Multiple sequence alignment - TraesCS1B01G233100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G233100 chr1B 100.000 5117 0 0 1 5117 418809547 418804431 0.000000e+00 9450.0
1 TraesCS1B01G233100 chr1B 96.341 82 1 2 4755 4835 418804748 418804668 3.210000e-27 134.0
2 TraesCS1B01G233100 chr1B 96.341 82 1 2 4800 4880 418804793 418804713 3.210000e-27 134.0
3 TraesCS1B01G233100 chr1B 90.741 54 5 0 2191 2244 665275920 665275973 7.110000e-09 73.1
4 TraesCS1B01G233100 chr1B 100.000 30 0 0 4800 4829 250417365 250417394 7.160000e-04 56.5
5 TraesCS1B01G233100 chr1D 92.084 4169 238 42 173 4301 309077685 309073569 0.000000e+00 5786.0
6 TraesCS1B01G233100 chr1D 87.781 311 16 4 4477 4773 309073570 309073268 1.360000e-90 344.0
7 TraesCS1B01G233100 chr1D 85.496 262 25 4 4856 5117 309073269 309073021 1.410000e-65 261.0
8 TraesCS1B01G233100 chr1D 86.111 144 20 0 4904 5047 156126616 156126759 6.860000e-34 156.0
9 TraesCS1B01G233100 chr1D 81.657 169 25 6 4297 4463 383152235 383152399 8.940000e-28 135.0
10 TraesCS1B01G233100 chr1D 98.462 65 1 0 4297 4361 354519020 354518956 1.160000e-21 115.0
11 TraesCS1B01G233100 chr1D 88.776 98 6 2 4689 4784 451265061 451265155 1.160000e-21 115.0
12 TraesCS1B01G233100 chr1D 86.458 96 13 0 4904 4999 80020571 80020476 7.010000e-19 106.0
13 TraesCS1B01G233100 chr1D 94.828 58 3 0 1 58 309077723 309077666 1.960000e-14 91.6
14 TraesCS1B01G233100 chr1D 77.326 172 22 5 4845 4999 451265126 451265297 9.130000e-13 86.1
15 TraesCS1B01G233100 chr1D 100.000 30 0 0 4800 4829 156126541 156126570 7.160000e-04 56.5
16 TraesCS1B01G233100 chr1D 100.000 30 0 0 4800 4829 451265126 451265155 7.160000e-04 56.5
17 TraesCS1B01G233100 chr1A 95.467 2978 104 18 173 3135 388837959 388834998 0.000000e+00 4723.0
18 TraesCS1B01G233100 chr1A 96.347 1177 30 4 3137 4301 388834913 388833738 0.000000e+00 1923.0
19 TraesCS1B01G233100 chr1A 91.456 316 8 4 4477 4784 388833739 388833435 2.850000e-112 416.0
20 TraesCS1B01G233100 chr1A 92.674 273 20 0 4845 5117 388833433 388833161 1.340000e-105 394.0
21 TraesCS1B01G233100 chr1A 84.722 144 22 0 4904 5047 171462575 171462432 1.480000e-30 145.0
22 TraesCS1B01G233100 chr1A 86.408 103 10 3 4689 4787 497195153 497195255 5.420000e-20 110.0
23 TraesCS1B01G233100 chr1A 86.869 99 9 4 4693 4787 463520770 463520868 1.950000e-19 108.0
24 TraesCS1B01G233100 chr1A 85.437 103 11 4 4689 4787 534763017 534762915 2.520000e-18 104.0
25 TraesCS1B01G233100 chr1A 85.870 92 10 2 4689 4777 521899927 521899836 1.520000e-15 95.3
26 TraesCS1B01G233100 chr1A 88.525 61 4 3 4693 4750 131960510 131960570 2.560000e-08 71.3
27 TraesCS1B01G233100 chr1A 94.595 37 2 0 4845 4881 41751699 41751663 1.990000e-04 58.4
28 TraesCS1B01G233100 chr1A 94.595 37 0 2 4800 4835 171462650 171462615 7.160000e-04 56.5
29 TraesCS1B01G233100 chrUn 98.425 127 1 1 52 178 390605458 390605583 6.670000e-54 222.0
30 TraesCS1B01G233100 chr6B 97.656 128 1 2 52 178 22459535 22459409 8.630000e-53 219.0
31 TraesCS1B01G233100 chr6B 93.798 129 6 2 50 178 22587691 22587817 5.230000e-45 193.0
32 TraesCS1B01G233100 chr6B 85.484 186 18 9 4300 4480 149466968 149467149 8.750000e-43 185.0
33 TraesCS1B01G233100 chr7B 97.638 127 2 1 52 178 613188862 613188987 3.100000e-52 217.0
34 TraesCS1B01G233100 chr4B 96.183 131 3 2 49 178 95444567 95444696 4.010000e-51 213.0
35 TraesCS1B01G233100 chr7D 96.154 130 2 3 51 178 608479283 608479155 5.190000e-50 209.0
36 TraesCS1B01G233100 chr7D 84.615 104 12 4 4689 4788 9626942 9626839 3.260000e-17 100.0
37 TraesCS1B01G233100 chr7D 84.615 104 10 4 4689 4787 9445729 9445627 1.170000e-16 99.0
38 TraesCS1B01G233100 chr4A 87.845 181 19 3 4300 4478 29074871 29074692 5.190000e-50 209.0
39 TraesCS1B01G233100 chr4A 77.626 219 30 4 4845 5044 455277009 455277227 1.160000e-21 115.0
40 TraesCS1B01G233100 chr5B 96.000 125 4 1 54 178 387369377 387369254 8.690000e-48 202.0
41 TraesCS1B01G233100 chr5B 100.000 62 0 0 4300 4361 13176058 13175997 1.160000e-21 115.0
42 TraesCS1B01G233100 chr5B 95.714 70 3 0 4300 4369 136048536 136048467 4.190000e-21 113.0
43 TraesCS1B01G233100 chr5B 98.413 63 1 0 4298 4360 24233378 24233316 1.510000e-20 111.0
44 TraesCS1B01G233100 chr5B 90.909 44 3 1 5051 5094 128359353 128359311 1.990000e-04 58.4
45 TraesCS1B01G233100 chr2D 95.238 126 6 0 51 176 417565365 417565240 3.120000e-47 200.0
46 TraesCS1B01G233100 chr2D 95.918 98 3 1 4352 4449 567672207 567672303 1.910000e-34 158.0
47 TraesCS1B01G233100 chr2D 87.379 103 9 4 4689 4787 601494389 601494287 1.160000e-21 115.0
48 TraesCS1B01G233100 chr2D 80.556 144 28 0 4904 5047 172394327 172394184 1.510000e-20 111.0
49 TraesCS1B01G233100 chr2D 85.047 107 10 6 4689 4790 612363878 612363773 2.520000e-18 104.0
50 TraesCS1B01G233100 chr3B 95.200 125 4 2 54 178 566636598 566636720 4.040000e-46 196.0
51 TraesCS1B01G233100 chr3B 80.159 252 50 0 1850 2101 501420263 501420514 6.760000e-44 189.0
52 TraesCS1B01G233100 chr3B 90.909 44 3 1 5051 5094 572250079 572250037 1.990000e-04 58.4
53 TraesCS1B01G233100 chr3B 97.059 34 0 1 4800 4832 577521574 577521607 7.160000e-04 56.5
54 TraesCS1B01G233100 chr2A 94.309 123 6 1 4357 4478 177665286 177665164 2.430000e-43 187.0
55 TraesCS1B01G233100 chr2A 90.625 96 5 3 4693 4784 177667346 177667441 1.930000e-24 124.0
56 TraesCS1B01G233100 chr2A 91.667 84 5 2 4300 4382 700986016 700986098 1.160000e-21 115.0
57 TraesCS1B01G233100 chr2A 87.000 100 10 2 4689 4785 73375650 73375749 5.420000e-20 110.0
58 TraesCS1B01G233100 chr4D 98.913 92 1 0 4357 4448 308546393 308546302 1.140000e-36 165.0
59 TraesCS1B01G233100 chr3D 98.901 91 1 0 4356 4446 331017961 331018051 4.100000e-36 163.0
60 TraesCS1B01G233100 chr3A 96.907 97 3 0 4350 4446 549639099 549639195 4.100000e-36 163.0
61 TraesCS1B01G233100 chr3A 94.118 102 6 0 4341 4442 197111237 197111136 6.860000e-34 156.0
62 TraesCS1B01G233100 chr3A 80.269 223 24 2 4845 5047 235450938 235451160 3.190000e-32 150.0
63 TraesCS1B01G233100 chr3A 83.333 144 24 0 4904 5047 83218713 83218570 3.210000e-27 134.0
64 TraesCS1B01G233100 chr3A 79.126 206 24 2 4845 5031 672676566 672676361 1.930000e-24 124.0
65 TraesCS1B01G233100 chr3A 89.773 88 6 3 4687 4771 745813105 745813192 5.420000e-20 110.0
66 TraesCS1B01G233100 chr6A 83.217 143 24 0 4904 5046 448649051 448649193 1.160000e-26 132.0
67 TraesCS1B01G233100 chr6A 87.379 103 9 4 4689 4787 421333543 421333645 1.160000e-21 115.0
68 TraesCS1B01G233100 chr6A 80.986 142 27 0 4904 5045 109496713 109496854 4.190000e-21 113.0
69 TraesCS1B01G233100 chr6A 87.000 100 9 4 4689 4785 554824762 554824664 5.420000e-20 110.0
70 TraesCS1B01G233100 chr5D 83.333 144 23 1 4904 5046 287426795 287426938 1.160000e-26 132.0
71 TraesCS1B01G233100 chr5D 100.000 30 0 0 4800 4829 287426713 287426742 7.160000e-04 56.5
