Multiple sequence alignment - TraesCS1B01G232900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G232900 chr1B 100.000 6210 0 0 1 6210 418678358 418672149 0.000000e+00 11468.0
1 TraesCS1B01G232900 chr1B 76.455 378 61 17 3745 4099 677584904 677585276 4.950000e-41 180.0
2 TraesCS1B01G232900 chr1B 87.755 49 4 2 3476 3522 436534848 436534896 8.700000e-04 56.5
3 TraesCS1B01G232900 chr1D 95.683 2131 76 10 4092 6210 308587333 308585207 0.000000e+00 3411.0
4 TraesCS1B01G232900 chr1D 91.101 2416 97 37 1 2356 308589683 308587326 0.000000e+00 3162.0
5 TraesCS1B01G232900 chr1D 100.000 29 0 0 3493 3521 460764019 460763991 3.000000e-03 54.7
6 TraesCS1B01G232900 chr1A 94.611 2134 91 12 4092 6210 388161809 388159685 0.000000e+00 3282.0
7 TraesCS1B01G232900 chr1A 90.161 1118 68 17 1260 2356 388162898 388161802 0.000000e+00 1417.0
8 TraesCS1B01G232900 chr1A 95.404 718 13 6 2 702 388164291 388163577 0.000000e+00 1125.0
9 TraesCS1B01G232900 chr1A 92.901 493 18 6 787 1272 388163401 388162919 0.000000e+00 701.0
10 TraesCS1B01G232900 chr1A 85.833 120 6 3 687 796 388163550 388163432 3.930000e-22 117.0
11 TraesCS1B01G232900 chr7A 84.424 642 85 13 2882 3512 26787837 26787200 8.840000e-173 617.0
12 TraesCS1B01G232900 chr7A 83.670 643 89 13 2882 3512 29029885 29029247 5.360000e-165 592.0
13 TraesCS1B01G232900 chr7A 80.515 621 90 24 2897 3508 158193511 158192913 1.230000e-121 448.0
14 TraesCS1B01G232900 chr7A 88.298 94 5 4 3378 3470 118107948 118107860 2.370000e-19 108.0
15 TraesCS1B01G232900 chr7B 77.595 1031 150 40 2647 3621 526712474 526713479 3.270000e-152 549.0
16 TraesCS1B01G232900 chr7B 78.030 660 99 34 2857 3497 683472691 683472059 2.110000e-99 374.0
17 TraesCS1B01G232900 chr7B 74.708 514 101 19 3602 4090 526712813 526712304 1.060000e-47 202.0
18 TraesCS1B01G232900 chr5B 77.561 1025 141 39 2662 3621 372240749 372239749 2.550000e-148 536.0
19 TraesCS1B01G232900 chr5B 74.806 516 99 21 3602 4091 372240425 372240935 2.930000e-48 204.0
20 TraesCS1B01G232900 chr5B 87.500 48 4 2 3476 3521 423214699 423214746 3.000000e-03 54.7
21 TraesCS1B01G232900 chr2A 78.204 913 145 29 2667 3540 103575150 103574253 9.160000e-148 534.0
22 TraesCS1B01G232900 chr2A 77.108 249 33 12 3525 3751 103574242 103573996 8.450000e-24 122.0
23 TraesCS1B01G232900 chr6B 77.379 1030 139 48 2659 3621 162565070 162566072 5.510000e-145 525.0
24 TraesCS1B01G232900 chr6B 75.096 522 102 18 3602 4099 162565396 162564879 1.050000e-52 219.0
25 TraesCS1B01G232900 chr6B 88.321 137 16 0 3954 4090 669538486 669538350 1.380000e-36 165.0
26 TraesCS1B01G232900 chr6B 88.722 133 15 0 3959 4091 561008417 561008549 4.980000e-36 163.0
27 TraesCS1B01G232900 chr4D 86.713 143 16 2 1001 1143 509663214 509663353 8.330000e-34 156.0
28 TraesCS1B01G232900 chr3D 81.553 206 20 12 3378 3571 20808677 20808876 3.000000e-33 154.0
29 TraesCS1B01G232900 chr3D 84.000 100 14 2 3479 3577 109550297 109550199 1.840000e-15 95.3
30 TraesCS1B01G232900 chr2B 87.313 134 17 0 3958 4091 799599100 799599233 3.000000e-33 154.0
31 TraesCS1B01G232900 chr5A 84.722 144 16 3 1001 1141 698507356 698507496 8.390000e-29 139.0
32 TraesCS1B01G232900 chr6D 84.058 138 22 0 3953 4090 46457342 46457479 3.910000e-27 134.0
33 TraesCS1B01G232900 chr4B 89.623 106 9 2 1037 1141 657176374 657176270 3.910000e-27 134.0
34 TraesCS1B01G232900 chr7D 84.328 134 21 0 3958 4091 602852079 602851946 1.400000e-26 132.0
35 TraesCS1B01G232900 chr7D 84.000 100 14 2 3479 3577 620139231 620139133 1.840000e-15 95.3
36 TraesCS1B01G232900 chr5D 89.247 93 4 3 3379 3470 98733682 98733595 1.830000e-20 111.0
37 TraesCS1B01G232900 chr5D 88.298 94 5 4 3378 3470 563679186 563679098 2.370000e-19 108.0
38 TraesCS1B01G232900 chr5D 100.000 29 0 0 3493 3521 563679553 563679525 3.000000e-03 54.7
39 TraesCS1B01G232900 chr6A 80.808 99 13 4 2357 2452 464184163 464184258 8.640000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G232900 chr1B 418672149 418678358 6209 True 11468.0 11468 100.000 1 6210 1 chr1B.!!$R1 6209
1 TraesCS1B01G232900 chr1D 308585207 308589683 4476 True 3286.5 3411 93.392 1 6210 2 chr1D.!!$R2 6209
2 TraesCS1B01G232900 chr1A 388159685 388164291 4606 True 1328.4 3282 91.782 2 6210 5 chr1A.!!$R1 6208
3 TraesCS1B01G232900 chr7A 26787200 26787837 637 True 617.0 617 84.424 2882 3512 1 chr7A.!!$R1 630
4 TraesCS1B01G232900 chr7A 29029247 29029885 638 True 592.0 592 83.670 2882 3512 1 chr7A.!!$R2 630
5 TraesCS1B01G232900 chr7A 158192913 158193511 598 True 448.0 448 80.515 2897 3508 1 chr7A.!!$R4 611
6 TraesCS1B01G232900 chr7B 526712474 526713479 1005 False 549.0 549 77.595 2647 3621 1 chr7B.!!$F1 974
7 TraesCS1B01G232900 chr7B 683472059 683472691 632 True 374.0 374 78.030 2857 3497 1 chr7B.!!$R2 640
8 TraesCS1B01G232900 chr7B 526712304 526712813 509 True 202.0 202 74.708 3602 4090 1 chr7B.!!$R1 488
9 TraesCS1B01G232900 chr5B 372239749 372240749 1000 True 536.0 536 77.561 2662 3621 1 chr5B.!!$R1 959
10 TraesCS1B01G232900 chr5B 372240425 372240935 510 False 204.0 204 74.806 3602 4091 1 chr5B.!!$F1 489
11 TraesCS1B01G232900 chr2A 103573996 103575150 1154 True 328.0 534 77.656 2667 3751 2 chr2A.!!$R1 1084
12 TraesCS1B01G232900 chr6B 162565070 162566072 1002 False 525.0 525 77.379 2659 3621 1 chr6B.!!$F1 962
13 TraesCS1B01G232900 chr6B 162564879 162565396 517 True 219.0 219 75.096 3602 4099 1 chr6B.!!$R1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 444 0.531200 CGTACCACAGGAACCTCTCC 59.469 60.0 0.00 0.0 45.81 3.71 F
1371 1527 0.250901 TTCAGGGTGCTTTCCTCTGC 60.251 55.0 0.00 0.0 31.06 4.26 F
1521 1703 0.034089 CTTCCATTCCCACTCCCACC 60.034 60.0 0.00 0.0 0.00 4.61 F
1530 1712 0.114168 CCACTCCCACCCCAAATTCA 59.886 55.0 0.00 0.0 0.00 2.57 F
2561 2747 0.032267 GTAGAGGTAGGATGTGCGGC 59.968 60.0 0.00 0.0 0.00 6.53 F
2855 3056 0.027194 CAATGCAGCCAGAATCGTCG 59.973 55.0 0.00 0.0 0.00 5.12 F
3796 4094 0.180171 ATCAAATCCCATCGTCCGCA 59.820 50.0 0.00 0.0 0.00 5.69 F
4004 4321 0.249953 TGCATGCCAAAGCCAAGTTG 60.250 50.0 16.68 0.0 38.69 3.16 F
5071 5388 0.908198 ATCTGTTCCTGCCAGAGACC 59.092 55.0 0.00 0.0 41.91 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1693 0.114168 TGAATTTGGGGTGGGAGTGG 59.886 55.0 0.00 0.0 0.00 4.00 R
2542 2728 0.032267 GCCGCACATCCTACCTCTAC 59.968 60.0 0.00 0.0 0.00 2.59 R
2548 2734 0.177141 TAACAGGCCGCACATCCTAC 59.823 55.0 0.00 0.0 0.00 3.18 R
2637 2823 0.392998 ATGACAGCGGGCCTTTAGTG 60.393 55.0 0.84 0.0 0.00 2.74 R
3777 4075 0.180171 TGCGGACGATGGGATTTGAT 59.820 50.0 0.00 0.0 0.00 2.57 R
4825 5142 0.175302 CAAAGCCTGCCACAAACACA 59.825 50.0 0.00 0.0 0.00 3.72 R
4858 5175 0.179097 GGACGAGGAATGTGAGAGGC 60.179 60.0 0.00 0.0 0.00 4.70 R
5098 5415 0.548682 AATGCCTCCTCCAGACCTGT 60.549 55.0 0.00 0.0 0.00 4.00 R
6005 6343 2.834549 CTGATCTCCAGGGTTGTACTGT 59.165 50.0 0.00 0.0 39.23 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
430 444 0.531200 CGTACCACAGGAACCTCTCC 59.469 60.000 0.00 0.00 45.81 3.71
595 609 4.735132 GCCACGAGTAGCGGCACA 62.735 66.667 1.45 0.00 46.94 4.57
759 829 2.435586 CTCAAGTGGGCCTGCTCG 60.436 66.667 4.53 0.00 0.00 5.03
786 857 0.958091 TCCACCCGCAACAAAATCAG 59.042 50.000 0.00 0.00 0.00 2.90
805 915 2.270874 GAATCCACAGGGCCACCGAT 62.271 60.000 6.18 0.00 43.47 4.18
912 1027 1.606668 GCAATCCATCCGCCGATAAAA 59.393 47.619 0.00 0.00 0.00 1.52
1023 1139 2.838225 ATAGGGGCGTCCGTGGAG 60.838 66.667 12.39 0.00 41.52 3.86
1168 1285 6.345298 CCCATCTTCTTCCTTCTTTCTAGAC 58.655 44.000 0.00 0.00 0.00 2.59
1169 1286 6.156083 CCCATCTTCTTCCTTCTTTCTAGACT 59.844 42.308 0.00 0.00 0.00 3.24
1170 1287 7.343316 CCCATCTTCTTCCTTCTTTCTAGACTA 59.657 40.741 0.00 0.00 0.00 2.59
1171 1288 8.413229 CCATCTTCTTCCTTCTTTCTAGACTAG 58.587 40.741 2.81 2.81 0.00 2.57
1172 1289 9.184523 CATCTTCTTCCTTCTTTCTAGACTAGA 57.815 37.037 8.17 8.17 0.00 2.43
1173 1290 8.801882 TCTTCTTCCTTCTTTCTAGACTAGAG 57.198 38.462 11.94 2.73 35.96 2.43
1174 1291 8.387813 TCTTCTTCCTTCTTTCTAGACTAGAGT 58.612 37.037 11.94 0.00 35.96 3.24
1175 1292 9.675464 CTTCTTCCTTCTTTCTAGACTAGAGTA 57.325 37.037 11.94 4.63 35.96 2.59
1176 1293 9.452287 TTCTTCCTTCTTTCTAGACTAGAGTAC 57.548 37.037 11.94 0.00 35.96 2.73
1177 1294 8.828751 TCTTCCTTCTTTCTAGACTAGAGTACT 58.171 37.037 11.94 0.00 35.96 2.73
1222 1340 4.509600 GCTCAACGGAAAGGAATATGAGAG 59.490 45.833 4.20 0.00 35.91 3.20
1287 1438 1.993956 TGGCTTACTTGTGGTGCATT 58.006 45.000 0.00 0.00 0.00 3.56
1288 1439 3.147553 TGGCTTACTTGTGGTGCATTA 57.852 42.857 0.00 0.00 0.00 1.90
1344 1495 5.253330 TCTCTTCCATTATTGGGACACAAC 58.747 41.667 0.00 0.00 42.94 3.32
1345 1496 5.014123 TCTCTTCCATTATTGGGACACAACT 59.986 40.000 0.00 0.00 42.94 3.16
