCCTAGAGTGTTTT 57.069 33.333 7.51 1.63 43.30 2.43
4099 6719 8.035984 GCTAATTTGACTACTCCTAGAGTGTTT 58.964 37.037 7.51 0.00 43.30 2.83
4100 6720 7.178628 TGCTAATTTGACTACTCCTAGAGTGTT 59.821 37.037 7.51 0.00 43.30 3.32
4101 6721 6.663953 TGCTAATTTGACTACTCCTAGAGTGT 59.336 38.462 7.51 3.96 43.30 3.55
4102 6722 6.975772 GTGCTAATTTGACTACTCCTAGAGTG 59.024 42.308 7.51 0.98 43.30 3.51
4103 6723 6.663953 TGTGCTAATTTGACTACTCCTAGAGT 59.336 38.462 2.38 2.38 45.54 3.24
5368 8318 5.673337 TGCTAGTTTGAGTTTCACATCAC 57.327 39.130 0.00 0.00 0.00 3.06
5408 8358 4.868268 TGTACAGATGAGCCCTAGTAAGT 58.132 43.478 0.00 0.00 0.00 2.24
5409 8359 5.009210 GTCTGTACAGATGAGCCCTAGTAAG 59.991 48.000 27.54 0.00 39.97 2.34
5415 8365 2.238084 TGTCTGTACAGATGAGCCCT 57.762 50.000 27.54 0.00 39.97 5.19
5447 8397 6.938030 AGTATCGACCATCACCTAAACAAAAA 59.062 34.615 0.00 0.00 0.00 1.94
5448 8398 6.370442 CAGTATCGACCATCACCTAAACAAAA 59.630 38.462 0.00 0.00 0.00 2.44
5449 8399 5.872617 CAGTATCGACCATCACCTAAACAAA 59.127 40.000 0.00 0.00 0.00 2.83
5450 8400 5.046878 ACAGTATCGACCATCACCTAAACAA 60.047 40.000 0.00 0.00 0.00 2.83
5451 8401 4.464951 ACAGTATCGACCATCACCTAAACA 59.535 41.667 0.00 0.00 0.00 2.83
5452 8402 5.007385 ACAGTATCGACCATCACCTAAAC 57.993 43.478 0.00 0.00 0.00 2.01
5453 8403 4.707934 TGACAGTATCGACCATCACCTAAA 59.292 41.667 0.00 0.00 0.00 1.85
5454 8404 4.274978 TGACAGTATCGACCATCACCTAA 58.725 43.478 0.00 0.00 0.00 2.69
5455 8405 3.883489 CTGACAGTATCGACCATCACCTA 59.117 47.826 0.00 0.00 0.00 3.08
5456 8406 2.690497 CTGACAGTATCGACCATCACCT 59.310 50.000 0.00 0.00 0.00 4.00
5457 8407 2.799917 GCTGACAGTATCGACCATCACC 60.800 54.545 3.99 0.00 0.00 4.02
5458 8408 2.464865 GCTGACAGTATCGACCATCAC 58.535 52.381 3.99 0.00 0.00 3.06
5459 8409 1.409064 GGCTGACAGTATCGACCATCA 59.591 52.381 3.99 0.00 0.00 3.07
5460 8410 1.409064 TGGCTGACAGTATCGACCATC 59.591 52.381 3.99 0.00 0.00 3.51
5461 8411 1.485124 TGGCTGACAGTATCGACCAT 58.515 50.000 3.99 0.00 0.00 3.55
5462 8412 1.262417 TTGGCTGACAGTATCGACCA 58.738 50.000 3.99 0.00 0.00 4.02
5463 8413 2.380084 TTTGGCTGACAGTATCGACC 57.620 50.000 3.99 0.00 0.00 4.79
5464 8414 3.064207 TGTTTTGGCTGACAGTATCGAC 58.936 45.455 3.99 0.00 0.00 4.20
5465 8415 3.064207 GTGTTTTGGCTGACAGTATCGA 58.936 45.455 3.99 0.00 0.00 3.59
5466 8416 2.159627 GGTGTTTTGGCTGACAGTATCG 59.840 50.000 3.99 0.00 0.00 2.92
5467 8417 2.159627 CGGTGTTTTGGCTGACAGTATC 59.840 50.000 3.99 0.00 0.00 2.24
5468 8418 2.151202 CGGTGTTTTGGCTGACAGTAT 58.849 47.619 3.99 0.00 0.00 2.12