72 TraesCS1B01G233100 chr5A 82.353 136 24 0 4904 5039 581626640 581626505 9.000000e-23 119.0
73 TraesCS1B01G233100 chr5A 96.552 58 2 0 4845 4902 611029955 611029898 4.220000e-16 97.1
74 TraesCS1B01G233100 chr6D 87.379 103 9 4 4689 4787 272386551 272386653 1.160000e-21 115.0
75 TraesCS1B01G233100 chr6D 85.333 75 4 5 4906 4980 6270369 6270302 2.560000e-08 71.3
76 TraesCS1B01G233100 chr2B 95.714 70 3 0 4292 4361 474857871 474857940 4.190000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G233100 chr1B 418804431 418809547 5116 True 9450.00 9450 100.00000 1 5117 1 chr1B.!!$R1 5116
1 TraesCS1B01G233100 chr1D 309073021 309077723 4702 True 1620.65 5786 90.04725 1 5117 4 chr1D.!!$R3 5116
2 TraesCS1B01G233100 chr1A 388833161 388837959 4798 True 1864.00 4723 93.98600 173 5117 4 chr1A.!!$R5 4944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.109919 GGGCGAAAACCGTCACAATC 60.110 55.0 0.0 0.0 46.37 2.67 F
155 156 0.109919 GGCGAAAACCGTCACAATCC 60.110 55.0 0.0 0.0 43.50 3.01 F
160 161 0.250124 AAACCGTCACAATCCGCTGA 60.250 50.0 0.0 0.0 0.00 4.26 F
1582 1596 0.592637 CGCATCAAAGGTGTGCAAGA 59.407 50.0 0.0 0.0 38.75 3.02 F
3720 3841 0.548682 ACTCATGCAGGTCCCTCCTT 60.549 55.0 0.0 0.0 45.67 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 1936 1.610624 CCAACCGCCAAAAGAGAGCTA 60.611 52.381 0.00 0.00 0.00 3.32 R
2294 2311 6.323996 ACACAAGCATGCCTCTACTTATACTA 59.676 38.462 15.66 0.00 0.00 1.82 R
2358 2375 2.074547 ACAAGCTGCATTGCATCAAC 57.925 45.000 12.53 2.58 38.13 3.18 R
3767 3902 0.033601 ACTTGGACACAGGGTTGCAA 60.034 50.000 0.00 0.00 0.00 4.08 R
5028 5212 1.003233 CGAGGCCTCCTTTGGTTTAGT 59.997 52.381 27.20 0.00 31.76 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.942532 AAAGCAATCACACTAGAAAAGACA 57.057 33.333 0.00 0.00 0.00 3.41
39 40 6.551385 AAGCAATCACACTAGAAAAGACAG 57.449 37.500 0.00 0.00 0.00 3.51
40 41 4.999950 AGCAATCACACTAGAAAAGACAGG 59.000 41.667 0.00 0.00 0.00 4.00
41 42 4.997395 GCAATCACACTAGAAAAGACAGGA 59.003 41.667 0.00 0.00 0.00 3.86
42 43 5.470098 GCAATCACACTAGAAAAGACAGGAA 59.530 40.000 0.00 0.00 0.00 3.36
43 44 6.150140 GCAATCACACTAGAAAAGACAGGAAT 59.850 38.462 0.00 0.00 0.00 3.01
44 45 7.625185 GCAATCACACTAGAAAAGACAGGAATC 60.625 40.741 0.00 0.00 0.00 2.52
45 46 5.794894 TCACACTAGAAAAGACAGGAATCC 58.205 41.667 0.00 0.00 0.00 3.01
46 47 5.306937 TCACACTAGAAAAGACAGGAATCCA 59.693 40.000 0.61 0.00 0.00 3.41
47 48 6.013379 TCACACTAGAAAAGACAGGAATCCAT 60.013 38.462 0.61 0.00 0.00 3.41
48 49 6.314896 CACACTAGAAAAGACAGGAATCCATC 59.685 42.308 0.61 0.00 0.00 3.51
49 50 6.013379 ACACTAGAAAAGACAGGAATCCATCA 60.013 38.462 0.61 0.00 0.00 3.07
50 51 6.881065 CACTAGAAAAGACAGGAATCCATCAA 59.119 38.462 0.61 0.00 0.00 2.57
51 52 7.555554 CACTAGAAAAGACAGGAATCCATCAAT 59.444 37.037 0.61 0.00 0.00 2.57
52 53 8.112183 ACTAGAAAAGACAGGAATCCATCAATT 58.888 33.333 0.61 0.00 0.00 2.32
53 54 7.787623 AGAAAAGACAGGAATCCATCAATTT 57.212 32.000 0.61 4.84 0.00 1.82
54 55 8.198807 AGAAAAGACAGGAATCCATCAATTTT 57.801 30.769 0.61 3.12 0.00 1.82
55 56 8.654094 AGAAAAGACAGGAATCCATCAATTTTT 58.346 29.630 0.61 2.47 0.00 1.94
77 78 4.457834 TTTTTGAAACGGAGGCAAAAGA 57.542 36.364 0.00 0.00 41.02 2.52
78 79 4.664150 TTTTGAAACGGAGGCAAAAGAT 57.336 36.364 0.00 0.00 36.80 2.40
79 80 4.664150 TTTGAAACGGAGGCAAAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
80 81 4.664150 TTGAAACGGAGGCAAAAGATTT 57.336 36.364 0.00 0.00 0.00 2.17
81 82 3.976169 TGAAACGGAGGCAAAAGATTTG 58.024 40.909 0.00 0.00 0.00 2.32
82 83 2.438868 AACGGAGGCAAAAGATTTGC 57.561 45.000 17.18 17.18 44.22 3.68
90 91 3.598019 GCAAAAGATTTGCCTCATCCA 57.402 42.857 15.12 0.00 39.38 3.41
91 92 4.133013 GCAAAAGATTTGCCTCATCCAT 57.867 40.909 15.12 0.00 39.38 3.41
92 93 4.510571 GCAAAAGATTTGCCTCATCCATT 58.489 39.130 15.12 0.00 39.38 3.16
93 94 5.663456 GCAAAAGATTTGCCTCATCCATTA 58.337 37.500 15.12 0.00 39.38 1.90
94 95 6.108015 GCAAAAGATTTGCCTCATCCATTAA 58.892 36.000 15.12 0.00 39.38 1.40
95 96 6.764560 GCAAAAGATTTGCCTCATCCATTAAT 59.235 34.615 15.12 0.00 39.38 1.40
96 97 7.927629 GCAAAAGATTTGCCTCATCCATTAATA 59.072 33.333 15.12 0.00 39.38 0.98
97 98 9.820725 CAAAAGATTTGCCTCATCCATTAATAA 57.179 29.630 0.00 0.00 0.00 1.40
100 101 7.664758 AGATTTGCCTCATCCATTAATAAAGC 58.335 34.615 0.00 0.00 0.00 3.51
101 102 6.788598 TTTGCCTCATCCATTAATAAAGCA 57.211 33.333 0.00 0.00 0.00 3.91
102 103 6.395426 TTGCCTCATCCATTAATAAAGCAG 57.605 37.500 0.00 0.00 0.00 4.24
103 104 5.693961 TGCCTCATCCATTAATAAAGCAGA 58.306 37.500 0.00 0.00 0.00 4.26
104 105 6.128486 TGCCTCATCCATTAATAAAGCAGAA 58.872 36.000 0.00 0.00 0.00 3.02
105 106 6.263842 TGCCTCATCCATTAATAAAGCAGAAG 59.736 38.462 0.00 0.00 0.00 2.85
106 107 6.488006 GCCTCATCCATTAATAAAGCAGAAGA 59.512 38.462 0.00 0.00 0.00 2.87
107 108 7.308469 GCCTCATCCATTAATAAAGCAGAAGAG 60.308 40.741 0.00 0.00 0.00 2.85
108 109 7.935755 CCTCATCCATTAATAAAGCAGAAGAGA 59.064 37.037 0.00 0.00 0.00 3.10
109 110 9.334947 CTCATCCATTAATAAAGCAGAAGAGAA 57.665 33.333 0.00 0.00 0.00 2.87
110 111 9.857656 TCATCCATTAATAAAGCAGAAGAGAAT 57.142 29.630 0.00 0.00 0.00 2.40
113 114 8.408601 TCCATTAATAAAGCAGAAGAGAATTGC 58.591 33.333 0.00 0.00 38.09 3.56
114 115 7.650903 CCATTAATAAAGCAGAAGAGAATTGCC 59.349 37.037 0.00 0.00 38.58 4.52
115 116 5.588958 AATAAAGCAGAAGAGAATTGCCC 57.411 39.130 0.00 0.00 38.58 5.36
116 117 2.592102 AAGCAGAAGAGAATTGCCCA 57.408 45.000 0.00 0.00 38.58 5.36
117 118 2.125773 AGCAGAAGAGAATTGCCCAG 57.874 50.000 0.00 0.00 38.58 4.45
118 119 1.353694 AGCAGAAGAGAATTGCCCAGT 59.646 47.619 0.00 0.00 38.58 4.00
119 120 2.165998 GCAGAAGAGAATTGCCCAGTT 58.834 47.619 0.00 0.00 31.79 3.16
120 121 3.009473 AGCAGAAGAGAATTGCCCAGTTA 59.991 43.478 0.00 0.00 38.58 2.24
121 122 3.758554 GCAGAAGAGAATTGCCCAGTTAA 59.241 43.478 0.00 0.00 31.79 2.01
122 123 4.400567 GCAGAAGAGAATTGCCCAGTTAAT 59.599 41.667 0.00 0.00 31.79 1.40
123 124 5.105595 GCAGAAGAGAATTGCCCAGTTAATT 60.106 40.000 0.00 0.00 31.79 1.40
124 125 6.095440 GCAGAAGAGAATTGCCCAGTTAATTA 59.905 38.462 0.00 0.00 31.79 1.40
125 126 7.362920 GCAGAAGAGAATTGCCCAGTTAATTAA 60.363 37.037 0.00 0.00 31.79 1.40
126 127 7.970614 CAGAAGAGAATTGCCCAGTTAATTAAC 59.029 37.037 18.77 18.77 36.46 2.01
127 128 6.436843 AGAGAATTGCCCAGTTAATTAACG 57.563 37.500 19.92 15.03 40.96 3.18
128 129 5.357032 AGAGAATTGCCCAGTTAATTAACGG 59.643 40.000 19.92 21.15 40.96 4.44
129 130 5.258051 AGAATTGCCCAGTTAATTAACGGA 58.742 37.500 26.78 13.37 40.96 4.69
130 131 5.712917 AGAATTGCCCAGTTAATTAACGGAA 59.287 36.000 26.78 18.98 40.96 4.30
131 132 5.986501 ATTGCCCAGTTAATTAACGGAAA 57.013 34.783 26.78 21.17 40.96 3.13
132 133 5.786264 TTGCCCAGTTAATTAACGGAAAA 57.214 34.783 26.78 20.29 40.96 2.29
133 134 5.123805 TGCCCAGTTAATTAACGGAAAAC 57.876 39.130 26.78 18.05 40.96 2.43