1347 1498 4.649267 TCCATTATTGGGACACAACTGA 57.351 40.909 0.00 0.00 42.94 3.41
1371 1527 0.250901 TTCAGGGTGCTTTCCTCTGC 60.251 55.000 0.00 0.00 31.06 4.26
1387 1543 4.042062 TCCTCTGCTCCATTTTTCTTCAGA 59.958 41.667 0.00 0.00 0.00 3.27
1465 1646 0.819582 GTTCCATCATTGGGCAGGTG 59.180 55.000 0.00 0.00 43.81 4.00
1489 1671 5.450376 ACATTACGCGATGAACTTAGTTG 57.550 39.130 15.93 0.64 0.00 3.16
1493 1675 1.459209 CGCGATGAACTTAGTTGTGCA 59.541 47.619 0.00 0.00 0.00 4.57
1512 1694 4.184079 GCATATGCATTCTTCCATTCCC 57.816 45.455 22.84 0.00 41.59 3.97
1513 1695 3.575256 GCATATGCATTCTTCCATTCCCA 59.425 43.478 22.84 0.00 41.59 4.37
1514 1696 4.560108 GCATATGCATTCTTCCATTCCCAC 60.560 45.833 22.84 0.00 41.59 4.61
1515 1697 2.905415 TGCATTCTTCCATTCCCACT 57.095 45.000 0.00 0.00 0.00 4.00
1516 1698 2.726821 TGCATTCTTCCATTCCCACTC 58.273 47.619 0.00 0.00 0.00 3.51
1517 1699 2.027385 GCATTCTTCCATTCCCACTCC 58.973 52.381 0.00 0.00 0.00 3.85
1518 1700 2.659428 CATTCTTCCATTCCCACTCCC 58.341 52.381 0.00 0.00 0.00 4.30
1519 1701 1.753903 TTCTTCCATTCCCACTCCCA 58.246 50.000 0.00 0.00 0.00 4.37
1520 1702 0.991920 TCTTCCATTCCCACTCCCAC 59.008 55.000 0.00 0.00 0.00 4.61
1521 1703 0.034089 CTTCCATTCCCACTCCCACC 60.034 60.000 0.00 0.00 0.00 4.61
1522 1704 1.506028 TTCCATTCCCACTCCCACCC 61.506 60.000 0.00 0.00 0.00 4.61
1523 1705 2.683475 CATTCCCACTCCCACCCC 59.317 66.667 0.00 0.00 0.00 4.95
1530 1712 0.114168 CCACTCCCACCCCAAATTCA 59.886 55.000 0.00 0.00 0.00 2.57
1546 1728 5.176223 CCAAATTCACTGAAACTGAATGCAC 59.824 40.000 0.00 0.00 38.19 4.57
1558 1740 0.237235 GAATGCACGCGGTTCTGAAA 59.763 50.000 12.47 0.00 0.00 2.69
1560 1742 0.447801 ATGCACGCGGTTCTGAAATC 59.552 50.000 12.47 0.00 0.00 2.17
1775 1957 3.566853 CGCGCGTCCATGCTGATT 61.567 61.111 24.19 0.00 0.00 2.57
1778 1960 2.410469 GCGTCCATGCTGATTGGC 59.590 61.111 0.00 0.00 34.06 4.52
1802 1984 2.184322 GTCTTCATCGCCGGCTCA 59.816 61.111 26.68 11.65 0.00 4.26
1836 2018 2.668212 CCGTGAACGTGCCCATGT 60.668 61.111 1.75 0.00 37.74 3.21
1859 2041 0.909610 TCCTCAACCGGATCCTGCTT 60.910 55.000 9.46 0.00 0.00 3.91
2048 2232 1.899437 TTCCGGACCCTGCATCAGTC 61.899 60.000 1.83 0.00 0.00 3.51
2072 2256 2.113860 AATCTTGTGCGGCTGTATGT 57.886 45.000 0.00 0.00 0.00 2.29
2196 2381 9.891828 TGTTTACAATGACAATTTACATGTCTC 57.108 29.630 0.00 0.00 45.81 3.36
2197 2382 9.341899 GTTTACAATGACAATTTACATGTCTCC 57.658 33.333 0.00 0.00 45.81 3.71
2213 2398 2.077803 TCTCCCTCCCAAATCCCAAAA 58.922 47.619 0.00 0.00 0.00 2.44
2240 2426 3.469008 TGCATTGACTACCCGATAAGG 57.531 47.619 0.00 0.00 40.63 2.69
2269 2455 3.475575 TCTTGTAGCAAGTGCATGTGAA 58.524 40.909 6.00 0.00 45.16 3.18
2274 2460 3.360249 AGCAAGTGCATGTGAAGTTTC 57.640 42.857 6.00 0.00 45.16 2.78
2277 2463 3.243168 GCAAGTGCATGTGAAGTTTCTGA 60.243 43.478 0.00 0.00 41.59 3.27
2315 2501 4.821805 TCTCCAAAAGGACATTGTGAAGTC 59.178 41.667 0.00 0.00 0.00 3.01
2346 2532 9.444600 AAATACCTTACTGTGGTTACTGTTATG 57.555 33.333 0.00 0.00 39.36 1.90
2347 2533 6.429521 ACCTTACTGTGGTTACTGTTATGT 57.570 37.500 0.00 0.00 39.36 2.29
2348 2534 6.834107 ACCTTACTGTGGTTACTGTTATGTT 58.166 36.000 0.00 0.00 39.36 2.71
2349 2535 7.284820 ACCTTACTGTGGTTACTGTTATGTTT 58.715 34.615 0.00 0.00 39.36 2.83
2350 2536 8.431222 ACCTTACTGTGGTTACTGTTATGTTTA 58.569 33.333 0.00 0.00 39.36 2.01
2351 2537 9.444600 CCTTACTGTGGTTACTGTTATGTTTAT 57.555 33.333 0.00 0.00 39.36 1.40
2371 2557 9.743057 TGTTTATTTTTGAGTCAATTACACCAG 57.257 29.630 6.36 0.00 0.00 4.00
2372 2558 9.744468 GTTTATTTTTGAGTCAATTACACCAGT 57.256 29.630 6.36 0.00 0.00 4.00
2373 2559 9.743057 TTTATTTTTGAGTCAATTACACCAGTG 57.257 29.630 6.36 0.00 0.00 3.66
2374 2560 5.766150 TTTTGAGTCAATTACACCAGTGG 57.234 39.130 7.91 7.91 34.19 4.00
2375 2561 4.431416 TTGAGTCAATTACACCAGTGGT 57.569 40.909 9.70 9.70 35.62 4.16
2387 2573 3.290948 ACCAGTGGTGCTAAAACTTGA 57.709 42.857 15.86 0.00 32.98 3.02
2388 2574 2.949644 ACCAGTGGTGCTAAAACTTGAC 59.050 45.455 15.86 0.00 32.98 3.18
2389 2575 2.032030 CCAGTGGTGCTAAAACTTGACG 60.032 50.000 0.00 0.00 0.00 4.35
2390 2576 1.602377 AGTGGTGCTAAAACTTGACGC 59.398 47.619 0.00 0.00 0.00 5.19
2391 2577 0.584396 TGGTGCTAAAACTTGACGCG 59.416 50.000 3.53 3.53 0.00 6.01
2392 2578 0.863144 GGTGCTAAAACTTGACGCGA 59.137 50.000 15.93 0.00 0.00 5.87
2393 2579 1.262151 GGTGCTAAAACTTGACGCGAA 59.738 47.619 15.93 0.00 0.00 4.70
2394 2580 2.286536 GGTGCTAAAACTTGACGCGAAA 60.287 45.455 15.93 5.90 0.00 3.46
2395 2581 3.356145 GTGCTAAAACTTGACGCGAAAA 58.644 40.909 15.93 5.47 0.00 2.29
2396 2582 3.787105 GTGCTAAAACTTGACGCGAAAAA 59.213 39.130 15.93 2.55 0.00 1.94
2397 2583 4.439776 GTGCTAAAACTTGACGCGAAAAAT 59.560 37.500 15.93 0.00 0.00 1.82
2398 2584 4.673311 TGCTAAAACTTGACGCGAAAAATC 59.327 37.500 15.93 0.00 0.00 2.17
2399 2585 4.673311 GCTAAAACTTGACGCGAAAAATCA 59.327 37.500 15.93 1.67 0.00 2.57
2400 2586 5.386019 GCTAAAACTTGACGCGAAAAATCAC 60.386 40.000 15.93 0.00 0.00 3.06
2401 2587 3.963383 AACTTGACGCGAAAAATCACT 57.037 38.095 15.93 0.00 0.00 3.41
2402 2588 3.963383 ACTTGACGCGAAAAATCACTT 57.037 38.095 15.93 0.00 0.00 3.16
2403 2589 4.287238 ACTTGACGCGAAAAATCACTTT 57.713 36.364 15.93 0.00 0.00 2.66
2404 2590 5.412526 ACTTGACGCGAAAAATCACTTTA 57.587 34.783 15.93 0.00 0.00 1.85
2405 2591 5.440685 ACTTGACGCGAAAAATCACTTTAG 58.559 37.500 15.93 2.22 0.00 1.85
2406 2592 5.007332 ACTTGACGCGAAAAATCACTTTAGT 59.993 36.000 15.93 2.90 0.00 2.24
2407 2593 6.201425 ACTTGACGCGAAAAATCACTTTAGTA 59.799 34.615 15.93 0.00 0.00 1.82
2408 2594 5.908106 TGACGCGAAAAATCACTTTAGTAC 58.092 37.500 15.93 0.00 0.00 2.73
2409 2595 5.107375 TGACGCGAAAAATCACTTTAGTACC 60.107 40.000 15.93 0.00 0.00 3.34
2410 2596 4.751098 ACGCGAAAAATCACTTTAGTACCA 59.249 37.500 15.93 0.00 0.00 3.25
2411 2597 5.236911 ACGCGAAAAATCACTTTAGTACCAA 59.763 36.000 15.93 0.00 0.00 3.67
2412 2598 6.137415 CGCGAAAAATCACTTTAGTACCAAA 58.863 36.000 0.00 0.00 0.00 3.28
2413 2599 6.633634 CGCGAAAAATCACTTTAGTACCAAAA 59.366 34.615 0.00 0.00 0.00 2.44
2414 2600 7.356962 CGCGAAAAATCACTTTAGTACCAAAAC 60.357 37.037 0.00 0.00 0.00 2.43
2415 2601 7.646526 GCGAAAAATCACTTTAGTACCAAAACT 59.353 33.333 0.00 0.00 0.00 2.66
2416 2602 9.511144 CGAAAAATCACTTTAGTACCAAAACTT 57.489 29.630 0.00 0.00 0.00 2.66
2421 2607 7.443259 TCACTTTAGTACCAAAACTTATGGC 57.557 36.000 0.00 0.00 41.89 4.40
2422 2608 6.999272 TCACTTTAGTACCAAAACTTATGGCA 59.001 34.615 0.00 0.00 41.89 4.92
2423 2609 7.668052 TCACTTTAGTACCAAAACTTATGGCAT 59.332 33.333 4.88 4.88 41.89 4.40
2424 2610 8.952278 CACTTTAGTACCAAAACTTATGGCATA 58.048 33.333 2.32 2.32 41.89 3.14
2425 2611 8.953313 ACTTTAGTACCAAAACTTATGGCATAC 58.047 33.333 6.72 0.00 41.89 2.39
2426 2612 8.865420 TTTAGTACCAAAACTTATGGCATACA 57.135 30.769 6.72 0.00 41.89 2.29
2427 2613 8.865420 TTAGTACCAAAACTTATGGCATACAA 57.135 30.769 6.72 0.00 41.89 2.41
2428 2614 7.954666 AGTACCAAAACTTATGGCATACAAT 57.045 32.000 6.72 0.00 41.89 2.71
2429 2615 7.771183 AGTACCAAAACTTATGGCATACAATG 58.229 34.615 6.72 2.81 41.89 2.82
2430 2616 6.849085 ACCAAAACTTATGGCATACAATGA 57.151 33.333 6.72 0.00 41.89 2.57
2431 2617 7.238486 ACCAAAACTTATGGCATACAATGAA 57.762 32.000 6.72 0.00 41.89 2.57
2432 2618 7.096551 ACCAAAACTTATGGCATACAATGAAC 58.903 34.615 6.72 0.00 41.89 3.18
2433 2619 7.039082 ACCAAAACTTATGGCATACAATGAACT 60.039 33.333 6.72 0.00 41.89 3.01
2434 2620 8.465999 CCAAAACTTATGGCATACAATGAACTA 58.534 33.333 6.72 0.00 0.00 2.24
2435 2621 9.507280 CAAAACTTATGGCATACAATGAACTAG 57.493 33.333 6.72 1.21 0.00 2.57
2436 2622 8.807948 AAACTTATGGCATACAATGAACTAGT 57.192 30.769 6.72 1.86 0.00 2.57
2437 2623 7.792374 ACTTATGGCATACAATGAACTAGTG 57.208 36.000 6.72 0.00 0.00 2.74
2438 2624 6.260936 ACTTATGGCATACAATGAACTAGTGC 59.739 38.462 6.72 0.00 0.00 4.40
2439 2625 4.220693 TGGCATACAATGAACTAGTGCT 57.779 40.909 1.64 0.00 0.00 4.40
2440 2626 5.351948 TGGCATACAATGAACTAGTGCTA 57.648 39.130 1.64 0.00 0.00 3.49
2441 2627 5.739959 TGGCATACAATGAACTAGTGCTAA 58.260 37.500 1.64 0.00 0.00 3.09
2442 2628 6.176896 TGGCATACAATGAACTAGTGCTAAA 58.823 36.000 1.64 0.00 0.00 1.85
2443 2629 6.657117 TGGCATACAATGAACTAGTGCTAAAA 59.343 34.615 1.64 0.00 0.00 1.52
2444 2630 6.967199 GGCATACAATGAACTAGTGCTAAAAC 59.033 38.462 1.64 0.00 0.00 2.43
2445 2631 7.148239 GGCATACAATGAACTAGTGCTAAAACT 60.148 37.037 1.64 0.00 0.00 2.66
2446 2632 8.237267 GCATACAATGAACTAGTGCTAAAACTT 58.763 33.333 1.64 0.00 0.00 2.66
2447 2633 9.546909 CATACAATGAACTAGTGCTAAAACTTG 57.453 33.333 1.64 0.02 0.00 3.16
2448 2634 6.970484 ACAATGAACTAGTGCTAAAACTTGG 58.030 36.000 1.64 0.00 0.00 3.61
2449 2635 5.629079 ATGAACTAGTGCTAAAACTTGGC 57.371 39.130 1.64 0.00 37.69 4.52
2450 2636 4.714632 TGAACTAGTGCTAAAACTTGGCT 58.285 39.130 1.64 0.00 38.08 4.75
