Multiple sequence alignment - TraesCS1B01G233400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G233400 chr1B 100.000 5328 0 0 1 5328 419199829 419194502 0.000000e+00 9840
1 TraesCS1B01G233400 chr1B 84.644 547 78 6 5 546 679234311 679233766 1.690000e-149 540
2 TraesCS1B01G233400 chr1B 84.512 523 75 6 1 520 302230964 302230445 3.680000e-141 512
3 TraesCS1B01G233400 chr1A 94.032 4759 215 39 630 5328 388945295 388940546 0.000000e+00 7151
4 TraesCS1B01G233400 chr1D 94.467 4338 162 34 1027 5328 309460101 309455806 0.000000e+00 6610
5 TraesCS1B01G233400 chr1D 84.866 337 18 7 632 964 309460697 309460390 5.180000e-80 309
6 TraesCS1B01G233400 chrUn 85.255 529 75 3 1 529 223002233 223001708 4.690000e-150 542
7 TraesCS1B01G233400 chr3D 85.057 522 76 2 1 522 29493886 29493367 1.020000e-146 531
8 TraesCS1B01G233400 chr3D 84.866 522 77 2 1 522 29565755 29565236 4.730000e-145 525
9 TraesCS1B01G233400 chr3D 84.674 522 78 2 1 522 29528815 29528296 2.200000e-143 520
10 TraesCS1B01G233400 chr2B 84.866 522 74 5 2 521 741121924 741122442 6.110000e-144 521
11 TraesCS1B01G233400 chr6D 84.688 529 71 9 8 529 431855008 431854483 2.200000e-143 520
12 TraesCS1B01G233400 chr6D 83.932 529 77 4 8 532 451958211 451957687 2.870000e-137 499
13 TraesCS1B01G233400 chr3A 88.945 199 21 1 2608 2806 205702260 205702063 1.480000e-60 244
14 TraesCS1B01G233400 chr3A 88.500 200 22 1 2608 2807 205699774 205699576 1.920000e-59 241
15 TraesCS1B01G233400 chr4B 83.806 247 33 6 2564 2805 346196553 346196797 1.490000e-55 228
16 TraesCS1B01G233400 chr4B 85.354 198 28 1 2608 2805 325306760 325306956 2.520000e-48 204
17 TraesCS1B01G233400 chr4A 87.958 191 22 1 2608 2798 570578623 570578812 1.930000e-54 224
18 TraesCS1B01G233400 chr3B 83.468 248 33 3 2564 2805 322218661 322218906 1.930000e-54 224
19 TraesCS1B01G233400 chr6B 82.661 248 35 3 2564 2805 169140714 169140959 4.180000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G233400 chr1B 419194502 419199829 5327 True 9840.0 9840 100.0000 1 5328 1 chr1B.!!$R2 5327
1 TraesCS1B01G233400 chr1B 679233766 679234311 545 True 540.0 540 84.6440 5 546 1 chr1B.!!$R3 541
2 TraesCS1B01G233400 chr1B 302230445 302230964 519 True 512.0 512 84.5120 1 520 1 chr1B.!!$R1 519
3 TraesCS1B01G233400 chr1A 388940546 388945295 4749 True 7151.0 7151 94.0320 630 5328 1 chr1A.!!$R1 4698
4 TraesCS1B01G233400 chr1D 309455806 309460697 4891 True 3459.5 6610 89.6665 632 5328 2 chr1D.!!$R1 4696
5 TraesCS1B01G233400 chrUn 223001708 223002233 525 True 542.0 542 85.2550 1 529 1 chrUn.!!$R1 528
6 TraesCS1B01G233400 chr3D 29493367 29493886 519 True 531.0 531 85.0570 1 522 1 chr3D.!!$R1 521
7 TraesCS1B01G233400 chr3D 29565236 29565755 519 True 525.0 525 84.8660 1 522 1 chr3D.!!$R3 521
8 TraesCS1B01G233400 chr3D 29528296 29528815 519 True 520.0 520 84.6740 1 522 1 chr3D.!!$R2 521
9 TraesCS1B01G233400 chr2B 741121924 741122442 518 False 521.0 521 84.8660 2 521 1 chr2B.!!$F1 519
10 TraesCS1B01G233400 chr6D 431854483 431855008 525 True 520.0 520 84.6880 8 529 1 chr6D.!!$R1 521
11 TraesCS1B01G233400 chr6D 451957687 451958211 524 True 499.0 499 83.9320 8 532 1 chr6D.!!$R2 524
12 TraesCS1B01G233400 chr3A 205699576 205702260 2684 True 242.5 244 88.7225 2608 2807 2 chr3A.!!$R1 199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 464 0.039035 TGAAAATCCAAGGTCCCCCG 59.961 55.000 0.00 0.0 35.12 5.73 F
574 585 0.179051 GAGGCTTGAGCTGGATCAGG 60.179 60.000 0.00 0.0 41.70 3.86 F
577 588 0.467384 GCTTGAGCTGGATCAGGCTA 59.533 55.000 14.07 0.0 45.85 3.93 F
1004 1025 0.474660 CCCCCAAAATTCCCCACCAA 60.475 55.000 0.00 0.0 0.00 3.67 F
1494 1736 1.209019 GGCTCCAAGCTTCATCTCTCA 59.791 52.381 0.00 0.0 41.99 3.27 F