134 135 4.022155 TGCCCAGTTAATTAACGGAAAACC 60.022 41.667 26.78 14.02 40.96 3.27
135 136 4.725359 CCCAGTTAATTAACGGAAAACCG 58.275 43.478 26.78 13.36 40.96 4.44
136 137 4.379708 CCCAGTTAATTAACGGAAAACCGG 60.380 45.833 26.78 16.91 40.96 5.28
137 138 4.379708 CCAGTTAATTAACGGAAAACCGGG 60.380 45.833 24.48 11.88 40.96 5.73
138 139 3.191162 AGTTAATTAACGGAAAACCGGGC 59.809 43.478 19.92 0.00 40.96 6.13
139 140 0.522626 AATTAACGGAAAACCGGGCG 59.477 50.000 6.32 0.00 37.53 6.13
140 141 0.321475 ATTAACGGAAAACCGGGCGA 60.321 50.000 6.32 0.00 37.53 5.54
141 142 0.533755 TTAACGGAAAACCGGGCGAA 60.534 50.000 6.32 0.00 37.53 4.70
142 143 0.533755 TAACGGAAAACCGGGCGAAA 60.534 50.000 6.32 0.00 37.53 3.46
143 144 1.382692 AACGGAAAACCGGGCGAAAA 61.383 50.000 6.32 0.00 37.53 2.29
144 145 1.370778 CGGAAAACCGGGCGAAAAC 60.371 57.895 6.32 0.00 0.00 2.43
145 146 1.007038 GGAAAACCGGGCGAAAACC 60.007 57.895 6.32 0.00 0.00 3.27
151 152 2.968156 CGGGCGAAAACCGTCACA 60.968 61.111 0.00 0.00 46.37 3.58
152 153 2.535788 CGGGCGAAAACCGTCACAA 61.536 57.895 0.00 0.00 46.37 3.33
153 154 1.847890 CGGGCGAAAACCGTCACAAT 61.848 55.000 0.00 0.00 46.37 2.71
154 155 0.109919 GGGCGAAAACCGTCACAATC 60.110 55.000 0.00 0.00 46.37 2.67
155 156 0.109919 GGCGAAAACCGTCACAATCC 60.110 55.000 0.00 0.00 43.50 3.01
156 157 0.452122 GCGAAAACCGTCACAATCCG 60.452 55.000 0.00 0.00 41.15 4.18
157 158 0.452122 CGAAAACCGTCACAATCCGC 60.452 55.000 0.00 0.00 0.00 5.54
158 159 0.872388 GAAAACCGTCACAATCCGCT 59.128 50.000 0.00 0.00 0.00 5.52
159 160 0.591170 AAAACCGTCACAATCCGCTG 59.409 50.000 0.00 0.00 0.00 5.18
160 161 0.250124 AAACCGTCACAATCCGCTGA 60.250 50.000 0.00 0.00 0.00 4.26
161 162 0.670546 AACCGTCACAATCCGCTGAG 60.671 55.000 0.00 0.00 0.00 3.35
162 163 2.456119 CCGTCACAATCCGCTGAGC 61.456 63.158 0.00 0.00 0.00 4.26
191 192 7.806409 CACATAGGAATCCATCAATGTGTTA 57.194 36.000 19.74 0.00 42.83 2.41
258 259 4.870123 ATGAACTAAACAAGCATGCCAA 57.130 36.364 15.66 0.00 0.00 4.52
280 281 6.127730 CCAAAAACATGTTCTATACCAGGTCC 60.128 42.308 12.39 0.00 0.00 4.46
284 285 4.721776 ACATGTTCTATACCAGGTCCACAT 59.278 41.667 0.00 0.00 0.00 3.21
340 343 4.989168 GGTATGAACTATTTCGCCTCGATT 59.011 41.667 0.00 0.00 35.23 3.34
469 473 4.893601 TGGAACACCACGCGCGAA 62.894 61.111 39.36 6.80 0.00 4.70
508 512 3.998341 GGCATAACTTTGACAGGACGTAA 59.002 43.478 0.00 0.00 0.00 3.18
547 551 2.158449 CAGAGGCTACTGAAAACAAGCG 59.842 50.000 7.85 0.00 39.94 4.68
548 552 2.143925 GAGGCTACTGAAAACAAGCGT 58.856 47.619 0.00 0.00 35.79 5.07
828 832 3.863424 CGAGTACAATACAATCGGCTGTT 59.137 43.478 0.00 0.00 0.00 3.16
856 860 3.501062 GCGGCCCAATATAGTCTTTAACC 59.499 47.826 0.00 0.00 0.00 2.85
891 896 2.046892 GGCTGACGTGCTGGTCAT 60.047 61.111 10.18 0.00 45.23 3.06
908 913 1.228552 ATTGAAGCGTGGGCCAACT 60.229 52.632 8.40 6.06 41.24 3.16
918 923 1.968540 GGGCCAACTGCTCTGTCAC 60.969 63.158 4.39 0.00 37.53 3.67
1092 1097 3.801997 CCCATCGCCCTGGCTCTT 61.802 66.667 6.60 0.00 39.32 2.85
1240 1245 3.517602 TCGCACACTTACTCGCAATAAT 58.482 40.909 0.00 0.00 0.00 1.28
1259 1264 7.095017 GCAATAATACCCTAGACAATTCTGCTC 60.095 40.741 0.00 0.00 32.75 4.26
1311 1325 2.102420 CTGTGTGACTGTGTCCCTGTTA 59.898 50.000 0.00 0.00 0.00 2.41
1329 1343 6.042781 CCCTGTTAAGCTGTTAGGATATGGTA 59.957 42.308 7.84 0.00 0.00 3.25
1354 1368 3.334272 AAAAGAAAGAACAACGCTCCG 57.666 42.857 0.00 0.00 0.00 4.63
1417 1431 4.503741 TGCACTTTCAAGATTTACTGGC 57.496 40.909 0.00 0.00 0.00 4.85
1582 1596 0.592637 CGCATCAAAGGTGTGCAAGA 59.407 50.000 0.00 0.00 38.75 3.02
1909 1923 3.548770 CCAATATGGCTGTGATGACTGT 58.451 45.455 0.00 0.00 0.00 3.55
1916 1930 1.947678 GCTGTGATGACTGTTCTGGGG 60.948 57.143 0.00 0.00 0.00 4.96
1922 1936 4.080863 GTGATGACTGTTCTGGGGAGTATT 60.081 45.833 0.00 0.00 0.00 1.89
2358 2375 6.917533 AGCACCAAATTCAGATACTCTTTTG 58.082 36.000 0.00 0.00 0.00 2.44
2364 2381 9.350357 CCAAATTCAGATACTCTTTTGTTGATG 57.650 33.333 0.00 0.00 0.00 3.07
2429 2446 2.869801 CTGAACTTGTGGAACTACGCAA 59.130 45.455 0.00 0.00 38.42 4.85
2619 2636 6.820152 TGAATGTGAGAGTGGAATTGACATAG 59.180 38.462 0.00 0.00 0.00 2.23
2727 2744 5.316327 TGAATGCACACACTTTTGTACAA 57.684 34.783 3.59 3.59 33.30 2.41
2730 2747 4.710423 TGCACACACTTTTGTACAATGT 57.290 36.364 9.56 8.30 33.30 2.71
2788 2807 5.535753 AAAGTGATTTTCAAGGTTCTGGG 57.464 39.130 0.00 0.00 0.00 4.45
2854 2874 5.630680 GCCCATGCTTATAATTCAATGAACG 59.369 40.000 0.00 0.00 33.53 3.95
2938 2959 3.264193 TGGAATATCAGCACTCCACACTT 59.736 43.478 0.00 0.00 32.97 3.16
2952 2973 2.290896 CCACACTTCATGGCTTCCCTAA 60.291 50.000 0.00 0.00 0.00 2.69
2969 2990 8.262933 GCTTCCCTAAACTTTGGACTTACTATA 58.737 37.037 0.00 0.00 0.00 1.31
3135 3156 8.506168 AGGTAATATTCACAACATACCAACTG 57.494 34.615 0.00 0.00 36.18 3.16
3199 3303 5.459762 GTCTGTCATTGTTGTGTTCCATTTG 59.540 40.000 0.00 0.00 0.00 2.32
3411 3531 1.888512 TGCTGTTTTCTGATTCCAGCC 59.111 47.619 15.70 4.27 46.06 4.85
3465 3585 1.211457 AGATCATTGGTCTGGAGGCAC 59.789 52.381 0.00 0.00 0.00 5.01
3597 3717 7.836842 TCCTTCCAATTTTATTTAGTTCCAGC 58.163 34.615 0.00 0.00 0.00 4.85
3600 3720 7.169158 TCCAATTTTATTTAGTTCCAGCCTG 57.831 36.000 0.00 0.00 0.00 4.85
3613 3734 1.602311 CAGCCTGGGTCATCTTATGC 58.398 55.000 0.00 0.00 0.00 3.14
3720 3841 0.548682 ACTCATGCAGGTCCCTCCTT 60.549 55.000 0.00 0.00 45.67 3.36
3723 3844 2.003548 ATGCAGGTCCCTCCTTCCC 61.004 63.158 0.00 0.00 45.67 3.97
3767 3902 6.876257 GTCATGAACTTCACCAATCTAGAACT 59.124 38.462 0.00 0.00 0.00 3.01
3806 3941 4.598022 AGTAACTGGACTAGGACTGTACC 58.402 47.826 0.00 0.00 0.00 3.34
3892 4029 4.887748 TCTATGGATTCCTGCTCGATTTC 58.112 43.478 3.95 0.00 0.00 2.17
4095 4232 1.580815 GGCATTCTGAGCAGAGCTAC 58.419 55.000 10.35 0.00 39.88 3.58
4181 4318 3.013921 GGATTATGTGGGAGAAAACGCA 58.986 45.455 0.00 0.00 0.00 5.24
4198 4335 1.403647 CGCACACGGAGGAATAAGTCA 60.404 52.381 0.00 0.00 34.97 3.41
4300 4437 6.621394 AGGCATACTACCCTGAAAGATACTA 58.379 40.000 0.00 0.00 34.07 1.82
4301 4438 6.494146 AGGCATACTACCCTGAAAGATACTAC 59.506 42.308 0.00 0.00 34.07 2.73
4302 4439 6.494146 GGCATACTACCCTGAAAGATACTACT 59.506 42.308 0.00 0.00 34.07 2.57
4303 4440 7.309316 GGCATACTACCCTGAAAGATACTACTC 60.309 44.444 0.00 0.00 34.07 2.59
4304 4441 7.309316 GCATACTACCCTGAAAGATACTACTCC 60.309 44.444 0.00 0.00 34.07 3.85
4305 4442 5.456779 ACTACCCTGAAAGATACTACTCCC 58.543 45.833 0.00 0.00 34.07 4.30
4306 4443 4.628661 ACCCTGAAAGATACTACTCCCT 57.371 45.455 0.00 0.00 34.07 4.20
4307 4444 4.548669 ACCCTGAAAGATACTACTCCCTC 58.451 47.826 0.00 0.00 34.07 4.30
4308 4445 3.898741 CCCTGAAAGATACTACTCCCTCC 59.101 52.174 0.00 0.00 34.07 4.30
4309 4446 3.570550 CCTGAAAGATACTACTCCCTCCG 59.429 52.174 0.00 0.00 34.07 4.63
4310 4447 4.208746 CTGAAAGATACTACTCCCTCCGT 58.791 47.826 0.00 0.00 34.07 4.69
4311 4448 4.205587 TGAAAGATACTACTCCCTCCGTC 58.794 47.826 0.00 0.00 0.00 4.79
