Multiple sequence alignment - TraesCS1B01G233200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G233200 chr1B 100.000 5288 0 0 1 5288 418809390 418814677 0.000000e+00 9766.0
1 TraesCS1B01G233200 chr1B 96.226 106 4 0 1 106 130833798 130833903 1.960000e-39 174.0
2 TraesCS1B01G233200 chr1A 95.077 5099 192 21 101 5186 388837940 388842992 0.000000e+00 7971.0
3 TraesCS1B01G233200 chr1A 90.385 104 8 1 5187 5288 388843024 388843127 9.240000e-28 135.0
4 TraesCS1B01G233200 chr1D 95.794 4636 145 22 101 4706 309077666 309082281 0.000000e+00 7435.0
5 TraesCS1B01G233200 chr1D 97.358 265 5 1 4922 5186 309082276 309082538 2.900000e-122 449.0
6 TraesCS1B01G233200 chr1D 91.429 105 7 1 5186 5288 309082569 309082673 5.520000e-30 143.0
7 TraesCS1B01G233200 chr1D 97.826 46 1 0 578 623 354518961 354518916 4.390000e-11 80.5
8 TraesCS1B01G233200 chr2A 87.107 3374 425 9 924 4292 95991734 95995102 0.000000e+00 3812.0
9 TraesCS1B01G233200 chr2A 95.833 48 1 1 580 627 605207566 605207612 5.680000e-10 76.8
10 TraesCS1B01G233200 chr2B 87.022 3375 427 9 925 4292 148237446 148240816 0.000000e+00 3795.0
11 TraesCS1B01G233200 chr2D 87.006 3317 425 5 978 4292 97220116 97223428 0.000000e+00 3733.0
12 TraesCS1B01G233200 chr3D 86.629 3373 434 15 924 4290 147817798 147821159 0.000000e+00 3714.0
13 TraesCS1B01G233200 chr3A 86.574 3374 435 16 924 4290 165420163 165416801 0.000000e+00 3705.0
14 TraesCS1B01G233200 chr3A 94.000 50 3 0 578 627 481889768 481889719 5.680000e-10 76.8
15 TraesCS1B01G233200 chr3B 86.507 3372 439 14 924 4290 214563690 214560330 0.000000e+00 3692.0
16 TraesCS1B01G233200 chr5D 80.876 3310 586 31 993 4280 46319055 46322339 0.000000e+00 2562.0
17 TraesCS1B01G233200 chrUn 99.065 107 1 0 1 107 390605564 390605458 5.400000e-45 193.0
18 TraesCS1B01G233200 chrUn 92.308 52 2 2 579 630 83375478 83375429 7.350000e-09 73.1
19 TraesCS1B01G233200 chr7B 98.131 107 2 0 1 107 613188968 613188862 2.510000e-43 187.0
20 TraesCS1B01G233200 chr6B 98.148 108 1 1 1 107 22459428 22459535 2.510000e-43 187.0
21 TraesCS1B01G233200 chr6B 95.413 109 4 1 1 109 22587798 22587691 7.040000e-39 172.0
22 TraesCS1B01G233200 chr6B 83.784 74 8 4 578 650 517836014 517835944 3.420000e-07 67.6
23 TraesCS1B01G233200 chr6B 83.784 74 4 8 578 650 452186040 452185974 4.420000e-06 63.9
24 TraesCS1B01G233200 chr4B 97.297 111 2 1 1 110 95444677 95444567 2.510000e-43 187.0
25 TraesCS1B01G233200 chr7D 96.364 110 2 2 1 108 608479174 608479283 4.210000e-41 180.0
26 TraesCS1B01G233200 chr5B 97.143 105 3 0 1 105 387369273 387369377 1.510000e-40 178.0
27 TraesCS1B01G233200 chr6A 95.370 108 4 1 1 107 616797316 616797423 2.530000e-38 171.0
28 TraesCS1B01G233200 chr4D 92.308 52 3 1 578 629 15316084 15316134 7.350000e-09 73.1
29 TraesCS1B01G233200 chr6D 95.455 44 2 0 578 621 34019180 34019223 2.640000e-08 71.3
30 TraesCS1B01G233200 chr4A 87.302 63 5 3 578 639 133061433 133061373 9.500000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G233200 chr1B 418809390 418814677 5287 False 9766.000000 9766 100.000000 1 5288 1 chr1B.!!$F2 5287
1 TraesCS1B01G233200 chr1A 388837940 388843127 5187 False 4053.000000 7971 92.731000 101 5288 2 chr1A.!!$F1 5187
2 TraesCS1B01G233200 chr1D 309077666 309082673 5007 False 2675.666667 7435 94.860333 101 5288 3 chr1D.!!$F1 5187
3 TraesCS1B01G233200 chr2A 95991734 95995102 3368 False 3812.000000 3812 87.107000 924 4292 1 chr2A.!!$F1 3368
4 TraesCS1B01G233200 chr2B 148237446 148240816 3370 False 3795.000000 3795 87.022000 925 4292 1 chr2B.!!$F1 3367
5 TraesCS1B01G233200 chr2D 97220116 97223428 3312 False 3733.000000 3733 87.006000 978 4292 1 chr2D.!!$F1 3314
6 TraesCS1B01G233200 chr3D 147817798 147821159 3361 False 3714.000000 3714 86.629000 924 4290 1 chr3D.!!$F1 3366
7 TraesCS1B01G233200 chr3A 165416801 165420163 3362 True 3705.000000 3705 86.574000 924 4290 1 chr3A.!!$R1 3366
8 TraesCS1B01G233200 chr3B 214560330 214563690 3360 True 3692.000000 3692 86.507000 924 4290 1 chr3B.!!$R1 3366
9 TraesCS1B01G233200 chr5D 46319055 46322339 3284 False 2562.000000 2562 80.876000 993 4280 1 chr5D.!!$F1 3287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.109919 GGATTGTGACGGTTTTCGCC 60.110 55.000 0.00 0.0 43.89 5.54 F
22 23 0.109919 GATTGTGACGGTTTTCGCCC 60.110 55.000 0.00 0.0 43.89 6.13 F
30 31 1.007038 GGTTTTCGCCCGGTTTTCC 60.007 57.895 0.00 0.0 0.00 3.13 F
1802 1832 1.069049 GGCAACAGGTGAAAATGCACT 59.931 47.619 0.00 0.0 38.73 4.40 F
2358 2388 3.501349 AGACAAGTCAGCTGAGAAGGTA 58.499 45.455 18.89 0.0 0.00 3.08 F
3840 3876 0.814457 AGCTCACTGTCGGTCTCATC 59.186 55.000 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1046 1.226101 CGTGCATAACGCTTGCCTG 60.226 57.895 0.0 0.0 46.99 4.85 R
1802 1832 3.070476 TCAGCACATATTCTTGTGGCA 57.930 42.857 6.7 0.0 45.69 4.92 R
1950 1980 3.885724 AAAGCCCCGTAATTTCCATTG 57.114 42.857 0.0 0.0 0.00 2.82 R
3559 3589 2.301583 TCGTCTGAACATCCATGAACCA 59.698 45.455 0.0 0.0 0.00 3.67 R
4073 4112 0.527565 CATTTCACCAAAGGGGAGCG 59.472 55.000 0.0 0.0 36.04 5.03 R
4719 4764 0.036164 TAAGGCTGACAACGGTGCAT 59.964 50.000 0.0 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.378013 GCGGATTGTGACGGTTTTC 57.622 52.632 0.00 0.00 0.00 2.29
19 20 0.452122 GCGGATTGTGACGGTTTTCG 60.452 55.000 0.00 0.00 45.88 3.46
20 21 0.452122 CGGATTGTGACGGTTTTCGC 60.452 55.000 0.00 0.00 43.89 4.70
21 22 0.109919 GGATTGTGACGGTTTTCGCC 60.110 55.000 0.00 0.00 43.89 5.54
22 23 0.109919 GATTGTGACGGTTTTCGCCC 60.110 55.000 0.00 0.00 43.89 6.13
28 29 2.723116 CGGTTTTCGCCCGGTTTT 59.277 55.556 0.00 0.00 41.78 2.43
29 30 1.370778 CGGTTTTCGCCCGGTTTTC 60.371 57.895 0.00 0.00 41.78 2.29
30 31 1.007038 GGTTTTCGCCCGGTTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
45 46 4.487948 GGTTTTCCGTTAATTAACTGGGC 58.512 43.478 25.42 17.56 33.65 5.36
46 47 4.022155 GGTTTTCCGTTAATTAACTGGGCA 60.022 41.667 25.42 16.39 33.65 5.36
47 48 5.509332 GGTTTTCCGTTAATTAACTGGGCAA 60.509 40.000 25.42 19.34 33.65 4.52
48 49 5.986501 TTTCCGTTAATTAACTGGGCAAT 57.013 34.783 25.42 0.00 33.65 3.56
49 50 5.986501 TTCCGTTAATTAACTGGGCAATT 57.013 34.783 25.42 0.00 33.65 2.32
50 51 5.570234 TCCGTTAATTAACTGGGCAATTC 57.430 39.130 25.42 3.42 33.65 2.17
51 52 5.258051 TCCGTTAATTAACTGGGCAATTCT 58.742 37.500 25.42 0.00 33.65 2.40
52 53 5.355910 TCCGTTAATTAACTGGGCAATTCTC 59.644 40.000 25.42 2.87 33.65 2.87
53 54 5.357032 CCGTTAATTAACTGGGCAATTCTCT 59.643 40.000 22.57 0.00 34.12 3.10
54 55 6.127730 CCGTTAATTAACTGGGCAATTCTCTT 60.128 38.462 22.57 0.00 34.12 2.85
55 56 6.967199 CGTTAATTAACTGGGCAATTCTCTTC 59.033 38.462 22.57 0.00 34.12 2.87
56 57 7.148239 CGTTAATTAACTGGGCAATTCTCTTCT 60.148 37.037 22.57 0.00 34.12 2.85
57 58 6.521151 AATTAACTGGGCAATTCTCTTCTG 57.479 37.500 0.00 0.00 0.00 3.02
58 59 1.831580 ACTGGGCAATTCTCTTCTGC 58.168 50.000 0.00 0.00 35.28 4.26
59 60 1.353694 ACTGGGCAATTCTCTTCTGCT 59.646 47.619 0.00 0.00 36.32 4.24
60 61 2.224967 ACTGGGCAATTCTCTTCTGCTT 60.225 45.455 0.00 0.00 36.32 3.91
61 62 2.824341 CTGGGCAATTCTCTTCTGCTTT 59.176 45.455 0.00 0.00 36.32 3.51
62 63 4.012374 CTGGGCAATTCTCTTCTGCTTTA 58.988 43.478 0.00 0.00 36.32 1.85
63 64 4.603131 TGGGCAATTCTCTTCTGCTTTAT 58.397 39.130 0.00 0.00 36.32 1.40
64 65 5.018809 TGGGCAATTCTCTTCTGCTTTATT 58.981 37.500 0.00 0.00 36.32 1.40
65 66 6.186957 TGGGCAATTCTCTTCTGCTTTATTA 58.813 36.000 0.00 0.00 36.32 0.98
66 67 6.663093 TGGGCAATTCTCTTCTGCTTTATTAA 59.337 34.615 0.00 0.00 36.32 1.40