2707 2955 1.211743 GCTGTTTTGCTGCTGTTTCC 58.788 50.000 0.00 0.0 38.75 3.13 F
3466 3830 0.326264 ACTGTTGCTAAGGGCTGAGG 59.674 55.000 0.00 0.0 42.39 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 1818 0.530744 TTCGAAGTGGAGGTCGATGG 59.469 55.000 0.00 0.0 45.03 3.51 R
2041 2283 1.624336 AACACATTGCCTGCATCAGT 58.376 45.000 0.00 0.0 0.00 3.41 R
2115 2357 2.359981 ATGGTCTCTGCATCAATGGG 57.640 50.000 0.00 0.0 0.00 4.00 R
2933 3181 2.597578 TCCAGTACCAGAGTGCACTA 57.402 50.000 21.73 0.0 0.00 2.74 R
3133 3497 1.740296 CAAGTTGTAGGCCCCGTCG 60.740 63.158 0.00 0.0 0.00 5.12 R
3639 4003 0.486879 TTTTCCCTGGGCTTGGATGT 59.513 50.000 8.22 0.0 0.00 3.06 R
5279 6931 0.249868 CGTTTGTGTGGCTCTGAGGA 60.250 55.000 6.83 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.915175 ACTCCAAAGACTTCGTTAAAGAGT 58.085 37.500 0.00 0.00 38.44 3.24
92 93 1.327303 GCCATTCTTTCACCCACACA 58.673 50.000 0.00 0.00 0.00 3.72
98 99 4.647424 TTCTTTCACCCACACAAACATC 57.353 40.909 0.00 0.00 0.00 3.06
139 140 0.738975 CGTCTTGAGTCGCCCATCTA 59.261 55.000 0.00 0.00 0.00 1.98
172 173 6.839820 GGAAACCTTAATCGATGAACGTAT 57.160 37.500 0.00 0.00 43.13 3.06
177 178 6.110707 ACCTTAATCGATGAACGTATTTGGT 58.889 36.000 0.00 0.00 43.13 3.67
181 182 3.577667 TCGATGAACGTATTTGGTTCGT 58.422 40.909 0.00 0.00 45.19 3.85
191 192 2.869101 TTTGGTTCGTGGATGATCCA 57.131 45.000 10.75 10.75 45.98 3.41
202 203 3.732212 TGGATGATCCACTAGAAATGCG 58.268 45.455 10.75 0.00 42.67 4.73
203 204 3.134623 TGGATGATCCACTAGAAATGCGT 59.865 43.478 10.75 0.00 42.67 5.24
204 205 4.343814 TGGATGATCCACTAGAAATGCGTA 59.656 41.667 10.75 0.00 42.67 4.42
231 232 6.863645 CGTCGAATCACTATATCTTCACCATT 59.136 38.462 0.00 0.00 0.00 3.16
306 309 5.984627 TGACACAACAACATAAACTCATCG 58.015 37.500 0.00 0.00 0.00 3.84
335 338 2.898729 AATCGAATCTGCGAGGACAT 57.101 45.000 0.00 0.00 44.26 3.06
392 395 6.969828 ACGAGAGGAAATTTATTCTCACAC 57.030 37.500 21.83 11.30 36.68 3.82
393 396 5.577164 ACGAGAGGAAATTTATTCTCACACG 59.423 40.000 21.83 19.11 36.68 4.49
397 400 6.814146 AGAGGAAATTTATTCTCACACGACTC 59.186 38.462 14.24 0.00 0.00 3.36
404 407 3.839051 TTCTCACACGACTCTGATGAG 57.161 47.619 0.00 0.00 45.43 2.90
410 413 2.162608 ACACGACTCTGATGAGCACTAC 59.837 50.000 0.00 0.00 43.85 2.73
413 416 2.421775 CGACTCTGATGAGCACTACACT 59.578 50.000 0.00 0.00 43.85 3.55
445 451 9.838339 GAAGAATATAGAGGTCTTGAAAATCCA 57.162 33.333 0.00 0.00 31.80 3.41
450 456 4.657013 AGAGGTCTTGAAAATCCAAGGTC 58.343 43.478 0.00 0.00 42.72 3.85
455 464 0.039035 TGAAAATCCAAGGTCCCCCG 59.961 55.000 0.00 0.00 35.12 5.73
539 550 2.349155 GGCAACGACAAGTAGAAAACCG 60.349 50.000 0.00 0.00 0.00 4.44
546 557 6.196571 ACGACAAGTAGAAAACCGATTTTTG 58.803 36.000 0.00 0.00 38.17 2.44
547 558 6.183360 ACGACAAGTAGAAAACCGATTTTTGT 60.183 34.615 0.00 0.00 38.17 2.83
548 559 6.689669 CGACAAGTAGAAAACCGATTTTTGTT 59.310 34.615 0.00 0.00 38.17 2.83
549 560 7.219344 CGACAAGTAGAAAACCGATTTTTGTTT 59.781 33.333 0.00 0.00 38.17 2.83
550 561 8.180317 ACAAGTAGAAAACCGATTTTTGTTTG 57.820 30.769 0.00 0.00 38.17 2.93
551 562 7.276878 ACAAGTAGAAAACCGATTTTTGTTTGG 59.723 33.333 0.00 0.00 38.17 3.28
552 563 6.277605 AGTAGAAAACCGATTTTTGTTTGGG 58.722 36.000 0.00 0.00 38.17 4.12
553 564 5.092554 AGAAAACCGATTTTTGTTTGGGT 57.907 34.783 0.00 0.00 38.17 4.51
554 565 5.113383 AGAAAACCGATTTTTGTTTGGGTC 58.887 37.500 0.00 0.00 38.17 4.46
555 566 2.785713 ACCGATTTTTGTTTGGGTCG 57.214 45.000 0.00 0.00 0.00 4.79
556 567 2.299521 ACCGATTTTTGTTTGGGTCGA 58.700 42.857 0.00 0.00 0.00 4.20
557 568 2.292292 ACCGATTTTTGTTTGGGTCGAG 59.708 45.455 0.00 0.00 0.00 4.04
558 569 2.351350 CCGATTTTTGTTTGGGTCGAGG 60.351 50.000 0.00 0.00 0.00 4.63
559 570 2.672714 GATTTTTGTTTGGGTCGAGGC 58.327 47.619 0.00 0.00 0.00 4.70