2451 2637 5.130350 TGAACTAGTGCTAAAACTTGGCTT 58.870 37.500 1.64 0.00 38.08 4.35
2452 2638 5.238650 TGAACTAGTGCTAAAACTTGGCTTC 59.761 40.000 1.64 0.00 38.08 3.86
2453 2639 3.746492 ACTAGTGCTAAAACTTGGCTTCG 59.254 43.478 0.00 0.00 38.08 3.79
2454 2640 1.880027 AGTGCTAAAACTTGGCTTCGG 59.120 47.619 0.00 0.00 38.08 4.30
2455 2641 0.596082 TGCTAAAACTTGGCTTCGGC 59.404 50.000 0.00 0.00 38.08 5.54
2456 2642 0.454452 GCTAAAACTTGGCTTCGGCG 60.454 55.000 0.00 0.00 42.91 6.46
2457 2643 0.872388 CTAAAACTTGGCTTCGGCGT 59.128 50.000 6.85 0.00 42.91 5.68
2458 2644 0.589223 TAAAACTTGGCTTCGGCGTG 59.411 50.000 6.85 2.20 42.91 5.34
2459 2645 2.677573 AAAACTTGGCTTCGGCGTGC 62.678 55.000 6.85 12.84 42.91 5.34
2460 2646 4.927782 ACTTGGCTTCGGCGTGCA 62.928 61.111 23.08 10.97 42.91 4.57
2461 2647 3.434319 CTTGGCTTCGGCGTGCAT 61.434 61.111 23.08 0.00 42.91 3.96
2462 2648 2.046796 TTGGCTTCGGCGTGCATA 60.047 55.556 23.08 12.46 42.91 3.14
2463 2649 1.439353 CTTGGCTTCGGCGTGCATAT 61.439 55.000 23.08 0.00 42.91 1.78
2464 2650 1.713937 TTGGCTTCGGCGTGCATATG 61.714 55.000 23.08 0.00 42.91 1.78
2465 2651 2.180204 GGCTTCGGCGTGCATATGT 61.180 57.895 23.08 0.00 42.91 2.29
2466 2652 1.010797 GCTTCGGCGTGCATATGTG 60.011 57.895 18.79 0.00 0.00 3.21
2487 2673 8.915871 ATGTGCAAATCATATTTGTTACTGAC 57.084 30.769 12.53 3.55 0.00 3.51
2488 2674 7.880105 TGTGCAAATCATATTTGTTACTGACA 58.120 30.769 12.53 5.41 36.19 3.58
2489 2675 8.522003 TGTGCAAATCATATTTGTTACTGACAT 58.478 29.630 12.53 0.00 38.26 3.06
2490 2676 8.800972 GTGCAAATCATATTTGTTACTGACATG 58.199 33.333 12.53 0.00 38.26 3.21
2491 2677 7.975058 TGCAAATCATATTTGTTACTGACATGG 59.025 33.333 12.53 0.00 38.26 3.66
2492 2678 7.975616 GCAAATCATATTTGTTACTGACATGGT 59.024 33.333 12.53 0.00 38.26 3.55
2493 2679 9.292846 CAAATCATATTTGTTACTGACATGGTG 57.707 33.333 0.00 0.00 38.26 4.17
2494 2680 6.435430 TCATATTTGTTACTGACATGGTGC 57.565 37.500 0.00 0.00 38.26 5.01
2495 2681 6.179756 TCATATTTGTTACTGACATGGTGCT 58.820 36.000 0.00 0.00 38.26 4.40
2496 2682 4.771590 ATTTGTTACTGACATGGTGCTG 57.228 40.909 0.00 0.00 38.26 4.41
2497 2683 3.483808 TTGTTACTGACATGGTGCTGA 57.516 42.857 0.00 0.00 38.26 4.26
2498 2684 3.701205 TGTTACTGACATGGTGCTGAT 57.299 42.857 0.00 0.00 32.00 2.90
2499 2685 4.019792 TGTTACTGACATGGTGCTGATT 57.980 40.909 0.00 0.00 32.00 2.57
2500 2686 5.159273 TGTTACTGACATGGTGCTGATTA 57.841 39.130 0.00 0.00 32.00 1.75
2501 2687 5.178061 TGTTACTGACATGGTGCTGATTAG 58.822 41.667 0.00 0.00 32.00 1.73
2502 2688 3.272574 ACTGACATGGTGCTGATTAGG 57.727 47.619 0.00 0.00 0.00 2.69
2503 2689 1.945394 CTGACATGGTGCTGATTAGGC 59.055 52.381 0.00 0.00 0.00 3.93
2504 2690 1.281577 TGACATGGTGCTGATTAGGCA 59.718 47.619 0.00 0.00 37.36 4.75
2505 2691 2.092267 TGACATGGTGCTGATTAGGCAT 60.092 45.455 0.00 0.00 41.86 4.40
2506 2692 2.292569 GACATGGTGCTGATTAGGCATG 59.707 50.000 0.00 0.00 41.86 4.06
2507 2693 1.000607 CATGGTGCTGATTAGGCATGC 60.001 52.381 9.90 9.90 41.86 4.06
2508 2694 0.752743 TGGTGCTGATTAGGCATGCC 60.753 55.000 30.12 30.12 41.86 4.40
2509 2695 1.650912 GTGCTGATTAGGCATGCCG 59.349 57.895 30.50 16.42 41.86 5.69
2510 2696 2.188829 TGCTGATTAGGCATGCCGC 61.189 57.895 30.50 25.23 41.95 6.53
2511 2697 2.188829 GCTGATTAGGCATGCCGCA 61.189 57.895 30.50 23.61 45.17 5.69
2512 2698 1.521450 GCTGATTAGGCATGCCGCAT 61.521 55.000 30.50 24.91 45.17 4.73
2513 2699 0.240145 CTGATTAGGCATGCCGCATG 59.760 55.000 30.50 26.13 45.17 4.06
2514 2700 0.179023 TGATTAGGCATGCCGCATGA 60.179 50.000 32.83 17.64 43.81 3.07
2519 2705 3.112842 GCATGCCGCATGACATGA 58.887 55.556 32.83 0.00 45.23 3.07
2520 2706 1.008881 GCATGCCGCATGACATGAG 60.009 57.895 32.83 15.64 45.23 2.90
2524 2710 2.903855 CCGCATGACATGAGGCCC 60.904 66.667 23.00 2.92 43.20 5.80
2525 2711 3.274586 CGCATGACATGAGGCCCG 61.275 66.667 19.76 8.65 0.00 6.13
2526 2712 3.589881 GCATGACATGAGGCCCGC 61.590 66.667 19.76 0.00 0.00 6.13
2527 2713 2.191375 CATGACATGAGGCCCGCT 59.809 61.111 10.03 0.00 0.00 5.52
2528 2714 2.184830 CATGACATGAGGCCCGCTG 61.185 63.158 10.03 0.00 0.00 5.18
2529 2715 2.673200 ATGACATGAGGCCCGCTGT 61.673 57.895 0.00 0.00 0.00 4.40
2530 2716 2.512515 GACATGAGGCCCGCTGTC 60.513 66.667 11.95 11.95 0.00 3.51
2531 2717 3.315142 GACATGAGGCCCGCTGTCA 62.315 63.158 19.11 8.85 38.28 3.58
2532 2718 2.513204 CATGAGGCCCGCTGTCAG 60.513 66.667 0.00 0.00 0.00 3.51
2533 2719 2.685017 ATGAGGCCCGCTGTCAGA 60.685 61.111 3.32 0.00 0.00 3.27
2534 2720 3.023949 ATGAGGCCCGCTGTCAGAC 62.024 63.158 3.32 0.00 0.00 3.51
2535 2721 3.695606 GAGGCCCGCTGTCAGACA 61.696 66.667 3.32 2.48 0.00 3.41
2536 2722 3.941657 GAGGCCCGCTGTCAGACAC 62.942 68.421 3.32 0.00 0.00 3.67
2537 2723 4.008933 GGCCCGCTGTCAGACACT 62.009 66.667 3.32 0.00 0.00 3.55
2538 2724 2.646175 GGCCCGCTGTCAGACACTA 61.646 63.158 3.32 0.00 0.00 2.74
2539 2725 1.292223 GCCCGCTGTCAGACACTAA 59.708 57.895 3.32 0.00 0.00 2.24
2540 2726 0.320421 GCCCGCTGTCAGACACTAAA 60.320 55.000 3.32 0.00 0.00 1.85
2541 2727 1.676014 GCCCGCTGTCAGACACTAAAT 60.676 52.381 3.32 0.00 0.00 1.40
2542 2728 2.002586 CCCGCTGTCAGACACTAAATG 58.997 52.381 3.32 0.00 0.00 2.32
2544 2730 3.368013 CCCGCTGTCAGACACTAAATGTA 60.368 47.826 3.32 0.00 43.56 2.29
2545 2731 3.859961 CCGCTGTCAGACACTAAATGTAG 59.140 47.826 3.32 0.00 43.56 2.74
2546 2732 4.380550 CCGCTGTCAGACACTAAATGTAGA 60.381 45.833 3.32 0.00 43.56 2.59
2547 2733 4.795795 CGCTGTCAGACACTAAATGTAGAG 59.204 45.833 3.32 0.00 43.56 2.43
2548 2734 5.105752 GCTGTCAGACACTAAATGTAGAGG 58.894 45.833 3.32 0.00 43.56 3.69
2549 2735 5.336849 GCTGTCAGACACTAAATGTAGAGGT 60.337 44.000 3.32 0.00 43.56 3.85
2550 2736 6.127703 GCTGTCAGACACTAAATGTAGAGGTA 60.128 42.308 3.32 0.00 43.56 3.08
2551 2737 7.392494 TGTCAGACACTAAATGTAGAGGTAG 57.608 40.000 0.00 0.00 43.56 3.18
2552 2738 6.377429 TGTCAGACACTAAATGTAGAGGTAGG 59.623 42.308 0.00 0.00 43.56 3.18
2553 2739 6.602406 GTCAGACACTAAATGTAGAGGTAGGA 59.398 42.308 0.00 0.00 43.56 2.94
2554 2740 7.285858 GTCAGACACTAAATGTAGAGGTAGGAT 59.714 40.741 0.00 0.00 43.56 3.24
2555 2741 7.285629 TCAGACACTAAATGTAGAGGTAGGATG 59.714 40.741 0.00 0.00 43.56 3.51
2556 2742 7.068839 CAGACACTAAATGTAGAGGTAGGATGT 59.931 40.741 0.00 0.00 43.56 3.06
2557 2743 7.068839 AGACACTAAATGTAGAGGTAGGATGTG 59.931 40.741 0.00 0.00 43.56 3.21
2558 2744 5.986135 CACTAAATGTAGAGGTAGGATGTGC 59.014 44.000 0.00 0.00 0.00 4.57
2559 2745 3.735237 AATGTAGAGGTAGGATGTGCG 57.265 47.619 0.00 0.00 0.00 5.34
2560 2746 1.399714 TGTAGAGGTAGGATGTGCGG 58.600 55.000 0.00 0.00 0.00 5.69
2561 2747 0.032267 GTAGAGGTAGGATGTGCGGC 59.968 60.000 0.00 0.00 0.00 6.53
2562 2748 1.113517 TAGAGGTAGGATGTGCGGCC 61.114 60.000 0.00 0.00 0.00 6.13
2563 2749 2.365635 AGGTAGGATGTGCGGCCT 60.366 61.111 0.00 0.00 38.31 5.19
2564 2750 2.203070 GGTAGGATGTGCGGCCTG 60.203 66.667 0.00 0.00 35.73 4.85
2565 2751 2.584608 GTAGGATGTGCGGCCTGT 59.415 61.111 0.00 0.00 35.73 4.00
2566 2752 1.078426 GTAGGATGTGCGGCCTGTT 60.078 57.895 0.00 0.00 35.73 3.16
2567 2753 0.177141 GTAGGATGTGCGGCCTGTTA 59.823 55.000 0.00 0.00 35.73 2.41
2568 2754 1.128200 TAGGATGTGCGGCCTGTTAT 58.872 50.000 0.00 0.00 35.73 1.89
2569 2755 0.255890 AGGATGTGCGGCCTGTTATT 59.744 50.000 0.00 0.00 32.06 1.40
2570 2756 1.102978 GGATGTGCGGCCTGTTATTT 58.897 50.000 0.00 0.00 0.00 1.40
2571 2757 1.476488 GGATGTGCGGCCTGTTATTTT 59.524 47.619 0.00 0.00 0.00 1.82
2572 2758 2.529151 GATGTGCGGCCTGTTATTTTG 58.471 47.619 0.00 0.00 0.00 2.44
2573 2759 1.323412 TGTGCGGCCTGTTATTTTGT 58.677 45.000 0.00 0.00 0.00 2.83
2574 2760 1.000827 TGTGCGGCCTGTTATTTTGTG 60.001 47.619 0.00 0.00 0.00 3.33
2575 2761 0.600557 TGCGGCCTGTTATTTTGTGG 59.399 50.000 0.00 0.00 0.00 4.17
2576 2762 0.735978 GCGGCCTGTTATTTTGTGGC 60.736 55.000 0.00 0.00 42.56 5.01
2577 2763 0.600557 CGGCCTGTTATTTTGTGGCA 59.399 50.000 0.00 0.00 44.85 4.92
2578 2764 1.204467 CGGCCTGTTATTTTGTGGCAT 59.796 47.619 0.00 0.00 44.85 4.40
2579 2765 2.353605 CGGCCTGTTATTTTGTGGCATT 60.354 45.455 0.00 0.00 44.85 3.56
2580 2766 3.673902 GGCCTGTTATTTTGTGGCATTT 58.326 40.909 0.00 0.00 44.85 2.32
2581 2767 3.436359 GGCCTGTTATTTTGTGGCATTTG 59.564 43.478 0.00 0.00 44.85 2.32
2582 2768 3.120234 GCCTGTTATTTTGTGGCATTTGC 60.120 43.478 0.00 0.00 42.79 3.68
2583 2769 4.063689 CCTGTTATTTTGTGGCATTTGCA 58.936 39.130 4.74 0.00 44.36 4.08
2584 2770 4.696402 CCTGTTATTTTGTGGCATTTGCAT 59.304 37.500 4.74 0.00 44.36 3.96
2585 2771 5.873712 CCTGTTATTTTGTGGCATTTGCATA 59.126 36.000 4.74 0.00 44.36 3.14
2586 2772 6.539464 CCTGTTATTTTGTGGCATTTGCATAT 59.461 34.615 4.74 0.00 44.36 1.78
2587 2773 7.304919 TGTTATTTTGTGGCATTTGCATATG 57.695 32.000 12.28 12.28 44.36 1.78
2588 2774 6.315642 TGTTATTTTGTGGCATTTGCATATGG 59.684 34.615 17.33 1.67 44.36 2.74