67 68 7.342799 TGGGCAATTCTCTTCTGCTTTATTAAT 59.657 33.333 0.00 0.00 36.32 1.40
68 69 7.650903 GGGCAATTCTCTTCTGCTTTATTAATG 59.349 37.037 0.00 0.00 36.32 1.90
69 70 7.650903 GGCAATTCTCTTCTGCTTTATTAATGG 59.349 37.037 0.00 0.00 36.32 3.16
70 71 8.408601 GCAATTCTCTTCTGCTTTATTAATGGA 58.591 33.333 0.00 0.00 33.20 3.41
73 74 9.857656 ATTCTCTTCTGCTTTATTAATGGATGA 57.142 29.630 0.00 0.00 0.00 2.92
74 75 8.899427 TCTCTTCTGCTTTATTAATGGATGAG 57.101 34.615 0.00 0.00 0.00 2.90
75 76 7.935755 TCTCTTCTGCTTTATTAATGGATGAGG 59.064 37.037 0.00 0.00 0.00 3.86
76 77 6.488006 TCTTCTGCTTTATTAATGGATGAGGC 59.512 38.462 0.00 0.00 0.00 4.70
77 78 5.693961 TCTGCTTTATTAATGGATGAGGCA 58.306 37.500 0.00 0.00 0.00 4.75
78 79 6.128486 TCTGCTTTATTAATGGATGAGGCAA 58.872 36.000 0.00 0.00 0.00 4.52
79 80 6.606796 TCTGCTTTATTAATGGATGAGGCAAA 59.393 34.615 0.00 0.00 0.00 3.68
80 81 7.288389 TCTGCTTTATTAATGGATGAGGCAAAT 59.712 33.333 0.00 0.00 0.00 2.32
81 82 7.436118 TGCTTTATTAATGGATGAGGCAAATC 58.564 34.615 0.00 0.00 0.00 2.17
82 83 7.288389 TGCTTTATTAATGGATGAGGCAAATCT 59.712 33.333 0.00 0.00 0.00 2.40
83 84 8.146412 GCTTTATTAATGGATGAGGCAAATCTT 58.854 33.333 0.00 0.00 0.00 2.40
86 87 9.820725 TTATTAATGGATGAGGCAAATCTTTTG 57.179 29.630 0.00 0.00 0.00 2.44
87 88 3.598019 TGGATGAGGCAAATCTTTTGC 57.402 42.857 14.88 14.88 44.22 3.68
94 95 2.438868 GCAAATCTTTTGCCTCCGTT 57.561 45.000 12.74 0.00 39.38 4.44
95 96 2.754472 GCAAATCTTTTGCCTCCGTTT 58.246 42.857 12.74 0.00 39.38 3.60
96 97 2.731451 GCAAATCTTTTGCCTCCGTTTC 59.269 45.455 12.74 0.00 39.38 2.78
97 98 3.798548 GCAAATCTTTTGCCTCCGTTTCA 60.799 43.478 12.74 0.00 39.38 2.69
98 99 4.367450 CAAATCTTTTGCCTCCGTTTCAA 58.633 39.130 0.00 0.00 0.00 2.69
99 100 4.664150 AATCTTTTGCCTCCGTTTCAAA 57.336 36.364 0.00 0.00 0.00 2.69
100 101 4.664150 ATCTTTTGCCTCCGTTTCAAAA 57.336 36.364 0.00 0.00 37.36 2.44
101 102 4.457834 TCTTTTGCCTCCGTTTCAAAAA 57.542 36.364 0.00 0.00 38.65 1.94
223 224 8.370266 AGTTTGTCACTGGGTATGTAGTAATA 57.630 34.615 0.00 0.00 32.83 0.98
233 234 8.326765 TGGGTATGTAGTAATATGTCTTTGGT 57.673 34.615 0.00 0.00 0.00 3.67
254 255 8.453238 TTGGTTTATCTACTTGTTGTTGCTTA 57.547 30.769 0.00 0.00 0.00 3.09
271 272 5.694231 TGCTTACGTAGTTCAGAACTGTA 57.306 39.130 23.92 15.67 37.78 2.74
326 327 3.433306 TGGACAGGGAAATTCGAACAT 57.567 42.857 0.00 0.00 0.00 2.71
349 352 9.699410 ACATCATATTTCATAAAGGTTGAAGGA 57.301 29.630 0.00 0.00 34.76 3.36
352 355 8.632679 TCATATTTCATAAAGGTTGAAGGATGC 58.367 33.333 0.00 0.00 34.76 3.91
365 368 4.584874 TGAAGGATGCGGAACTTATGAAA 58.415 39.130 0.00 0.00 0.00 2.69
394 397 3.352554 TTACGAGTTTGCACGTGACTA 57.647 42.857 22.23 4.83 41.62 2.59
486 499 4.385199 CCCACCAATATAAGAGCTGGTTCA 60.385 45.833 0.00 0.00 40.23 3.18
487 500 5.380043 CCACCAATATAAGAGCTGGTTCAT 58.620 41.667 0.00 0.00 40.23 2.57
515 528 8.165397 AGAAAATGATGTTTGGGGATTTTTCAT 58.835 29.630 0.00 0.00 35.40 2.57
570 584 8.365399 TGCTCCAGTTATTATTATTCTTGTCG 57.635 34.615 0.00 0.00 0.00 4.35
583 605 3.994204 TCTTGTCGTGTTGCTGTACTA 57.006 42.857 0.00 0.00 0.00 1.82
584 606 3.897325 TCTTGTCGTGTTGCTGTACTAG 58.103 45.455 0.00 0.00 0.00 2.57
585 607 3.566742 TCTTGTCGTGTTGCTGTACTAGA 59.433 43.478 0.00 0.00 0.00 2.43
586 608 3.554259 TGTCGTGTTGCTGTACTAGAG 57.446 47.619 0.00 0.00 0.00 2.43
587 609 2.882761 TGTCGTGTTGCTGTACTAGAGT 59.117 45.455 0.00 0.00 0.00 3.24
588 610 3.317149 TGTCGTGTTGCTGTACTAGAGTT 59.683 43.478 0.00 0.00 0.00 3.01
590 612 5.008911 TGTCGTGTTGCTGTACTAGAGTTAA 59.991 40.000 0.00 0.00 0.00 2.01
591 613 5.568296 GTCGTGTTGCTGTACTAGAGTTAAG 59.432 44.000 0.00 0.00 0.00 1.85
592 614 5.471116 TCGTGTTGCTGTACTAGAGTTAAGA 59.529 40.000 0.00 0.00 0.00 2.10
593 615 5.568296 CGTGTTGCTGTACTAGAGTTAAGAC 59.432 44.000 0.00 0.00 0.00 3.01
594 616 6.444633 GTGTTGCTGTACTAGAGTTAAGACA 58.555 40.000 0.00 0.00 0.00 3.41
595 617 6.362820 GTGTTGCTGTACTAGAGTTAAGACAC 59.637 42.308 0.00 0.61 0.00 3.67
596 618 6.264744 TGTTGCTGTACTAGAGTTAAGACACT 59.735 38.462 0.00 0.00 0.00 3.55
598 620 7.991084 TGCTGTACTAGAGTTAAGACACTTA 57.009 36.000 0.00 0.00 0.00 2.24
600 622 9.021807 TGCTGTACTAGAGTTAAGACACTTATT 57.978 33.333 0.00 0.00 0.00 1.40
601 623 9.857957 GCTGTACTAGAGTTAAGACACTTATTT 57.142 33.333 0.00 0.00 0.00 1.40
606 628 8.877195 ACTAGAGTTAAGACACTTATTTTGGGA 58.123 33.333 0.00 0.00 0.00 4.37
607 629 7.981102 AGAGTTAAGACACTTATTTTGGGAC 57.019 36.000 0.00 0.00 0.00 4.46
608 630 6.649557 AGAGTTAAGACACTTATTTTGGGACG 59.350 38.462 0.00 0.00 0.00 4.79
609 631 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
610 632 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
611 633 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
612 634 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
613 635 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
614 636 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
615 637 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
640 662 9.680315 AGTACTTATATAGAGTCATGAAAACGC 57.320 33.333 0.00 0.00 0.00 4.84
644 666 8.803201 TTATATAGAGTCATGAAAACGCTGAG 57.197 34.615 0.00 0.00 0.00 3.35
692 714 5.310451 TGCTCGTAATTTTGGGACTTTAGT 58.690 37.500 0.00 0.00 0.00 2.24
696 718 7.908601 GCTCGTAATTTTGGGACTTTAGTTATG 59.091 37.037 0.00 0.00 0.00 1.90
698 720 8.723311 TCGTAATTTTGGGACTTTAGTTATGTG 58.277 33.333 0.00 0.00 0.00 3.21
720 742 1.200948 GCAAGTTTTAGCCAGCAGAGG 59.799 52.381 0.00 0.00 0.00 3.69
723 745 3.229697 AGTTTTAGCCAGCAGAGGTTT 57.770 42.857 0.00 0.00 0.00 3.27
739 761 8.864087 AGCAGAGGTTTTCTCAATTTTAGATTT 58.136 29.630 0.00 0.00 44.81 2.17
785 807 1.850345 TCCCCTGTTGGTGAGTTTTCT 59.150 47.619 0.00 0.00 0.00 2.52
795 817 5.055265 TGGTGAGTTTTCTTATGGTTCCA 57.945 39.130 0.00 0.00 0.00 3.53
892 914 6.070116 TGAGAAATTCAAAGCAGATTGCACG 61.070 40.000 3.67 0.00 38.27 5.34
938 960 8.620416 TGAAGATGTACAATTTATTCCGGAATG 58.380 33.333 34.93 23.55 32.50 2.67
947 969 9.567776 ACAATTTATTCCGGAATGATGTACATA 57.432 29.630 34.93 13.84 38.38 2.29
1019 1046 5.809051 GGAAAATGTCATCAAATCCTGAAGC 59.191 40.000 0.00 0.00 37.67 3.86
1287 1314 2.352715 GCCATTTGCTTTCCACTGTACC 60.353 50.000 0.00 0.00 36.87 3.34
1533 1563 3.127721 GCTTTGGCCTGTTAGATGAAGAC 59.872 47.826 3.32 0.00 0.00 3.01
1695 1725 3.673902 TGTTCGATGGCAGATGAGAAAA 58.326 40.909 0.00 0.00 0.00 2.29
1802 1832 1.069049 GGCAACAGGTGAAAATGCACT 59.931 47.619 0.00 0.00 38.73 4.40
1932 1962 4.141620 CCAGAGACTATGTATGGCCAAACT 60.142 45.833 10.96 0.00 0.00 2.66
2334 2364 6.837312 ACCAATAATCGACATTCCTGGATTA 58.163 36.000 0.00 0.00 36.24 1.75
2358 2388 3.501349 AGACAAGTCAGCTGAGAAGGTA 58.499 45.455 18.89 0.00 0.00 3.08
2382 2412 9.517609 GTATGTGTTGATCTTAAGATTACGAGT 57.482 33.333 18.88 11.39 34.37 4.18
2592 2622 4.040829 TCAAGATCTGGTGATGAGTGTGTT 59.959 41.667 0.00 0.00 32.19 3.32
3559 3589 5.450412 GGCATGAATCGTGATTTATTGGTGT 60.450 40.000 6.65 0.00 0.00 4.16
3710 3740 6.349777 CCCGATCCTACTCTTAGAATAGCAAG 60.350 46.154 0.00 0.00 0.00 4.01
3840 3876 0.814457 AGCTCACTGTCGGTCTCATC 59.186 55.000 0.00 0.00 0.00 2.92
3899 3935 2.094854 GCTTGAGGGTGCTTCAATCAAG 60.095 50.000 8.50 8.50 46.12 3.02
3930 3966 2.621371 AAGCACGTTTGTTTGCCCCG 62.621 55.000 0.00 0.00 39.75 5.73
3933 3969 1.529713 ACGTTTGTTTGCCCCGGAT 60.530 52.632 0.73 0.00 0.00 4.18
3939 3975 1.227383 GTTTGCCCCGGATGAGGAT 59.773 57.895 0.73 0.00 0.00 3.24
3951 3987 3.428180 CGGATGAGGATATTAGTGAGGCG 60.428 52.174 0.00 0.00 0.00 5.52