4312 4449 2.955342 AGATACTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
4313 4450 1.424684 AGATACTACTCCCTCCGTCCC 59.575 57.143 0.00 0.00 0.00 4.46
4314 4451 1.144503 GATACTACTCCCTCCGTCCCA 59.855 57.143 0.00 0.00 0.00 4.37
4315 4452 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
4316 4453 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4317 4454 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
4318 4455 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4319 4456 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4320 4457 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4321 4458 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4322 4459 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4323 4460 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4324 4461 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4325 4462 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4326 4463 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4327 4464 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
4328 4465 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
4329 4466 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
4330 4467 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
4331 4468 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
4332 4469 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
4333 4470 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
4334 4471 7.589954 CGTCCCAAAATAAGTGTCTTAACTTTG 59.410 37.037 14.00 14.00 40.77 2.77
4335 4472 8.410912 GTCCCAAAATAAGTGTCTTAACTTTGT 58.589 33.333 16.72 0.00 40.77 2.83
4336 4473 9.629878 TCCCAAAATAAGTGTCTTAACTTTGTA 57.370 29.630 16.72 8.94 40.77 2.41
4337 4474 9.673454 CCCAAAATAAGTGTCTTAACTTTGTAC 57.327 33.333 16.72 0.00 40.77 2.90
4344 4481 8.959705 AAGTGTCTTAACTTTGTACTAGCTTT 57.040 30.769 0.00 0.00 37.05 3.51
4346 4483 9.694137 AGTGTCTTAACTTTGTACTAGCTTTAG 57.306 33.333 0.00 0.00 0.00 1.85
4347 4484 9.473640 GTGTCTTAACTTTGTACTAGCTTTAGT 57.526 33.333 0.00 0.00 0.00 2.24
4370 4507 5.881923 ACAAAGTTGTACTCCCTCTGTAA 57.118 39.130 0.00 0.00 40.16 2.41
4371 4508 6.243216 ACAAAGTTGTACTCCCTCTGTAAA 57.757 37.500 0.00 0.00 40.16 2.01
4372 4509 6.053650 ACAAAGTTGTACTCCCTCTGTAAAC 58.946 40.000 0.00 0.00 40.16 2.01
4373 4510 6.126854 ACAAAGTTGTACTCCCTCTGTAAACT 60.127 38.462 0.00 0.00 40.16 2.66
4374 4511 7.070322 ACAAAGTTGTACTCCCTCTGTAAACTA 59.930 37.037 0.00 0.00 40.16 2.24
4375 4512 7.607615 AAGTTGTACTCCCTCTGTAAACTAA 57.392 36.000 0.00 0.00 0.00 2.24
4376 4513 7.793948 AGTTGTACTCCCTCTGTAAACTAAT 57.206 36.000 0.00 0.00 0.00 1.73
4377 4514 8.890410 AGTTGTACTCCCTCTGTAAACTAATA 57.110 34.615 0.00 0.00 0.00 0.98
4378 4515 9.490083 AGTTGTACTCCCTCTGTAAACTAATAT 57.510 33.333 0.00 0.00 0.00 1.28
4384 4521 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4385 4522 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4386 4523 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4387 4524 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4388 4525 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4436 4573 9.490379 AAACGCTCTTATATTAGTTTATGGAGG 57.510 33.333 0.00 0.00 31.14 4.30
4437 4574 7.612677 ACGCTCTTATATTAGTTTATGGAGGG 58.387 38.462 0.00 0.00 35.06 4.30
4438 4575 7.453752 ACGCTCTTATATTAGTTTATGGAGGGA 59.546 37.037 0.00 0.00 34.22 4.20
4439 4576 7.976734 CGCTCTTATATTAGTTTATGGAGGGAG 59.023 40.741 0.00 0.00 33.23 4.30
4440 4577 8.817876 GCTCTTATATTAGTTTATGGAGGGAGT 58.182 37.037 0.00 0.00 0.00 3.85
4447 4584 5.873146 AGTTTATGGAGGGAGTACTAAGC 57.127 43.478 0.00 0.00 0.00 3.09
4448 4585 5.530243 AGTTTATGGAGGGAGTACTAAGCT 58.470 41.667 0.00 0.00 0.00 3.74
4449 4586 5.599242 AGTTTATGGAGGGAGTACTAAGCTC 59.401 44.000 0.00 0.00 0.00 4.09
4450 4587 2.054232 TGGAGGGAGTACTAAGCTCG 57.946 55.000 0.00 0.00 34.00 5.03
4451 4588 1.562942 TGGAGGGAGTACTAAGCTCGA 59.437 52.381 0.00 0.00 34.00 4.04
4452 4589 2.223745 GGAGGGAGTACTAAGCTCGAG 58.776 57.143 8.45 8.45 34.00 4.04
4453 4590 2.158784 GGAGGGAGTACTAAGCTCGAGA 60.159 54.545 18.75 0.00 34.00 4.04
4454 4591 2.874086 GAGGGAGTACTAAGCTCGAGAC 59.126 54.545 18.75 7.74 34.00 3.36
4455 4592 2.239150 AGGGAGTACTAAGCTCGAGACA 59.761 50.000 18.75 0.00 34.00 3.41
4456 4593 2.614983 GGGAGTACTAAGCTCGAGACAG 59.385 54.545 18.75 11.49 34.00 3.51
4457 4594 3.272581 GGAGTACTAAGCTCGAGACAGT 58.727 50.000 18.75 16.65 34.00 3.55
4458 4595 3.690628 GGAGTACTAAGCTCGAGACAGTT 59.309 47.826 18.75 5.83 34.00 3.16
4459 4596 4.874966 GGAGTACTAAGCTCGAGACAGTTA 59.125 45.833 18.75 6.70 34.00 2.24
4460 4597 5.528320 GGAGTACTAAGCTCGAGACAGTTAT 59.472 44.000 18.75 7.15 34.00 1.89
4461 4598 6.038492 GGAGTACTAAGCTCGAGACAGTTATT 59.962 42.308 18.75 4.77 34.00 1.40
4462 4599 7.393841 AGTACTAAGCTCGAGACAGTTATTT 57.606 36.000 18.75 0.00 0.00 1.40
4463 4600 7.828712 AGTACTAAGCTCGAGACAGTTATTTT 58.171 34.615 18.75 0.00 0.00 1.82
4464 4601 8.305317 AGTACTAAGCTCGAGACAGTTATTTTT 58.695 33.333 18.75 0.00 0.00 1.94
4465 4602 7.352719 ACTAAGCTCGAGACAGTTATTTTTG 57.647 36.000 18.75 0.69 0.00 2.44
4466 4603 5.613358 AAGCTCGAGACAGTTATTTTTGG 57.387 39.130 18.75 0.00 0.00 3.28
4467 4604 4.894784 AGCTCGAGACAGTTATTTTTGGA 58.105 39.130 18.75 0.00 0.00 3.53
4468 4605 4.691216 AGCTCGAGACAGTTATTTTTGGAC 59.309 41.667 18.75 0.00 0.00 4.02
4469 4606 4.434330 GCTCGAGACAGTTATTTTTGGACG 60.434 45.833 18.75 0.00 0.00 4.79
4470 4607 3.991773 TCGAGACAGTTATTTTTGGACGG 59.008 43.478 0.00 0.00 0.00 4.79
4471 4608 3.991773 CGAGACAGTTATTTTTGGACGGA 59.008 43.478 0.00 0.00 0.00 4.69
4472 4609 4.091509 CGAGACAGTTATTTTTGGACGGAG 59.908 45.833 0.00 0.00 0.00 4.63
4473 4610 4.324267 AGACAGTTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
4474 4611 4.041198 AGACAGTTATTTTTGGACGGAGGA 59.959 41.667 0.00 0.00 0.00 3.71
4475 4612 4.324267 ACAGTTATTTTTGGACGGAGGAG 58.676 43.478 0.00 0.00 0.00 3.69
4476 4613 4.202430 ACAGTTATTTTTGGACGGAGGAGT 60.202 41.667 0.00 0.00 0.00 3.85
4596 4733 3.375922 ACCAAACTGTCTGGTAAACAACG 59.624 43.478 3.45 0.00 45.58 4.10
4696 4853 2.235016 TGGGAAATTCCACTCGTTTGG 58.765 47.619 14.68 0.00 38.64 3.28
4750 4909 6.749923 AAACCATAAGAAGAGAAGACATGC 57.250 37.500 0.00 0.00 0.00 4.06
4771 4930 8.000709 ACATGCATCTCAATTTCTATAGGGAAA 58.999 33.333 0.00 0.00 39.16 3.13
4772 4931 8.512956 CATGCATCTCAATTTCTATAGGGAAAG 58.487 37.037 0.00 0.00 38.38 2.62
4773 4932 7.805163 TGCATCTCAATTTCTATAGGGAAAGA 58.195 34.615 0.00 0.00 38.38 2.52
4774 4933 7.935755 TGCATCTCAATTTCTATAGGGAAAGAG 59.064 37.037 0.00 7.70 38.38 2.85
4775 4934 8.153550 GCATCTCAATTTCTATAGGGAAAGAGA 58.846 37.037 17.27 17.27 39.03 3.10
4778 4937 9.218525 TCTCAATTTCTATAGGGAAAGAGATGT 57.781 33.333 0.00 0.00 38.38 3.06
4779 4938 9.487790 CTCAATTTCTATAGGGAAAGAGATGTC 57.512 37.037 0.00 0.00 38.38 3.06