560 571 1.770294 TTTTTGTTTGGGTCGAGGCT 58.230 45.000 0.00 0.00 0.00 4.58
561 572 1.770294 TTTTGTTTGGGTCGAGGCTT 58.230 45.000 0.00 0.00 0.00 4.35
562 573 1.028905 TTTGTTTGGGTCGAGGCTTG 58.971 50.000 0.00 0.00 0.00 4.01
563 574 0.181587 TTGTTTGGGTCGAGGCTTGA 59.818 50.000 0.00 0.00 0.00 3.02
564 575 0.250295 TGTTTGGGTCGAGGCTTGAG 60.250 55.000 4.21 0.00 0.00 3.02
565 576 1.302511 TTTGGGTCGAGGCTTGAGC 60.303 57.895 22.90 22.90 41.14 4.26
566 577 1.768684 TTTGGGTCGAGGCTTGAGCT 61.769 55.000 27.92 0.00 41.70 4.09
567 578 2.125350 GGGTCGAGGCTTGAGCTG 60.125 66.667 27.92 0.00 41.70 4.24
568 579 2.125350 GGTCGAGGCTTGAGCTGG 60.125 66.667 23.51 0.00 41.70 4.85
569 580 2.650116 GGTCGAGGCTTGAGCTGGA 61.650 63.158 23.51 0.00 41.70 3.86
570 581 1.519719 GTCGAGGCTTGAGCTGGAT 59.480 57.895 4.21 0.00 41.70 3.41
571 582 0.529555 GTCGAGGCTTGAGCTGGATC 60.530 60.000 4.21 0.00 41.70 3.36
572 583 0.972471 TCGAGGCTTGAGCTGGATCA 60.972 55.000 0.00 0.00 41.70 2.92
573 584 0.530211 CGAGGCTTGAGCTGGATCAG 60.530 60.000 0.00 0.00 41.70 2.90
574 585 0.179051 GAGGCTTGAGCTGGATCAGG 60.179 60.000 0.00 0.00 41.70 3.86
575 586 3.824810 GCTTGAGCTGGATCAGGC 58.175 61.111 7.15 7.15 43.76 4.85
576 587 1.224039 GCTTGAGCTGGATCAGGCT 59.776 57.895 14.07 10.73 45.85 4.58
577 588 0.467384 GCTTGAGCTGGATCAGGCTA 59.533 55.000 14.07 0.00 45.85 3.93
578 589 1.540797 GCTTGAGCTGGATCAGGCTAG 60.541 57.143 14.07 7.74 45.85 3.42
579 590 1.070445 CTTGAGCTGGATCAGGCTAGG 59.930 57.143 10.87 2.73 39.05 3.02
580 591 0.762082 TGAGCTGGATCAGGCTAGGG 60.762 60.000 10.87 0.00 39.05 3.53
581 592 2.110757 GAGCTGGATCAGGCTAGGGC 62.111 65.000 10.87 0.00 39.05 5.19
582 593 2.146061 GCTGGATCAGGCTAGGGCT 61.146 63.158 0.00 0.00 39.66 5.19
591 602 3.503363 GCTAGGGCTGTGCGCAAG 61.503 66.667 14.00 13.46 44.06 4.01
592 603 2.821366 CTAGGGCTGTGCGCAAGG 60.821 66.667 14.00 9.34 44.06 3.61
593 604 3.612247 CTAGGGCTGTGCGCAAGGT 62.612 63.158 14.00 0.00 44.06 3.50
594 605 2.238847 CTAGGGCTGTGCGCAAGGTA 62.239 60.000 14.00 0.00 44.06 3.08
595 606 1.622607 TAGGGCTGTGCGCAAGGTAT 61.623 55.000 14.00 0.00 44.06 2.73
596 607 1.153249 GGGCTGTGCGCAAGGTATA 60.153 57.895 14.00 0.00 41.23 1.47
597 608 0.746563 GGGCTGTGCGCAAGGTATAA 60.747 55.000 14.00 0.00 41.23 0.98
598 609 1.091537 GGCTGTGCGCAAGGTATAAA 58.908 50.000 14.00 0.00 41.67 1.40
599 610 1.202143 GGCTGTGCGCAAGGTATAAAC 60.202 52.381 14.00 0.00 41.67 2.01
600 611 1.737793 GCTGTGCGCAAGGTATAAACT 59.262 47.619 14.00 0.00 38.92 2.66
601 612 2.161609 GCTGTGCGCAAGGTATAAACTT 59.838 45.455 14.00 0.00 38.92 2.66
602 613 3.747193 CTGTGCGCAAGGTATAAACTTG 58.253 45.455 14.00 12.00 46.15 3.16
603 614 2.486203 TGTGCGCAAGGTATAAACTTGG 59.514 45.455 14.00 9.76 44.16 3.61
605 616 2.844122 CGCAAGGTATAAACTTGGGC 57.156 50.000 17.01 6.61 46.81 5.36
606 617 2.365582 CGCAAGGTATAAACTTGGGCT 58.634 47.619 17.01 0.00 46.81 5.19
607 618 2.097466 CGCAAGGTATAAACTTGGGCTG 59.903 50.000 17.01 0.00 46.81 4.85
608 619 2.427095 GCAAGGTATAAACTTGGGCTGG 59.573 50.000 16.06 0.00 44.16 4.85
609 620 3.023832 CAAGGTATAAACTTGGGCTGGG 58.976 50.000 9.50 0.00 41.16 4.45
610 621 1.063942 AGGTATAAACTTGGGCTGGGC 60.064 52.381 0.00 0.00 0.00 5.36
626 637 2.900273 GCCACAGGCCTCGACATA 59.100 61.111 0.00 0.00 44.06 2.29
627 638 1.220749 GCCACAGGCCTCGACATAA 59.779 57.895 0.00 0.00 44.06 1.90
628 639 0.811616 GCCACAGGCCTCGACATAAG 60.812 60.000 0.00 0.00 44.06 1.73
657 668 1.305213 GGAGCCCAGCCCAATTCAA 60.305 57.895 0.00 0.00 0.00 2.69
692 703 1.024271 TTCAAGCCAACACACAGCTC 58.976 50.000 0.00 0.00 35.30 4.09
718 729 2.548295 CCGTCCCACAAACCCAACG 61.548 63.158 0.00 0.00 0.00 4.10
722 733 3.972276 CCACAAACCCAACGCCGG 61.972 66.667 0.00 0.00 0.00 6.13