4050 4089 4.268359 AGAAAGATGAAGCAAGGACCATC 58.732 43.478 0.00 0.00 36.56 3.51
4073 4112 1.701704 CCGCAGGCTTTGAATTTGAC 58.298 50.000 0.00 0.00 46.14 3.18
4080 4119 1.402852 GCTTTGAATTTGACGCTCCCC 60.403 52.381 0.00 0.00 0.00 4.81
4226 4265 2.051345 GCTGAACAACAACCCGCG 60.051 61.111 0.00 0.00 0.00 6.46
4227 4266 2.051345 CTGAACAACAACCCGCGC 60.051 61.111 0.00 0.00 0.00 6.86
4292 4331 1.128692 CGAAGCCCAAAACTAAGCTCG 59.871 52.381 0.00 0.00 33.56 5.03
4348 4387 1.735198 CATGTTTGCAGCTTGGCCG 60.735 57.895 0.00 0.00 0.00 6.13
4477 4516 5.831702 AGGCTCAATTTGCTTCTAGATTG 57.168 39.130 0.00 0.00 0.00 2.67
4487 4526 9.846248 AATTTGCTTCTAGATTGATGTGTTTAC 57.154 29.630 0.00 0.00 0.00 2.01
4569 4614 8.519799 AAACCAAGTTCTAGAATGTTCAGAAA 57.480 30.769 8.75 0.00 31.29 2.52
4637 4682 5.804639 TGTATGTGATATGTATGGGGCTTC 58.195 41.667 0.00 0.00 0.00 3.86
4691 4736 7.986085 ATGTAGCTTGGGAAATCATGTATAC 57.014 36.000 0.00 0.00 0.00 1.47
4700 4745 8.224389 TGGGAAATCATGTATACAAATGAGTG 57.776 34.615 10.14 2.57 36.31 3.51
4701 4746 8.052141 TGGGAAATCATGTATACAAATGAGTGA 58.948 33.333 10.14 8.28 36.31 3.41
4702 4747 9.071276 GGGAAATCATGTATACAAATGAGTGAT 57.929 33.333 10.14 10.24 36.31 3.06
4706 4751 8.893219 ATCATGTATACAAATGAGTGATTCGT 57.107 30.769 10.14 0.00 36.31 3.85
4707 4752 8.130307 TCATGTATACAAATGAGTGATTCGTG 57.870 34.615 10.14 0.00 0.00 4.35
4708 4753 7.763985 TCATGTATACAAATGAGTGATTCGTGT 59.236 33.333 10.14 0.00 0.00 4.49
4709 4754 7.520119 TGTATACAAATGAGTGATTCGTGTC 57.480 36.000 2.20 0.00 0.00 3.67
4710 4755 7.320399 TGTATACAAATGAGTGATTCGTGTCT 58.680 34.615 2.20 0.00 0.00 3.41
4711 4756 8.463607 TGTATACAAATGAGTGATTCGTGTCTA 58.536 33.333 2.20 0.00 0.00 2.59
4712 4757 7.993821 ATACAAATGAGTGATTCGTGTCTAG 57.006 36.000 0.00 0.00 0.00 2.43
4713 4758 6.025749 ACAAATGAGTGATTCGTGTCTAGA 57.974 37.500 0.00 0.00 0.00 2.43
4714 4759 6.455647 ACAAATGAGTGATTCGTGTCTAGAA 58.544 36.000 0.00 0.00 0.00 2.10
4715 4760 7.099764 ACAAATGAGTGATTCGTGTCTAGAAT 58.900 34.615 0.00 0.00 40.63 2.40
4722 4767 5.820926 GATTCGTGTCTAGAATCTCATGC 57.179 43.478 10.60 0.00 46.22 4.06
4723 4768 4.718940 TTCGTGTCTAGAATCTCATGCA 57.281 40.909 0.00 0.00 0.00 3.96
4724 4769 4.033990 TCGTGTCTAGAATCTCATGCAC 57.966 45.455 0.00 0.00 0.00 4.57
4725 4770 3.119291 CGTGTCTAGAATCTCATGCACC 58.881 50.000 0.00 0.00 0.00 5.01
4726 4771 3.119291 GTGTCTAGAATCTCATGCACCG 58.881 50.000 0.00 0.00 0.00 4.94
4727 4772 2.760650 TGTCTAGAATCTCATGCACCGT 59.239 45.455 0.00 0.00 0.00 4.83
4728 4773 3.195610 TGTCTAGAATCTCATGCACCGTT 59.804 43.478 0.00 0.00 0.00 4.44
4729 4774 3.553511 GTCTAGAATCTCATGCACCGTTG 59.446 47.826 0.00 0.00 0.00 4.10
4730 4775 2.479566 AGAATCTCATGCACCGTTGT 57.520 45.000 0.00 0.00 0.00 3.32
4731 4776 2.350522 AGAATCTCATGCACCGTTGTC 58.649 47.619 0.00 0.00 0.00 3.18
4732 4777 2.076100 GAATCTCATGCACCGTTGTCA 58.924 47.619 0.00 0.00 0.00 3.58
4733 4778 1.730501 ATCTCATGCACCGTTGTCAG 58.269 50.000 0.00 0.00 0.00 3.51
4734 4779 0.950555 TCTCATGCACCGTTGTCAGC 60.951 55.000 0.00 0.00 0.00 4.26
4735 4780 1.915614 CTCATGCACCGTTGTCAGCC 61.916 60.000 0.00 0.00 0.00 4.85
4736 4781 1.968017 CATGCACCGTTGTCAGCCT 60.968 57.895 0.00 0.00 0.00 4.58
4737 4782 1.228245 ATGCACCGTTGTCAGCCTT 60.228 52.632 0.00 0.00 0.00 4.35
4738 4783 0.036164 ATGCACCGTTGTCAGCCTTA 59.964 50.000 0.00 0.00 0.00 2.69
4739 4784 0.036164 TGCACCGTTGTCAGCCTTAT 59.964 50.000 0.00 0.00 0.00 1.73
4740 4785 1.165270 GCACCGTTGTCAGCCTTATT 58.835 50.000 0.00 0.00 0.00 1.40
4741 4786 2.289756 TGCACCGTTGTCAGCCTTATTA 60.290 45.455 0.00 0.00 0.00 0.98
4742 4787 2.745281 GCACCGTTGTCAGCCTTATTAA 59.255 45.455 0.00 0.00 0.00 1.40
4743 4788 3.189702 GCACCGTTGTCAGCCTTATTAAA 59.810 43.478 0.00 0.00 0.00 1.52
4744 4789 4.671766 GCACCGTTGTCAGCCTTATTAAAG 60.672 45.833 0.00 0.00 0.00 1.85
4745 4790 4.693566 CACCGTTGTCAGCCTTATTAAAGA 59.306 41.667 0.00 0.00 34.37 2.52
4746 4791 5.354234 CACCGTTGTCAGCCTTATTAAAGAT 59.646 40.000 0.00 0.00 34.37 2.40
4747 4792 6.537301 CACCGTTGTCAGCCTTATTAAAGATA 59.463 38.462 0.00 0.00 34.37 1.98
4748 4793 6.761714 ACCGTTGTCAGCCTTATTAAAGATAG 59.238 38.462 0.00 0.00 34.37 2.08
4749 4794 6.984474 CCGTTGTCAGCCTTATTAAAGATAGA 59.016 38.462 0.00 0.00 34.37 1.98
4750 4795 7.494625 CCGTTGTCAGCCTTATTAAAGATAGAA 59.505 37.037 0.00 0.00 34.37 2.10
4751 4796 8.879759 CGTTGTCAGCCTTATTAAAGATAGAAA 58.120 33.333 0.00 0.00 34.37 2.52
4752 4797 9.989869 GTTGTCAGCCTTATTAAAGATAGAAAC 57.010 33.333 0.00 0.00 34.37 2.78
4753 4798 9.959721 TTGTCAGCCTTATTAAAGATAGAAACT 57.040 29.630 0.00 0.00 34.37 2.66
4754 4799 9.601217 TGTCAGCCTTATTAAAGATAGAAACTC 57.399 33.333 0.00 0.00 34.37 3.01
4755 4800 9.825109 GTCAGCCTTATTAAAGATAGAAACTCT 57.175 33.333 0.00 0.00 34.37 3.24
4756 4801 9.823647 TCAGCCTTATTAAAGATAGAAACTCTG 57.176 33.333 0.00 0.00 34.37 3.35
4757 4802 8.555361 CAGCCTTATTAAAGATAGAAACTCTGC 58.445 37.037 0.00 0.00 34.37 4.26
4758 4803 7.717436 AGCCTTATTAAAGATAGAAACTCTGCC 59.283 37.037 0.00 0.00 34.37 4.85
4759 4804 7.499232 GCCTTATTAAAGATAGAAACTCTGCCA 59.501 37.037 0.00 0.00 34.37 4.92
4760 4805 8.831550 CCTTATTAAAGATAGAAACTCTGCCAC 58.168 37.037 0.00 0.00 34.37 5.01
4761 4806 9.606631 CTTATTAAAGATAGAAACTCTGCCACT 57.393 33.333 0.00 0.00 34.37 4.00
4762 4807 9.959721 TTATTAAAGATAGAAACTCTGCCACTT 57.040 29.630 0.00 0.00 0.00 3.16
4763 4808 7.672983 TTAAAGATAGAAACTCTGCCACTTG 57.327 36.000 0.00 0.00 0.00 3.16
4764 4809 5.489792 AAGATAGAAACTCTGCCACTTGA 57.510 39.130 0.00 0.00 0.00 3.02
4765 4810 5.690464 AGATAGAAACTCTGCCACTTGAT 57.310 39.130 0.00 0.00 0.00 2.57
4766 4811 5.426504 AGATAGAAACTCTGCCACTTGATG 58.573 41.667 0.00 0.00 0.00 3.07
4767 4812 2.157738 AGAAACTCTGCCACTTGATGC 58.842 47.619 0.00 0.00 0.00 3.91
4768 4813 2.157738 GAAACTCTGCCACTTGATGCT 58.842 47.619 0.00 0.00 0.00 3.79
4769 4814 3.008375 AGAAACTCTGCCACTTGATGCTA 59.992 43.478 0.00 0.00 0.00 3.49
4770 4815 2.393271 ACTCTGCCACTTGATGCTAC 57.607 50.000 0.00 0.00 0.00 3.58
4771 4816 1.065854 ACTCTGCCACTTGATGCTACC 60.066 52.381 0.00 0.00 0.00 3.18
4772 4817 0.108186 TCTGCCACTTGATGCTACCG 60.108 55.000 0.00 0.00 0.00 4.02
4773 4818 1.709147 CTGCCACTTGATGCTACCGC 61.709 60.000 0.00 0.00 0.00 5.68
4774 4819 1.450312 GCCACTTGATGCTACCGCT 60.450 57.895 0.00 0.00 36.97 5.52
4775 4820 1.709147 GCCACTTGATGCTACCGCTG 61.709 60.000 0.00 0.00 36.97 5.18
4776 4821 1.709147 CCACTTGATGCTACCGCTGC 61.709 60.000 0.00 0.00 36.97 5.25
4777 4822 1.020861 CACTTGATGCTACCGCTGCA 61.021 55.000 0.00 0.00 44.95 4.41
4778 4823 0.321564 ACTTGATGCTACCGCTGCAA 60.322 50.000 0.00 0.00 44.01 4.08
4779 4824 0.097674 CTTGATGCTACCGCTGCAAC 59.902 55.000 0.00 0.00 44.01 4.17
4780 4825 0.605050 TTGATGCTACCGCTGCAACA 60.605 50.000 0.00 0.00 44.01 3.33
4781 4826 1.020861 TGATGCTACCGCTGCAACAG 61.021 55.000 0.00 0.00 44.01 3.16
4782 4827 0.740868 GATGCTACCGCTGCAACAGA 60.741 55.000 0.00 0.00 44.01 3.41
4783 4828 0.321564 ATGCTACCGCTGCAACAGAA 60.322 50.000 0.00 0.00 44.01 3.02
4784 4829 0.533978 TGCTACCGCTGCAACAGAAA 60.534 50.000 0.00 0.00 37.51 2.52
4785 4830 0.804989 GCTACCGCTGCAACAGAAAT 59.195 50.000 0.00 0.00 32.44 2.17
4786 4831 1.466360 GCTACCGCTGCAACAGAAATG 60.466 52.381 0.00 0.00 32.44 2.32
4787 4832 1.806542 CTACCGCTGCAACAGAAATGT 59.193 47.619 0.00 0.00 32.44 2.71
4788 4833 1.032014 ACCGCTGCAACAGAAATGTT 58.968 45.000 0.00 0.00 32.44 2.71
4796 4841 3.996150 CAACAGAAATGTTGTCAGGCT 57.004 42.857 11.93 0.00 42.87 4.58