4780 4939 8.992349 TCAATTTCTATAGGGAAAGAGATGTCA 58.008 33.333 0.00 0.00 38.38 3.58
4781 4940 9.050601 CAATTTCTATAGGGAAAGAGATGTCAC 57.949 37.037 0.00 0.00 38.38 3.67
4782 4941 7.979786 TTTCTATAGGGAAAGAGATGTCACT 57.020 36.000 0.00 0.00 32.34 3.41
4783 4942 7.979786 TTCTATAGGGAAAGAGATGTCACTT 57.020 36.000 0.00 0.00 0.00 3.16
4784 4943 9.488762 TTTCTATAGGGAAAGAGATGTCACTTA 57.511 33.333 0.00 0.00 32.34 2.24
4785 4944 9.661954 TTCTATAGGGAAAGAGATGTCACTTAT 57.338 33.333 0.00 0.00 0.00 1.73
4786 4945 9.083422 TCTATAGGGAAAGAGATGTCACTTATG 57.917 37.037 0.00 0.00 0.00 1.90
4787 4946 7.682787 ATAGGGAAAGAGATGTCACTTATGT 57.317 36.000 0.00 0.00 0.00 2.29
4788 4947 5.983540 AGGGAAAGAGATGTCACTTATGTC 58.016 41.667 0.00 0.00 0.00 3.06
4789 4948 5.485353 AGGGAAAGAGATGTCACTTATGTCA 59.515 40.000 0.00 0.00 0.00 3.58
4790 4949 5.582665 GGGAAAGAGATGTCACTTATGTCAC 59.417 44.000 0.00 0.00 0.00 3.67
4791 4950 6.402222 GGAAAGAGATGTCACTTATGTCACT 58.598 40.000 0.00 0.00 0.00 3.41
4792 4951 6.876257 GGAAAGAGATGTCACTTATGTCACTT 59.124 38.462 0.00 0.00 0.00 3.16
4793 4952 7.064016 GGAAAGAGATGTCACTTATGTCACTTC 59.936 40.741 0.00 0.00 0.00 3.01
4794 4953 6.849085 AGAGATGTCACTTATGTCACTTCT 57.151 37.500 1.78 1.78 0.00 2.85
4795 4954 6.862209 AGAGATGTCACTTATGTCACTTCTC 58.138 40.000 15.88 15.88 33.63 2.87
4796 4955 6.435591 AGAGATGTCACTTATGTCACTTCTCA 59.564 38.462 21.70 0.34 34.81 3.27
4797 4956 6.997655 AGATGTCACTTATGTCACTTCTCAA 58.002 36.000 0.00 0.00 0.00 3.02
4798 4957 7.619050 AGATGTCACTTATGTCACTTCTCAAT 58.381 34.615 0.00 0.00 0.00 2.57
4799 4958 8.099537 AGATGTCACTTATGTCACTTCTCAATT 58.900 33.333 0.00 0.00 0.00 2.32
4800 4959 7.658179 TGTCACTTATGTCACTTCTCAATTC 57.342 36.000 0.00 0.00 0.00 2.17
4801 4960 7.216494 TGTCACTTATGTCACTTCTCAATTCA 58.784 34.615 0.00 0.00 0.00 2.57
4802 4961 7.714813 TGTCACTTATGTCACTTCTCAATTCAA 59.285 33.333 0.00 0.00 0.00 2.69
4803 4962 8.725148 GTCACTTATGTCACTTCTCAATTCAAT 58.275 33.333 0.00 0.00 0.00 2.57
4804 4963 9.288576 TCACTTATGTCACTTCTCAATTCAATT 57.711 29.630 0.00 0.00 0.00 2.32
4805 4964 9.552114 CACTTATGTCACTTCTCAATTCAATTC 57.448 33.333 0.00 0.00 0.00 2.17
4806 4965 8.734386 ACTTATGTCACTTCTCAATTCAATTCC 58.266 33.333 0.00 0.00 0.00 3.01
4807 4966 8.868522 TTATGTCACTTCTCAATTCAATTCCT 57.131 30.769 0.00 0.00 0.00 3.36
4808 4967 9.958180 TTATGTCACTTCTCAATTCAATTCCTA 57.042 29.630 0.00 0.00 0.00 2.94
4811 4970 9.605275 TGTCACTTCTCAATTCAATTCCTATAG 57.395 33.333 0.00 0.00 0.00 1.31
4812 4971 9.050601 GTCACTTCTCAATTCAATTCCTATAGG 57.949 37.037 13.07 13.07 0.00 2.57
4813 4972 8.213679 TCACTTCTCAATTCAATTCCTATAGGG 58.786 37.037 18.97 2.67 35.41 3.53
4814 4973 8.213679 CACTTCTCAATTCAATTCCTATAGGGA 58.786 37.037 18.97 11.08 43.41 4.20
4827 4986 6.031964 TCCTATAGGGAAAGAGATGTCACT 57.968 41.667 18.97 0.00 41.91 3.41
4828 4987 6.444704 TCCTATAGGGAAAGAGATGTCACTT 58.555 40.000 18.97 0.00 41.91 3.16
4829 4988 7.592736 TCCTATAGGGAAAGAGATGTCACTTA 58.407 38.462 18.97 0.00 41.91 2.24
4830 4989 8.235230 TCCTATAGGGAAAGAGATGTCACTTAT 58.765 37.037 18.97 0.00 41.91 1.73
4831 4990 8.310382 CCTATAGGGAAAGAGATGTCACTTATG 58.690 40.741 11.33 0.00 37.23 1.90
4832 4991 7.682787 ATAGGGAAAGAGATGTCACTTATGT 57.317 36.000 0.00 0.00 0.00 2.29
4833 4992 5.983540 AGGGAAAGAGATGTCACTTATGTC 58.016 41.667 0.00 0.00 0.00 3.06
4834 4993 5.485353 AGGGAAAGAGATGTCACTTATGTCA 59.515 40.000 0.00 0.00 0.00 3.58
4835 4994 5.582665 GGGAAAGAGATGTCACTTATGTCAC 59.417 44.000 0.00 0.00 0.00 3.67
4836 4995 6.402222 GGAAAGAGATGTCACTTATGTCACT 58.598 40.000 0.00 0.00 0.00 3.41
4837 4996 6.876257 GGAAAGAGATGTCACTTATGTCACTT 59.124 38.462 0.00 0.00 0.00 3.16
4838 4997 7.064016 GGAAAGAGATGTCACTTATGTCACTTC 59.936 40.741 0.00 0.00 0.00 3.01
4839 4998 6.849085 AGAGATGTCACTTATGTCACTTCT 57.151 37.500 1.78 1.78 0.00 2.85
4840 4999 6.862209 AGAGATGTCACTTATGTCACTTCTC 58.138 40.000 15.88 15.88 33.63 2.87
4841 5000 6.435591 AGAGATGTCACTTATGTCACTTCTCA 59.564 38.462 21.70 0.34 34.81 3.27
4842 5001 6.997655 AGATGTCACTTATGTCACTTCTCAA 58.002 36.000 0.00 0.00 0.00 3.02
4843 5002 7.619050 AGATGTCACTTATGTCACTTCTCAAT 58.381 34.615 0.00 0.00 0.00 2.57
4844 5003 8.099537 AGATGTCACTTATGTCACTTCTCAATT 58.900 33.333 0.00 0.00 0.00 2.32
4845 5004 7.658179 TGTCACTTATGTCACTTCTCAATTC 57.342 36.000 0.00 0.00 0.00 2.17
4846 5005 7.216494 TGTCACTTATGTCACTTCTCAATTCA 58.784 34.615 0.00 0.00 0.00 2.57
4847 5006 7.714813 TGTCACTTATGTCACTTCTCAATTCAA 59.285 33.333 0.00 0.00 0.00 2.69
4848 5007 8.725148 GTCACTTATGTCACTTCTCAATTCAAT 58.275 33.333 0.00 0.00 0.00 2.57
4849 5008 9.288576 TCACTTATGTCACTTCTCAATTCAATT 57.711 29.630 0.00 0.00 0.00 2.32
4850 5009 9.552114 CACTTATGTCACTTCTCAATTCAATTC 57.448 33.333 0.00 0.00 0.00 2.17
4851 5010 8.734386 ACTTATGTCACTTCTCAATTCAATTCC 58.266 33.333 0.00 0.00 0.00 3.01
4852 5011 8.868522 TTATGTCACTTCTCAATTCAATTCCT 57.131 30.769 0.00 0.00 0.00 3.36
4853 5012 9.958180 TTATGTCACTTCTCAATTCAATTCCTA 57.042 29.630 0.00 0.00 0.00 2.94
4890 5074 5.905331 TGTCACTTGATTCATAGGGTAGGAT 59.095 40.000 0.00 0.00 0.00 3.24
4970 5154 6.515272 GAATCCATTCCTACAAAGCAAAGA 57.485 37.500 0.00 0.00 0.00 2.52
5047 5231 2.437413 CACTAAACCAAAGGAGGCCTC 58.563 52.381 25.59 25.59 30.89 4.70
5062 5246 4.442706 GAGGCCTCGACTTATTTCATTCA 58.557 43.478 19.06 0.00 0.00 2.57
5080 5264 9.814899 TTTCATTCACATGATTGTAAAAACACT 57.185 25.926 0.00 0.00 39.28 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.226437 TGATTGCTTTTCTTCGAGCCAC 59.774 45.455 0.00 0.00 38.11 5.01
56 57 4.457834 TCTTTTGCCTCCGTTTCAAAAA 57.542 36.364 0.00 0.00 38.65 1.94
57 58 4.664150 ATCTTTTGCCTCCGTTTCAAAA 57.336 36.364 0.00 0.00 37.36 2.44
58 59 4.664150 AATCTTTTGCCTCCGTTTCAAA 57.336 36.364 0.00 0.00 0.00 2.69
59 60 4.367450 CAAATCTTTTGCCTCCGTTTCAA 58.633 39.130 0.00 0.00 0.00 2.69
60 61 3.798548 GCAAATCTTTTGCCTCCGTTTCA 60.799 43.478 12.74 0.00 39.38 2.69
61 62 2.731451 GCAAATCTTTTGCCTCCGTTTC 59.269 45.455 12.74 0.00 39.38 2.78
62 63 2.754472 GCAAATCTTTTGCCTCCGTTT 58.246 42.857 12.74 0.00 39.38 3.60
63 64 2.438868 GCAAATCTTTTGCCTCCGTT 57.561 45.000 12.74 0.00 39.38 4.44
70 71 3.598019 TGGATGAGGCAAATCTTTTGC 57.402 42.857 14.88 14.88 44.22 3.68
71 72 9.820725 TTATTAATGGATGAGGCAAATCTTTTG 57.179 29.630 0.00 0.00 0.00 2.44
74 75 8.146412 GCTTTATTAATGGATGAGGCAAATCTT 58.854 33.333 0.00 0.00 0.00 2.40
75 76 7.288389 TGCTTTATTAATGGATGAGGCAAATCT 59.712 33.333 0.00 0.00 0.00 2.40
76 77 7.436118 TGCTTTATTAATGGATGAGGCAAATC 58.564 34.615 0.00 0.00 0.00 2.17
77 78 7.288389 TCTGCTTTATTAATGGATGAGGCAAAT 59.712 33.333 0.00 0.00 0.00 2.32
78 79 6.606796 TCTGCTTTATTAATGGATGAGGCAAA 59.393 34.615 0.00 0.00 0.00 3.68
79 80 6.128486 TCTGCTTTATTAATGGATGAGGCAA 58.872 36.000 0.00 0.00 0.00 4.52
80 81 5.693961 TCTGCTTTATTAATGGATGAGGCA 58.306 37.500 0.00 0.00 0.00 4.75
81 82 6.488006 TCTTCTGCTTTATTAATGGATGAGGC 59.512 38.462 0.00 0.00 0.00 4.70