2589 2775 4.548451 TTTTGTGGCATTTGCATATGGA 57.452 36.364 17.33 0.00 44.36 3.41
2590 2776 3.523606 TTGTGGCATTTGCATATGGAC 57.476 42.857 17.33 3.28 44.36 4.02
2591 2777 2.454538 TGTGGCATTTGCATATGGACA 58.545 42.857 17.33 5.38 44.36 4.02
2592 2778 3.032459 TGTGGCATTTGCATATGGACAT 58.968 40.909 17.33 0.00 44.36 3.06
2593 2779 3.181474 TGTGGCATTTGCATATGGACATG 60.181 43.478 16.52 16.52 44.36 3.21
2594 2780 2.365941 TGGCATTTGCATATGGACATGG 59.634 45.455 20.66 6.87 44.36 3.66
2595 2781 2.366266 GGCATTTGCATATGGACATGGT 59.634 45.455 20.66 0.00 44.36 3.55
2596 2782 3.573538 GGCATTTGCATATGGACATGGTA 59.426 43.478 20.66 0.00 44.36 3.25
2597 2783 4.549458 GCATTTGCATATGGACATGGTAC 58.451 43.478 20.66 5.04 41.59 3.34
2598 2784 4.279169 GCATTTGCATATGGACATGGTACT 59.721 41.667 20.66 0.00 41.59 2.73
2599 2785 5.765176 CATTTGCATATGGACATGGTACTG 58.235 41.667 13.83 0.00 0.00 2.74
2600 2786 4.769345 TTGCATATGGACATGGTACTGA 57.231 40.909 4.56 0.00 0.00 3.41
2601 2787 4.980339 TGCATATGGACATGGTACTGAT 57.020 40.909 4.56 0.00 0.00 2.90
2602 2788 5.308976 TGCATATGGACATGGTACTGATT 57.691 39.130 4.56 0.00 0.00 2.57
2603 2789 6.432403 TGCATATGGACATGGTACTGATTA 57.568 37.500 4.56 0.00 0.00 1.75
2604 2790 6.466812 TGCATATGGACATGGTACTGATTAG 58.533 40.000 4.56 0.00 0.00 1.73
2605 2791 5.877012 GCATATGGACATGGTACTGATTAGG 59.123 44.000 4.56 0.00 0.00 2.69
2606 2792 3.838244 TGGACATGGTACTGATTAGGC 57.162 47.619 0.00 0.00 0.00 3.93
2607 2793 2.102420 TGGACATGGTACTGATTAGGCG 59.898 50.000 0.00 0.00 0.00 5.52
2608 2794 2.135933 GACATGGTACTGATTAGGCGC 58.864 52.381 0.00 0.00 0.00 6.53
2609 2795 1.139989 CATGGTACTGATTAGGCGCG 58.860 55.000 0.00 0.00 0.00 6.86
2610 2796 0.600255 ATGGTACTGATTAGGCGCGC 60.600 55.000 25.94 25.94 0.00 6.86
2611 2797 1.954651 GGTACTGATTAGGCGCGCC 60.955 63.158 42.34 42.34 0.00 6.53
2634 2820 4.783621 GCATGAGGCCCGCTGTCA 62.784 66.667 0.00 0.00 36.11 3.58
2635 2821 2.513204 CATGAGGCCCGCTGTCAG 60.513 66.667 0.00 0.00 0.00 3.51
2636 2822 2.685017 ATGAGGCCCGCTGTCAGA 60.685 61.111 3.32 0.00 0.00 3.27
2637 2823 3.023949 ATGAGGCCCGCTGTCAGAC 62.024 63.158 3.32 0.00 0.00 3.51
2638 2824 3.695606 GAGGCCCGCTGTCAGACA 61.696 66.667 3.32 2.48 0.00 3.41
2639 2825 3.941657 GAGGCCCGCTGTCAGACAC 62.942 68.421 3.32 0.00 0.00 3.67
2640 2826 4.008933 GGCCCGCTGTCAGACACT 62.009 66.667 3.32 0.00 0.00 3.55
2641 2827 2.646175 GGCCCGCTGTCAGACACTA 61.646 63.158 3.32 0.00 0.00 2.74
2642 2828 1.292223 GCCCGCTGTCAGACACTAA 59.708 57.895 3.32 0.00 0.00 2.24
2643 2829 0.320421 GCCCGCTGTCAGACACTAAA 60.320 55.000 3.32 0.00 0.00 1.85
2644 2830 1.714794 CCCGCTGTCAGACACTAAAG 58.285 55.000 3.32 0.00 0.00 1.85
2645 2831 1.673033 CCCGCTGTCAGACACTAAAGG 60.673 57.143 3.32 0.00 0.00 3.11
2649 2835 0.320374 TGTCAGACACTAAAGGCCCG 59.680 55.000 0.00 0.00 0.00 6.13
2654 2840 1.003718 ACACTAAAGGCCCGCTGTC 60.004 57.895 0.00 0.00 0.00 3.51
2656 2842 0.392998 CACTAAAGGCCCGCTGTCAT 60.393 55.000 0.00 0.00 0.00 3.06
2657 2843 1.134521 CACTAAAGGCCCGCTGTCATA 60.135 52.381 0.00 0.00 0.00 2.15
2660 2846 0.676782 AAAGGCCCGCTGTCATACAC 60.677 55.000 0.00 0.00 0.00 2.90
2679 2866 5.455056 ACACTAAATGTAGAGATAGGGCG 57.545 43.478 0.00 0.00 40.88 6.13
2682 2869 2.821991 AATGTAGAGATAGGGCGTGC 57.178 50.000 0.00 0.00 0.00 5.34
2683 2870 1.704641 ATGTAGAGATAGGGCGTGCA 58.295 50.000 0.00 0.00 0.00 4.57
2699 2886 2.676076 GTGCAGCCTGTTATTTTGTGG 58.324 47.619 0.00 0.00 0.00 4.17
2702 2889 3.386078 TGCAGCCTGTTATTTTGTGGAAA 59.614 39.130 0.00 0.00 0.00 3.13
2703 2890 4.141846 TGCAGCCTGTTATTTTGTGGAAAA 60.142 37.500 0.00 0.00 35.52 2.29
2705 2892 5.355596 CAGCCTGTTATTTTGTGGAAAACA 58.644 37.500 0.00 0.00 33.86 2.83
2747 2934 2.665165 TGAAAAGGCCACTGACACATT 58.335 42.857 5.01 0.00 0.00 2.71
2759 2947 3.513912 ACTGACACATTTCGGTCCATCTA 59.486 43.478 0.00 0.00 28.10 1.98
2765 2953 3.389329 ACATTTCGGTCCATCTATCAGCT 59.611 43.478 0.00 0.00 0.00 4.24
2766 2954 3.459232 TTTCGGTCCATCTATCAGCTG 57.541 47.619 7.63 7.63 0.00 4.24
2773 2974 5.136105 GGTCCATCTATCAGCTGGAAAATT 58.864 41.667 15.13 0.00 41.64 1.82
2779 2980 0.968405 TCAGCTGGAAAATTGTGGCC 59.032 50.000 15.13 0.00 0.00 5.36
2783 2984 1.748493 GCTGGAAAATTGTGGCCGATA 59.252 47.619 0.00 0.00 0.00 2.92
2804 3005 1.339929 GGTTTCAAACCCGCAATCTGT 59.660 47.619 8.27 0.00 46.12 3.41
2814 3015 3.741029 GCAATCTGTAGCGTGGAGA 57.259 52.632 0.00 0.00 0.00 3.71
2817 3018 1.478510 CAATCTGTAGCGTGGAGACCT 59.521 52.381 0.00 0.00 0.00 3.85
2818 3019 1.107114 ATCTGTAGCGTGGAGACCTG 58.893 55.000 0.00 0.00 0.00 4.00
2819 3020 0.251209 TCTGTAGCGTGGAGACCTGT 60.251 55.000 0.00 0.00 0.00 4.00
2820 3021 0.171455 CTGTAGCGTGGAGACCTGTC 59.829 60.000 0.00 0.00 0.00 3.51
2821 3022 0.538746 TGTAGCGTGGAGACCTGTCA 60.539 55.000 0.00 0.00 0.00 3.58
2822 3023 0.109226 GTAGCGTGGAGACCTGTCAC 60.109 60.000 0.00 0.00 0.00 3.67
2823 3024 0.538746 TAGCGTGGAGACCTGTCACA 60.539 55.000 0.00 0.00 0.00 3.58
2824 3025 1.188219 AGCGTGGAGACCTGTCACAT 61.188 55.000 0.00 0.00 0.00 3.21
2827 3028 1.800805 GTGGAGACCTGTCACATGTG 58.199 55.000 20.18 20.18 0.00 3.21
2831 3032 0.761187 AGACCTGTCACATGTGTGCT 59.239 50.000 24.63 11.26 45.25 4.40
2841 3042 2.988493 CACATGTGTGCTTAACCAATGC 59.012 45.455 18.03 0.00 39.39 3.56
2843 3044 3.247442 CATGTGTGCTTAACCAATGCAG 58.753 45.455 0.00 0.00 37.39 4.41
2845 3046 0.602562 TGTGCTTAACCAATGCAGCC 59.397 50.000 0.00 0.00 37.39 4.85
2854 3055 0.379669 CCAATGCAGCCAGAATCGTC 59.620 55.000 0.00 0.00 0.00 4.20
2855 3056 0.027194 CAATGCAGCCAGAATCGTCG 59.973 55.000 0.00 0.00 0.00 5.12
2858 3059 0.602638 TGCAGCCAGAATCGTCGTTT 60.603 50.000 0.00 0.00 0.00 3.60
2864 3065 2.223377 GCCAGAATCGTCGTTTGTTCTT 59.777 45.455 0.00 0.00 0.00 2.52
2910 3116 1.420430 TAGATCTTAAGTGGGCCGGG 58.580 55.000 2.18 0.00 0.00 5.73
2930 3136 1.612199 GCACCCTACGACCCATTTTGA 60.612 52.381 0.00 0.00 0.00 2.69
2934 3140 3.583966 ACCCTACGACCCATTTTGAACTA 59.416 43.478 0.00 0.00 0.00 2.24
2985 3193 7.250569 ACATGTAAATTATAACTGTGTGCTGC 58.749 34.615 0.00 0.00 0.00 5.25
3327 3569 2.758423 ACGTGCACCTGATGACTACATA 59.242 45.455 12.15 0.00 36.82 2.29
3357 3599 5.007724 GGTTCGAATCCTAGCCAACTATTTG 59.992 44.000 0.00 0.00 0.00 2.32
3364 3606 8.823220 AATCCTAGCCAACTATTTGTACATTT 57.177 30.769 0.00 0.00 0.00 2.32
3679 3975 1.324383 GTAGGGTCTCCAGCTAGCTC 58.676 60.000 16.15 2.61 34.83 4.09
3688 3984 1.620739 CCAGCTAGCTCAAGGCCTCA 61.621 60.000 16.15 0.00 43.05 3.86
3700 3996 5.130145 GCTCAAGGCCTCATGGATATATAGT 59.870 44.000 5.23 0.00 34.57 2.12
3705 4001 6.746894 AGGCCTCATGGATATATAGTGTACT 58.253 40.000 0.00 0.00 34.57 2.73
3707 4003 7.680310 AGGCCTCATGGATATATAGTGTACTTT 59.320 37.037 0.00 0.00 34.57 2.66
3773 4069 1.898574 CCCTTCCACGCTGCACTTT 60.899 57.895 0.00 0.00 0.00 2.66
3774 4070 1.283793 CCTTCCACGCTGCACTTTG 59.716 57.895 0.00 0.00 0.00 2.77
3775 4071 1.283793 CTTCCACGCTGCACTTTGG 59.716 57.895 0.00 0.23 0.00 3.28
3777 4075 2.594303 CCACGCTGCACTTTGGGA 60.594 61.111 0.00 0.00 0.00 4.37
3783 4081 1.203052 CGCTGCACTTTGGGATCAAAT 59.797 47.619 0.00 0.00 41.45 2.32
3784 4082 2.733227 CGCTGCACTTTGGGATCAAATC 60.733 50.000 0.00 0.00 41.45 2.17
3794 4092 1.512926 GGATCAAATCCCATCGTCCG 58.487 55.000 0.00 0.00 43.88 4.79
3796 4094 0.180171 ATCAAATCCCATCGTCCGCA 59.820 50.000 0.00 0.00 0.00 5.69
3834 4133 0.321919 GCTTGCTGACAGATGGACCA 60.322 55.000 6.65 0.00 0.00 4.02
3836 4135 2.719739 CTTGCTGACAGATGGACCAAT 58.280 47.619 6.65 0.00 0.00 3.16
3842 4141 3.544684 TGACAGATGGACCAATATGTGC 58.455 45.455 12.76 6.84 32.31 4.57
3846 4145 2.779430 AGATGGACCAATATGTGCCAGA 59.221 45.455 0.00 0.00 31.23 3.86
3866 4165 8.472201 GCCAGAGGCCTTTTCATGAGAAAAAT 62.472 42.308 6.77 0.00 44.89 1.82
3879 4178 6.884295 TCATGAGAAAAATTAATCCGAGTGGT 59.116 34.615 0.00 0.00 36.30 4.16
3880 4179 7.393234 TCATGAGAAAAATTAATCCGAGTGGTT 59.607 33.333 0.00 0.00 36.30 3.67
3883 4182 8.079809 TGAGAAAAATTAATCCGAGTGGTTTTC 58.920 33.333 8.61 8.61 34.99 2.29
3903 4202 4.314740 TCCACAAAATAACAAGCCACAC 57.685 40.909 0.00 0.00 0.00 3.82
3904 4203 3.701542 TCCACAAAATAACAAGCCACACA 59.298 39.130 0.00 0.00 0.00 3.72
3908 4207 2.373335 AATAACAAGCCACACACCCA 57.627 45.000 0.00 0.00 0.00 4.51
3913 4212 0.599558 CAAGCCACACACCCAATCTG 59.400 55.000 0.00 0.00 0.00 2.90
3920 4219 3.009723 CACACACCCAATCTGTACCATC 58.990 50.000 0.00 0.00 0.00 3.51
3923 4222 4.162320 ACACACCCAATCTGTACCATCTAG 59.838 45.833 0.00 0.00 0.00 2.43
3934 4233 3.376218 CCATCTAGTGGCTGACAGC 57.624 57.895 19.55 19.55 42.12 4.40
3935 4234 0.538584 CCATCTAGTGGCTGACAGCA 59.461 55.000 27.87 12.09 44.75 4.41
3972 4289 2.035176 CGTGTCCGTATACAAATGCGAC 60.035 50.000 3.32 0.00 43.03 5.19
4004 4321 0.249953 TGCATGCCAAAGCCAAGTTG 60.250 50.000 16.68 0.00 38.69 3.16