733 744 3.936772 AACGCCGGGCCACATCATT 62.937 57.895 14.55 0.00 0.00 2.57
741 752 2.036217 CGGGCCACATCATTATTGCATT 59.964 45.455 4.39 0.00 0.00 3.56
759 770 3.118884 GCATTACTCGACCCAAGACCTTA 60.119 47.826 0.00 0.00 0.00 2.69
779 791 1.748879 CCGCAACCATACCCACCAG 60.749 63.158 0.00 0.00 0.00 4.00
786 799 2.040606 ATACCCACCAGAGGCGGT 59.959 61.111 0.00 0.00 41.07 5.68
810 823 4.035102 GCACCCTCTGGACCCACC 62.035 72.222 0.00 0.00 39.54 4.61
834 847 1.214589 GCGAGGCGGTCTAGTTCAA 59.785 57.895 0.00 0.00 0.00 2.69
835 848 1.077089 GCGAGGCGGTCTAGTTCAAC 61.077 60.000 0.00 0.00 0.00 3.18
842 855 1.402456 CGGTCTAGTTCAACCTGACGG 60.402 57.143 4.93 4.71 33.14 4.79
843 856 1.891150 GGTCTAGTTCAACCTGACGGA 59.109 52.381 4.93 0.00 32.54 4.69
844 857 2.094649 GGTCTAGTTCAACCTGACGGAG 60.095 54.545 4.93 0.00 32.54 4.63
912 926 1.533965 GGCGCCATTTCCGAAATCTTC 60.534 52.381 24.80 0.00 0.00 2.87
931 945 4.396166 TCTTCGAAAGCTCCATTCCAATTC 59.604 41.667 0.00 0.00 0.00 2.17
934 948 2.806945 AAGCTCCATTCCAATTCCGA 57.193 45.000 0.00 0.00 0.00 4.55
1003 1024 1.159664 CCCCCAAAATTCCCCACCA 59.840 57.895 0.00 0.00 0.00 4.17
1004 1025 0.474660 CCCCCAAAATTCCCCACCAA 60.475 55.000 0.00 0.00 0.00 3.67
1344 1586 3.893763 CTCGTCGCCATCTCCGCT 61.894 66.667 0.00 0.00 0.00 5.52
1419 1661 2.586773 GCTCGGTTTCGCGCTATCC 61.587 63.158 5.56 1.59 42.99 2.59
1494 1736 1.209019 GGCTCCAAGCTTCATCTCTCA 59.791 52.381 0.00 0.00 41.99 3.27
1794 2036 2.200067 CTGCATCGGAATGTCAGAGAC 58.800 52.381 0.00 0.00 38.35 3.36
1824 2066 2.203126 GCTGGATCCTTCAGGCGG 60.203 66.667 14.23 0.00 33.16 6.13
1901 2143 2.383527 CGCTGCCTGTTCGGACTTC 61.384 63.158 0.00 0.00 33.16 3.01
1942 2184 2.783828 ACTGTCACTTCTGTCTCGTG 57.216 50.000 0.00 0.00 0.00 4.35
2019 2261 6.209192 TGAAGCTGTTGGTGATGTATTTGAAT 59.791 34.615 0.00 0.00 0.00 2.57
2115 2357 2.125106 CCCGCTGGCTACTGGAAC 60.125 66.667 0.00 0.00 0.00 3.62
2317 2559 3.435327 TGTGAATTGCGTTAGTGATGGAC 59.565 43.478 0.00 0.00 0.00 4.02
2319 2561 4.068599 TGAATTGCGTTAGTGATGGACAA 58.931 39.130 0.00 0.00 0.00 3.18
2479 2721 6.266168 TGCAAATGGTATCAAAGGTTAGTG 57.734 37.500 0.00 0.00 0.00 2.74
2528 2770 5.954150 AGAAGTATGCCCAACTTTGAATCAT 59.046 36.000 0.00 0.00 37.31 2.45
2531 2773 8.995027 AAGTATGCCCAACTTTGAATCATATA 57.005 30.769 0.00 0.00 33.39 0.86
2532 2774 8.995027 AGTATGCCCAACTTTGAATCATATAA 57.005 30.769 0.00 0.00 0.00 0.98
2533 2775 8.850156 AGTATGCCCAACTTTGAATCATATAAC 58.150 33.333 0.00 0.00 0.00 1.89
2629 2877 9.013229 TGCTAAGTTTTACTCAAATCATGACAT 57.987 29.630 0.00 0.00 33.47 3.06
2706 2954 1.925229 TGCTGTTTTGCTGCTGTTTC 58.075 45.000 0.00 0.00 41.79 2.78
2707 2955 1.211743 GCTGTTTTGCTGCTGTTTCC 58.788 50.000 0.00 0.00 38.75 3.13
2751 2999 2.847449 TGGGTTCCTCGGAATTATTGGA 59.153 45.455 1.13 0.00 36.45 3.53
2933 3181 5.473162 GCAAGCACCTATTTTTGGGATTTTT 59.527 36.000 0.00 0.00 0.00 1.94
2945 3193 3.420893 TGGGATTTTTAGTGCACTCTGG 58.579 45.455 25.56 0.00 0.00 3.86
2946 3194 3.181434 TGGGATTTTTAGTGCACTCTGGT 60.181 43.478 25.56 7.02 0.00 4.00
2962 3210 6.821665 GCACTCTGGTACTGGATTTTATGTAA 59.178 38.462 0.00 0.00 0.00 2.41
3027 3391 9.937175 GTGTTTCTAATCTAACTTTGATATGCC 57.063 33.333 0.00 0.00 0.00 4.40
3133 3497 6.152379 CCTAAGGCTTTTCAGTTTTGATGAC 58.848 40.000 4.45 0.00 32.27 3.06
3254 3618 9.774742 CTGTTTCTATAACCATAAGCAGTTTTC 57.225 33.333 0.00 0.00 0.00 2.29
3259 3623 8.038944 TCTATAACCATAAGCAGTTTTCGAAGT 58.961 33.333 0.00 0.00 0.00 3.01
3266 3630 7.221838 CCATAAGCAGTTTTCGAAGTTGAAAAA 59.778 33.333 7.82 2.68 46.19 1.94
3271 3635 6.693113 GCAGTTTTCGAAGTTGAAAAATCTCT 59.307 34.615 7.82 0.10 46.19 3.10
3364 3728 8.696043 TTCTATGGTTGATTATTAATGCTGCT 57.304 30.769 0.00 0.00 0.00 4.24
3466 3830 0.326264 ACTGTTGCTAAGGGCTGAGG 59.674 55.000 0.00 0.00 42.39 3.86