4797 4842 4.311816 CAACAGAAATGTTGTCAGGCTT 57.688 40.909 11.93 0.00 42.87 4.35
4798 4843 5.437289 CAACAGAAATGTTGTCAGGCTTA 57.563 39.130 11.93 0.00 42.87 3.09
4799 4844 5.215160 CAACAGAAATGTTGTCAGGCTTAC 58.785 41.667 11.93 0.00 42.87 2.34
4800 4845 4.718961 ACAGAAATGTTGTCAGGCTTACT 58.281 39.130 0.00 0.00 0.00 2.24
4801 4846 4.757149 ACAGAAATGTTGTCAGGCTTACTC 59.243 41.667 0.00 0.00 0.00 2.59
4802 4847 4.756642 CAGAAATGTTGTCAGGCTTACTCA 59.243 41.667 0.00 0.78 0.00 3.41
4803 4848 5.239306 CAGAAATGTTGTCAGGCTTACTCAA 59.761 40.000 0.00 0.00 0.00 3.02
4804 4849 5.471456 AGAAATGTTGTCAGGCTTACTCAAG 59.529 40.000 0.00 0.00 34.66 3.02
4805 4850 4.623932 ATGTTGTCAGGCTTACTCAAGA 57.376 40.909 0.00 0.00 33.20 3.02
4806 4851 4.623932 TGTTGTCAGGCTTACTCAAGAT 57.376 40.909 0.00 0.00 33.20 2.40
4807 4852 4.318332 TGTTGTCAGGCTTACTCAAGATG 58.682 43.478 0.00 0.00 33.20 2.90
4808 4853 3.616956 TGTCAGGCTTACTCAAGATGG 57.383 47.619 0.00 0.00 33.20 3.51
4809 4854 2.284190 GTCAGGCTTACTCAAGATGGC 58.716 52.381 0.00 0.00 33.20 4.40
4810 4855 1.210478 TCAGGCTTACTCAAGATGGCC 59.790 52.381 0.00 0.00 39.82 5.36
4811 4856 1.065199 CAGGCTTACTCAAGATGGCCA 60.065 52.381 8.56 8.56 41.71 5.36
4812 4857 1.849039 AGGCTTACTCAAGATGGCCAT 59.151 47.619 20.96 20.96 41.71 4.40
4813 4858 2.243221 AGGCTTACTCAAGATGGCCATT 59.757 45.455 21.84 1.81 41.71 3.16
4814 4859 3.459598 AGGCTTACTCAAGATGGCCATTA 59.540 43.478 21.84 3.80 41.71 1.90
4815 4860 3.817647 GGCTTACTCAAGATGGCCATTAG 59.182 47.826 21.84 16.73 39.38 1.73
4816 4861 4.444876 GGCTTACTCAAGATGGCCATTAGA 60.445 45.833 21.84 16.45 39.38 2.10
4817 4862 5.312079 GCTTACTCAAGATGGCCATTAGAT 58.688 41.667 21.84 6.54 33.20 1.98
4818 4863 5.411053 GCTTACTCAAGATGGCCATTAGATC 59.589 44.000 21.84 7.54 33.20 2.75
4819 4864 6.499106 TTACTCAAGATGGCCATTAGATCA 57.501 37.500 21.84 6.21 0.00 2.92
4820 4865 4.712476 ACTCAAGATGGCCATTAGATCAC 58.288 43.478 21.84 4.80 0.00 3.06
4821 4866 4.411540 ACTCAAGATGGCCATTAGATCACT 59.588 41.667 21.84 7.41 0.00 3.41
4822 4867 4.965814 TCAAGATGGCCATTAGATCACTC 58.034 43.478 21.84 4.13 0.00 3.51
4823 4868 4.070716 CAAGATGGCCATTAGATCACTCC 58.929 47.826 21.84 2.32 0.00 3.85
4824 4869 3.321039 AGATGGCCATTAGATCACTCCA 58.679 45.455 21.84 0.00 0.00 3.86
4825 4870 3.915073 AGATGGCCATTAGATCACTCCAT 59.085 43.478 21.84 0.00 35.73 3.41
4826 4871 3.497103 TGGCCATTAGATCACTCCATG 57.503 47.619 0.00 0.00 0.00 3.66
4827 4872 2.157738 GGCCATTAGATCACTCCATGC 58.842 52.381 0.00 0.00 0.00 4.06
4828 4873 2.487805 GGCCATTAGATCACTCCATGCA 60.488 50.000 0.00 0.00 0.00 3.96
4829 4874 2.812591 GCCATTAGATCACTCCATGCAG 59.187 50.000 0.00 0.00 0.00 4.41
4830 4875 3.409570 CCATTAGATCACTCCATGCAGG 58.590 50.000 0.00 0.00 39.47 4.85
4831 4876 3.181447 CCATTAGATCACTCCATGCAGGT 60.181 47.826 0.00 0.00 39.02 4.00
4832 4877 4.040829 CCATTAGATCACTCCATGCAGGTA 59.959 45.833 0.00 0.00 39.02 3.08
4833 4878 4.944619 TTAGATCACTCCATGCAGGTAG 57.055 45.455 0.00 0.00 39.02 3.18
4834 4879 2.756907 AGATCACTCCATGCAGGTAGT 58.243 47.619 0.00 0.00 39.02 2.73
4835 4880 2.433604 AGATCACTCCATGCAGGTAGTG 59.566 50.000 16.91 16.91 42.25 2.74
4836 4881 1.644509 TCACTCCATGCAGGTAGTGT 58.355 50.000 21.18 0.69 41.90 3.55
4837 4882 1.977854 TCACTCCATGCAGGTAGTGTT 59.022 47.619 21.18 0.00 41.90 3.32
4838 4883 2.079158 CACTCCATGCAGGTAGTGTTG 58.921 52.381 15.08 0.00 39.08 3.33
4839 4884 1.699634 ACTCCATGCAGGTAGTGTTGT 59.300 47.619 0.00 0.00 39.02 3.32
4840 4885 2.903784 ACTCCATGCAGGTAGTGTTGTA 59.096 45.455 0.00 0.00 39.02 2.41
4841 4886 3.326588 ACTCCATGCAGGTAGTGTTGTAA 59.673 43.478 0.00 0.00 39.02 2.41
4842 4887 3.670625 TCCATGCAGGTAGTGTTGTAAC 58.329 45.455 0.00 0.00 39.02 2.50
4843 4888 3.071747 TCCATGCAGGTAGTGTTGTAACA 59.928 43.478 0.00 0.00 39.02 2.41
4844 4889 3.436704 CCATGCAGGTAGTGTTGTAACAG 59.563 47.826 0.00 0.00 40.05 3.16
4845 4890 4.314961 CATGCAGGTAGTGTTGTAACAGA 58.685 43.478 0.00 0.00 40.05 3.41
4846 4891 4.409718 TGCAGGTAGTGTTGTAACAGAA 57.590 40.909 0.00 0.00 40.05 3.02
4847 4892 4.124238 TGCAGGTAGTGTTGTAACAGAAC 58.876 43.478 0.00 0.04 40.05 3.01
4848 4893 4.124238 GCAGGTAGTGTTGTAACAGAACA 58.876 43.478 0.00 0.00 40.05 3.18
4849 4894 4.755123 GCAGGTAGTGTTGTAACAGAACAT 59.245 41.667 0.00 0.00 40.05 2.71
4850 4895 5.334105 GCAGGTAGTGTTGTAACAGAACATG 60.334 44.000 14.60 14.60 40.05 3.21
4851 4896 5.179368 CAGGTAGTGTTGTAACAGAACATGG 59.821 44.000 12.53 0.00 40.05 3.66
4852 4897 4.454504 GGTAGTGTTGTAACAGAACATGGG 59.545 45.833 0.00 0.00 40.05 4.00
4853 4898 4.164843 AGTGTTGTAACAGAACATGGGT 57.835 40.909 0.00 0.00 40.05 4.51
4854 4899 4.134563 AGTGTTGTAACAGAACATGGGTC 58.865 43.478 0.00 0.00 40.05 4.46
4855 4900 3.880490 GTGTTGTAACAGAACATGGGTCA 59.120 43.478 0.00 0.00 40.05 4.02
4856 4901 4.024048 GTGTTGTAACAGAACATGGGTCAG 60.024 45.833 0.00 0.00 40.05 3.51
4857 4902 4.134563 GTTGTAACAGAACATGGGTCAGT 58.865 43.478 0.00 0.00 0.00 3.41
4858 4903 5.163290 TGTTGTAACAGAACATGGGTCAGTA 60.163 40.000 0.00 0.00 34.30 2.74
4859 4904 5.147330 TGTAACAGAACATGGGTCAGTAG 57.853 43.478 0.00 0.00 0.00 2.57
4860 4905 2.770164 ACAGAACATGGGTCAGTAGC 57.230 50.000 0.00 0.00 0.00 3.58
4861 4906 1.977854 ACAGAACATGGGTCAGTAGCA 59.022 47.619 0.00 0.00 0.00 3.49
4862 4907 2.573462 ACAGAACATGGGTCAGTAGCAT 59.427 45.455 0.00 0.00 0.00 3.79
4863 4908 3.009473 ACAGAACATGGGTCAGTAGCATT 59.991 43.478 0.00 0.00 0.00 3.56
4864 4909 4.225042 ACAGAACATGGGTCAGTAGCATTA 59.775 41.667 0.00 0.00 0.00 1.90
4865 4910 4.572389 CAGAACATGGGTCAGTAGCATTAC 59.428 45.833 0.00 0.00 0.00 1.89
4866 4911 4.471386 AGAACATGGGTCAGTAGCATTACT 59.529 41.667 0.00 0.00 40.79 2.24
4877 4922 4.504858 AGTAGCATTACTGTAGTTGTGCC 58.495 43.478 13.94 4.63 38.69 5.01
4878 4923 3.703001 AGCATTACTGTAGTTGTGCCT 57.297 42.857 13.94 4.02 37.68 4.75
4879 4924 4.021102 AGCATTACTGTAGTTGTGCCTT 57.979 40.909 13.94 0.20 37.68 4.35
4880 4925 5.160607 AGCATTACTGTAGTTGTGCCTTA 57.839 39.130 13.94 0.00 37.68 2.69
4881 4926 4.935808 AGCATTACTGTAGTTGTGCCTTAC 59.064 41.667 13.94 0.00 37.68 2.34
4882 4927 4.201685 GCATTACTGTAGTTGTGCCTTACG 60.202 45.833 9.02 0.00 33.77 3.18
4883 4928 4.589216 TTACTGTAGTTGTGCCTTACGT 57.411 40.909 0.00 0.00 0.00 3.57
4884 4929 3.022607 ACTGTAGTTGTGCCTTACGTC 57.977 47.619 0.00 0.00 0.00 4.34
4885 4930 1.983605 CTGTAGTTGTGCCTTACGTCG 59.016 52.381 0.00 0.00 0.00 5.12
4886 4931 0.712222 GTAGTTGTGCCTTACGTCGC 59.288 55.000 0.00 0.00 0.00 5.19
4887 4932 0.314618 TAGTTGTGCCTTACGTCGCA 59.685 50.000 0.00 0.00 0.00 5.10
4888 4933 0.944311 AGTTGTGCCTTACGTCGCAG 60.944 55.000 5.24 0.00 35.20 5.18
4889 4934 1.666553 TTGTGCCTTACGTCGCAGG 60.667 57.895 5.24 6.69 35.20 4.85
4890 4935 2.813908 GTGCCTTACGTCGCAGGG 60.814 66.667 11.97 1.35 35.20 4.45
4891 4936 3.307906 TGCCTTACGTCGCAGGGT 61.308 61.111 11.97 0.00 0.00 4.34
4892 4937 1.978080 TGCCTTACGTCGCAGGGTA 60.978 57.895 11.97 0.00 0.00 3.69
4893 4938 1.216178 GCCTTACGTCGCAGGGTAA 59.784 57.895 11.97 0.00 0.00 2.85
4894 4939 0.179092 GCCTTACGTCGCAGGGTAAT 60.179 55.000 11.97 0.00 0.00 1.89
4895 4940 1.741394 GCCTTACGTCGCAGGGTAATT 60.741 52.381 11.97 0.00 0.00 1.40
4896 4941 1.931172 CCTTACGTCGCAGGGTAATTG 59.069 52.381 0.00 0.00 0.00 2.32
4897 4942 1.931172 CTTACGTCGCAGGGTAATTGG 59.069 52.381 0.00 0.00 0.00 3.16
4898 4943 0.460635 TACGTCGCAGGGTAATTGGC 60.461 55.000 0.00 0.00 0.00 4.52
4899 4944 1.449601 CGTCGCAGGGTAATTGGCT 60.450 57.895 0.00 0.00 0.00 4.75
4900 4945 1.429148 CGTCGCAGGGTAATTGGCTC 61.429 60.000 0.00 0.00 0.00 4.70