4011 4328 1.000274 CCAAAGCCAAGTTGTAGCACC 60.000 52.381 1.45 0.00 0.00 5.01
4013 4330 2.065899 AAGCCAAGTTGTAGCACCAA 57.934 45.000 1.45 0.00 0.00 3.67
4015 4332 1.888512 AGCCAAGTTGTAGCACCAATG 59.111 47.619 1.45 0.00 0.00 2.82
4042 4359 1.882912 TGCCACAAGTTCTAGCACTG 58.117 50.000 0.00 0.00 0.00 3.66
4093 4410 6.182507 ACCAGTGGTGTAATTGACTCTTTA 57.817 37.500 15.86 0.00 32.98 1.85
4402 4719 1.116536 TGCGTGGAACCACCTCAGTA 61.117 55.000 16.85 1.59 43.49 2.74
4444 4761 1.136110 GTCTCTGCTAGCAACCTCTCC 59.864 57.143 19.86 0.00 0.00 3.71
4459 4776 1.050988 TCTCCAGGGCAGCCAGATAC 61.051 60.000 15.19 0.00 0.00 2.24
4469 4786 2.809665 GCAGCCAGATACCCATTCAGAG 60.810 54.545 0.00 0.00 0.00 3.35
4511 4828 2.359107 CACAGCTCGCCATGGTGT 60.359 61.111 24.28 11.99 45.43 4.16
4530 4847 4.006319 GTGTTCCTGATCCCTTTCTTCAG 58.994 47.826 0.00 0.00 37.27 3.02
4588 4905 1.448985 CGGTGATGTTCCGGACAATT 58.551 50.000 1.83 0.00 42.62 2.32
4618 4935 4.390556 AGCGCCTCCCTCCTGTCT 62.391 66.667 2.29 0.00 0.00 3.41
4825 5142 2.886523 CCTTGTGTTGATCACCATGTGT 59.113 45.455 0.00 0.00 45.61 3.72
4858 5175 1.963464 GCTTTGCATGGTCATGGGGG 61.963 60.000 12.23 0.00 39.16 5.40
4943 5260 3.998672 TGGTCGCCGTGGTCTTCC 61.999 66.667 0.00 0.00 0.00 3.46
5002 5319 3.664025 CTGCCGCATCAAGTCGGGA 62.664 63.158 0.00 0.00 45.37 5.14
5071 5388 0.908198 ATCTGTTCCTGCCAGAGACC 59.092 55.000 0.00 0.00 41.91 3.85
5098 5415 1.139654 CTTCCGATGGAGCAGATGGAA 59.860 52.381 0.00 0.00 34.54 3.53
5192 5517 4.043938 AGGAGAGGCAAGAAAGGAAAATCT 59.956 41.667 0.00 0.00 0.00 2.40
5210 5535 0.533308 CTACTCGCCGAGCTCCTAGT 60.533 60.000 15.20 8.90 32.04 2.57
5217 5542 0.741915 CCGAGCTCCTAGTGACTTCC 59.258 60.000 8.47 0.00 0.00 3.46
5240 5565 6.657117 TCCGAACTTGAATGTATTTCCATCAA 59.343 34.615 0.00 0.00 33.04 2.57
5268 5593 5.472137 TGCAAGGAAAAACATAGTACAGGAC 59.528 40.000 0.00 0.00 0.00 3.85
5274 5599 9.856162 AGGAAAAACATAGTACAGGACTTTAAA 57.144 29.630 0.00 0.00 39.81 1.52
5275 5600 9.888878 GGAAAAACATAGTACAGGACTTTAAAC 57.111 33.333 0.00 0.00 39.81 2.01
5772 6110 4.141181 ACCATATAGACACATGCCAACCAT 60.141 41.667 0.00 0.00 33.39 3.55
5882 6220 3.313526 CCAGCTCCAAATTTCCAGTATCG 59.686 47.826 0.00 0.00 0.00 2.92
5901 6239 3.399330 TCGGGACAAAATCTGAAGACAC 58.601 45.455 0.00 0.00 0.00 3.67
6057 6395 7.255569 ACATTAATGATTCTGTCAACATGCAG 58.744 34.615 22.16 0.00 40.97 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.055248 CACACTGATTCTTTTTCGTAATTGATC 57.945 33.333 0.00 0.00 0.00 2.92
58 59 6.010219 ACACCAAAATGTAAGAATGCTAGGT 58.990 36.000 0.00 0.00 0.00 3.08
409 423 1.079336 GAGGTTCCTGTGGTACGCC 60.079 63.158 0.00 0.00 38.60 5.68
693 753 3.910648 AGCTCGGTTACTCACTTTGTAC 58.089 45.455 0.00 0.00 0.00 2.90
697 757 3.163467 AGGTAGCTCGGTTACTCACTTT 58.837 45.455 0.00 0.00 0.00 2.66
759 829 2.088423 TGTTGCGGGTGGAAATGATAC 58.912 47.619 0.00 0.00 0.00 2.24
786 857 2.270874 ATCGGTGGCCCTGTGGATTC 62.271 60.000 0.00 0.00 0.00 2.52
805 915 2.122729 CCTCTGGGGTCCCACTCA 59.877 66.667 10.98 0.00 41.89 3.41
912 1027 8.866214 AGGGAGGGAGAGAAAGAGATATATAAT 58.134 37.037 0.00 0.00 0.00 1.28
949 1065 1.669115 CAAGGGCAGAGTGTCGTGG 60.669 63.158 0.00 0.00 0.00 4.94
1146 1262 9.184523 TCTAGTCTAGAAAGAAGGAAGAAGATG 57.815 37.037 7.14 0.00 32.16 2.90
1168 1285 8.522542 AGGGTTAACAATCTACAGTACTCTAG 57.477 38.462 8.10 0.00 0.00 2.43
1169 1286 8.334734 AGAGGGTTAACAATCTACAGTACTCTA 58.665 37.037 8.10 0.00 0.00 2.43
1170 1287 7.183460 AGAGGGTTAACAATCTACAGTACTCT 58.817 38.462 8.10 0.00 0.00 3.24
1171 1288 7.407393 AGAGGGTTAACAATCTACAGTACTC 57.593 40.000 8.10 0.00 0.00 2.59
1172 1289 7.310485 CCAAGAGGGTTAACAATCTACAGTACT 60.310 40.741 8.10 0.00 0.00 2.73
1173 1290 6.817140 CCAAGAGGGTTAACAATCTACAGTAC 59.183 42.308 8.10 0.00 0.00 2.73
1174 1291 6.942976 CCAAGAGGGTTAACAATCTACAGTA 58.057 40.000 8.10 0.00 0.00 2.74
1175 1292 5.805728 CCAAGAGGGTTAACAATCTACAGT 58.194 41.667 8.10 0.00 0.00 3.55
1222 1340 3.669536 AGTCCAGCTTCTAACTTTCAGC 58.330 45.455 0.00 0.00 0.00 4.26
1309 1460 3.334583 TGGAAGAGAAAATCTCCACCG 57.665 47.619 3.82 0.00 44.42 4.94
1345 1496 2.553028 GGAAAGCACCCTGAACTCATCA 60.553 50.000 0.00 0.00 36.38 3.07
1347 1498 1.707427 AGGAAAGCACCCTGAACTCAT 59.293 47.619 0.00 0.00 31.66 2.90
1371 1527 9.871238 ATCATTTTGATCTGAAGAAAAATGGAG 57.129 29.630 22.13 8.88 44.45 3.86
1432 1588 4.264253 TGATGGAACGCATCATCTTTTCT 58.736 39.130 11.79 0.00 40.13 2.52
1465 1646 5.697848 ACTAAGTTCATCGCGTAATGTTC 57.302 39.130 5.77 1.89 0.00 3.18
1493 1675 5.070823 AGTGGGAATGGAAGAATGCATAT 57.929 39.130 0.00 0.00 36.48 1.78
1507 1689 1.077298 TTTGGGGTGGGAGTGGGAAT 61.077 55.000 0.00 0.00 0.00 3.01
1508 1690 1.077298 ATTTGGGGTGGGAGTGGGAA 61.077 55.000 0.00 0.00 0.00 3.97
1509 1691 1.077298 AATTTGGGGTGGGAGTGGGA 61.077 55.000 0.00 0.00 0.00 4.37
1510 1692 0.614697 GAATTTGGGGTGGGAGTGGG 60.615 60.000 0.00 0.00 0.00 4.61
1511 1693 0.114168 TGAATTTGGGGTGGGAGTGG 59.886 55.000 0.00 0.00 0.00 4.00
1512 1694 1.203050 AGTGAATTTGGGGTGGGAGTG 60.203 52.381 0.00 0.00 0.00 3.51
1513 1695 1.158007 AGTGAATTTGGGGTGGGAGT 58.842 50.000 0.00 0.00 0.00 3.85
1514 1696 1.075374 TCAGTGAATTTGGGGTGGGAG 59.925 52.381 0.00 0.00 0.00 4.30
1515 1697 1.153539 TCAGTGAATTTGGGGTGGGA 58.846 50.000 0.00 0.00 0.00 4.37
1516 1698 2.008242 TTCAGTGAATTTGGGGTGGG 57.992 50.000 0.08 0.00 0.00 4.61
1517 1699 2.965147 AGTTTCAGTGAATTTGGGGTGG 59.035 45.455 6.36 0.00 0.00 4.61
1518 1700 3.636300 TCAGTTTCAGTGAATTTGGGGTG 59.364 43.478 6.36 0.00 0.00 4.61
1519 1701 3.909732 TCAGTTTCAGTGAATTTGGGGT 58.090 40.909 6.36 0.00 0.00 4.95
1520 1702 4.935352 TTCAGTTTCAGTGAATTTGGGG 57.065 40.909 6.36 0.00 32.96 4.96
1521 1703 4.687483 GCATTCAGTTTCAGTGAATTTGGG 59.313 41.667 6.36 3.96 43.64 4.12
1522 1704 5.176223 GTGCATTCAGTTTCAGTGAATTTGG 59.824 40.000 6.36 0.00 43.64 3.28
1523 1705 5.108141 CGTGCATTCAGTTTCAGTGAATTTG 60.108 40.000 6.36 8.40 43.64 2.32
1530 1712 0.235665 CGCGTGCATTCAGTTTCAGT 59.764 50.000 0.00 0.00 0.00 3.41
1546 1728 2.860735 CCTAGAAGATTTCAGAACCGCG 59.139 50.000 0.00 0.00 0.00 6.46
1620 1802 2.282040 GCTGTCCTGCTTGTGGCT 60.282 61.111 0.00 0.00 42.39 4.75
1677 1859 2.579738 GGAGGAGGTGAAGACGGC 59.420 66.667 0.00 0.00 0.00 5.68
1735 1917 1.228657 GCCAAACCTCCTCGTGACAC 61.229 60.000 0.00 0.00 0.00 3.67
1775 1957 1.079405 GATGAAGACGGTTCCGCCA 60.079 57.895 11.32 5.14 36.97 5.69
1778 1960 2.165301 GGCGATGAAGACGGTTCCG 61.165 63.158 9.81 9.81 0.00 4.30
1802 1984 2.985847 GCTGCTCCCCAAAACGCT 60.986 61.111 0.00 0.00 0.00 5.07
1808 1990 3.565214 TTCACGGCTGCTCCCCAA 61.565 61.111 0.00 0.00 0.00 4.12
1809 1991 4.329545 GTTCACGGCTGCTCCCCA 62.330 66.667 0.00 0.00 0.00 4.96
1859 2041 0.551377 TGAACCCCAGGCCTATTCCA 60.551 55.000 3.98 0.00 0.00 3.53
2086 2270 0.950836 TGTACACAAAGCTTGCGCAT 59.049 45.000 12.75 0.00 39.10 4.73
2089 2273 1.597195 TGTCTGTACACAAAGCTTGCG 59.403 47.619 0.00 0.00 0.00 4.85
2090 2274 3.904136 ATGTCTGTACACAAAGCTTGC 57.096 42.857 0.00 0.00 38.78 4.01
2135 2320 2.441375 TGTCATCAACTTGGAGGTTGGA 59.559 45.455 7.37 0.00 44.52 3.53
2213 2398 4.269183 TCGGGTAGTCAATGCAATGATTT 58.731 39.130 7.91 2.53 0.00 2.17
2240 2426 4.213270 TGCACTTGCTACAAGATAACACAC 59.787 41.667 13.94 0.00 42.66 3.82
2345 2531 9.743057 CTGGTGTAATTGACTCAAAAATAAACA 57.257 29.630 0.00 0.00 0.00 2.83
2346 2532 9.744468 ACTGGTGTAATTGACTCAAAAATAAAC 57.256 29.630 0.00 0.00 0.00 2.01
2347 2533 9.743057 CACTGGTGTAATTGACTCAAAAATAAA 57.257 29.630 0.00 0.00 0.00 1.40
2348 2534 8.356657 CCACTGGTGTAATTGACTCAAAAATAA 58.643 33.333 0.00 0.00 0.00 1.40
2349 2535 7.504238 ACCACTGGTGTAATTGACTCAAAAATA 59.496 33.333 0.00 0.00 32.98 1.40
2350 2536 6.323739 ACCACTGGTGTAATTGACTCAAAAAT 59.676 34.615 0.00 0.00 32.98 1.82
2351 2537 5.654650 ACCACTGGTGTAATTGACTCAAAAA 59.345 36.000 0.00 0.00 32.98 1.94
2352 2538 5.197451 ACCACTGGTGTAATTGACTCAAAA 58.803 37.500 0.00 0.00 32.98 2.44
2353 2539 4.787551 ACCACTGGTGTAATTGACTCAAA 58.212 39.130 0.00 0.00 32.98 2.69
2354 2540 4.431416 ACCACTGGTGTAATTGACTCAA 57.569 40.909 0.00 0.00 32.98 3.02
2367 2553 2.949644 GTCAAGTTTTAGCACCACTGGT 59.050 45.455 0.00 0.00 35.62 4.00
2368 2554 2.032030 CGTCAAGTTTTAGCACCACTGG 60.032 50.000 0.00 0.00 0.00 4.00
2369 2555 2.602217 GCGTCAAGTTTTAGCACCACTG 60.602 50.000 0.00 0.00 0.00 3.66
2370 2556 1.602377 GCGTCAAGTTTTAGCACCACT 59.398 47.619 0.00 0.00 0.00 4.00
2371 2557 1.659211 CGCGTCAAGTTTTAGCACCAC 60.659 52.381 0.00 0.00 0.00 4.16
2372 2558 0.584396 CGCGTCAAGTTTTAGCACCA 59.416 50.000 0.00 0.00 0.00 4.17
2373 2559 0.863144 TCGCGTCAAGTTTTAGCACC 59.137 50.000 5.77 0.00 0.00 5.01
2374 2560 2.656192 TTCGCGTCAAGTTTTAGCAC 57.344 45.000 5.77 0.00 0.00 4.40