5469 8419 1.139256 TCGGTGTTTTGGCTGACAGTA 59.861 47.619 3.99 0.00 0.00 2.74
5470 8420 0.107410 TCGGTGTTTTGGCTGACAGT 60.107 50.000 3.99 0.00 0.00 3.55
5471 8421 0.588252 CTCGGTGTTTTGGCTGACAG 59.412 55.000 0.00 0.00 0.00 3.51
5472 8422 1.444119 GCTCGGTGTTTTGGCTGACA 61.444 55.000 0.00 0.00 0.00 3.58
5473 8423 1.166531 AGCTCGGTGTTTTGGCTGAC 61.167 55.000 0.00 0.00 31.68 3.51
5474 8424 0.394938 TAGCTCGGTGTTTTGGCTGA 59.605 50.000 0.00 0.00 34.88 4.26
5475 8425 0.798776 CTAGCTCGGTGTTTTGGCTG 59.201 55.000 0.00 0.00 34.88 4.85
5476 8426 0.321653 CCTAGCTCGGTGTTTTGGCT 60.322 55.000 0.00 0.00 37.08 4.75
5477 8427 0.605589 ACCTAGCTCGGTGTTTTGGC 60.606 55.000 9.53 0.00 35.52 4.52
5478 8428 3.625745 ACCTAGCTCGGTGTTTTGG 57.374 52.632 9.53 0.00 35.52 3.28
5485 8435 0.251209 TGTCTCACACCTAGCTCGGT 60.251 55.000 3.59 3.59 37.93 4.69
5486 8436 0.453793 CTGTCTCACACCTAGCTCGG 59.546 60.000 1.98 1.98 0.00 4.63
5487 8437 1.400142 CTCTGTCTCACACCTAGCTCG 59.600 57.143 0.00 0.00 0.00 5.03
5488 8438 2.682856 CTCTCTGTCTCACACCTAGCTC 59.317 54.545 0.00 0.00 0.00 4.09
5489 8439 2.307392 TCTCTCTGTCTCACACCTAGCT 59.693 50.000 0.00 0.00 0.00 3.32
5490 8440 2.682856 CTCTCTCTGTCTCACACCTAGC 59.317 54.545 0.00 0.00 0.00 3.42
5491 8441 4.081142 TCTCTCTCTCTGTCTCACACCTAG 60.081 50.000 0.00 0.00 0.00 3.02
5492 8442 3.841255 TCTCTCTCTCTGTCTCACACCTA 59.159 47.826 0.00 0.00 0.00 3.08
5493 8443 2.642311 TCTCTCTCTCTGTCTCACACCT 59.358 50.000 0.00 0.00 0.00 4.00
5494 8444 2.747446 GTCTCTCTCTCTGTCTCACACC 59.253 54.545 0.00 0.00 0.00 4.16
5495 8445 3.407698 TGTCTCTCTCTCTGTCTCACAC 58.592 50.000 0.00 0.00 0.00 3.82
5496 8446 3.778954 TGTCTCTCTCTCTGTCTCACA 57.221 47.619 0.00 0.00 0.00 3.58
5497 8447 3.120338 CGTTGTCTCTCTCTCTGTCTCAC 60.120 52.174 0.00 0.00 0.00 3.51
5498 8448 3.070748 CGTTGTCTCTCTCTCTGTCTCA 58.929 50.000 0.00 0.00 0.00 3.27
5499 8449 2.418628 CCGTTGTCTCTCTCTCTGTCTC 59.581 54.545 0.00 0.00 0.00 3.36
5500 8450 2.432444 CCGTTGTCTCTCTCTCTGTCT 58.568 52.381 0.00 0.00 0.00 3.41
5501 8451 1.470890 CCCGTTGTCTCTCTCTCTGTC 59.529 57.143 0.00 0.00 0.00 3.51
5502 8452 1.540267 CCCGTTGTCTCTCTCTCTGT 58.460 55.000 0.00 0.00 0.00 3.41
5503 8453 0.172352 GCCCGTTGTCTCTCTCTCTG 59.828 60.000 0.00 0.00 0.00 3.35
5504 8454 0.968393 GGCCCGTTGTCTCTCTCTCT 60.968 60.000 0.00 0.00 0.00 3.10
5505 8455 1.513622 GGCCCGTTGTCTCTCTCTC 59.486 63.158 0.00 0.00 0.00 3.20
5506 8456 2.344203 CGGCCCGTTGTCTCTCTCT 61.344 63.158 0.00 0.00 0.00 3.10