4901 4946 1.153449 TCGCAGGGTAATTGGCTCG 60.153 57.895 0.00 0.00 0.00 5.03
4902 4947 1.449601 CGCAGGGTAATTGGCTCGT 60.450 57.895 0.00 0.00 0.00 4.18
4903 4948 0.179094 CGCAGGGTAATTGGCTCGTA 60.179 55.000 0.00 0.00 0.00 3.43
4904 4949 1.583054 GCAGGGTAATTGGCTCGTAG 58.417 55.000 0.00 0.00 0.00 3.51
4905 4950 1.134491 GCAGGGTAATTGGCTCGTAGT 60.134 52.381 0.00 0.00 0.00 2.73
4906 4951 2.101917 GCAGGGTAATTGGCTCGTAGTA 59.898 50.000 0.00 0.00 0.00 1.82
4907 4952 3.714391 CAGGGTAATTGGCTCGTAGTAC 58.286 50.000 0.00 0.00 0.00 2.73
4908 4953 3.383825 CAGGGTAATTGGCTCGTAGTACT 59.616 47.826 0.00 0.00 0.00 2.73
4909 4954 3.383825 AGGGTAATTGGCTCGTAGTACTG 59.616 47.826 5.39 0.00 0.00 2.74
4910 4955 3.121544 GGTAATTGGCTCGTAGTACTGC 58.878 50.000 5.39 2.60 0.00 4.40
4911 4956 3.181478 GGTAATTGGCTCGTAGTACTGCT 60.181 47.826 5.39 0.00 0.00 4.24
4912 4957 4.037208 GGTAATTGGCTCGTAGTACTGCTA 59.963 45.833 5.39 0.00 0.00 3.49
4913 4958 3.712091 ATTGGCTCGTAGTACTGCTAC 57.288 47.619 5.39 0.00 44.99 3.58
4914 4959 1.386533 TGGCTCGTAGTACTGCTACC 58.613 55.000 5.39 6.26 45.51 3.18
4915 4960 1.064906 TGGCTCGTAGTACTGCTACCT 60.065 52.381 5.39 0.00 45.51 3.08
4916 4961 2.022934 GGCTCGTAGTACTGCTACCTT 58.977 52.381 5.39 0.00 45.51 3.50
4917 4962 2.033174 GGCTCGTAGTACTGCTACCTTC 59.967 54.545 5.39 0.00 45.51 3.46
4918 4963 2.681848 GCTCGTAGTACTGCTACCTTCA 59.318 50.000 5.39 0.00 45.51 3.02
4919 4964 3.128242 GCTCGTAGTACTGCTACCTTCAA 59.872 47.826 5.39 0.00 45.51 2.69
4920 4965 4.380233 GCTCGTAGTACTGCTACCTTCAAA 60.380 45.833 5.39 0.00 45.51 2.69
4976 5220 6.978024 TTGTGTGTTTGTTATGCGATTTAC 57.022 33.333 0.00 0.00 0.00 2.01
4992 5236 5.503357 GCGATTTACGGATTTATCTGTTGCA 60.503 40.000 9.33 0.00 43.59 4.08
5027 5271 4.284234 TGCTATATGCTGCTTGAGGTCATA 59.716 41.667 0.00 0.00 43.37 2.15
5067 5311 7.646884 AGGTTCTTCTTCCTTTGGATGAATAT 58.353 34.615 13.04 0.18 42.33 1.28
5068 5312 8.781951 AGGTTCTTCTTCCTTTGGATGAATATA 58.218 33.333 13.04 3.21 42.33 0.86
5084 5328 6.884472 TGAATATAGGTGAGGAAAGGACAA 57.116 37.500 0.00 0.00 0.00 3.18
5136 5380 7.177392 CCAAGAAGGTTAAGGATTCAGAAATGT 59.823 37.037 0.00 0.00 0.00 2.71
5188 5463 2.743636 TGGGAGTGACTTCGAATCAC 57.256 50.000 22.44 22.44 45.70 3.06
5196 5471 3.813166 GTGACTTCGAATCACTGGGAAAA 59.187 43.478 22.55 0.00 42.68 2.29
5216 5491 4.536364 AATGTATCATACTTGCACACGC 57.464 40.909 0.00 0.00 39.24 5.34
5219 5494 1.372582 ATCATACTTGCACACGCTGG 58.627 50.000 0.00 0.00 39.64 4.85
5222 5497 0.677731 ATACTTGCACACGCTGGCAT 60.678 50.000 0.00 0.00 40.17 4.40
5225 5500 2.791396 CTTGCACACGCTGGCATGTC 62.791 60.000 0.00 0.00 40.17 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.452122 CGAAAACCGTCACAATCCGC 60.452 55.000 0.00 0.00 0.00 5.54
1 2 0.452122 GCGAAAACCGTCACAATCCG 60.452 55.000 0.00 0.00 41.15 4.18
2 3 0.109919 GGCGAAAACCGTCACAATCC 60.110 55.000 0.00 0.00 43.50 3.01
3 4 0.109919 GGGCGAAAACCGTCACAATC 60.110 55.000 0.00 0.00 46.37 2.67
5 6 2.535788 CGGGCGAAAACCGTCACAA 61.536 57.895 0.00 0.00 46.37 3.33
12 13 1.007038 GGAAAACCGGGCGAAAACC 60.007 57.895 6.32 0.00 0.00 3.27
13 14 1.370778 CGGAAAACCGGGCGAAAAC 60.371 57.895 6.32 0.00 0.00 2.43
15 16 0.533755 TAACGGAAAACCGGGCGAAA 60.534 50.000 6.32 0.00 37.53 3.46
16 17 0.533755 TTAACGGAAAACCGGGCGAA 60.534 50.000 6.32 0.00 37.53 4.70
17 18 0.321475 ATTAACGGAAAACCGGGCGA 60.321 50.000 6.32 0.00 37.53 5.54
18 19 0.522626 AATTAACGGAAAACCGGGCG 59.477 50.000 6.32 0.00 37.53 6.13
19 20 3.191162 AGTTAATTAACGGAAAACCGGGC 59.809 43.478 19.92 0.00 40.96 6.13
20 21 4.379708 CCAGTTAATTAACGGAAAACCGGG 60.380 45.833 24.48 11.88 40.96 5.73
21 22 4.379708 CCCAGTTAATTAACGGAAAACCGG 60.380 45.833 26.78 16.91 40.96 5.28
22 23 4.725359 CCCAGTTAATTAACGGAAAACCG 58.275 43.478 26.78 13.36 40.96 4.44
23 24 4.022155 TGCCCAGTTAATTAACGGAAAACC 60.022 41.667 26.78 14.02 40.96 3.27
24 25 5.123805 TGCCCAGTTAATTAACGGAAAAC 57.876 39.130 26.78 18.05 40.96 2.43
25 26 5.786264 TTGCCCAGTTAATTAACGGAAAA 57.214 34.783 26.78 20.29 40.96 2.29
26 27 5.986501 ATTGCCCAGTTAATTAACGGAAA 57.013 34.783 26.78 21.17 40.96 3.13
27 28 5.712917 AGAATTGCCCAGTTAATTAACGGAA 59.287 36.000 26.78 18.98 40.96 4.30
28 29 5.258051 AGAATTGCCCAGTTAATTAACGGA 58.742 37.500 26.78 13.37 40.96 4.69
29 30 5.357032 AGAGAATTGCCCAGTTAATTAACGG 59.643 40.000 19.92 21.15 40.96 4.44
30 31 6.436843 AGAGAATTGCCCAGTTAATTAACG 57.563 37.500 19.92 15.03 40.96 3.18
31 32 7.970614 CAGAAGAGAATTGCCCAGTTAATTAAC 59.029 37.037 18.77 18.77 36.46 2.01
32 33 7.362920 GCAGAAGAGAATTGCCCAGTTAATTAA 60.363 37.037 0.00 0.00 31.79 1.40
33 34 6.095440 GCAGAAGAGAATTGCCCAGTTAATTA 59.905 38.462 0.00 0.00 31.79 1.40
34 35 5.105595 GCAGAAGAGAATTGCCCAGTTAATT 60.106 40.000 0.00 0.00 31.79 1.40
35 36 4.400567 GCAGAAGAGAATTGCCCAGTTAAT 59.599 41.667 0.00 0.00 31.79 1.40
36 37 3.758554 GCAGAAGAGAATTGCCCAGTTAA 59.241 43.478 0.00 0.00 31.79 2.01
37 38 3.009473 AGCAGAAGAGAATTGCCCAGTTA 59.991 43.478 0.00 0.00 38.58 2.24
38 39 2.165998 GCAGAAGAGAATTGCCCAGTT 58.834 47.619 0.00 0.00 31.79 3.16
39 40 1.353694 AGCAGAAGAGAATTGCCCAGT 59.646 47.619 0.00 0.00 38.58 4.00
40 41 2.125773 AGCAGAAGAGAATTGCCCAG 57.874 50.000 0.00 0.00 38.58 4.45
41 42 2.592102 AAGCAGAAGAGAATTGCCCA 57.408 45.000 0.00 0.00 38.58 5.36
42 43 5.588958 AATAAAGCAGAAGAGAATTGCCC 57.411 39.130 0.00 0.00 38.58 5.36
43 44 7.650903 CCATTAATAAAGCAGAAGAGAATTGCC 59.349 37.037 0.00 0.00 38.58 4.52
44 45 8.408601 TCCATTAATAAAGCAGAAGAGAATTGC 58.591 33.333 0.00 0.00 38.09 3.56
47 48 9.857656 TCATCCATTAATAAAGCAGAAGAGAAT 57.142 29.630 0.00 0.00 0.00 2.40
48 49 9.334947 CTCATCCATTAATAAAGCAGAAGAGAA 57.665 33.333 0.00 0.00 0.00 2.87
49 50 7.935755 CCTCATCCATTAATAAAGCAGAAGAGA 59.064 37.037 0.00 0.00 0.00 3.10
50 51 7.308469 GCCTCATCCATTAATAAAGCAGAAGAG 60.308 40.741 0.00 0.00 0.00 2.85
51 52 6.488006 GCCTCATCCATTAATAAAGCAGAAGA 59.512 38.462 0.00 0.00 0.00 2.87
52 53 6.263842 TGCCTCATCCATTAATAAAGCAGAAG 59.736 38.462 0.00 0.00 0.00 2.85
53 54 6.128486 TGCCTCATCCATTAATAAAGCAGAA 58.872 36.000 0.00 0.00 0.00 3.02
54 55 5.693961 TGCCTCATCCATTAATAAAGCAGA 58.306 37.500 0.00 0.00 0.00 4.26
55 56 6.395426 TTGCCTCATCCATTAATAAAGCAG 57.605 37.500 0.00 0.00 0.00 4.24
56 57 6.788598 TTTGCCTCATCCATTAATAAAGCA 57.211 33.333 0.00 0.00 0.00 3.91
57 58 7.664758 AGATTTGCCTCATCCATTAATAAAGC 58.335 34.615 0.00 0.00 0.00 3.51
60 61 9.820725 CAAAAGATTTGCCTCATCCATTAATAA 57.179 29.630 0.00 0.00 0.00 1.40
61 62 7.927629 GCAAAAGATTTGCCTCATCCATTAATA 59.072 33.333 15.12 0.00 39.38 0.98
62 63 6.764560 GCAAAAGATTTGCCTCATCCATTAAT 59.235 34.615 15.12 0.00 39.38 1.40
63 64 6.108015 GCAAAAGATTTGCCTCATCCATTAA 58.892 36.000 15.12 0.00 39.38 1.40
64 65 5.663456 GCAAAAGATTTGCCTCATCCATTA 58.337 37.500 15.12 0.00 39.38 1.90
65 66 4.510571 GCAAAAGATTTGCCTCATCCATT 58.489 39.130 15.12 0.00 39.38 3.16
66 67 4.133013 GCAAAAGATTTGCCTCATCCAT 57.867 40.909 15.12 0.00 39.38 3.41
67 68 3.598019 GCAAAAGATTTGCCTCATCCA 57.402 42.857 15.12 0.00 39.38 3.41
75 76 2.438868 AACGGAGGCAAAAGATTTGC 57.561 45.000 17.18 17.18 44.22 3.68
76 77 3.976169 TGAAACGGAGGCAAAAGATTTG 58.024 40.909 0.00 0.00 0.00 2.32
77 78 4.664150 TTGAAACGGAGGCAAAAGATTT 57.336 36.364 0.00 0.00 0.00 2.17
78 79 4.664150 TTTGAAACGGAGGCAAAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
79 80 4.664150 TTTTGAAACGGAGGCAAAAGAT 57.336 36.364 0.00 0.00 36.80 2.40
80 81 4.457834 TTTTTGAAACGGAGGCAAAAGA 57.542 36.364 0.00 0.00 41.02 2.52