2375 2561 3.677190 TTTTCGCGTCAAGTTTTAGCA 57.323 38.095 5.77 0.00 0.00 3.49
2376 2562 4.673311 TGATTTTTCGCGTCAAGTTTTAGC 59.327 37.500 5.77 0.00 0.00 3.09
2377 2563 5.907391 AGTGATTTTTCGCGTCAAGTTTTAG 59.093 36.000 5.77 0.00 0.00 1.85
2378 2564 5.812652 AGTGATTTTTCGCGTCAAGTTTTA 58.187 33.333 5.77 0.00 0.00 1.52
2379 2565 4.668289 AGTGATTTTTCGCGTCAAGTTTT 58.332 34.783 5.77 0.00 0.00 2.43
2380 2566 4.287238 AGTGATTTTTCGCGTCAAGTTT 57.713 36.364 5.77 0.00 0.00 2.66
2381 2567 3.963383 AGTGATTTTTCGCGTCAAGTT 57.037 38.095 5.77 0.00 0.00 2.66
2382 2568 3.963383 AAGTGATTTTTCGCGTCAAGT 57.037 38.095 5.77 0.00 0.00 3.16
2383 2569 5.440685 ACTAAAGTGATTTTTCGCGTCAAG 58.559 37.500 5.77 0.00 0.00 3.02
2384 2570 5.412526 ACTAAAGTGATTTTTCGCGTCAA 57.587 34.783 5.77 0.00 0.00 3.18
2385 2571 5.107375 GGTACTAAAGTGATTTTTCGCGTCA 60.107 40.000 5.77 0.00 0.00 4.35
2386 2572 5.107375 TGGTACTAAAGTGATTTTTCGCGTC 60.107 40.000 5.77 0.00 0.00 5.19
2387 2573 4.751098 TGGTACTAAAGTGATTTTTCGCGT 59.249 37.500 5.77 0.00 0.00 6.01
2388 2574 5.272167 TGGTACTAAAGTGATTTTTCGCG 57.728 39.130 0.00 0.00 0.00 5.87
2389 2575 7.646526 AGTTTTGGTACTAAAGTGATTTTTCGC 59.353 33.333 4.49 0.00 0.00 4.70
2390 2576 9.511144 AAGTTTTGGTACTAAAGTGATTTTTCG 57.489 29.630 4.49 0.00 0.00 3.46
2395 2581 8.520351 GCCATAAGTTTTGGTACTAAAGTGATT 58.480 33.333 13.13 2.34 36.57 2.57
2396 2582 7.668052 TGCCATAAGTTTTGGTACTAAAGTGAT 59.332 33.333 13.13 0.03 36.57 3.06
2397 2583 6.999272 TGCCATAAGTTTTGGTACTAAAGTGA 59.001 34.615 13.13 0.00 36.57 3.41
2398 2584 7.209471 TGCCATAAGTTTTGGTACTAAAGTG 57.791 36.000 13.13 1.69 36.57 3.16
2399 2585 8.953313 GTATGCCATAAGTTTTGGTACTAAAGT 58.047 33.333 13.13 0.86 36.57 2.66
2400 2586 8.952278 TGTATGCCATAAGTTTTGGTACTAAAG 58.048 33.333 13.13 0.00 36.57 1.85
2401 2587 8.865420 TGTATGCCATAAGTTTTGGTACTAAA 57.135 30.769 13.13 0.00 36.57 1.85
2402 2588 8.865420 TTGTATGCCATAAGTTTTGGTACTAA 57.135 30.769 13.13 3.83 36.57 2.24
2403 2589 8.898761 CATTGTATGCCATAAGTTTTGGTACTA 58.101 33.333 13.13 6.88 36.57 1.82
2404 2590 7.613801 TCATTGTATGCCATAAGTTTTGGTACT 59.386 33.333 13.13 3.41 36.57 2.73
2405 2591 7.767261 TCATTGTATGCCATAAGTTTTGGTAC 58.233 34.615 13.13 9.34 36.57 3.34
2406 2592 7.946381 TCATTGTATGCCATAAGTTTTGGTA 57.054 32.000 13.13 9.56 36.57 3.25
2407 2593 6.849085 TCATTGTATGCCATAAGTTTTGGT 57.151 33.333 13.13 0.00 36.57 3.67
2408 2594 7.322664 AGTTCATTGTATGCCATAAGTTTTGG 58.677 34.615 7.91 7.91 37.31 3.28
2409 2595 9.507280 CTAGTTCATTGTATGCCATAAGTTTTG 57.493 33.333 0.00 0.00 0.00 2.44
2410 2596 9.243105 ACTAGTTCATTGTATGCCATAAGTTTT 57.757 29.630 0.00 0.00 0.00 2.43
2411 2597 8.677300 CACTAGTTCATTGTATGCCATAAGTTT 58.323 33.333 0.00 0.00 0.00 2.66
2412 2598 7.201732 GCACTAGTTCATTGTATGCCATAAGTT 60.202 37.037 0.00 0.00 0.00 2.66
2413 2599 6.260936 GCACTAGTTCATTGTATGCCATAAGT 59.739 38.462 0.00 0.00 0.00 2.24
2414 2600 6.484643 AGCACTAGTTCATTGTATGCCATAAG 59.515 38.462 0.00 0.00 31.94 1.73
2415 2601 6.356556 AGCACTAGTTCATTGTATGCCATAA 58.643 36.000 0.00 0.00 31.94 1.90
2416 2602 5.928976 AGCACTAGTTCATTGTATGCCATA 58.071 37.500 0.00 0.00 31.94 2.74
2417 2603 4.785301 AGCACTAGTTCATTGTATGCCAT 58.215 39.130 0.00 0.00 31.94 4.40
2418 2604 4.220693 AGCACTAGTTCATTGTATGCCA 57.779 40.909 0.00 0.00 31.94 4.92
2419 2605 6.677781 TTTAGCACTAGTTCATTGTATGCC 57.322 37.500 0.00 0.00 31.94 4.40
2420 2606 7.752695 AGTTTTAGCACTAGTTCATTGTATGC 58.247 34.615 0.00 0.00 0.00 3.14
2421 2607 9.546909 CAAGTTTTAGCACTAGTTCATTGTATG 57.453 33.333 0.00 0.00 0.00 2.39
2422 2608 8.730680 CCAAGTTTTAGCACTAGTTCATTGTAT 58.269 33.333 0.00 0.00 0.00 2.29
2423 2609 7.308348 GCCAAGTTTTAGCACTAGTTCATTGTA 60.308 37.037 0.00 0.00 0.00 2.41
2424 2610 6.515035 GCCAAGTTTTAGCACTAGTTCATTGT 60.515 38.462 0.00 0.00 0.00 2.71
2425 2611 5.858581 GCCAAGTTTTAGCACTAGTTCATTG 59.141 40.000 0.00 0.00 0.00 2.82
2426 2612 5.770162 AGCCAAGTTTTAGCACTAGTTCATT 59.230 36.000 0.00 0.00 0.00 2.57
2427 2613 5.316987 AGCCAAGTTTTAGCACTAGTTCAT 58.683 37.500 0.00 0.00 0.00 2.57
2428 2614 4.714632 AGCCAAGTTTTAGCACTAGTTCA 58.285 39.130 0.00 0.00 0.00 3.18
2429 2615 5.614887 CGAAGCCAAGTTTTAGCACTAGTTC 60.615 44.000 0.00 0.00 0.00 3.01
2430 2616 4.213482 CGAAGCCAAGTTTTAGCACTAGTT 59.787 41.667 0.00 0.00 0.00 2.24
2431 2617 3.746492 CGAAGCCAAGTTTTAGCACTAGT 59.254 43.478 0.00 0.00 0.00 2.57
2432 2618 3.125316 CCGAAGCCAAGTTTTAGCACTAG 59.875 47.826 0.00 0.00 0.00 2.57
2433 2619 3.071479 CCGAAGCCAAGTTTTAGCACTA 58.929 45.455 0.00 0.00 0.00 2.74
2434 2620 1.880027 CCGAAGCCAAGTTTTAGCACT 59.120 47.619 0.00 0.00 0.00 4.40
2435 2621 1.666023 GCCGAAGCCAAGTTTTAGCAC 60.666 52.381 0.00 0.00 0.00 4.40
2436 2622 0.596082 GCCGAAGCCAAGTTTTAGCA 59.404 50.000 0.00 0.00 0.00 3.49
2437 2623 0.454452 CGCCGAAGCCAAGTTTTAGC 60.454 55.000 0.00 0.00 34.57 3.09
2438 2624 0.872388 ACGCCGAAGCCAAGTTTTAG 59.128 50.000 0.00 0.00 34.57 1.85
2439 2625 0.589223 CACGCCGAAGCCAAGTTTTA 59.411 50.000 0.00 0.00 34.57 1.52
2440 2626 1.358759 CACGCCGAAGCCAAGTTTT 59.641 52.632 0.00 0.00 34.57 2.43
2441 2627 3.030652 CACGCCGAAGCCAAGTTT 58.969 55.556 0.00 0.00 34.57 2.66
2442 2628 3.660111 GCACGCCGAAGCCAAGTT 61.660 61.111 0.00 0.00 34.57 2.66
2443 2629 2.796483 TATGCACGCCGAAGCCAAGT 62.796 55.000 0.00 0.00 34.57 3.16
2444 2630 1.439353 ATATGCACGCCGAAGCCAAG 61.439 55.000 0.00 0.00 34.57 3.61
2445 2631 1.451207 ATATGCACGCCGAAGCCAA 60.451 52.632 0.00 0.00 34.57 4.52
2446 2632 2.179547 CATATGCACGCCGAAGCCA 61.180 57.895 0.00 0.00 34.57 4.75
2447 2633 2.180204 ACATATGCACGCCGAAGCC 61.180 57.895 1.58 0.00 34.57 4.35
2448 2634 1.010797 CACATATGCACGCCGAAGC 60.011 57.895 1.58 0.00 0.00 3.86
2462 2648 8.522003 TGTCAGTAACAAATATGATTTGCACAT 58.478 29.630 11.00 0.00 34.03 3.21
2463 2649 7.880105 TGTCAGTAACAAATATGATTTGCACA 58.120 30.769 11.00 3.74 34.03 4.57
2464 2650 8.800972 CATGTCAGTAACAAATATGATTTGCAC 58.199 33.333 11.00 9.46 42.37 4.57
2465 2651 7.975058 CCATGTCAGTAACAAATATGATTTGCA 59.025 33.333 11.00 0.00 42.37 4.08
2466 2652 7.975616 ACCATGTCAGTAACAAATATGATTTGC 59.024 33.333 11.00 0.00 42.37 3.68
2467 2653 9.292846 CACCATGTCAGTAACAAATATGATTTG 57.707 33.333 9.78 9.78 42.37 2.32
2468 2654 7.975616 GCACCATGTCAGTAACAAATATGATTT 59.024 33.333 0.00 0.00 42.37 2.17
2469 2655 7.340232 AGCACCATGTCAGTAACAAATATGATT 59.660 33.333 0.00 0.00 42.37 2.57
2470 2656 6.830324 AGCACCATGTCAGTAACAAATATGAT 59.170 34.615 0.00 0.00 42.37 2.45
2471 2657 6.093909 CAGCACCATGTCAGTAACAAATATGA 59.906 38.462 0.00 0.00 42.37 2.15
2472 2658 6.093909 TCAGCACCATGTCAGTAACAAATATG 59.906 38.462 0.00 0.00 42.37 1.78
2473 2659 6.179756 TCAGCACCATGTCAGTAACAAATAT 58.820 36.000 0.00 0.00 42.37 1.28
2474 2660 5.555966 TCAGCACCATGTCAGTAACAAATA 58.444 37.500 0.00 0.00 42.37 1.40
2475 2661 4.397420 TCAGCACCATGTCAGTAACAAAT 58.603 39.130 0.00 0.00 42.37 2.32
2476 2662 3.814625 TCAGCACCATGTCAGTAACAAA 58.185 40.909 0.00 0.00 42.37 2.83
2477 2663 3.483808 TCAGCACCATGTCAGTAACAA 57.516 42.857 0.00 0.00 42.37 2.83
2478 2664 3.701205 ATCAGCACCATGTCAGTAACA 57.299 42.857 0.00 0.00 43.51 2.41
2479 2665 4.572389 CCTAATCAGCACCATGTCAGTAAC 59.428 45.833 0.00 0.00 0.00 2.50
2480 2666 4.769688 CCTAATCAGCACCATGTCAGTAA 58.230 43.478 0.00 0.00 0.00 2.24
2481 2667 3.432186 GCCTAATCAGCACCATGTCAGTA 60.432 47.826 0.00 0.00 0.00 2.74
2482 2668 2.681976 GCCTAATCAGCACCATGTCAGT 60.682 50.000 0.00 0.00 0.00 3.41
2483 2669 1.945394 GCCTAATCAGCACCATGTCAG 59.055 52.381 0.00 0.00 0.00 3.51
2484 2670 1.281577 TGCCTAATCAGCACCATGTCA 59.718 47.619 0.00 0.00 34.69 3.58
2485 2671 2.042686 TGCCTAATCAGCACCATGTC 57.957 50.000 0.00 0.00 34.69 3.06
2486 2672 2.304092 CATGCCTAATCAGCACCATGT 58.696 47.619 0.00 0.00 44.40 3.21
2487 2673 1.000607 GCATGCCTAATCAGCACCATG 60.001 52.381 6.36 0.00 44.40 3.66
2488 2674 1.325355 GCATGCCTAATCAGCACCAT 58.675 50.000 6.36 0.00 44.40 3.55
2489 2675 0.752743 GGCATGCCTAATCAGCACCA 60.753 55.000 29.98 0.00 44.40 4.17
2490 2676 1.789078 CGGCATGCCTAATCAGCACC 61.789 60.000 33.07 3.61 44.40 5.01
2491 2677 1.650912 CGGCATGCCTAATCAGCAC 59.349 57.895 33.07 4.15 44.40 4.40
2492 2678 2.188829 GCGGCATGCCTAATCAGCA 61.189 57.895 33.07 0.00 45.94 4.41
2493 2679 1.521450 ATGCGGCATGCCTAATCAGC 61.521 55.000 33.07 26.53 45.60 4.26
2494 2680 0.240145 CATGCGGCATGCCTAATCAG 59.760 55.000 33.07 18.06 45.60 2.90
2495 2681 0.179023 TCATGCGGCATGCCTAATCA 60.179 50.000 32.60 23.66 45.60 2.57
2496 2682 0.239347 GTCATGCGGCATGCCTAATC 59.761 55.000 32.60 19.22 45.60 1.75
2497 2683 0.466007 TGTCATGCGGCATGCCTAAT 60.466 50.000 32.60 22.80 45.60 1.73
2498 2684 0.466007 ATGTCATGCGGCATGCCTAA 60.466 50.000 32.60 21.58 45.60 2.69
2499 2685 1.148949 ATGTCATGCGGCATGCCTA 59.851 52.632 32.60 22.38 45.60 3.93