82 83 7.935755 TCTCTTCTGCTTTATTAATGGATGAGG 59.064 37.037 0.00 0.00 0.00 3.86
83 84 8.899427 TCTCTTCTGCTTTATTAATGGATGAG 57.101 34.615 0.00 0.00 0.00 2.90
84 85 9.857656 ATTCTCTTCTGCTTTATTAATGGATGA 57.142 29.630 0.00 0.00 0.00 2.92
87 88 8.408601 GCAATTCTCTTCTGCTTTATTAATGGA 58.591 33.333 0.00 0.00 33.20 3.41
88 89 7.650903 GGCAATTCTCTTCTGCTTTATTAATGG 59.349 37.037 0.00 0.00 36.32 3.16
89 90 7.650903 GGGCAATTCTCTTCTGCTTTATTAATG 59.349 37.037 0.00 0.00 36.32 1.90
90 91 7.342799 TGGGCAATTCTCTTCTGCTTTATTAAT 59.657 33.333 0.00 0.00 36.32 1.40
91 92 6.663093 TGGGCAATTCTCTTCTGCTTTATTAA 59.337 34.615 0.00 0.00 36.32 1.40
92 93 6.186957 TGGGCAATTCTCTTCTGCTTTATTA 58.813 36.000 0.00 0.00 36.32 0.98
93 94 5.018809 TGGGCAATTCTCTTCTGCTTTATT 58.981 37.500 0.00 0.00 36.32 1.40
94 95 4.603131 TGGGCAATTCTCTTCTGCTTTAT 58.397 39.130 0.00 0.00 36.32 1.40
95 96 4.012374 CTGGGCAATTCTCTTCTGCTTTA 58.988 43.478 0.00 0.00 36.32 1.85
96 97 2.824341 CTGGGCAATTCTCTTCTGCTTT 59.176 45.455 0.00 0.00 36.32 3.51
97 98 2.224967 ACTGGGCAATTCTCTTCTGCTT 60.225 45.455 0.00 0.00 36.32 3.91
98 99 1.353694 ACTGGGCAATTCTCTTCTGCT 59.646 47.619 0.00 0.00 36.32 4.24
99 100 1.831580 ACTGGGCAATTCTCTTCTGC 58.168 50.000 0.00 0.00 35.28 4.26
100 101 6.521151 AATTAACTGGGCAATTCTCTTCTG 57.479 37.500 0.00 0.00 0.00 3.02
101 102 7.148239 CGTTAATTAACTGGGCAATTCTCTTCT 60.148 37.037 22.57 0.00 34.12 2.85
102 103 6.967199 CGTTAATTAACTGGGCAATTCTCTTC 59.033 38.462 22.57 0.00 34.12 2.87
103 104 6.127730 CCGTTAATTAACTGGGCAATTCTCTT 60.128 38.462 22.57 0.00 34.12 2.85
104 105 5.357032 CCGTTAATTAACTGGGCAATTCTCT 59.643 40.000 22.57 0.00 34.12 3.10
105 106 5.355910 TCCGTTAATTAACTGGGCAATTCTC 59.644 40.000 25.42 2.87 33.65 2.87
106 107 5.258051 TCCGTTAATTAACTGGGCAATTCT 58.742 37.500 25.42 0.00 33.65 2.40
107 108 5.570234 TCCGTTAATTAACTGGGCAATTC 57.430 39.130 25.42 3.42 33.65 2.17
108 109 5.986501 TTCCGTTAATTAACTGGGCAATT 57.013 34.783 25.42 0.00 33.65 2.32
109 110 5.986501 TTTCCGTTAATTAACTGGGCAAT 57.013 34.783 25.42 0.00 33.65 3.56
110 111 5.509332 GGTTTTCCGTTAATTAACTGGGCAA 60.509 40.000 25.42 19.34 33.65 4.52
111 112 4.022155 GGTTTTCCGTTAATTAACTGGGCA 60.022 41.667 25.42 16.39 33.65 5.36
112 113 4.487948 GGTTTTCCGTTAATTAACTGGGC 58.512 43.478 25.42 17.56 33.65 5.36
127 128 1.007038 GGTTTTCGCCCGGTTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
128 129 1.370778 CGGTTTTCGCCCGGTTTTC 60.371 57.895 0.00 0.00 41.78 2.29
129 130 2.723116 CGGTTTTCGCCCGGTTTT 59.277 55.556 0.00 0.00 41.78 2.43
135 136 0.109919 GATTGTGACGGTTTTCGCCC 60.110 55.000 0.00 0.00 43.89 6.13
136 137 0.109919 GGATTGTGACGGTTTTCGCC 60.110 55.000 0.00 0.00 43.89 5.54
137 138 0.452122 CGGATTGTGACGGTTTTCGC 60.452 55.000 0.00 0.00 43.89 4.70
138 139 0.452122 GCGGATTGTGACGGTTTTCG 60.452 55.000 0.00 0.00 45.88 3.46
139 140 0.872388 AGCGGATTGTGACGGTTTTC 59.128 50.000 0.00 0.00 37.57 2.29
140 141 0.591170 CAGCGGATTGTGACGGTTTT 59.409 50.000 0.00 0.00 38.94 2.43
141 142 0.250124 TCAGCGGATTGTGACGGTTT 60.250 50.000 0.00 0.00 38.94 3.27
142 143 0.670546 CTCAGCGGATTGTGACGGTT 60.671 55.000 0.00 0.00 38.94 4.44
143 144 1.079819 CTCAGCGGATTGTGACGGT 60.080 57.895 0.00 0.00 41.98 4.83
144 145 2.456119 GCTCAGCGGATTGTGACGG 61.456 63.158 0.00 0.00 0.00 4.79
145 146 3.084579 GCTCAGCGGATTGTGACG 58.915 61.111 0.00 0.00 0.00 4.35
156 157 2.176273 CCTATGTGTGCCGCTCAGC 61.176 63.158 0.00 0.00 0.00 4.26
157 158 0.108186 TTCCTATGTGTGCCGCTCAG 60.108 55.000 0.00 0.00 0.00 3.35
158 159 0.541392 ATTCCTATGTGTGCCGCTCA 59.459 50.000 0.00 0.00 0.00 4.26
159 160 1.221414 GATTCCTATGTGTGCCGCTC 58.779 55.000 0.00 0.00 0.00 5.03
160 161 0.179045 GGATTCCTATGTGTGCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
161 162 0.463654 TGGATTCCTATGTGTGCCGC 60.464 55.000 3.95 0.00 0.00 6.53
162 163 2.146342 GATGGATTCCTATGTGTGCCG 58.854 52.381 3.95 0.00 0.00 5.69
163 164 3.213206 TGATGGATTCCTATGTGTGCC 57.787 47.619 3.95 0.00 0.00 5.01
164 165 4.581824 ACATTGATGGATTCCTATGTGTGC 59.418 41.667 3.95 0.00 31.26 4.57
165 166 5.591472 ACACATTGATGGATTCCTATGTGTG 59.409 40.000 26.79 22.83 46.67 3.82
166 167 5.759059 ACACATTGATGGATTCCTATGTGT 58.241 37.500 24.47 24.47 45.32 3.72
167 168 6.704289 AACACATTGATGGATTCCTATGTG 57.296 37.500 23.68 23.68 44.20 3.21
168 169 6.488006 GCTAACACATTGATGGATTCCTATGT 59.512 38.462 3.95 6.00 32.08 2.29
169 170 6.072286 GGCTAACACATTGATGGATTCCTATG 60.072 42.308 3.95 5.43 0.00 2.23
170 171 6.006449 GGCTAACACATTGATGGATTCCTAT 58.994 40.000 3.95 0.00 0.00 2.57
171 172 5.104151 TGGCTAACACATTGATGGATTCCTA 60.104 40.000 3.95 0.00 0.00 2.94
191 192 2.831526 ACCGGCTGATTTTATTTTGGCT 59.168 40.909 0.00 0.00 0.00 4.75
258 259 5.944007 GTGGACCTGGTATAGAACATGTTTT 59.056 40.000 13.36 9.88 0.00 2.43
340 343 1.075374 AGCCCCTTTATGTTGAGCACA 59.925 47.619 0.00 0.00 40.71 4.57
469 473 6.550108 AGTTATGCCGGATCCGTCTATTATAT 59.450 38.462 31.22 10.75 37.81 0.86
495 499 3.118702 TGGTTTCTGTTACGTCCTGTCAA 60.119 43.478 0.00 0.00 0.00 3.18
508 512 4.520492 CCTCTGTTTATGCTTGGTTTCTGT 59.480 41.667 0.00 0.00 0.00 3.41
547 551 0.667792 GAAGTCCCTCGTCTGCACAC 60.668 60.000 0.00 0.00 0.00 3.82
548 552 1.666011 GAAGTCCCTCGTCTGCACA 59.334 57.895 0.00 0.00 0.00 4.57
856 860 2.124570 CAACCAGGATCGGCCCAG 60.125 66.667 0.00 0.00 37.37 4.45
891 896 2.192861 CAGTTGGCCCACGCTTCAA 61.193 57.895 0.00 0.00 34.44 2.69
908 913 0.464036 AAAGGTCACGTGACAGAGCA 59.536 50.000 40.51 8.90 46.47 4.26
918 923 0.666577 GGACACGGAGAAAGGTCACG 60.667 60.000 0.00 0.00 33.98 4.35
1223 1228 5.609533 AGGGTATTATTGCGAGTAAGTGT 57.390 39.130 0.00 0.00 0.00 3.55
1229 1234 5.864418 TTGTCTAGGGTATTATTGCGAGT 57.136 39.130 0.00 0.00 0.00 4.18
1240 1245 5.957771 ATTGAGCAGAATTGTCTAGGGTA 57.042 39.130 0.00 0.00 30.85 3.69
1259 1264 3.004024 AGCAACACGCAGAAAGAATTG 57.996 42.857 0.00 0.00 46.13 2.32
1311 1325 5.567037 TGCATACCATATCCTAACAGCTT 57.433 39.130 0.00 0.00 0.00 3.74
1329 1343 4.432712 AGCGTTGTTCTTTCTTTTTGCAT 58.567 34.783 0.00 0.00 0.00 3.96
1381 1395 6.607689 TGAAAGTGCAATATAACCAGAAACG 58.392 36.000 0.00 0.00 0.00 3.60
1417 1431 1.736126 CAAGCCATGTAGTGAGCACTG 59.264 52.381 13.12 0.00 42.52 3.66
1582 1596 4.863707 ATCGCCACGATTGCAGAT 57.136 50.000 0.00 0.00 44.59 2.90
1601 1615 5.092554 TCAGAGTACTCTACAGTCCTGAG 57.907 47.826 24.75 8.90 37.98 3.35
1909 1923 4.544564 AGAGAGCTAATACTCCCCAGAA 57.455 45.455 0.00 0.00 37.39 3.02
1916 1930 3.804873 CCGCCAAAAGAGAGCTAATACTC 59.195 47.826 0.00 0.00 36.91 2.59
1922 1936 1.610624 CCAACCGCCAAAAGAGAGCTA 60.611 52.381 0.00 0.00 0.00 3.32
2294 2311 6.323996 ACACAAGCATGCCTCTACTTATACTA 59.676 38.462 15.66 0.00 0.00 1.82
2358 2375 2.074547 ACAAGCTGCATTGCATCAAC 57.925 45.000 12.53 2.58 38.13 3.18
2429 2446 8.840321 CGATGACCAATAAAAATCCATACTTCT 58.160 33.333 0.00 0.00 0.00 2.85