3639 4003 5.357878 ACGTGGTGATCTATTCGTACCTAAA 59.642 40.000 0.00 0.00 32.68 1.85
3648 4012 6.278363 TCTATTCGTACCTAAACATCCAAGC 58.722 40.000 0.00 0.00 0.00 4.01
3765 4129 5.314923 TGATATGTTTTTCAGCTTGGCTC 57.685 39.130 0.00 0.00 36.40 4.70
3912 4276 1.862827 GTCGGTGTCTTTACGTTGCTT 59.137 47.619 0.00 0.00 0.00 3.91
3920 4284 3.805971 GTCTTTACGTTGCTTACTGTGGT 59.194 43.478 0.00 0.00 0.00 4.16
4106 4470 3.664107 TCTGCGAGTAATTGCTCAAACT 58.336 40.909 21.37 0.12 35.33 2.66
4267 4631 2.146342 CGTGAGTGGTTTCTTCATGCT 58.854 47.619 0.00 0.00 0.00 3.79
4293 4657 4.396166 CCTGTAGTACAAATTTCTGCCAGG 59.604 45.833 4.21 9.53 0.00 4.45
4307 4671 1.256812 GCCAGGCATAACTTTGGTGT 58.743 50.000 6.55 0.00 33.21 4.16
4311 4675 4.331968 CCAGGCATAACTTTGGTGTAAGA 58.668 43.478 0.00 0.00 0.00 2.10
4380 4777 9.811995 ATCTGGATATCACATTTTCAATTGTTG 57.188 29.630 5.13 2.59 0.00 3.33
4382 4779 8.984891 TGGATATCACATTTTCAATTGTTGTC 57.015 30.769 5.13 0.00 0.00 3.18
4393 4790 4.825422 TCAATTGTTGTCCTAGCAGAGAG 58.175 43.478 5.13 0.00 0.00 3.20
4443 4846 2.191128 AGTGGCAATGTCCTCTGTTC 57.809 50.000 0.00 0.00 0.00 3.18
4480 4884 2.555757 AGGATGCTCTGTGCTGTTTTTC 59.444 45.455 3.20 0.00 43.37 2.29
4484 4888 0.593128 CTCTGTGCTGTTTTTCCCCG 59.407 55.000 0.00 0.00 0.00 5.73
4520 4924 1.584380 GCAGTTGCAGGCTGGAGAAG 61.584 60.000 17.64 7.89 41.59 2.85
4528 4932 1.140312 AGGCTGGAGAAGGTTTCACA 58.860 50.000 0.00 0.00 0.00 3.58
4548 4952 2.945008 CACTTGCTGGTGAAAGACTGAA 59.055 45.455 4.08 0.00 39.34 3.02
4560 4964 5.657302 GTGAAAGACTGAATACCCTAGGAGA 59.343 44.000 11.48 0.00 0.00 3.71
4612 5016 3.849911 TCCGTTCTCATGTCAAGCTAAG 58.150 45.455 0.00 0.00 0.00 2.18
4627 5031 7.552687 TGTCAAGCTAAGTCAAAATAGGTATGG 59.447 37.037 0.00 0.00 30.19 2.74
4728 5671 8.756864 GGTATTCTCATTTTGTTTTTAACGCAA 58.243 29.630 0.00 0.00 0.00 4.85
4782 5725 5.122396 ACTTTTGCAGCCTTCTAGATTTACG 59.878 40.000 0.00 0.00 0.00 3.18
4790 5733 3.325135 CCTTCTAGATTTACGCAGGGGAT 59.675 47.826 0.00 0.00 0.00 3.85
4821 5765 9.739276 TTACTTACTGCTAGTAGTTAACACCTA 57.261 33.333 19.04 6.27 31.47 3.08
4831 5775 3.046374 AGTTAACACCTATAGCCCTGGG 58.954 50.000 8.86 8.86 0.00 4.45
4841 5785 2.032965 TAGCCCTGGGTACACTCAAA 57.967 50.000 15.56 0.00 0.00 2.69
4842 5786 0.400594 AGCCCTGGGTACACTCAAAC 59.599 55.000 15.56 0.00 0.00 2.93
4843 5787 0.400594 GCCCTGGGTACACTCAAACT 59.599 55.000 15.56 0.00 0.00 2.66
4896 5840 3.446161 GCCGTATGTGCATAGGGTATCTA 59.554 47.826 23.52 0.00 45.99 1.98
5015 6533 2.607038 GGCGTTTGGTGAAGGATGTTTC 60.607 50.000 0.00 0.00 0.00 2.78
5279 6931 3.254166 GCTGAAACCACACATGATCACTT 59.746 43.478 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.125327 TCGTTGTTTCAGTCTAATTGCAAA 57.875 33.333 1.71 0.00 0.00 3.68
77 78 4.019858 TGATGTTTGTGTGGGTGAAAGAA 58.980 39.130 0.00 0.00 0.00 2.52
98 99 7.329226 AGACGCTTTCAAAAACCATTATTGATG 59.671 33.333 0.00 0.00 33.45 3.07
158 159 4.628333 ACGAACCAAATACGTTCATCGATT 59.372 37.500 0.00 0.00 39.69 3.34
172 173 2.869101 TGGATCATCCACGAACCAAA 57.131 45.000 0.66 0.00 42.67 3.28
181 182 3.134623 ACGCATTTCTAGTGGATCATCCA 59.865 43.478 0.66 0.66 45.98 3.41
202 203 6.796072 GTGAAGATATAGTGATTCGACGGTAC 59.204 42.308 0.00 0.00 0.00 3.34
203 204 6.072838 GGTGAAGATATAGTGATTCGACGGTA 60.073 42.308 0.00 0.00 0.00 4.02
204 205 5.278364 GGTGAAGATATAGTGATTCGACGGT 60.278 44.000 0.00 0.00 0.00 4.83
275 276 7.275560 AGTTTATGTTGTTGTGTCAAGCTTTTC 59.724 33.333 0.00 0.00 0.00 2.29
335 338 6.349300 GGTGCCATGAGATTAGAGAGTTTTA 58.651 40.000 0.00 0.00 0.00 1.52
392 395 2.421775 AGTGTAGTGCTCATCAGAGTCG 59.578 50.000 0.00 0.00 44.00 4.18
393 396 4.448537 AAGTGTAGTGCTCATCAGAGTC 57.551 45.455 0.00 0.00 44.00 3.36
397 400 3.366121 CGTCAAAGTGTAGTGCTCATCAG 59.634 47.826 0.00 0.00 0.00 2.90