5507 8457 2.182030 CGGCCCGTTGTCTCTCTC 59.818 66.667 0.00 0.00 0.00 3.20
5508 8458 3.382832 CCGGCCCGTTGTCTCTCT 61.383 66.667 0.85 0.00 0.00 3.10
5509 8459 3.379445 TCCGGCCCGTTGTCTCTC 61.379 66.667 0.85 0.00 0.00 3.20
5510 8460 3.692406 GTCCGGCCCGTTGTCTCT 61.692 66.667 0.85 0.00 0.00 3.10
5511 8461 3.998672 TGTCCGGCCCGTTGTCTC 61.999 66.667 0.85 0.00 0.00 3.36
5512 8462 4.309950 GTGTCCGGCCCGTTGTCT 62.310 66.667 0.85 0.00 0.00 3.41
5513 8463 4.309950 AGTGTCCGGCCCGTTGTC 62.310 66.667 0.85 0.00 0.00 3.18
5514 8464 4.619227 CAGTGTCCGGCCCGTTGT 62.619 66.667 0.85 0.00 0.00 3.32
5515 8465 3.818121 TTCAGTGTCCGGCCCGTTG 62.818 63.158 0.85 0.00 0.00 4.10
5516 8466 3.530910 CTTCAGTGTCCGGCCCGTT 62.531 63.158 0.85 0.00 0.00 4.44
5517 8467 4.003788 CTTCAGTGTCCGGCCCGT 62.004 66.667 0.85 0.00 0.00 5.28
5518 8468 2.521958 AATCTTCAGTGTCCGGCCCG 62.522 60.000 0.00 0.00 0.00 6.13
5519 8469 0.322546 AAATCTTCAGTGTCCGGCCC 60.323 55.000 0.00 0.00 0.00 5.80
5520 8470 1.200020 CAAAATCTTCAGTGTCCGGCC 59.800 52.381 0.00 0.00 0.00 6.13
5521 8471 1.880027 ACAAAATCTTCAGTGTCCGGC 59.120 47.619 0.00 0.00 0.00 6.13
5522 8472 2.350772 GCACAAAATCTTCAGTGTCCGG 60.351 50.000 0.00 0.00 34.59 5.14
5523 8473 2.662791 CGCACAAAATCTTCAGTGTCCG 60.663 50.000 0.00 0.00 34.59 4.79
5524 8474 2.290641 ACGCACAAAATCTTCAGTGTCC 59.709 45.455 0.00 0.00 34.59 4.02
5525 8475 3.609103 ACGCACAAAATCTTCAGTGTC 57.391 42.857 0.00 0.00 34.59 3.67
5526 8476 4.370364 AAACGCACAAAATCTTCAGTGT 57.630 36.364 0.00 0.00 34.59 3.55
5527 8477 5.701029 AAAAACGCACAAAATCTTCAGTG 57.299 34.783 0.00 0.00 35.19 3.66
5550 8515 1.003233 GGGGCGAGAAGGAGAAAGAAA 59.997 52.381 0.00 0.00 0.00 2.52
5562 8527 1.681327 GGTCAGTAGTGGGGCGAGA 60.681 63.158 0.00 0.00 0.00 4.04
5603 8603 4.752101 GGCACTCTGTTAGCGATTATTCAT 59.248 41.667 0.00 0.00 0.00 2.57
5606 8606 4.122776 CAGGCACTCTGTTAGCGATTATT 58.877 43.478 0.00 0.00 34.60 1.40
5607 8607 3.722147 CAGGCACTCTGTTAGCGATTAT 58.278 45.455 0.00 0.00 34.60 1.28
5608 8608 3.165058 CAGGCACTCTGTTAGCGATTA 57.835 47.619 0.00 0.00 34.60 1.75
5609 8609 2.015736 CAGGCACTCTGTTAGCGATT 57.984 50.000 0.00 0.00 34.60 3.34
5610 8610 3.748863 CAGGCACTCTGTTAGCGAT 57.251 52.632 0.00 0.00 34.60 4.58
5619 8619 0.759346 AGAAACCGAACAGGCACTCT 59.241 50.000 0.00 0.00 46.52 3.24
5620 8620 1.149148 GAGAAACCGAACAGGCACTC 58.851 55.000 0.00 0.00 46.52 3.51
5621 8621 0.759346 AGAGAAACCGAACAGGCACT 59.241 50.000 0.00 0.00 46.52 4.40
5622 8622 1.149148 GAGAGAAACCGAACAGGCAC 58.851 55.000 0.00 0.00 46.52 5.01