2636 2653 3.633609 CTGGCAGCCAGCAGCCTTA 62.634 63.158 28.85 6.75 45.13 2.69
2762 2781 8.244113 CCCAGAACCTTGAAAATCACTTTATAC 58.756 37.037 0.00 0.00 0.00 1.47
2788 2807 7.012327 TGCCAAAGCTAACTTATATGACATGAC 59.988 37.037 0.00 0.00 40.80 3.06
2854 2874 6.699575 AATGTGCATAACAAGTTATCTCCC 57.300 37.500 2.59 0.00 43.61 4.30
2938 2959 3.075283 TCCAAAGTTTAGGGAAGCCATGA 59.925 43.478 0.00 0.00 0.00 3.07
3135 3156 8.738645 ATTCATTTTAGAGGGTTCTATGACAC 57.261 34.615 0.00 0.00 35.88 3.67
3199 3303 2.717639 ATAGTGGACATCAGCCCAAC 57.282 50.000 0.00 0.00 33.69 3.77
3411 3531 2.653448 CTCGAGACATGGAGCGCG 60.653 66.667 6.58 0.00 0.00 6.86
3592 3712 1.770658 CATAAGATGACCCAGGCTGGA 59.229 52.381 34.84 15.88 40.96 3.86
3597 3717 2.053244 AGGAGCATAAGATGACCCAGG 58.947 52.381 0.00 0.00 0.00 4.45
3600 3720 7.554476 GGAATAATTAGGAGCATAAGATGACCC 59.446 40.741 0.00 0.00 0.00 4.46
3613 3734 8.348507 GCAGTTCAAAGATGGAATAATTAGGAG 58.651 37.037 0.00 0.00 0.00 3.69
3720 3841 0.038166 GACACTGGATTGCAAGGGGA 59.962 55.000 4.94 0.00 0.00 4.81
3723 3844 2.227388 GACAAGACACTGGATTGCAAGG 59.773 50.000 4.94 0.00 0.00 3.61
3767 3902 0.033601 ACTTGGACACAGGGTTGCAA 60.034 50.000 0.00 0.00 0.00 4.08
3806 3941 6.207221 TGACATTGTGCTATATGCCCTTAATG 59.793 38.462 0.00 0.00 42.00 1.90
3892 4029 7.495901 AGTCTCATTGGTGATTATCTGTACTG 58.504 38.462 0.00 0.00 32.98 2.74
4033 4170 0.698238 TGTTTGCCAGATAGCCAGGT 59.302 50.000 0.00 0.00 0.00 4.00
4095 4232 0.235665 ACAGTTTTGATGCTGCGACG 59.764 50.000 0.00 0.00 36.26 5.12
4123 4260 1.062587 CCGCCTACAAGCTTCAATTCG 59.937 52.381 0.00 0.00 0.00 3.34
4181 4318 4.597004 TCTACTGACTTATTCCTCCGTGT 58.403 43.478 0.00 0.00 0.00 4.49
4198 4335 4.024472 CAGATGATCACGTCGACATCTACT 60.024 45.833 17.16 10.96 44.70 2.57
4300 4437 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4301 4438 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4302 4439 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4303 4440 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4304 4441 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4305 4442 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
4306 4443 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
4307 4444 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
4308 4445 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
4309 4446 8.410912 ACAAAGTTAAGACACTTATTTTGGGAC 58.589 33.333 19.96 6.58 35.87 4.46
4310 4447 8.528044 ACAAAGTTAAGACACTTATTTTGGGA 57.472 30.769 19.96 0.00 35.87 4.37
4311 4448 9.673454 GTACAAAGTTAAGACACTTATTTTGGG 57.327 33.333 19.96 8.06 35.87 4.12
4319 4456 8.959705 AAAGCTAGTACAAAGTTAAGACACTT 57.040 30.769 0.00 0.00 38.74 3.16
4320 4457 9.694137 CTAAAGCTAGTACAAAGTTAAGACACT 57.306 33.333 0.00 0.00 0.00 3.55
4321 4458 9.473640 ACTAAAGCTAGTACAAAGTTAAGACAC 57.526 33.333 0.00 0.00 36.56 3.67
4347 4484 6.982160 TTACAGAGGGAGTACAACTTTGTA 57.018 37.500 9.34 9.34 42.35 2.41
4348 4485 5.881923 TTACAGAGGGAGTACAACTTTGT 57.118 39.130 10.77 10.77 44.86 2.83
4349 4486 6.289064 AGTTTACAGAGGGAGTACAACTTTG 58.711 40.000 0.00 0.00 0.00 2.77
4350 4487 6.496144 AGTTTACAGAGGGAGTACAACTTT 57.504 37.500 0.00 0.00 0.00 2.66
4351 4488 7.607615 TTAGTTTACAGAGGGAGTACAACTT 57.392 36.000 0.00 0.00 31.60 2.66
4352 4489 7.793948 ATTAGTTTACAGAGGGAGTACAACT 57.206 36.000 0.00 0.00 32.70 3.16
4358 4495 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
4359 4496 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4360 4497 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4361 4498 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4362 4499 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4410 4547 9.490379 CCTCCATAAACTAATATAAGAGCGTTT 57.510 33.333 0.00 0.00 0.00 3.60
4411 4548 8.095169 CCCTCCATAAACTAATATAAGAGCGTT 58.905 37.037 0.00 0.00 0.00 4.84
4412 4549 7.453752 TCCCTCCATAAACTAATATAAGAGCGT 59.546 37.037 0.00 0.00 0.00 5.07
4413 4550 7.837863 TCCCTCCATAAACTAATATAAGAGCG 58.162 38.462 0.00 0.00 0.00 5.03
4414 4551 8.817876 ACTCCCTCCATAAACTAATATAAGAGC 58.182 37.037 0.00 0.00 0.00 4.09
4421 4558 9.086758 GCTTAGTACTCCCTCCATAAACTAATA 57.913 37.037 0.00 0.00 30.17 0.98
4422 4559 7.790314 AGCTTAGTACTCCCTCCATAAACTAAT 59.210 37.037 0.00 0.00 30.17 1.73
4423 4560 7.130775 AGCTTAGTACTCCCTCCATAAACTAA 58.869 38.462 0.00 0.00 0.00 2.24
4424 4561 6.680540 AGCTTAGTACTCCCTCCATAAACTA 58.319 40.000 0.00 0.00 0.00 2.24
4425 4562 5.530243 AGCTTAGTACTCCCTCCATAAACT 58.470 41.667 0.00 0.00 0.00 2.66
4426 4563 5.507650 CGAGCTTAGTACTCCCTCCATAAAC 60.508 48.000 0.00 0.00 0.00 2.01
4427 4564 4.583489 CGAGCTTAGTACTCCCTCCATAAA 59.417 45.833 0.00 0.00 0.00 1.40
4428 4565 4.141321 TCGAGCTTAGTACTCCCTCCATAA 60.141 45.833 0.00 0.00 0.00 1.90
4429 4566 3.393609 TCGAGCTTAGTACTCCCTCCATA 59.606 47.826 0.00 0.00 0.00 2.74
4430 4567 2.175069 TCGAGCTTAGTACTCCCTCCAT 59.825 50.000 0.00 0.00 0.00 3.41
4431 4568 1.562942 TCGAGCTTAGTACTCCCTCCA 59.437 52.381 0.00 0.00 0.00 3.86
4432 4569 2.158784 TCTCGAGCTTAGTACTCCCTCC 60.159 54.545 7.81 0.00 0.00 4.30
4433 4570 2.874086 GTCTCGAGCTTAGTACTCCCTC 59.126 54.545 7.81 3.02 0.00 4.30
4434 4571 2.239150 TGTCTCGAGCTTAGTACTCCCT 59.761 50.000 7.81 0.00 0.00 4.20
4435 4572 2.614983 CTGTCTCGAGCTTAGTACTCCC 59.385 54.545 7.81 0.00 0.00 4.30
4436 4573 3.272581 ACTGTCTCGAGCTTAGTACTCC 58.727 50.000 7.81 0.00 0.00 3.85
4437 4574 4.950434 AACTGTCTCGAGCTTAGTACTC 57.050 45.455 7.81 0.00 0.00 2.59
4438 4575 7.393841 AAATAACTGTCTCGAGCTTAGTACT 57.606 36.000 7.81 0.00 0.00 2.73
4439 4576 8.373992 CAAAAATAACTGTCTCGAGCTTAGTAC 58.626 37.037 7.81 0.00 0.00 2.73
4440 4577 7.544566 CCAAAAATAACTGTCTCGAGCTTAGTA 59.455 37.037 7.81 0.00 0.00 1.82
4441 4578 6.369065 CCAAAAATAACTGTCTCGAGCTTAGT 59.631 38.462 7.81 8.78 0.00 2.24
4442 4579 6.590292 TCCAAAAATAACTGTCTCGAGCTTAG 59.410 38.462 7.81 8.12 0.00 2.18
4443 4580 6.367969 GTCCAAAAATAACTGTCTCGAGCTTA 59.632 38.462 7.81 1.14 0.00 3.09
4444 4581 5.179555 GTCCAAAAATAACTGTCTCGAGCTT 59.820 40.000 7.81 0.00 0.00 3.74
4445 4582 4.691216 GTCCAAAAATAACTGTCTCGAGCT 59.309 41.667 7.81 0.00 0.00 4.09
4446 4583 4.434330 CGTCCAAAAATAACTGTCTCGAGC 60.434 45.833 7.81 3.58 0.00 5.03
4447 4584 4.091509 CCGTCCAAAAATAACTGTCTCGAG 59.908 45.833 5.93 5.93 0.00 4.04
4448 4585 3.991773 CCGTCCAAAAATAACTGTCTCGA 59.008 43.478 0.00 0.00 0.00 4.04
4449 4586 3.991773 TCCGTCCAAAAATAACTGTCTCG 59.008 43.478 0.00 0.00 0.00 4.04
4450 4587 4.392138 CCTCCGTCCAAAAATAACTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
4451 4588 4.041198 TCCTCCGTCCAAAAATAACTGTCT 59.959 41.667 0.00 0.00 0.00 3.41
4452 4589 4.320870 TCCTCCGTCCAAAAATAACTGTC 58.679 43.478 0.00 0.00 0.00 3.51
4453 4590 4.202430 ACTCCTCCGTCCAAAAATAACTGT 60.202 41.667 0.00 0.00 0.00 3.55
4454 4591 4.324267 ACTCCTCCGTCCAAAAATAACTG 58.676 43.478 0.00 0.00 0.00 3.16