404 407 4.992381 ATTCTTCGTCAAAGTGTAGTGC 57.008 40.909 0.00 0.00 36.31 4.40
410 413 7.484975 AGACCTCTATATTCTTCGTCAAAGTG 58.515 38.462 0.00 0.00 36.31 3.16
413 416 8.063200 TCAAGACCTCTATATTCTTCGTCAAA 57.937 34.615 0.00 0.00 0.00 2.69
455 464 1.162800 CCATCTTGGCGCTAAGAGGC 61.163 60.000 33.93 6.63 39.81 4.70
529 538 6.044046 ACCCAAACAAAAATCGGTTTTCTAC 58.956 36.000 6.89 0.00 37.32 2.59
530 539 6.223351 ACCCAAACAAAAATCGGTTTTCTA 57.777 33.333 6.89 0.00 37.32 2.10
536 547 2.292292 CTCGACCCAAACAAAAATCGGT 59.708 45.455 0.00 0.00 0.00 4.69
539 550 2.296190 AGCCTCGACCCAAACAAAAATC 59.704 45.455 0.00 0.00 0.00 2.17
546 557 1.578206 GCTCAAGCCTCGACCCAAAC 61.578 60.000 0.00 0.00 34.31 2.93
547 558 1.302511 GCTCAAGCCTCGACCCAAA 60.303 57.895 0.00 0.00 34.31 3.28
548 559 2.217038 AGCTCAAGCCTCGACCCAA 61.217 57.895 0.00 0.00 43.38 4.12
549 560 2.604686 AGCTCAAGCCTCGACCCA 60.605 61.111 0.00 0.00 43.38 4.51
550 561 2.125350 CAGCTCAAGCCTCGACCC 60.125 66.667 0.00 0.00 43.38 4.46
551 562 1.965754 ATCCAGCTCAAGCCTCGACC 61.966 60.000 0.00 0.00 43.38 4.79
552 563 0.529555 GATCCAGCTCAAGCCTCGAC 60.530 60.000 0.00 0.00 43.38 4.20
553 564 0.972471 TGATCCAGCTCAAGCCTCGA 60.972 55.000 0.00 0.00 43.38 4.04
554 565 0.530211 CTGATCCAGCTCAAGCCTCG 60.530 60.000 0.00 0.00 43.38 4.63
555 566 0.179051 CCTGATCCAGCTCAAGCCTC 60.179 60.000 0.00 0.00 43.38 4.70
556 567 1.913722 CCTGATCCAGCTCAAGCCT 59.086 57.895 0.00 0.00 43.38 4.58
557 568 1.823041 GCCTGATCCAGCTCAAGCC 60.823 63.158 0.00 0.00 43.38 4.35
558 569 0.467384 TAGCCTGATCCAGCTCAAGC 59.533 55.000 9.66 0.00 42.49 4.01
559 570 1.070445 CCTAGCCTGATCCAGCTCAAG 59.930 57.143 9.66 3.91 0.00 3.02
560 571 1.126488 CCTAGCCTGATCCAGCTCAA 58.874 55.000 9.66 0.00 0.00 3.02
561 572 0.762082 CCCTAGCCTGATCCAGCTCA 60.762 60.000 9.66 0.00 0.00 4.26
562 573 2.056985 CCCTAGCCTGATCCAGCTC 58.943 63.158 9.66 0.00 0.00 4.09
563 574 2.146061 GCCCTAGCCTGATCCAGCT 61.146 63.158 10.98 10.98 0.00 4.24
564 575 2.146061 AGCCCTAGCCTGATCCAGC 61.146 63.158 0.00 0.00 41.25 4.85
565 576 1.053264 ACAGCCCTAGCCTGATCCAG 61.053 60.000 13.59 0.00 41.25 3.86
566 577 1.003442 ACAGCCCTAGCCTGATCCA 59.997 57.895 13.59 0.00 41.25 3.41
567 578 1.449353 CACAGCCCTAGCCTGATCC 59.551 63.158 13.59 0.00 41.25 3.36
568 579 1.227793 GCACAGCCCTAGCCTGATC 60.228 63.158 13.59 0.00 41.25 2.92
569 580 2.914289 GCACAGCCCTAGCCTGAT 59.086 61.111 13.59 0.00 41.25 2.90
570 581 3.774528 CGCACAGCCCTAGCCTGA 61.775 66.667 13.59 0.00 41.25 3.86
581 592 3.426159 CCAAGTTTATACCTTGCGCACAG 60.426 47.826 11.12 11.19 38.36 3.66
582 593 2.486203 CCAAGTTTATACCTTGCGCACA 59.514 45.455 11.12 0.00 38.36 4.57
583 594 2.159435 CCCAAGTTTATACCTTGCGCAC 60.159 50.000 11.12 0.00 38.36 5.34
584 595 2.088423 CCCAAGTTTATACCTTGCGCA 58.912 47.619 5.66 5.66 38.36 6.09
585 596 1.202256 GCCCAAGTTTATACCTTGCGC 60.202 52.381 0.00 0.00 38.36 6.09
586 597 2.097466 CAGCCCAAGTTTATACCTTGCG 59.903 50.000 6.00 0.62 38.36 4.85
587 598 2.427095 CCAGCCCAAGTTTATACCTTGC 59.573 50.000 6.00 0.00 38.36 4.01
588 599 3.023832 CCCAGCCCAAGTTTATACCTTG 58.976 50.000 4.90 4.90 39.19 3.61
589 600 2.623239 GCCCAGCCCAAGTTTATACCTT 60.623 50.000 0.00 0.00 0.00 3.50
590 601 1.063942 GCCCAGCCCAAGTTTATACCT 60.064 52.381 0.00 0.00 0.00 3.08
591 602 1.399714 GCCCAGCCCAAGTTTATACC 58.600 55.000 0.00 0.00 0.00 2.73
592 603 1.399714 GGCCCAGCCCAAGTTTATAC 58.600 55.000 0.00 0.00 44.06 1.47
593 604 3.915993 GGCCCAGCCCAAGTTTATA 57.084 52.632 0.00 0.00 44.06 0.98
594 605 4.785575 GGCCCAGCCCAAGTTTAT 57.214 55.556 0.00 0.00 44.06 1.40
610 621 0.824109 TCTTATGTCGAGGCCTGTGG 59.176 55.000 12.00 0.00 0.00 4.17
611 622 1.804372 GCTCTTATGTCGAGGCCTGTG 60.804 57.143 12.00 1.50 0.00 3.66