102 103 8.654094 AGAAAAGACAGGAATCCATCAATTTTT 58.346 29.630 0.61 2.47 0.00 1.94
103 104 8.198807 AGAAAAGACAGGAATCCATCAATTTT 57.801 30.769 0.61 3.12 0.00 1.82
104 105 7.787623 AGAAAAGACAGGAATCCATCAATTT 57.212 32.000 0.61 4.84 0.00 1.82
105 106 8.112183 ACTAGAAAAGACAGGAATCCATCAATT 58.888 33.333 0.61 0.00 0.00 2.32
223 224 8.691661 ACAACAAGTAGATAAACCAAAGACAT 57.308 30.769 0.00 0.00 0.00 3.06
233 234 7.718272 ACGTAAGCAACAACAAGTAGATAAA 57.282 32.000 0.00 0.00 45.62 1.40
254 255 9.538508 AAAAATAACTACAGTTCTGAACTACGT 57.461 29.630 21.65 17.99 40.46 3.57
286 287 9.533253 CTGTCCAAACTTACAGATTTTCAAAAT 57.467 29.630 0.00 0.00 44.79 1.82
287 288 7.978975 CCTGTCCAAACTTACAGATTTTCAAAA 59.021 33.333 4.11 0.00 44.79 2.44
288 289 7.417342 CCCTGTCCAAACTTACAGATTTTCAAA 60.417 37.037 4.11 0.00 44.79 2.69
289 290 6.040391 CCCTGTCCAAACTTACAGATTTTCAA 59.960 38.462 4.11 0.00 44.79 2.69
311 312 7.880160 TGAAATATGATGTTCGAATTTCCCT 57.120 32.000 0.00 0.00 36.28 4.20
326 327 8.632679 GCATCCTTCAACCTTTATGAAATATGA 58.367 33.333 11.58 0.00 36.43 2.15
339 342 0.693049 AGTTCCGCATCCTTCAACCT 59.307 50.000 0.00 0.00 0.00 3.50
343 346 3.904800 TCATAAGTTCCGCATCCTTCA 57.095 42.857 0.00 0.00 0.00 3.02
344 347 5.123979 AGTTTTCATAAGTTCCGCATCCTTC 59.876 40.000 0.00 0.00 0.00 3.46
346 349 4.589908 AGTTTTCATAAGTTCCGCATCCT 58.410 39.130 0.00 0.00 0.00 3.24
348 351 5.569059 CACAAGTTTTCATAAGTTCCGCATC 59.431 40.000 0.00 0.00 0.00 3.91
349 352 5.009610 ACACAAGTTTTCATAAGTTCCGCAT 59.990 36.000 0.00 0.00 0.00 4.73
350 353 4.336993 ACACAAGTTTTCATAAGTTCCGCA 59.663 37.500 0.00 0.00 0.00 5.69
351 354 4.855531 ACACAAGTTTTCATAAGTTCCGC 58.144 39.130 0.00 0.00 0.00 5.54
352 355 7.111041 CGTAAACACAAGTTTTCATAAGTTCCG 59.889 37.037 0.00 0.00 45.32 4.30
365 368 4.408694 GTGCAAACTCGTAAACACAAGTT 58.591 39.130 0.00 0.00 40.40 2.66
415 420 8.559536 CAAGAACACACAATGTATAGAAACTGT 58.440 33.333 0.00 0.00 42.31 3.55
422 427 7.521529 CCTGAACAAGAACACACAATGTATAG 58.478 38.462 0.00 0.00 42.31 1.31
432 437 2.435805 AGAGAGCCTGAACAAGAACACA 59.564 45.455 0.00 0.00 0.00 3.72
486 499 6.879367 AATCCCCAAACATCATTTTCTCAT 57.121 33.333 0.00 0.00 0.00 2.90
487 500 6.684897 AAATCCCCAAACATCATTTTCTCA 57.315 33.333 0.00 0.00 0.00 3.27
515 528 3.879892 TCATGACGTGACACCAATCAAAA 59.120 39.130 0.00 0.00 0.00 2.44
545 559 7.985184 ACGACAAGAATAATAATAACTGGAGCA 59.015 33.333 0.00 0.00 0.00 4.26
555 569 7.377766 ACAGCAACACGACAAGAATAATAAT 57.622 32.000 0.00 0.00 0.00 1.28
561 575 3.728845 AGTACAGCAACACGACAAGAAT 58.271 40.909 0.00 0.00 0.00 2.40
570 584 6.362820 GTGTCTTAACTCTAGTACAGCAACAC 59.637 42.308 0.00 0.00 0.00 3.32
583 605 6.649557 CGTCCCAAAATAAGTGTCTTAACTCT 59.350 38.462 0.00 0.00 0.00 3.24
584 606 6.128363 CCGTCCCAAAATAAGTGTCTTAACTC 60.128 42.308 0.00 0.00 0.00 3.01
585 607 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
586 608 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
587 609 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
588 610 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
590 612 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
591 613 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
592 614 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
593 615 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
594 616 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
595 617 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
596 618 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
598 620 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
600 622 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
601 623 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
602 624 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
603 625 2.378378 ATAAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
605 627 6.710278 ACTCTATATAAGTACTCCCTCCGTC 58.290 44.000 0.00 0.00 0.00 4.79
606 628 6.271857 TGACTCTATATAAGTACTCCCTCCGT 59.728 42.308 0.00 0.00 0.00 4.69
607 629 6.709281 TGACTCTATATAAGTACTCCCTCCG 58.291 44.000 0.00 0.00 0.00 4.63
608 630 8.330247 TCATGACTCTATATAAGTACTCCCTCC 58.670 40.741 0.00 0.00 0.00 4.30
609 631 9.742144 TTCATGACTCTATATAAGTACTCCCTC 57.258 37.037 0.00 0.00 0.00 4.30
614 636 9.680315 GCGTTTTCATGACTCTATATAAGTACT 57.320 33.333 0.00 0.00 0.00 2.73
615 637 9.680315 AGCGTTTTCATGACTCTATATAAGTAC 57.320 33.333 0.00 0.00 0.00 2.73
666 688 3.751518 AGTCCCAAAATTACGAGCAAGT 58.248 40.909 0.00 0.00 0.00 3.16
682 704 4.760204 ACTTGCACACATAACTAAAGTCCC 59.240 41.667 0.00 0.00 0.00 4.46
692 714 4.558496 GCTGGCTAAAACTTGCACACATAA 60.558 41.667 0.00 0.00 0.00 1.90
696 718 1.066908 TGCTGGCTAAAACTTGCACAC 59.933 47.619 0.00 0.00 0.00 3.82
698 720 1.608590 TCTGCTGGCTAAAACTTGCAC 59.391 47.619 0.00 0.00 0.00 4.57
740 762 9.683069 GACACTCAAACAATTTTTGACATCTAT 57.317 29.630 10.04 0.00 34.96 1.98
795 817 4.097418 AGCCATTCTGTAACAGAGGTACT 58.903 43.478 0.00 0.00 41.75 2.73
916 938 8.567948 ACATCATTCCGGAATAAATTGTACATC 58.432 33.333 28.76 0.00 0.00 3.06
938 960 8.560374 GGCCAACTTCTAGATTTTATGTACATC 58.440 37.037 12.68 0.00 0.00 3.06
947 969 4.289672 TCAGAGGGCCAACTTCTAGATTTT 59.710 41.667 6.18 0.00 0.00 1.82
1019 1046 1.226101 CGTGCATAACGCTTGCCTG 60.226 57.895 0.00 0.00 46.99 4.85
1393 1423 5.163426 CCTGCTCAACTTCTCTATCATCTGT 60.163 44.000 0.00 0.00 0.00 3.41
1533 1563 7.982919 TGATAAGGATCTTGAAATTTGGCAATG 59.017 33.333 0.00 0.00 32.79 2.82
1695 1725 4.962362 ACAACTTTCCCCATTTTCTTGAGT 59.038 37.500 0.00 0.00 0.00 3.41
1802 1832 3.070476 TCAGCACATATTCTTGTGGCA 57.930 42.857 6.70 0.00 45.69 4.92
1932 1962 4.492604 GGCAGCACCCAACAGTTA 57.507 55.556 0.00 0.00 0.00 2.24
1950 1980 3.885724 AAAGCCCCGTAATTTCCATTG 57.114 42.857 0.00 0.00 0.00 2.82
2025 2055 4.472833 ACCCTGGATAGATTCTGATATGCC 59.527 45.833 0.00 0.00 0.00 4.40
2334 2364 2.300956 TCTCAGCTGACTTGTCTCCT 57.699 50.000 13.74 0.00 0.00 3.69
2358 2388 8.251026 TGACTCGTAATCTTAAGATCAACACAT 58.749 33.333 18.19 3.82 32.75 3.21
2382 2412 7.014134 TCAGCAAGTTTTTCCTTGTCATATTGA 59.986 33.333 0.00 0.00 43.03 2.57
3559 3589 2.301583 TCGTCTGAACATCCATGAACCA 59.698 45.455 0.00 0.00 0.00 3.67
3710 3740 8.986477 AACAATTGAATCCTGTAAATACTTGC 57.014 30.769 13.59 0.00 0.00 4.01
3840 3876 3.726235 CGTCATAGTGCTCGTTGACATAG 59.274 47.826 17.98 4.93 38.68 2.23
3899 3935 4.142687 ACAAACGTGCTTGGCTATCATAAC 60.143 41.667 5.07 0.00 0.00 1.89
3930 3966 3.677424 GCGCCTCACTAATATCCTCATCC 60.677 52.174 0.00 0.00 0.00 3.51
3933 3969 2.297315 CAGCGCCTCACTAATATCCTCA 59.703 50.000 2.29 0.00 0.00 3.86
3939 3975 4.672587 ATTCTTCAGCGCCTCACTAATA 57.327 40.909 2.29 0.00 0.00 0.98
4050 4089 1.586154 AATTCAAAGCCTGCGGACCG 61.586 55.000 10.29 10.29 0.00 4.79
4056 4095 1.063031 GCGTCAAATTCAAAGCCTGC 58.937 50.000 0.00 0.00 0.00 4.85
4073 4112 0.527565 CATTTCACCAAAGGGGAGCG 59.472 55.000 0.00 0.00 36.04 5.03
4080 4119 3.354089 AGCACGTTCATTTCACCAAAG 57.646 42.857 0.00 0.00 0.00 2.77
4196 4235 2.022934 TGTTCAGCACAGAAACATGCA 58.977 42.857 0.00 0.00 44.59 3.96
4292 4331 5.533482 ACTATGACTTACATCGATGAAGCC 58.467 41.667 31.33 20.38 40.07 4.35
4389 4428 4.277174 CCACAACAGTGCAATACAACCTAA 59.723 41.667 0.00 0.00 31.87 2.69
4477 4516 7.182761 GTGCATGTAATCTGAGTAAACACATC 58.817 38.462 0.00 0.00 0.00 3.06
4487 4526 3.314357 CACATGGGTGCATGTAATCTGAG 59.686 47.826 0.00 0.00 43.24 3.35
4637 4682 1.066143 AGGATTGCCACGACAGGTAAG 60.066 52.381 0.00 0.00 36.69 2.34