4455 4592 4.635699 ACTCCTCCGTCCAAAAATAACT 57.364 40.909 0.00 0.00 0.00 2.24
4456 4593 6.596497 TCAATACTCCTCCGTCCAAAAATAAC 59.404 38.462 0.00 0.00 0.00 1.89
4457 4594 6.713276 TCAATACTCCTCCGTCCAAAAATAA 58.287 36.000 0.00 0.00 0.00 1.40
4458 4595 6.302535 TCAATACTCCTCCGTCCAAAAATA 57.697 37.500 0.00 0.00 0.00 1.40
4459 4596 5.174037 TCAATACTCCTCCGTCCAAAAAT 57.826 39.130 0.00 0.00 0.00 1.82
4460 4597 4.627284 TCAATACTCCTCCGTCCAAAAA 57.373 40.909 0.00 0.00 0.00 1.94
4461 4598 4.019681 ACATCAATACTCCTCCGTCCAAAA 60.020 41.667 0.00 0.00 0.00 2.44
4462 4599 3.517901 ACATCAATACTCCTCCGTCCAAA 59.482 43.478 0.00 0.00 0.00 3.28
4463 4600 3.104512 ACATCAATACTCCTCCGTCCAA 58.895 45.455 0.00 0.00 0.00 3.53
4464 4601 2.747177 ACATCAATACTCCTCCGTCCA 58.253 47.619 0.00 0.00 0.00 4.02
4465 4602 4.023021 GTCTACATCAATACTCCTCCGTCC 60.023 50.000 0.00 0.00 0.00 4.79
4466 4603 4.579340 TGTCTACATCAATACTCCTCCGTC 59.421 45.833 0.00 0.00 0.00 4.79
4467 4604 4.533815 TGTCTACATCAATACTCCTCCGT 58.466 43.478 0.00 0.00 0.00 4.69
4468 4605 5.465051 CATGTCTACATCAATACTCCTCCG 58.535 45.833 0.00 0.00 33.61 4.63
4469 4606 5.540337 TCCATGTCTACATCAATACTCCTCC 59.460 44.000 0.00 0.00 33.61 4.30
4470 4607 6.656632 TCCATGTCTACATCAATACTCCTC 57.343 41.667 0.00 0.00 33.61 3.71
4471 4608 7.623999 AATCCATGTCTACATCAATACTCCT 57.376 36.000 0.00 0.00 33.61 3.69
4472 4609 7.173907 CCAAATCCATGTCTACATCAATACTCC 59.826 40.741 0.00 0.00 33.61 3.85
4473 4610 7.173907 CCCAAATCCATGTCTACATCAATACTC 59.826 40.741 0.00 0.00 33.61 2.59
4474 4611 7.000472 CCCAAATCCATGTCTACATCAATACT 59.000 38.462 0.00 0.00 33.61 2.12
4475 4612 6.772716 ACCCAAATCCATGTCTACATCAATAC 59.227 38.462 0.00 0.00 33.61 1.89
4476 4613 6.910191 ACCCAAATCCATGTCTACATCAATA 58.090 36.000 0.00 0.00 33.61 1.90
4689 4846 5.943349 TTCCTATCCTATGAACCAAACGA 57.057 39.130 0.00 0.00 0.00 3.85
4690 4847 8.848474 AATATTCCTATCCTATGAACCAAACG 57.152 34.615 0.00 0.00 0.00 3.60
4726 4883 6.716628 TGCATGTCTTCTCTTCTTATGGTTTT 59.283 34.615 0.00 0.00 0.00 2.43
4735 4892 5.417754 TTGAGATGCATGTCTTCTCTTCT 57.582 39.130 22.90 2.06 42.98 2.85
4771 4930 6.849085 AGAAGTGACATAAGTGACATCTCT 57.151 37.500 0.00 0.00 35.51 3.10
4773 4932 6.596309 TGAGAAGTGACATAAGTGACATCT 57.404 37.500 0.00 0.00 41.44 2.90
4774 4933 7.840342 ATTGAGAAGTGACATAAGTGACATC 57.160 36.000 0.00 0.00 34.00 3.06
4775 4934 7.879677 TGAATTGAGAAGTGACATAAGTGACAT 59.120 33.333 0.00 0.00 34.00 3.06
4776 4935 7.216494 TGAATTGAGAAGTGACATAAGTGACA 58.784 34.615 0.00 0.00 34.00 3.58
4777 4936 7.658179 TGAATTGAGAAGTGACATAAGTGAC 57.342 36.000 0.00 0.00 31.46 3.67
4778 4937 8.853077 ATTGAATTGAGAAGTGACATAAGTGA 57.147 30.769 0.00 0.00 0.00 3.41
4779 4938 9.552114 GAATTGAATTGAGAAGTGACATAAGTG 57.448 33.333 0.00 0.00 0.00 3.16
4780 4939 8.734386 GGAATTGAATTGAGAAGTGACATAAGT 58.266 33.333 0.00 0.00 0.00 2.24
4781 4940 8.954350 AGGAATTGAATTGAGAAGTGACATAAG 58.046 33.333 0.00 0.00 0.00 1.73
4782 4941 8.868522 AGGAATTGAATTGAGAAGTGACATAA 57.131 30.769 0.00 0.00 0.00 1.90
4785 4944 9.605275 CTATAGGAATTGAATTGAGAAGTGACA 57.395 33.333 0.00 0.00 0.00 3.58
4786 4945 9.050601 CCTATAGGAATTGAATTGAGAAGTGAC 57.949 37.037 14.11 0.00 37.39 3.67
4787 4946 8.213679 CCCTATAGGAATTGAATTGAGAAGTGA 58.786 37.037 21.07 0.00 38.24 3.41
4788 4947 8.213679 TCCCTATAGGAATTGAATTGAGAAGTG 58.786 37.037 21.07 0.00 43.78 3.16
4789 4948 8.337118 TCCCTATAGGAATTGAATTGAGAAGT 57.663 34.615 21.07 0.00 43.78 3.01
4804 4963 6.031964 AGTGACATCTCTTTCCCTATAGGA 57.968 41.667 21.07 3.60 45.68 2.94
4805 4964 6.739331 AAGTGACATCTCTTTCCCTATAGG 57.261 41.667 12.27 12.27 0.00 2.57
4806 4965 8.865090 ACATAAGTGACATCTCTTTCCCTATAG 58.135 37.037 1.83 0.00 32.65 1.31
4807 4966 8.783660 ACATAAGTGACATCTCTTTCCCTATA 57.216 34.615 1.83 0.00 32.65 1.31
4808 4967 7.345653 TGACATAAGTGACATCTCTTTCCCTAT 59.654 37.037 1.83 0.00 32.65 2.57
4809 4968 6.667848 TGACATAAGTGACATCTCTTTCCCTA 59.332 38.462 1.83 0.00 32.65 3.53
4810 4969 5.485353 TGACATAAGTGACATCTCTTTCCCT 59.515 40.000 1.83 0.00 32.65 4.20
4811 4970 5.582665 GTGACATAAGTGACATCTCTTTCCC 59.417 44.000 1.83 0.00 32.91 3.97
4812 4971 6.402222 AGTGACATAAGTGACATCTCTTTCC 58.598 40.000 1.83 0.00 34.00 3.13
4813 4972 7.816995 AGAAGTGACATAAGTGACATCTCTTTC 59.183 37.037 1.83 0.00 35.51 2.62
4814 4973 7.675062 AGAAGTGACATAAGTGACATCTCTTT 58.325 34.615 1.83 0.00 35.51 2.52
4815 4974 7.238486 AGAAGTGACATAAGTGACATCTCTT 57.762 36.000 2.13 2.13 35.51 2.85
4816 4975 6.849085 AGAAGTGACATAAGTGACATCTCT 57.151 37.500 0.00 0.00 35.51 3.10
4818 4977 6.596309 TGAGAAGTGACATAAGTGACATCT 57.404 37.500 0.00 0.00 41.44 2.90
4819 4978 7.840342 ATTGAGAAGTGACATAAGTGACATC 57.160 36.000 0.00 0.00 34.00 3.06
4820 4979 7.879677 TGAATTGAGAAGTGACATAAGTGACAT 59.120 33.333 0.00 0.00 34.00 3.06
4821 4980 7.216494 TGAATTGAGAAGTGACATAAGTGACA 58.784 34.615 0.00 0.00 34.00 3.58
4822 4981 7.658179 TGAATTGAGAAGTGACATAAGTGAC 57.342 36.000 0.00 0.00 31.46 3.67
4823 4982 8.853077 ATTGAATTGAGAAGTGACATAAGTGA 57.147 30.769 0.00 0.00 0.00 3.41
4824 4983 9.552114 GAATTGAATTGAGAAGTGACATAAGTG 57.448 33.333 0.00 0.00 0.00 3.16
4825 4984 8.734386 GGAATTGAATTGAGAAGTGACATAAGT 58.266 33.333 0.00 0.00 0.00 2.24
4826 4985 8.954350 AGGAATTGAATTGAGAAGTGACATAAG 58.046 33.333 0.00 0.00 0.00 1.73
4827 4986 8.868522 AGGAATTGAATTGAGAAGTGACATAA 57.131 30.769 0.00 0.00 0.00 1.90
4830 4989 9.605275 CTATAGGAATTGAATTGAGAAGTGACA 57.395 33.333 0.00 0.00 0.00 3.58
4831 4990 9.050601 CCTATAGGAATTGAATTGAGAAGTGAC 57.949 37.037 14.11 0.00 37.39 3.67
4832 4991 8.213679 CCCTATAGGAATTGAATTGAGAAGTGA 58.786 37.037 21.07 0.00 38.24 3.41
4833 4992 8.213679 TCCCTATAGGAATTGAATTGAGAAGTG 58.786 37.037 21.07 0.00 43.78 3.16
4834 4993 8.337118 TCCCTATAGGAATTGAATTGAGAAGT 57.663 34.615 21.07 0.00 43.78 3.01
4849 5008 6.031964 AGTGACATCTCTTTCCCTATAGGA 57.968 41.667 21.07 3.60 45.68 2.94
4850 5009 6.325028 TCAAGTGACATCTCTTTCCCTATAGG 59.675 42.308 12.27 12.27 0.00 2.57
4851 5010 7.353414 TCAAGTGACATCTCTTTCCCTATAG 57.647 40.000 0.00 0.00 0.00 1.31
4852 5011 7.921041 ATCAAGTGACATCTCTTTCCCTATA 57.079 36.000 0.00 0.00 0.00 1.31
4853 5012 6.821616 ATCAAGTGACATCTCTTTCCCTAT 57.178 37.500 0.00 0.00 0.00 2.57
4854 5013 6.213397 TGAATCAAGTGACATCTCTTTCCCTA 59.787 38.462 0.00 0.00 0.00 3.53
4970 5154 4.588528 TGTAGGCAAAATTTCTTTGGAGCT 59.411 37.500 0.00 0.00 0.00 4.09
5028 5212 1.003233 CGAGGCCTCCTTTGGTTTAGT 59.997 52.381 27.20 0.00 31.76 2.24
5047 5231 9.986833 TTACAATCATGTGAATGAAATAAGTCG 57.013 29.630 5.15 0.00 40.84 4.18
5062 5246 8.522830 CCTATTCCAGTGTTTTTACAATCATGT 58.477 33.333 0.00 0.00 43.74 3.21
5080 5264 7.227910 GCCTAATCACGTATTTTTCCTATTCCA 59.772 37.037 0.00 0.00 0.00 3.53
5097 5281 2.808906 ACCAAAGGAGGCCTAATCAC 57.191 50.000 4.42 0.00 31.13 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.