612 623 0.461961 GCTCTTATGTCGAGGCCTGT 59.538 55.000 12.00 0.00 0.00 4.00
613 624 0.249657 GGCTCTTATGTCGAGGCCTG 60.250 60.000 12.00 2.19 45.30 4.85
614 625 2.128729 GGCTCTTATGTCGAGGCCT 58.871 57.895 3.86 3.86 45.30 5.19
615 626 4.760757 GGCTCTTATGTCGAGGCC 57.239 61.111 0.00 0.00 45.30 5.19
617 628 0.249657 GCCAGGCTCTTATGTCGAGG 60.250 60.000 3.29 0.00 0.00 4.63
618 629 0.249657 GGCCAGGCTCTTATGTCGAG 60.250 60.000 12.43 0.00 0.00 4.04
619 630 0.975556 TGGCCAGGCTCTTATGTCGA 60.976 55.000 12.43 0.00 0.00 4.20
620 631 0.531532 CTGGCCAGGCTCTTATGTCG 60.532 60.000 26.14 0.00 0.00 4.35
621 632 0.179034 CCTGGCCAGGCTCTTATGTC 60.179 60.000 38.39 0.00 42.44 3.06
622 633 1.918253 CCTGGCCAGGCTCTTATGT 59.082 57.895 38.39 0.00 42.44 2.29
623 634 4.894201 CCTGGCCAGGCTCTTATG 57.106 61.111 38.39 13.03 42.44 1.90
657 668 0.468226 TGAAAAGGACGCTGTGGTCT 59.532 50.000 0.00 0.00 37.12 3.85
718 729 0.314935 CAATAATGATGTGGCCCGGC 59.685 55.000 0.00 0.00 0.00 6.13
722 733 5.458041 AGTAATGCAATAATGATGTGGCC 57.542 39.130 0.00 0.00 0.00 5.36
733 744 4.439057 GTCTTGGGTCGAGTAATGCAATA 58.561 43.478 0.00 0.00 0.00 1.90
741 752 2.450476 GGTAAGGTCTTGGGTCGAGTA 58.550 52.381 0.00 0.00 0.00 2.59
759 770 2.353573 GTGGGTATGGTTGCGGGT 59.646 61.111 0.00 0.00 0.00 5.28
786 799 3.625897 CCAGAGGGTGCACGGTGA 61.626 66.667 13.29 0.00 0.00 4.02
821 834 1.711206 GTCAGGTTGAACTAGACCGC 58.289 55.000 0.00 0.00 40.89 5.68
822 835 1.402456 CCGTCAGGTTGAACTAGACCG 60.402 57.143 12.49 8.95 40.89 4.79
834 847 1.111116 TTGACCGTTCTCCGTCAGGT 61.111 55.000 0.00 0.00 39.05 4.00
835 848 0.388649 CTTGACCGTTCTCCGTCAGG 60.389 60.000 0.00 0.00 39.46 3.86
842 855 1.446272 CCTCGCCTTGACCGTTCTC 60.446 63.158 0.00 0.00 0.00 2.87
843 856 2.657237 CCTCGCCTTGACCGTTCT 59.343 61.111 0.00 0.00 0.00 3.01
844 857 2.434359 CCCTCGCCTTGACCGTTC 60.434 66.667 0.00 0.00 0.00 3.95
852 865 2.762043 GCTCTCTCCCCTCGCCTT 60.762 66.667 0.00 0.00 0.00 4.35
912 926 2.223340 CGGAATTGGAATGGAGCTTTCG 60.223 50.000 0.00 0.00 0.00 3.46
931 945 0.322187 AGGATTTGAAACGGGGTCGG 60.322 55.000 0.00 0.00 41.39 4.79
934 948 1.338769 CGAGAGGATTTGAAACGGGGT 60.339 52.381 0.00 0.00 0.00 4.95
1003 1024 2.263021 GGCACGCGGTAGGGTTTTT 61.263 57.895 12.47 0.00 41.93 1.94
1004 1025 2.670592 GGCACGCGGTAGGGTTTT 60.671 61.111 12.47 0.00 41.93 2.43
1494 1736 5.278858 CCAGAAAAGGTAGTACTCGAACACT 60.279 44.000 0.00 4.21 0.00 3.55
1576 1818 0.530744 TTCGAAGTGGAGGTCGATGG 59.469 55.000 0.00 0.00 45.03 3.51
1577 1819 1.993370 GTTTCGAAGTGGAGGTCGATG 59.007 52.381 0.00 0.00 45.03 3.84
1656 1898 4.908687 CGATCCGGATTGCGGCCA 62.909 66.667 20.22 0.00 0.00 5.36
1692 1934 2.260481 GCGTACAGAAGCTTCAGGTAC 58.740 52.381 31.40 31.40 37.11 3.34
1942 2184 2.094182 TCTCGGACAGTGTAGGATTTGC 60.094 50.000 0.00 0.00 0.00 3.68
2041 2283 1.624336 AACACATTGCCTGCATCAGT 58.376 45.000 0.00 0.00 0.00 3.41
2115 2357 2.359981 ATGGTCTCTGCATCAATGGG 57.640 50.000 0.00 0.00 0.00 4.00
2317 2559 4.487948 CCTACATCACACCTTTGCATTTG 58.512 43.478 0.00 0.00 0.00 2.32
2319 2561 3.091545 CCCTACATCACACCTTTGCATT 58.908 45.455 0.00 0.00 0.00 3.56
2479 2721 6.321181 TGGAAAATATGACCCAATAAGTCTGC 59.679 38.462 0.00 0.00 35.21 4.26
2553 2795 7.874016 CCGGGTAATAGTAACATGCATTAAGTA 59.126 37.037 0.00 0.00 0.00 2.24
2556 2798 6.707161 GTCCGGGTAATAGTAACATGCATTAA 59.293 38.462 0.00 0.00 0.00 1.40
2558 2800 5.061179 GTCCGGGTAATAGTAACATGCATT 58.939 41.667 0.00 0.00 0.00 3.56
2706 2954 5.982890 AACTTCCAATACCTGAACAATGG 57.017 39.130 0.00 0.00 0.00 3.16
2707 2955 6.646240 CCAAAACTTCCAATACCTGAACAATG 59.354 38.462 0.00 0.00 0.00 2.82
2751 2999 5.065731 GCAGCATCAACTTTGTAGATAAGCT 59.934 40.000 0.00 0.00 0.00 3.74
2933 3181 2.597578 TCCAGTACCAGAGTGCACTA 57.402 50.000 21.73 0.00 0.00 2.74