2500 2686 2.124024 ATGTCATGCGGCATGCCT 60.124 55.556 32.60 19.44 45.60 4.75
2501 2687 2.027024 CATGTCATGCGGCATGCC 59.973 61.111 32.60 27.67 45.60 4.40
2502 2688 1.008881 CTCATGTCATGCGGCATGC 60.009 57.895 32.60 26.75 41.18 4.06
2503 2689 1.652563 CCTCATGTCATGCGGCATG 59.347 57.895 31.85 31.85 42.60 4.06
2504 2690 4.152644 CCTCATGTCATGCGGCAT 57.847 55.556 10.23 10.23 0.00 4.40
2507 2693 2.903855 GGGCCTCATGTCATGCGG 60.904 66.667 16.22 16.22 38.18 5.69
2508 2694 3.274586 CGGGCCTCATGTCATGCG 61.275 66.667 8.03 1.60 0.00 4.73
2509 2695 3.589881 GCGGGCCTCATGTCATGC 61.590 66.667 8.03 0.00 0.00 4.06
2510 2696 2.184830 CAGCGGGCCTCATGTCATG 61.185 63.158 0.84 6.47 0.00 3.07
2511 2697 2.191375 CAGCGGGCCTCATGTCAT 59.809 61.111 0.84 0.00 0.00 3.06
2512 2698 3.315142 GACAGCGGGCCTCATGTCA 62.315 63.158 21.93 0.00 41.32 3.58
2513 2699 2.512515 GACAGCGGGCCTCATGTC 60.513 66.667 15.60 15.60 35.71 3.06
2514 2700 3.320879 CTGACAGCGGGCCTCATGT 62.321 63.158 0.84 4.66 0.00 3.21
2515 2701 2.513204 CTGACAGCGGGCCTCATG 60.513 66.667 0.84 0.85 0.00 3.07
2516 2702 2.685017 TCTGACAGCGGGCCTCAT 60.685 61.111 0.84 0.00 0.00 2.90
2517 2703 3.695606 GTCTGACAGCGGGCCTCA 61.696 66.667 0.84 0.00 0.00 3.86
2518 2704 3.695606 TGTCTGACAGCGGGCCTC 61.696 66.667 6.36 0.00 0.00 4.70
2519 2705 4.008933 GTGTCTGACAGCGGGCCT 62.009 66.667 11.41 0.00 0.00 5.19
2520 2706 2.167398 TTAGTGTCTGACAGCGGGCC 62.167 60.000 11.41 0.00 0.00 5.80
2521 2707 0.320421 TTTAGTGTCTGACAGCGGGC 60.320 55.000 11.41 0.00 0.00 6.13
2522 2708 2.002586 CATTTAGTGTCTGACAGCGGG 58.997 52.381 11.41 0.00 0.00 6.13
2523 2709 2.688507 ACATTTAGTGTCTGACAGCGG 58.311 47.619 11.41 0.98 35.77 5.52
2524 2710 4.733850 TCTACATTTAGTGTCTGACAGCG 58.266 43.478 11.41 0.00 42.29 5.18
2525 2711 5.105752 CCTCTACATTTAGTGTCTGACAGC 58.894 45.833 11.41 6.51 42.29 4.40
2526 2712 6.274157 ACCTCTACATTTAGTGTCTGACAG 57.726 41.667 11.41 0.68 42.29 3.51
2527 2713 6.377429 CCTACCTCTACATTTAGTGTCTGACA 59.623 42.308 6.36 6.36 42.29 3.58
2528 2714 6.602406 TCCTACCTCTACATTTAGTGTCTGAC 59.398 42.308 0.00 0.00 42.29 3.51
2529 2715 6.728411 TCCTACCTCTACATTTAGTGTCTGA 58.272 40.000 0.00 0.00 42.29 3.27
2530 2716 7.068839 ACATCCTACCTCTACATTTAGTGTCTG 59.931 40.741 0.00 0.00 42.29 3.51
2531 2717 7.068839 CACATCCTACCTCTACATTTAGTGTCT 59.931 40.741 0.00 0.00 42.29 3.41
2532 2718 7.203910 CACATCCTACCTCTACATTTAGTGTC 58.796 42.308 0.00 0.00 42.29 3.67
2533 2719 6.407074 GCACATCCTACCTCTACATTTAGTGT 60.407 42.308 0.00 0.00 44.95 3.55
2534 2720 5.986135 GCACATCCTACCTCTACATTTAGTG 59.014 44.000 0.00 0.00 0.00 2.74
2535 2721 5.221263 CGCACATCCTACCTCTACATTTAGT 60.221 44.000 0.00 0.00 0.00 2.24
2536 2722 5.223382 CGCACATCCTACCTCTACATTTAG 58.777 45.833 0.00 0.00 0.00 1.85
2537 2723 4.038763 CCGCACATCCTACCTCTACATTTA 59.961 45.833 0.00 0.00 0.00 1.40
2538 2724 3.181465 CCGCACATCCTACCTCTACATTT 60.181 47.826 0.00 0.00 0.00 2.32
2539 2725 2.365617 CCGCACATCCTACCTCTACATT 59.634 50.000 0.00 0.00 0.00 2.71
2540 2726 1.964223 CCGCACATCCTACCTCTACAT 59.036 52.381 0.00 0.00 0.00 2.29
2541 2727 1.399714 CCGCACATCCTACCTCTACA 58.600 55.000 0.00 0.00 0.00 2.74
2542 2728 0.032267 GCCGCACATCCTACCTCTAC 59.968 60.000 0.00 0.00 0.00 2.59
2543 2729 1.113517 GGCCGCACATCCTACCTCTA 61.114 60.000 0.00 0.00 0.00 2.43
2544 2730 2.435693 GGCCGCACATCCTACCTCT 61.436 63.158 0.00 0.00 0.00 3.69
2545 2731 2.109181 GGCCGCACATCCTACCTC 59.891 66.667 0.00 0.00 0.00 3.85
2546 2732 2.365635 AGGCCGCACATCCTACCT 60.366 61.111 0.00 0.00 0.00 3.08
2547 2733 2.203070 CAGGCCGCACATCCTACC 60.203 66.667 0.00 0.00 0.00 3.18
2548 2734 0.177141 TAACAGGCCGCACATCCTAC 59.823 55.000 0.00 0.00 0.00 3.18
2549 2735 1.128200 ATAACAGGCCGCACATCCTA 58.872 50.000 0.00 0.00 0.00 2.94
2550 2736 0.255890 AATAACAGGCCGCACATCCT 59.744 50.000 0.00 0.00 0.00 3.24
2551 2737 1.102978 AAATAACAGGCCGCACATCC 58.897 50.000 0.00 0.00 0.00 3.51
2552 2738 2.094752 ACAAAATAACAGGCCGCACATC 60.095 45.455 0.00 0.00 0.00 3.06
2553 2739 1.892474 ACAAAATAACAGGCCGCACAT 59.108 42.857 0.00 0.00 0.00 3.21
2554 2740 1.000827 CACAAAATAACAGGCCGCACA 60.001 47.619 0.00 0.00 0.00 4.57
2555 2741 1.668628 CCACAAAATAACAGGCCGCAC 60.669 52.381 0.00 0.00 0.00 5.34
2556 2742 0.600557 CCACAAAATAACAGGCCGCA 59.399 50.000 0.00 0.00 0.00 5.69
2557 2743 0.735978 GCCACAAAATAACAGGCCGC 60.736 55.000 0.00 0.00 39.42 6.53
2558 2744 0.600557 TGCCACAAAATAACAGGCCG 59.399 50.000 0.00 0.00 44.60 6.13
2559 2745 3.333029 AATGCCACAAAATAACAGGCC 57.667 42.857 0.00 0.00 44.60 5.19
2560 2746 3.120234 GCAAATGCCACAAAATAACAGGC 60.120 43.478 0.00 0.00 45.41 4.85
2561 2747 4.063689 TGCAAATGCCACAAAATAACAGG 58.936 39.130 2.46 0.00 41.18 4.00
2562 2748 5.866335 ATGCAAATGCCACAAAATAACAG 57.134 34.783 2.46 0.00 41.18 3.16
2563 2749 6.315642 CCATATGCAAATGCCACAAAATAACA 59.684 34.615 2.46 0.00 41.18 2.41
2564 2750 6.538021 TCCATATGCAAATGCCACAAAATAAC 59.462 34.615 2.46 0.00 41.18 1.89
2565 2751 6.538021 GTCCATATGCAAATGCCACAAAATAA 59.462 34.615 2.46 0.00 41.18 1.40
2566 2752 6.047870 GTCCATATGCAAATGCCACAAAATA 58.952 36.000 2.46 0.00 41.18 1.40
2567 2753 4.877251 GTCCATATGCAAATGCCACAAAAT 59.123 37.500 2.46 0.00 41.18 1.82
2568 2754 4.252073 GTCCATATGCAAATGCCACAAAA 58.748 39.130 2.46 0.00 41.18 2.44
2569 2755 3.260128 TGTCCATATGCAAATGCCACAAA 59.740 39.130 2.46 0.00 41.18 2.83
2570 2756 2.830321 TGTCCATATGCAAATGCCACAA 59.170 40.909 2.46 0.00 41.18 3.33
2571 2757 2.454538 TGTCCATATGCAAATGCCACA 58.545 42.857 2.46 0.00 41.18 4.17
2572 2758 3.386486 CATGTCCATATGCAAATGCCAC 58.614 45.455 2.46 0.00 41.18 5.01
2573 2759 2.365941 CCATGTCCATATGCAAATGCCA 59.634 45.455 2.46 0.00 41.18 4.92
2574 2760 2.366266 ACCATGTCCATATGCAAATGCC 59.634 45.455 2.46 0.00 41.18 4.40
2575 2761 3.738830 ACCATGTCCATATGCAAATGC 57.261 42.857 0.00 0.00 42.50 3.56
2576 2762 5.532032 TCAGTACCATGTCCATATGCAAATG 59.468 40.000 0.00 0.00 0.00 2.32
2577 2763 5.693961 TCAGTACCATGTCCATATGCAAAT 58.306 37.500 0.00 0.00 0.00 2.32
2578 2764 5.109500 TCAGTACCATGTCCATATGCAAA 57.891 39.130 0.00 0.00 0.00 3.68
2579 2765 4.769345 TCAGTACCATGTCCATATGCAA 57.231 40.909 0.00 0.00 0.00 4.08
2580 2766 4.980339 ATCAGTACCATGTCCATATGCA 57.020 40.909 0.00 0.00 0.00 3.96
2581 2767 5.877012 CCTAATCAGTACCATGTCCATATGC 59.123 44.000 0.00 0.00 0.00 3.14
2582 2768 5.877012 GCCTAATCAGTACCATGTCCATATG 59.123 44.000 0.00 0.00 0.00 1.78
2583 2769 5.337571 CGCCTAATCAGTACCATGTCCATAT 60.338 44.000 0.00 0.00 0.00 1.78
2584 2770 4.021456 CGCCTAATCAGTACCATGTCCATA 60.021 45.833 0.00 0.00 0.00 2.74
2585 2771 3.244215 CGCCTAATCAGTACCATGTCCAT 60.244 47.826 0.00 0.00 0.00 3.41
2586 2772 2.102420 CGCCTAATCAGTACCATGTCCA 59.898 50.000 0.00 0.00 0.00 4.02
2587 2773 2.755650 CGCCTAATCAGTACCATGTCC 58.244 52.381 0.00 0.00 0.00 4.02
2588 2774 2.135933 GCGCCTAATCAGTACCATGTC 58.864 52.381 0.00 0.00 0.00 3.06
2589 2775 1.538204 CGCGCCTAATCAGTACCATGT 60.538 52.381 0.00 0.00 0.00 3.21
2590 2776 1.139989 CGCGCCTAATCAGTACCATG 58.860 55.000 0.00 0.00 0.00 3.66
2591 2777 0.600255 GCGCGCCTAATCAGTACCAT 60.600 55.000 23.24 0.00 0.00 3.55
2592 2778 1.227147 GCGCGCCTAATCAGTACCA 60.227 57.895 23.24 0.00 0.00 3.25
2593 2779 1.954651 GGCGCGCCTAATCAGTACC 60.955 63.158 41.71 11.62 0.00 3.34
2594 2780 0.600255 ATGGCGCGCCTAATCAGTAC 60.600 55.000 45.79 19.89 36.94 2.73
2595 2781 0.963225 TATGGCGCGCCTAATCAGTA 59.037 50.000 45.79 27.14 36.94 2.74
2596 2782 0.321671 ATATGGCGCGCCTAATCAGT 59.678 50.000 45.79 25.47 36.94 3.41
2597 2783 0.723414 CATATGGCGCGCCTAATCAG 59.277 55.000 45.79 27.84 36.94 2.90
2598 2784 0.673333 CCATATGGCGCGCCTAATCA 60.673 55.000 45.79 29.48 36.94 2.57
2599 2785 2.089854 CCATATGGCGCGCCTAATC 58.910 57.895 45.79 23.70 36.94 1.75
2600 2786 4.301505 CCATATGGCGCGCCTAAT 57.698 55.556 45.79 35.04 36.94 1.73
2617 2803 4.783621 TGACAGCGGGCCTCATGC 62.784 66.667 0.84 1.73 40.16 4.06
2618 2804 2.513204 CTGACAGCGGGCCTCATG 60.513 66.667 0.84 0.85 0.00 3.07
2619 2805 2.685017 TCTGACAGCGGGCCTCAT 60.685 61.111 0.84 0.00 0.00 2.90
2620 2806 3.695606 GTCTGACAGCGGGCCTCA 61.696 66.667 0.84 0.00 0.00 3.86
2621 2807 3.695606 TGTCTGACAGCGGGCCTC 61.696 66.667 6.36 0.00 0.00 4.70
2622 2808 4.008933 GTGTCTGACAGCGGGCCT 62.009 66.667 11.41 0.00 0.00 5.19
2623 2809 2.167398 TTAGTGTCTGACAGCGGGCC 62.167 60.000 11.41 0.00 0.00 5.80
2624 2810 0.320421 TTTAGTGTCTGACAGCGGGC 60.320 55.000 11.41 0.00 0.00 6.13
2625 2811 1.673033 CCTTTAGTGTCTGACAGCGGG 60.673 57.143 11.41 5.88 0.00 6.13
2626 2812 1.714794 CCTTTAGTGTCTGACAGCGG 58.285 55.000 11.41 3.83 0.00 5.52
2627 2813 1.071605 GCCTTTAGTGTCTGACAGCG 58.928 55.000 11.41 0.00 0.00 5.18
2628 2814 1.443802 GGCCTTTAGTGTCTGACAGC 58.556 55.000 11.41 9.66 0.00 4.40