4691 4736 6.951256 TTCTAGACACGAATCACTCATTTG 57.049 37.500 0.00 0.00 32.50 2.32
4700 4745 5.174761 GTGCATGAGATTCTAGACACGAATC 59.825 44.000 0.00 4.96 44.38 2.52
4701 4746 5.046529 GTGCATGAGATTCTAGACACGAAT 58.953 41.667 0.00 0.00 34.01 3.34
4702 4747 4.424626 GTGCATGAGATTCTAGACACGAA 58.575 43.478 0.00 0.00 0.00 3.85
4703 4748 3.181486 GGTGCATGAGATTCTAGACACGA 60.181 47.826 0.00 0.00 0.00 4.35
4704 4749 3.119291 GGTGCATGAGATTCTAGACACG 58.881 50.000 0.00 0.00 0.00 4.49
4705 4750 3.119291 CGGTGCATGAGATTCTAGACAC 58.881 50.000 0.00 0.00 0.00 3.67
4706 4751 2.760650 ACGGTGCATGAGATTCTAGACA 59.239 45.455 0.00 0.00 0.00 3.41
4707 4752 3.444703 ACGGTGCATGAGATTCTAGAC 57.555 47.619 0.00 0.00 0.00 2.59
4708 4753 3.195610 ACAACGGTGCATGAGATTCTAGA 59.804 43.478 0.00 0.00 0.00 2.43
4709 4754 3.525537 ACAACGGTGCATGAGATTCTAG 58.474 45.455 0.00 0.00 0.00 2.43
4710 4755 3.056179 TGACAACGGTGCATGAGATTCTA 60.056 43.478 0.00 0.00 0.00 2.10
4711 4756 2.289631 TGACAACGGTGCATGAGATTCT 60.290 45.455 0.00 0.00 0.00 2.40
4712 4757 2.076100 TGACAACGGTGCATGAGATTC 58.924 47.619 0.00 0.00 0.00 2.52
4713 4758 2.079158 CTGACAACGGTGCATGAGATT 58.921 47.619 0.00 0.00 0.00 2.40
4714 4759 1.730501 CTGACAACGGTGCATGAGAT 58.269 50.000 0.00 0.00 0.00 2.75
4715 4760 0.950555 GCTGACAACGGTGCATGAGA 60.951 55.000 0.00 0.00 0.00 3.27
4716 4761 1.499056 GCTGACAACGGTGCATGAG 59.501 57.895 0.00 0.00 0.00 2.90
4717 4762 1.965930 GGCTGACAACGGTGCATGA 60.966 57.895 0.00 0.00 0.00 3.07
4718 4763 1.518056 AAGGCTGACAACGGTGCATG 61.518 55.000 0.00 0.00 0.00 4.06
4719 4764 0.036164 TAAGGCTGACAACGGTGCAT 59.964 50.000 0.00 0.00 0.00 3.96
4720 4765 0.036164 ATAAGGCTGACAACGGTGCA 59.964 50.000 0.00 0.00 0.00 4.57
4721 4766 1.165270 AATAAGGCTGACAACGGTGC 58.835 50.000 0.00 0.00 0.00 5.01
4722 4767 4.693566 TCTTTAATAAGGCTGACAACGGTG 59.306 41.667 0.00 0.00 32.02 4.94
4723 4768 4.901868 TCTTTAATAAGGCTGACAACGGT 58.098 39.130 0.00 0.00 32.02 4.83
4724 4769 6.984474 TCTATCTTTAATAAGGCTGACAACGG 59.016 38.462 0.00 0.00 32.02 4.44
4725 4770 8.420374 TTCTATCTTTAATAAGGCTGACAACG 57.580 34.615 0.00 0.00 32.02 4.10
4726 4771 9.989869 GTTTCTATCTTTAATAAGGCTGACAAC 57.010 33.333 0.00 0.00 32.02 3.32
4727 4772 9.959721 AGTTTCTATCTTTAATAAGGCTGACAA 57.040 29.630 0.00 0.00 32.02 3.18
4728 4773 9.601217 GAGTTTCTATCTTTAATAAGGCTGACA 57.399 33.333 0.00 0.00 32.02 3.58
4729 4774 9.825109 AGAGTTTCTATCTTTAATAAGGCTGAC 57.175 33.333 0.00 0.00 32.02 3.51
4730 4775 9.823647 CAGAGTTTCTATCTTTAATAAGGCTGA 57.176 33.333 0.00 0.00 32.02 4.26
4731 4776 8.555361 GCAGAGTTTCTATCTTTAATAAGGCTG 58.445 37.037 0.00 0.00 32.02 4.85
4732 4777 7.717436 GGCAGAGTTTCTATCTTTAATAAGGCT 59.283 37.037 0.00 0.00 32.02 4.58
4733 4778 7.499232 TGGCAGAGTTTCTATCTTTAATAAGGC 59.501 37.037 0.00 0.00 32.02 4.35
4734 4779 8.831550 GTGGCAGAGTTTCTATCTTTAATAAGG 58.168 37.037 0.00 0.00 32.02 2.69
4735 4780 9.606631 AGTGGCAGAGTTTCTATCTTTAATAAG 57.393 33.333 0.00 0.00 0.00 1.73
4736 4781 9.959721 AAGTGGCAGAGTTTCTATCTTTAATAA 57.040 29.630 0.00 0.00 0.00 1.40
4737 4782 9.383519 CAAGTGGCAGAGTTTCTATCTTTAATA 57.616 33.333 0.00 0.00 0.00 0.98
4738 4783 8.103305 TCAAGTGGCAGAGTTTCTATCTTTAAT 58.897 33.333 0.00 0.00 0.00 1.40
4739 4784 7.450074 TCAAGTGGCAGAGTTTCTATCTTTAA 58.550 34.615 0.00 0.00 0.00 1.52
4740 4785 7.004555 TCAAGTGGCAGAGTTTCTATCTTTA 57.995 36.000 0.00 0.00 0.00 1.85
4741 4786 5.869579 TCAAGTGGCAGAGTTTCTATCTTT 58.130 37.500 0.00 0.00 0.00 2.52
4742 4787 5.489792 TCAAGTGGCAGAGTTTCTATCTT 57.510 39.130 0.00 0.00 0.00 2.40
4743 4788 5.426504 CATCAAGTGGCAGAGTTTCTATCT 58.573 41.667 0.00 0.00 0.00 1.98
4744 4789 4.034975 GCATCAAGTGGCAGAGTTTCTATC 59.965 45.833 0.00 0.00 0.00 2.08
4745 4790 3.944015 GCATCAAGTGGCAGAGTTTCTAT 59.056 43.478 0.00 0.00 0.00 1.98
4746 4791 3.008375 AGCATCAAGTGGCAGAGTTTCTA 59.992 43.478 0.00 0.00 0.00 2.10
4747 4792 2.157738 GCATCAAGTGGCAGAGTTTCT 58.842 47.619 0.00 0.00 0.00 2.52
4748 4793 2.157738 AGCATCAAGTGGCAGAGTTTC 58.842 47.619 0.00 0.00 0.00 2.78
4749 4794 2.283145 AGCATCAAGTGGCAGAGTTT 57.717 45.000 0.00 0.00 0.00 2.66
4750 4795 2.616510 GGTAGCATCAAGTGGCAGAGTT 60.617 50.000 0.00 0.00 0.00 3.01
4751 4796 1.065854 GGTAGCATCAAGTGGCAGAGT 60.066 52.381 0.00 0.00 0.00 3.24
4752 4797 1.661341 GGTAGCATCAAGTGGCAGAG 58.339 55.000 0.00 0.00 0.00 3.35
4753 4798 0.108186 CGGTAGCATCAAGTGGCAGA 60.108 55.000 0.00 0.00 0.00 4.26
4754 4799 1.709147 GCGGTAGCATCAAGTGGCAG 61.709 60.000 0.00 0.00 44.35 4.85
4755 4800 1.745115 GCGGTAGCATCAAGTGGCA 60.745 57.895 0.00 0.00 44.35 4.92
4756 4801 3.102097 GCGGTAGCATCAAGTGGC 58.898 61.111 0.00 0.00 44.35 5.01
4766 4811 0.804989 ATTTCTGTTGCAGCGGTAGC 59.195 50.000 9.38 0.00 45.58 3.58
4767 4812 1.806542 ACATTTCTGTTGCAGCGGTAG 59.193 47.619 9.38 0.00 28.70 3.18
4768 4813 1.890876 ACATTTCTGTTGCAGCGGTA 58.109 45.000 9.38 0.00 28.70 4.02
4769 4814 1.032014 AACATTTCTGTTGCAGCGGT 58.968 45.000 9.38 0.00 43.92 5.68
4770 4815 3.871775 AACATTTCTGTTGCAGCGG 57.128 47.368 2.41 2.41 43.92 5.52
4777 4822 5.133221 AGTAAGCCTGACAACATTTCTGTT 58.867 37.500 0.00 0.00 46.54 3.16
4778 4823 4.718961 AGTAAGCCTGACAACATTTCTGT 58.281 39.130 0.00 0.00 37.12 3.41
4779 4824 4.756642 TGAGTAAGCCTGACAACATTTCTG 59.243 41.667 0.00 0.00 0.00 3.02
4780 4825 4.973168 TGAGTAAGCCTGACAACATTTCT 58.027 39.130 0.00 0.00 0.00 2.52
4781 4826 5.470098 TCTTGAGTAAGCCTGACAACATTTC 59.530 40.000 0.00 0.00 33.82 2.17
4782 4827 5.376625 TCTTGAGTAAGCCTGACAACATTT 58.623 37.500 0.00 0.00 33.82 2.32
4783 4828 4.973168 TCTTGAGTAAGCCTGACAACATT 58.027 39.130 0.00 0.00 33.82 2.71
4784 4829 4.623932 TCTTGAGTAAGCCTGACAACAT 57.376 40.909 0.00 0.00 33.82 2.71
4785 4830 4.318332 CATCTTGAGTAAGCCTGACAACA 58.682 43.478 0.00 0.00 33.82 3.33
4786 4831 3.686726 CCATCTTGAGTAAGCCTGACAAC 59.313 47.826 0.00 0.00 33.82 3.32
4787 4832 3.869912 GCCATCTTGAGTAAGCCTGACAA 60.870 47.826 0.00 0.00 33.82 3.18
4788 4833 2.355108 GCCATCTTGAGTAAGCCTGACA 60.355 50.000 0.00 0.00 33.82 3.58
4789 4834 2.284190 GCCATCTTGAGTAAGCCTGAC 58.716 52.381 0.00 0.00 33.82 3.51
4790 4835 1.210478 GGCCATCTTGAGTAAGCCTGA 59.790 52.381 0.00 0.00 37.42 3.86
4791 4836 1.065199 TGGCCATCTTGAGTAAGCCTG 60.065 52.381 0.00 0.00 41.08 4.85
4792 4837 1.289160 TGGCCATCTTGAGTAAGCCT 58.711 50.000 0.00 0.00 41.08 4.58
4793 4838 2.355010 ATGGCCATCTTGAGTAAGCC 57.645 50.000 14.09 0.00 40.87 4.35
4794 4839 4.708177 TCTAATGGCCATCTTGAGTAAGC 58.292 43.478 21.08 0.00 33.82 3.09
4795 4840 6.426328 GTGATCTAATGGCCATCTTGAGTAAG 59.574 42.308 21.08 6.81 35.16 2.34
4796 4841 6.100279 AGTGATCTAATGGCCATCTTGAGTAA 59.900 38.462 21.08 4.91 0.00 2.24
4797 4842 5.604231 AGTGATCTAATGGCCATCTTGAGTA 59.396 40.000 21.08 5.48 0.00 2.59
4798 4843 4.411540 AGTGATCTAATGGCCATCTTGAGT 59.588 41.667 21.08 4.38 0.00 3.41
4799 4844 4.970711 AGTGATCTAATGGCCATCTTGAG 58.029 43.478 21.08 13.96 0.00 3.02
4800 4845 4.202398 GGAGTGATCTAATGGCCATCTTGA 60.202 45.833 21.08 17.19 0.00 3.02
4801 4846 4.070716 GGAGTGATCTAATGGCCATCTTG 58.929 47.826 21.08 12.22 0.00 3.02
4802 4847 3.718434 TGGAGTGATCTAATGGCCATCTT 59.282 43.478 21.08 7.91 0.00 2.40
4803 4848 3.321039 TGGAGTGATCTAATGGCCATCT 58.679 45.455 21.08 9.86 0.00 2.90
4804 4849 3.777106 TGGAGTGATCTAATGGCCATC 57.223 47.619 21.08 7.63 0.00 3.51
4805 4850 3.813240 GCATGGAGTGATCTAATGGCCAT 60.813 47.826 14.09 14.09 35.18 4.40
4806 4851 2.487805 GCATGGAGTGATCTAATGGCCA 60.488 50.000 8.56 8.56 0.00 5.36