3027 3391 2.571653 TCCCAGTCCTGAAACCATACAG 59.428 50.000 0.00 0.00 0.00 2.74
3133 3497 1.740296 CAAGTTGTAGGCCCCGTCG 60.740 63.158 0.00 0.00 0.00 5.12
3226 3590 9.686683 AAACTGCTTATGGTTATAGAAACAGAT 57.313 29.630 0.00 0.00 35.16 2.90
3254 3618 8.282592 TCAACATGTAGAGATTTTTCAACTTCG 58.717 33.333 0.00 0.00 0.00 3.79
3266 3630 9.071276 ACAATCTTTTGTTCAACATGTAGAGAT 57.929 29.630 0.00 0.00 43.57 2.75
3385 3749 3.378427 GGGAAATGTGTAATGACAGGAGC 59.622 47.826 0.00 0.00 35.82 4.70
3426 3790 9.965824 AACAGTAACTAGACAAAATGGAAAATG 57.034 29.630 0.00 0.00 0.00 2.32
3429 3793 7.284489 AGCAACAGTAACTAGACAAAATGGAAA 59.716 33.333 0.00 0.00 0.00 3.13
3466 3830 3.125316 CCTGGTAAACGTTGAATCTCAGC 59.875 47.826 0.00 0.00 0.00 4.26
3540 3904 5.428253 TCCACATGCTTGTAGAATACCTTC 58.572 41.667 4.73 0.00 42.12 3.46
3639 4003 0.486879 TTTTCCCTGGGCTTGGATGT 59.513 50.000 8.22 0.00 0.00 3.06
3648 4012 1.202639 GCCAGTTTGTTTTTCCCTGGG 60.203 52.381 6.33 6.33 42.37 4.45
3765 4129 4.513692 TGTACAAGTCGAAGGGTTTCATTG 59.486 41.667 0.00 0.00 32.67 2.82
3912 4276 1.673993 CCATTGCGCCACCACAGTA 60.674 57.895 4.18 0.00 0.00 2.74
3920 4284 2.829914 GCAGGATCCATTGCGCCA 60.830 61.111 15.82 0.00 0.00 5.69
4106 4470 4.766891 CCTCTACTCAAGGCAAATTTGGAA 59.233 41.667 19.47 0.00 0.00 3.53
4225 4589 2.567169 CACACCTTCCAGTAGGACATCA 59.433 50.000 0.00 0.00 45.73 3.07
4228 4592 0.685097 GCACACCTTCCAGTAGGACA 59.315 55.000 0.00 0.00 45.73 4.02
4267 4631 5.012664 TGGCAGAAATTTGTACTACAGGAGA 59.987 40.000 0.00 0.00 0.00 3.71
4293 4657 8.642908 AAACTTTTCTTACACCAAAGTTATGC 57.357 30.769 9.12 0.00 45.64 3.14
4330 4694 9.178758 GATTCCAGGAAAGTTATGTTCAGTTAT 57.821 33.333 5.81 0.00 0.00 1.89
4341 4706 7.127186 TGTGATATCCAGATTCCAGGAAAGTTA 59.873 37.037 5.81 0.00 37.48 2.24
4342 4707 6.069440 TGTGATATCCAGATTCCAGGAAAGTT 60.069 38.462 5.81 0.00 37.48 2.66
4343 4708 5.429762 TGTGATATCCAGATTCCAGGAAAGT 59.570 40.000 5.81 0.00 37.48 2.66
4344 4709 5.933617 TGTGATATCCAGATTCCAGGAAAG 58.066 41.667 5.81 0.00 37.48 2.62
4345 4710 5.974156 TGTGATATCCAGATTCCAGGAAA 57.026 39.130 5.81 0.00 37.48 3.13
4380 4777 2.763448 ACATCAACCTCTCTGCTAGGAC 59.237 50.000 0.00 0.00 37.57 3.85
4382 4779 3.701542 TGTACATCAACCTCTCTGCTAGG 59.298 47.826 0.00 0.00 40.20 3.02
4449 4853 5.545588 GCACAGAGCATCCTTATATCAGAA 58.454 41.667 0.00 0.00 44.79 3.02
4450 4854 5.144692 GCACAGAGCATCCTTATATCAGA 57.855 43.478 0.00 0.00 44.79 3.27
4484 4888 2.348998 CACAGAGCACCCTCACCC 59.651 66.667 0.00 0.00 40.68 4.61
4503 4907 1.377994 CCTTCTCCAGCCTGCAACT 59.622 57.895 0.00 0.00 0.00 3.16
4520 4924 1.388547 TCACCAGCAAGTGTGAAACC 58.611 50.000 6.09 0.00 38.48 3.27
4528 4932 3.281727 TTCAGTCTTTCACCAGCAAGT 57.718 42.857 0.00 0.00 0.00 3.16
4548 4952 6.841755 GCATATATGGAACTCTCCTAGGGTAT 59.158 42.308 14.51 0.00 42.94 2.73
4679 5543 7.095695 CCTTGAGGTTCAAACTTTTAAGTGA 57.904 36.000 0.00 0.00 39.66 3.41
4728 5671 9.113838 AGCAAATTAACTACTCGAATCATTCAT 57.886 29.630 0.00 0.00 0.00 2.57
4782 5725 4.380550 GCAGTAAGTAAAACAATCCCCTGC 60.381 45.833 0.00 0.00 35.40 4.85
4821 5765 2.238898 GTTTGAGTGTACCCAGGGCTAT 59.761 50.000 4.91 0.00 0.00 2.97
4831 5775 8.662141 TGAGTGTTCTTTTAAGTTTGAGTGTAC 58.338 33.333 0.00 0.00 0.00 2.90
4841 5785 5.239525 GTGCAGGATGAGTGTTCTTTTAAGT 59.760 40.000 0.00 0.00 39.69 2.24
4842 5786 5.239306 TGTGCAGGATGAGTGTTCTTTTAAG 59.761 40.000 0.00 0.00 39.69 1.85
4843 5787 5.129634 TGTGCAGGATGAGTGTTCTTTTAA 58.870 37.500 0.00 0.00 39.69 1.52
4896 5840 1.578215 AATGCAGGCCCAGATGGAGT 61.578 55.000 0.00 0.00 37.39 3.85
5015 6533 8.644619 CAAAATGAATATTCTGTTGCAACTGAG 58.355 33.333 30.02 20.88 37.99 3.35
5279 6931 0.249868 CGTTTGTGTGGCTCTGAGGA 60.250 55.000 6.83 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.