5623 8623 0.034896 GGAGAGAAACCGAACAGGCA 59.965 55.000 0.00 0.00 46.52 4.75
5624 8624 2.842320 GGAGAGAAACCGAACAGGC 58.158 57.895 0.00 0.00 46.52 4.85
5632 8632 2.184579 CGGGAGCGGAGAGAAACC 59.815 66.667 0.00 0.00 0.00 3.27
5644 8644 4.200283 GGAGCTCAGTCGCGGGAG 62.200 72.222 17.19 12.46 34.40 4.30
5659 8659 4.742649 AGTCTGCTCCGCTCGGGA 62.743 66.667 8.59 0.00 44.68 5.14
5660 8660 4.504916 CAGTCTGCTCCGCTCGGG 62.505 72.222 8.59 0.74 35.59 5.14
5663 8663 4.828925 GGGCAGTCTGCTCCGCTC 62.829 72.222 23.68 6.39 44.28 5.03
5668 8668 4.025858 TGCCAGGGCAGTCTGCTC 62.026 66.667 23.68 20.83 46.33 4.26
5677 8677 1.003476 CCAAAACCATTGCCAGGGC 60.003 57.895 2.62 2.62 42.35 5.19
5678 8678 1.065998 CATCCAAAACCATTGCCAGGG 60.066 52.381 0.00 0.00 0.00 4.45
5679 8679 1.065998 CCATCCAAAACCATTGCCAGG 60.066 52.381 0.00 0.00 0.00 4.45
5680 8680 1.065998 CCCATCCAAAACCATTGCCAG 60.066 52.381 0.00 0.00 0.00 4.85
5681 8681 0.982704 CCCATCCAAAACCATTGCCA 59.017 50.000 0.00 0.00 0.00 4.92
5682 8682 0.392863 GCCCATCCAAAACCATTGCC 60.393 55.000 0.00 0.00 0.00 4.52
5683 8683 0.392863 GGCCCATCCAAAACCATTGC 60.393 55.000 0.00 0.00 34.01 3.56
5684 8684 1.278537 AGGCCCATCCAAAACCATTG 58.721 50.000 0.00 0.00 37.29 2.82
5685 8685 2.938428 TAGGCCCATCCAAAACCATT 57.062 45.000 0.00 0.00 37.29 3.16
5686 8686 2.938428 TTAGGCCCATCCAAAACCAT 57.062 45.000 0.00 0.00 37.29 3.55
5687 8687 2.704190 TTTAGGCCCATCCAAAACCA 57.296 45.000 0.00 0.00 37.29 3.67
5688 8688 4.568072 ATTTTTAGGCCCATCCAAAACC 57.432 40.909 0.00 0.00 37.29 3.27
5689 8689 6.054941 CCATATTTTTAGGCCCATCCAAAAC 58.945 40.000 0.00 0.00 37.29 2.43
5690 8690 5.131809 CCCATATTTTTAGGCCCATCCAAAA 59.868 40.000 0.00 0.00 37.29 2.44
5691 8691 4.657969 CCCATATTTTTAGGCCCATCCAAA 59.342 41.667 0.00 0.00 37.29 3.28
5692 8692 4.230455 CCCATATTTTTAGGCCCATCCAA 58.770 43.478 0.00 0.00 37.29 3.53
5693 8693 3.208692 ACCCATATTTTTAGGCCCATCCA 59.791 43.478 0.00 0.00 37.29 3.41
5694 8694 3.832490 GACCCATATTTTTAGGCCCATCC 59.168 47.826 0.00 0.00 0.00 3.51
5695 8695 4.524328 CAGACCCATATTTTTAGGCCCATC 59.476 45.833 0.00 0.00 0.00 3.51
5696 8696 4.169856 TCAGACCCATATTTTTAGGCCCAT 59.830 41.667 0.00 0.00 0.00 4.00
5697 8697 3.529734 TCAGACCCATATTTTTAGGCCCA 59.470 43.478 0.00 0.00 0.00 5.36
5698 8698 4.178956 TCAGACCCATATTTTTAGGCCC 57.821 45.455 0.00 0.00 0.00 5.80
5699 8699 7.505923 AGTTATTCAGACCCATATTTTTAGGCC 59.494 37.037 0.00 0.00 0.00 5.19