4807 4852 2.157738 GCATGGAGTGATCTAATGGCC 58.842 52.381 0.00 0.00 0.00 5.36
4808 4853 2.812591 CTGCATGGAGTGATCTAATGGC 59.187 50.000 5.98 0.00 0.00 4.40
4809 4854 3.181447 ACCTGCATGGAGTGATCTAATGG 60.181 47.826 13.65 0.00 39.71 3.16
4810 4855 4.082665 ACCTGCATGGAGTGATCTAATG 57.917 45.455 13.65 0.00 39.71 1.90
4811 4856 4.904251 ACTACCTGCATGGAGTGATCTAAT 59.096 41.667 13.65 0.00 39.71 1.73
4812 4857 4.100035 CACTACCTGCATGGAGTGATCTAA 59.900 45.833 25.48 0.00 41.88 2.10
4813 4858 3.638627 CACTACCTGCATGGAGTGATCTA 59.361 47.826 25.48 0.00 41.88 1.98
4814 4859 2.433604 CACTACCTGCATGGAGTGATCT 59.566 50.000 25.48 0.00 41.88 2.75
4815 4860 2.169352 ACACTACCTGCATGGAGTGATC 59.831 50.000 33.23 0.00 41.88 2.92
4816 4861 2.191400 ACACTACCTGCATGGAGTGAT 58.809 47.619 33.23 18.46 41.88 3.06
4817 4862 1.644509 ACACTACCTGCATGGAGTGA 58.355 50.000 33.23 0.00 41.88 3.41
4818 4863 2.079158 CAACACTACCTGCATGGAGTG 58.921 52.381 27.20 27.20 43.37 3.51
4819 4864 1.699634 ACAACACTACCTGCATGGAGT 59.300 47.619 13.65 0.22 39.71 3.85
4820 4865 2.479566 ACAACACTACCTGCATGGAG 57.520 50.000 7.35 7.35 39.71 3.86
4821 4866 3.071747 TGTTACAACACTACCTGCATGGA 59.928 43.478 8.91 0.00 35.15 3.41
4822 4867 3.407698 TGTTACAACACTACCTGCATGG 58.592 45.455 0.00 0.00 36.46 3.66
4823 4868 4.314961 TCTGTTACAACACTACCTGCATG 58.685 43.478 0.00 0.00 34.70 4.06
4824 4869 4.617253 TCTGTTACAACACTACCTGCAT 57.383 40.909 0.00 0.00 34.70 3.96
4825 4870 4.124238 GTTCTGTTACAACACTACCTGCA 58.876 43.478 0.00 0.00 34.70 4.41
4826 4871 4.124238 TGTTCTGTTACAACACTACCTGC 58.876 43.478 0.00 0.00 34.70 4.85
4827 4872 5.179368 CCATGTTCTGTTACAACACTACCTG 59.821 44.000 0.00 0.00 36.59 4.00
4828 4873 5.305585 CCATGTTCTGTTACAACACTACCT 58.694 41.667 0.00 0.00 36.59 3.08
4829 4874 4.454504 CCCATGTTCTGTTACAACACTACC 59.545 45.833 0.00 0.00 36.59 3.18
4830 4875 5.061179 ACCCATGTTCTGTTACAACACTAC 58.939 41.667 0.00 0.00 36.59 2.73
4831 4876 5.163290 TGACCCATGTTCTGTTACAACACTA 60.163 40.000 0.00 0.00 36.59 2.74
4832 4877 4.134563 GACCCATGTTCTGTTACAACACT 58.865 43.478 0.00 0.00 36.59 3.55
4833 4878 3.880490 TGACCCATGTTCTGTTACAACAC 59.120 43.478 0.00 0.00 36.59 3.32
4834 4879 4.133820 CTGACCCATGTTCTGTTACAACA 58.866 43.478 0.00 0.00 38.12 3.33
4835 4880 4.134563 ACTGACCCATGTTCTGTTACAAC 58.865 43.478 0.00 0.00 0.00 3.32
4836 4881 4.431416 ACTGACCCATGTTCTGTTACAA 57.569 40.909 0.00 0.00 0.00 2.41
4837 4882 4.562757 GCTACTGACCCATGTTCTGTTACA 60.563 45.833 8.71 0.00 0.00 2.41
4838 4883 3.933332 GCTACTGACCCATGTTCTGTTAC 59.067 47.826 8.71 1.04 0.00 2.50
4839 4884 3.580895 TGCTACTGACCCATGTTCTGTTA 59.419 43.478 8.71 0.00 0.00 2.41
4840 4885 2.371841 TGCTACTGACCCATGTTCTGTT 59.628 45.455 8.71 0.00 0.00 3.16
4841 4886 1.977854 TGCTACTGACCCATGTTCTGT 59.022 47.619 8.52 8.52 0.00 3.41
4842 4887 2.768253 TGCTACTGACCCATGTTCTG 57.232 50.000 0.00 0.00 0.00 3.02
4843 4888 4.471386 AGTAATGCTACTGACCCATGTTCT 59.529 41.667 0.00 0.00 36.98 3.01
4844 4889 4.770795 AGTAATGCTACTGACCCATGTTC 58.229 43.478 0.00 0.00 36.98 3.18
4845 4890 4.844349 AGTAATGCTACTGACCCATGTT 57.156 40.909 0.00 0.00 36.98 2.71
4855 4900 4.223032 AGGCACAACTACAGTAATGCTACT 59.777 41.667 14.13 4.99 39.04 2.57
4856 4901 4.504858 AGGCACAACTACAGTAATGCTAC 58.495 43.478 14.13 3.32 38.41 3.58
4857 4902 4.819105 AGGCACAACTACAGTAATGCTA 57.181 40.909 14.13 0.00 38.41 3.49
4858 4903 3.703001 AGGCACAACTACAGTAATGCT 57.297 42.857 14.13 2.71 38.41 3.79
4859 4904 4.201685 CGTAAGGCACAACTACAGTAATGC 60.202 45.833 8.55 8.55 37.93 3.56
4860 4905 4.927425 ACGTAAGGCACAACTACAGTAATG 59.073 41.667 0.00 0.00 46.39 1.90
4861 4906 5.143376 ACGTAAGGCACAACTACAGTAAT 57.857 39.130 0.00 0.00 46.39 1.89
4862 4907 4.589216 ACGTAAGGCACAACTACAGTAA 57.411 40.909 0.00 0.00 46.39 2.24
4876 4921 1.931172 CAATTACCCTGCGACGTAAGG 59.069 52.381 10.72 10.72 46.39 2.69
4878 4923 2.008045 GCCAATTACCCTGCGACGTAA 61.008 52.381 0.00 0.00 0.00 3.18
4879 4924 0.460635 GCCAATTACCCTGCGACGTA 60.461 55.000 0.00 0.00 0.00 3.57
4880 4925 1.743995 GCCAATTACCCTGCGACGT 60.744 57.895 0.00 0.00 0.00 4.34
4881 4926 1.429148 GAGCCAATTACCCTGCGACG 61.429 60.000 0.00 0.00 0.00 5.12
4882 4927 1.429148 CGAGCCAATTACCCTGCGAC 61.429 60.000 0.00 0.00 0.00 5.19
4883 4928 1.153449 CGAGCCAATTACCCTGCGA 60.153 57.895 0.00 0.00 0.00 5.10
4884 4929 0.179094 TACGAGCCAATTACCCTGCG 60.179 55.000 0.00 0.00 0.00 5.18
4885 4930 1.134491 ACTACGAGCCAATTACCCTGC 60.134 52.381 0.00 0.00 0.00 4.85
4886 4931 2.981859 ACTACGAGCCAATTACCCTG 57.018 50.000 0.00 0.00 0.00 4.45
4887 4932 3.383825 CAGTACTACGAGCCAATTACCCT 59.616 47.826 0.00 0.00 0.00 4.34
4888 4933 3.714391 CAGTACTACGAGCCAATTACCC 58.286 50.000 0.00 0.00 0.00 3.69
4889 4934 3.121544 GCAGTACTACGAGCCAATTACC 58.878 50.000 0.00 0.00 0.00 2.85
4890 4935 4.043037 AGCAGTACTACGAGCCAATTAC 57.957 45.455 0.00 0.00 0.00 1.89
4891 4936 5.179045 GTAGCAGTACTACGAGCCAATTA 57.821 43.478 0.00 0.00 41.88 1.40
4892 4937 4.043037 GTAGCAGTACTACGAGCCAATT 57.957 45.455 0.00 0.00 41.88 2.32
4893 4938 3.712091 GTAGCAGTACTACGAGCCAAT 57.288 47.619 0.00 0.00 41.88 3.16
4902 4947 6.376299 TCGATTCTTTGAAGGTAGCAGTACTA 59.624 38.462 0.00 0.00 0.00 1.82
4903 4948 5.185249 TCGATTCTTTGAAGGTAGCAGTACT 59.815 40.000 0.00 0.00 0.00 2.73
4904 4949 5.408356 TCGATTCTTTGAAGGTAGCAGTAC 58.592 41.667 0.00 0.00 0.00 2.73
4905 4950 5.654603 TCGATTCTTTGAAGGTAGCAGTA 57.345 39.130 0.00 0.00 0.00 2.74
4906 4951 4.537135 TCGATTCTTTGAAGGTAGCAGT 57.463 40.909 0.00 0.00 0.00 4.40
4907 4952 5.171476 TCTTCGATTCTTTGAAGGTAGCAG 58.829 41.667 0.00 0.00 41.82 4.24
4908 4953 5.047306 TCTCTTCGATTCTTTGAAGGTAGCA 60.047 40.000 0.00 0.00 41.82 3.49
4909 4954 5.411781 TCTCTTCGATTCTTTGAAGGTAGC 58.588 41.667 2.50 0.00 41.82 3.58
4910 4955 6.039616 CCTCTCTTCGATTCTTTGAAGGTAG 58.960 44.000 2.50 1.34 41.82 3.18
4911 4956 5.480772 ACCTCTCTTCGATTCTTTGAAGGTA 59.519 40.000 2.50 0.00 41.82 3.08
4912 4957 4.284746 ACCTCTCTTCGATTCTTTGAAGGT 59.715 41.667 2.50 0.00 41.82 3.50
4913 4958 4.826556 ACCTCTCTTCGATTCTTTGAAGG 58.173 43.478 2.50 0.00 41.82 3.46
4914 4959 7.891183 TTTACCTCTCTTCGATTCTTTGAAG 57.109 36.000 0.00 0.00 42.56 3.02
4916 4961 9.751542 GATATTTACCTCTCTTCGATTCTTTGA 57.248 33.333 0.00 0.00 0.00 2.69
4917 4962 9.534565 TGATATTTACCTCTCTTCGATTCTTTG 57.465 33.333 0.00 0.00 0.00 2.77
4918 4963 9.535878 GTGATATTTACCTCTCTTCGATTCTTT 57.464 33.333 0.00 0.00 0.00 2.52
4919 4964 8.919145 AGTGATATTTACCTCTCTTCGATTCTT 58.081 33.333 0.00 0.00 0.00 2.52
4920 4965 8.472007 AGTGATATTTACCTCTCTTCGATTCT 57.528 34.615 0.00 0.00 0.00 2.40
4976 5220 2.679837 AGTGCTGCAACAGATAAATCCG 59.320 45.455 2.77 0.00 32.44 4.18
5027 5271 4.207891 AGAACCTCAGCACATTTCGTAT 57.792 40.909 0.00 0.00 0.00 3.06
5067 5311 3.561313 GCCAATTGTCCTTTCCTCACCTA 60.561 47.826 4.43 0.00 0.00 3.08
5068 5312 2.819348 GCCAATTGTCCTTTCCTCACCT 60.819 50.000 4.43 0.00 0.00 4.00
5084 5328 0.819259 ACACAGTCAAGCACGCCAAT 60.819 50.000 0.00 0.00 0.00 3.16
5136 5380 3.694072 GCCACATCAAACAGTATGCCTAA 59.306 43.478 0.00 0.00 42.53 2.69
5188 5463 6.095300 TGTGCAAGTATGATACATTTTCCCAG 59.905 38.462 5.28 0.00 0.00 4.45
5196 5471 3.557185 CAGCGTGTGCAAGTATGATACAT 59.443 43.478 5.28 0.00 46.23 2.29
5219 5494 2.813179 GATCGTGGGCGTGACATGC 61.813 63.158 11.38 11.38 39.49 4.06
5222 5497 2.261361 CTGATCGTGGGCGTGACA 59.739 61.111 0.00 0.00 39.49 3.58
5225 5500 2.509336 GGACTGATCGTGGGCGTG 60.509 66.667 0.00 0.00 39.49 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.