5700 8700 8.352942 CAGTTATTCAGACCCATATTTTTAGGC 58.647 37.037 0.00 0.00 0.00 3.93
5701 8701 8.352942 GCAGTTATTCAGACCCATATTTTTAGG 58.647 37.037 0.00 0.00 0.00 2.69
5702 8702 8.352942 GGCAGTTATTCAGACCCATATTTTTAG 58.647 37.037 0.00 0.00 0.00 1.85
5703 8703 7.836685 TGGCAGTTATTCAGACCCATATTTTTA 59.163 33.333 0.00 0.00 0.00 1.52
5704 8704 6.667414 TGGCAGTTATTCAGACCCATATTTTT 59.333 34.615 0.00 0.00 0.00 1.94
5705 8705 6.096846 GTGGCAGTTATTCAGACCCATATTTT 59.903 38.462 0.00 0.00 0.00 1.82
5706 8706 5.594317 GTGGCAGTTATTCAGACCCATATTT 59.406 40.000 0.00 0.00 0.00 1.40
5707 8707 5.133221 GTGGCAGTTATTCAGACCCATATT 58.867 41.667 0.00 0.00 0.00 1.28
5708 8708 4.165950 TGTGGCAGTTATTCAGACCCATAT 59.834 41.667 0.00 0.00 0.00 1.78
5709 8709 3.521531 TGTGGCAGTTATTCAGACCCATA 59.478 43.478 0.00 0.00 0.00 2.74
5710 8710 2.308570 TGTGGCAGTTATTCAGACCCAT 59.691 45.455 0.00 0.00 0.00 4.00
5711 8711 1.702401 TGTGGCAGTTATTCAGACCCA 59.298 47.619 0.00 0.00 0.00 4.51
5712 8712 2.084546 GTGTGGCAGTTATTCAGACCC 58.915 52.381 0.00 0.00 0.00 4.46
5713 8713 1.732259 CGTGTGGCAGTTATTCAGACC 59.268 52.381 0.00 0.00 0.00 3.85
5714 8714 2.157668 CACGTGTGGCAGTTATTCAGAC 59.842 50.000 7.58 0.00 0.00 3.51
5715 8715 2.224185 ACACGTGTGGCAGTTATTCAGA 60.224 45.455 22.71 0.00 34.19 3.27
5716 8716 2.096268 CACACGTGTGGCAGTTATTCAG 60.096 50.000 35.65 9.89 42.10 3.02
5717 8717 1.870402 CACACGTGTGGCAGTTATTCA 59.130 47.619 35.65 0.00 42.10 2.57
5718 8718 2.594529 CACACGTGTGGCAGTTATTC 57.405 50.000 35.65 0.00 42.10 1.75
5733 8733 0.804933 GGTTCCTATCGACGCCACAC 60.805 60.000 0.00 0.00 0.00 3.82
5734 8734 1.514087 GGTTCCTATCGACGCCACA 59.486 57.895 0.00 0.00 0.00 4.17
5735 8735 1.227176 GGGTTCCTATCGACGCCAC 60.227 63.158 0.00 0.00 0.00 5.01
5736 8736 2.777972 CGGGTTCCTATCGACGCCA 61.778 63.158 0.00 0.00 0.00 5.69
5737 8737 2.027169 CGGGTTCCTATCGACGCC 59.973 66.667 0.00 0.00 0.00 5.68
5738 8738 2.657620 GCGGGTTCCTATCGACGC 60.658 66.667 0.00 0.00 40.19 5.19
5739 8739 1.588139 GTGCGGGTTCCTATCGACG 60.588 63.158 0.00 0.00 0.00 5.12
5740 8740 1.588139 CGTGCGGGTTCCTATCGAC 60.588 63.158 0.00 0.00 0.00 4.20
5741 8741 2.802792 CGTGCGGGTTCCTATCGA 59.197 61.111 0.00 0.00 0.00 3.59
5742 8742 2.960129 GCGTGCGGGTTCCTATCG 60.960 66.667 0.00 0.00 0.00 2.92
5743 8743 2.171725 GTGCGTGCGGGTTCCTATC 61.172 63.158 0.00 0.00 0.00 2.08
5744 8744 2.125269 GTGCGTGCGGGTTCCTAT 60.125 61.111 0.00 0.00 0.00 2.57
5745 8745 4.728102 CGTGCGTGCGGGTTCCTA 62.728 66.667 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.