2629 2815 1.673033 CGGGCCTTTAGTGTCTGACAG 60.673 57.143 11.41 0.00 0.00 3.51
2630 2816 0.320374 CGGGCCTTTAGTGTCTGACA 59.680 55.000 6.36 6.36 0.00 3.58
2631 2817 1.019805 GCGGGCCTTTAGTGTCTGAC 61.020 60.000 0.84 0.00 0.00 3.51
2632 2818 1.192146 AGCGGGCCTTTAGTGTCTGA 61.192 55.000 0.84 0.00 0.00 3.27
2633 2819 1.021390 CAGCGGGCCTTTAGTGTCTG 61.021 60.000 0.84 0.00 0.00 3.51
2634 2820 1.296715 CAGCGGGCCTTTAGTGTCT 59.703 57.895 0.84 0.00 0.00 3.41
2635 2821 1.003718 ACAGCGGGCCTTTAGTGTC 60.004 57.895 0.84 0.00 0.00 3.67
2636 2822 1.003718 GACAGCGGGCCTTTAGTGT 60.004 57.895 0.84 0.00 0.00 3.55
2637 2823 0.392998 ATGACAGCGGGCCTTTAGTG 60.393 55.000 0.84 0.00 0.00 2.74
2638 2824 1.134491 GTATGACAGCGGGCCTTTAGT 60.134 52.381 0.84 0.00 0.00 2.24
2639 2825 1.134521 TGTATGACAGCGGGCCTTTAG 60.135 52.381 0.84 0.00 0.00 1.85
2640 2826 0.906066 TGTATGACAGCGGGCCTTTA 59.094 50.000 0.84 0.00 0.00 1.85
2641 2827 0.676782 GTGTATGACAGCGGGCCTTT 60.677 55.000 0.84 0.00 0.00 3.11
2642 2828 1.078426 GTGTATGACAGCGGGCCTT 60.078 57.895 0.84 0.00 0.00 4.35
2643 2829 0.686441 TAGTGTATGACAGCGGGCCT 60.686 55.000 0.84 0.00 0.00 5.19
2644 2830 0.177141 TTAGTGTATGACAGCGGGCC 59.823 55.000 0.00 0.00 0.00 5.80
2645 2831 2.018542 TTTAGTGTATGACAGCGGGC 57.981 50.000 0.00 0.00 0.00 6.13
2649 2835 9.619316 CTATCTCTACATTTAGTGTATGACAGC 57.381 37.037 0.00 0.00 42.21 4.40
2654 2840 7.030165 CGCCCTATCTCTACATTTAGTGTATG 58.970 42.308 0.00 0.00 42.21 2.39
2656 2842 6.016527 CACGCCCTATCTCTACATTTAGTGTA 60.017 42.308 0.00 0.00 42.29 2.90
2657 2843 4.894114 ACGCCCTATCTCTACATTTAGTGT 59.106 41.667 0.00 0.00 44.95 3.55
2660 2846 4.238514 GCACGCCCTATCTCTACATTTAG 58.761 47.826 0.00 0.00 0.00 1.85
2679 2866 2.295909 TCCACAAAATAACAGGCTGCAC 59.704 45.455 15.89 0.00 0.00 4.57
2682 2869 5.234116 GTGTTTTCCACAAAATAACAGGCTG 59.766 40.000 14.16 14.16 43.92 4.85
2683 2870 5.356426 GTGTTTTCCACAAAATAACAGGCT 58.644 37.500 0.00 0.00 43.92 4.58
2728 2915 3.642705 GAAATGTGTCAGTGGCCTTTTC 58.357 45.455 3.32 1.19 0.00 2.29
2759 2947 1.551883 GGCCACAATTTTCCAGCTGAT 59.448 47.619 17.39 0.00 0.00 2.90
2765 2953 2.291282 ACCTATCGGCCACAATTTTCCA 60.291 45.455 2.24 0.00 0.00 3.53
2766 2954 2.375146 ACCTATCGGCCACAATTTTCC 58.625 47.619 2.24 0.00 0.00 3.13
2773 2974 2.156098 GTTTGAAACCTATCGGCCACA 58.844 47.619 2.24 0.00 0.00 4.17
2785 2986 2.793278 ACAGATTGCGGGTTTGAAAC 57.207 45.000 0.00 0.00 0.00 2.78
2789 2990 3.996825 GCTACAGATTGCGGGTTTG 57.003 52.632 0.00 0.00 0.00 2.93
2797 2998 1.478510 AGGTCTCCACGCTACAGATTG 59.521 52.381 0.00 0.00 0.00 2.67
2798 2999 1.478510 CAGGTCTCCACGCTACAGATT 59.521 52.381 0.00 0.00 0.00 2.40
2804 3005 0.538746 TGTGACAGGTCTCCACGCTA 60.539 55.000 0.65 0.00 33.78 4.26
2808 3009 1.070758 ACACATGTGACAGGTCTCCAC 59.929 52.381 31.94 0.00 0.00 4.02
2821 3022 2.627221 TGCATTGGTTAAGCACACATGT 59.373 40.909 6.90 0.00 32.55 3.21
2822 3023 3.247442 CTGCATTGGTTAAGCACACATG 58.753 45.455 6.90 9.84 34.13 3.21
2823 3024 2.353011 GCTGCATTGGTTAAGCACACAT 60.353 45.455 6.90 0.00 35.69 3.21
2824 3025 1.000385 GCTGCATTGGTTAAGCACACA 60.000 47.619 6.90 5.18 35.69 3.72
2827 3028 0.602562 TGGCTGCATTGGTTAAGCAC 59.397 50.000 6.90 0.00 37.40 4.40
2831 3032 2.423185 CGATTCTGGCTGCATTGGTTAA 59.577 45.455 0.50 0.00 0.00 2.01
2841 3042 1.148310 ACAAACGACGATTCTGGCTG 58.852 50.000 0.00 0.00 0.00 4.85
2843 3044 1.798813 AGAACAAACGACGATTCTGGC 59.201 47.619 0.00 0.00 30.26 4.85
2845 3046 5.388475 CCACTAAGAACAAACGACGATTCTG 60.388 44.000 0.00 0.00 31.82 3.02
2854 3055 3.676172 TGCGTATCCACTAAGAACAAACG 59.324 43.478 0.00 0.00 0.00 3.60
2855 3056 4.449743 TGTGCGTATCCACTAAGAACAAAC 59.550 41.667 0.00 0.00 36.68 2.93
2858 3059 3.945981 TGTGCGTATCCACTAAGAACA 57.054 42.857 0.00 0.00 36.68 3.18
2895 3101 2.931105 TGCCCGGCCCACTTAAGA 60.931 61.111 10.09 0.00 0.00 2.10
2910 3116 0.808755 CAAAATGGGTCGTAGGGTGC 59.191 55.000 0.00 0.00 0.00 5.01
2961 3169 7.249858 TGCAGCACACAGTTATAATTTACATG 58.750 34.615 0.00 0.00 0.00 3.21
2975 3183 7.479291 GCAATTTATTTTATTTGCAGCACACAG 59.521 33.333 0.00 0.00 43.00 3.66
3309 3551 3.552890 GCGATATGTAGTCATCAGGTGCA 60.553 47.826 0.00 0.00 35.70 4.57
3327 3569 1.269831 GCTAGGATTCGAACCAGCGAT 60.270 52.381 15.94 0.00 40.35 4.58
3375 3617 7.449934 AAAAGTGTTCATGCTTTAAGAAACG 57.550 32.000 0.00 0.00 34.26 3.60
3585 3860 3.385193 TCGTGAGTCATGCTTTCAGAA 57.615 42.857 7.52 0.00 0.00 3.02
3639 3923 8.465999 CCCTACATCATTTTGCAGTGTTATTTA 58.534 33.333 0.00 0.00 0.00 1.40
3658 3952 1.219213 AGCTAGCTGGAGACCCTACAT 59.781 52.381 18.57 0.00 0.00 2.29
3679 3975 6.305272 ACACTATATATCCATGAGGCCTTG 57.695 41.667 6.77 0.89 33.74 3.61
3728 4024 2.360165 GCCTAATCAATGCACCAAGAGG 59.640 50.000 0.00 0.00 42.21 3.69
3729 4025 3.018856 TGCCTAATCAATGCACCAAGAG 58.981 45.455 0.00 0.00 0.00 2.85
3756 4052 1.283793 CAAAGTGCAGCGTGGAAGG 59.716 57.895 0.00 0.00 0.00 3.46
3758 4054 2.192861 CCCAAAGTGCAGCGTGGAA 61.193 57.895 10.39 0.00 32.54 3.53
3763 4059 0.597568 TTTGATCCCAAAGTGCAGCG 59.402 50.000 0.00 0.00 37.36 5.18
3777 4075 0.180171 TGCGGACGATGGGATTTGAT 59.820 50.000 0.00 0.00 0.00 2.57
3783 4081 1.540267 AAAAATTGCGGACGATGGGA 58.460 45.000 0.00 0.00 0.00 4.37
3803 4101 3.005578 TGTCAGCAAGCAAATTATGTGCA 59.994 39.130 10.25 0.00 44.74 4.57
3804 4102 3.577667 TGTCAGCAAGCAAATTATGTGC 58.422 40.909 0.00 0.00 42.55 4.57
3805 4103 5.050644 TCTGTCAGCAAGCAAATTATGTG 57.949 39.130 0.00 0.00 0.00 3.21
3806 4104 5.393787 CCATCTGTCAGCAAGCAAATTATGT 60.394 40.000 0.00 0.00 0.00 2.29
3807 4105 5.041287 CCATCTGTCAGCAAGCAAATTATG 58.959 41.667 0.00 0.00 0.00 1.90
3808 4106 4.951715 TCCATCTGTCAGCAAGCAAATTAT 59.048 37.500 0.00 0.00 0.00 1.28
3809 4107 4.156556 GTCCATCTGTCAGCAAGCAAATTA 59.843 41.667 0.00 0.00 0.00 1.40
3810 4108 3.057033 GTCCATCTGTCAGCAAGCAAATT 60.057 43.478 0.00 0.00 0.00 1.82
3818 4116 3.200605 ACATATTGGTCCATCTGTCAGCA 59.799 43.478 0.00 0.00 0.00 4.41
3842 4141 2.795231 TCTCATGAAAAGGCCTCTGG 57.205 50.000 5.23 0.00 0.00 3.86
3855 4154 7.088589 ACCACTCGGATTAATTTTTCTCATG 57.911 36.000 0.00 0.00 35.59 3.07
3856 4155 7.703058 AACCACTCGGATTAATTTTTCTCAT 57.297 32.000 0.00 0.00 35.59 2.90
3866 4165 4.088056 TGTGGAAAACCACTCGGATTAA 57.912 40.909 18.10 0.00 40.92 1.40
3871 4170 3.726291 ATTTTGTGGAAAACCACTCGG 57.274 42.857 18.10 0.00 40.92 4.63
3872 4171 5.583495 TGTTATTTTGTGGAAAACCACTCG 58.417 37.500 18.10 0.00 40.92 4.18
3873 4172 6.019075 GCTTGTTATTTTGTGGAAAACCACTC 60.019 38.462 18.10 0.00 40.92 3.51
3875 4174 5.007234 GGCTTGTTATTTTGTGGAAAACCAC 59.993 40.000 11.82 11.82 40.73 4.16
3879 4178 5.582665 GTGTGGCTTGTTATTTTGTGGAAAA 59.417 36.000 0.00 0.00 35.52 2.29
3880 4179 5.112686 GTGTGGCTTGTTATTTTGTGGAAA 58.887 37.500 0.00 0.00 0.00 3.13
3883 4182 3.801594 GTGTGTGGCTTGTTATTTTGTGG 59.198 43.478 0.00 0.00 0.00 4.17
3896 4195 1.064003 TACAGATTGGGTGTGTGGCT 58.936 50.000 0.00 0.00 34.80 4.75
3920 4219 1.449246 GCCTGCTGTCAGCCACTAG 60.449 63.158 21.99 12.11 41.51 2.57
3942 4241 3.817653 TATACGGACACGGCATGGCAC 62.818 57.143 20.37 7.09 46.48 5.01
3948 4247 2.272678 CATTTGTATACGGACACGGCA 58.727 47.619 0.00 0.00 46.48 5.69
3949 4248 1.004292 GCATTTGTATACGGACACGGC 60.004 52.381 0.00 0.00 46.48 5.68
3989 4306 0.673437 GCTACAACTTGGCTTTGGCA 59.327 50.000 0.00 0.00 40.87 4.92
3991 4308 1.000274 GGTGCTACAACTTGGCTTTGG 60.000 52.381 0.00 0.00 0.00 3.28
4019 4336 4.034858 CAGTGCTAGAACTTGTGGCATATG 59.965 45.833 0.00 0.00 35.37 1.78
4020 4337 4.080919 TCAGTGCTAGAACTTGTGGCATAT 60.081 41.667 0.00 0.00 35.37 1.78
4027 4344 4.672587 TCACTTCAGTGCTAGAACTTGT 57.327 40.909 0.00 0.00 45.25 3.16
4028 4345 6.551385 AAATCACTTCAGTGCTAGAACTTG 57.449 37.500 0.00 0.00 45.25 3.16
4034 4351 5.050091 ACGTGAAAAATCACTTCAGTGCTAG 60.050 40.000 1.74 0.00 45.25 3.42
4042 4359 7.506296 AAAACTTGACGTGAAAAATCACTTC 57.494 32.000 0.00 8.11 38.75 3.01
4058 4375 3.290948 ACCACTGGTGCTAAAACTTGA 57.709 42.857 0.00 0.00 32.98 3.02
4099 4416 2.430694 CAGGTACAATGGGATCGACTGA 59.569 50.000 0.00 0.00 0.00 3.41
4153 4470 2.749621 GAGCTCGAACCCATTGTTGATT 59.250 45.455 0.00 0.00 37.29 2.57
4402 4719 3.607741 CAAGTCATCCAGCTCATTCTGT 58.392 45.455 0.00 0.00 32.32 3.41
4444 4761 1.713005 ATGGGTATCTGGCTGCCCTG 61.713 60.000 17.53 9.35 41.37 4.45
4459 4776 5.996513 CCTCTTGAATATGTCTCTGAATGGG 59.003 44.000 0.00 0.00 0.00 4.00
4469 4786 5.755861 GCCTGTACTTCCTCTTGAATATGTC 59.244 44.000 0.00 0.00 31.06 3.06
4511 4828 2.025887 GGCTGAAGAAAGGGATCAGGAA 60.026 50.000 0.00 0.00 40.68 3.36
4530 4847 2.615227 ATTGATCCCGGTGAGCTGGC 62.615 60.000 0.00 0.00 39.86 4.85
4588 4905 4.087892 GCGCTCTCCTTGAGGCCA 62.088 66.667 5.01 0.00 42.87 5.36
4618 4935 3.547249 GAGACGCGTGACCACCGAA 62.547 63.158 20.70 0.00 0.00 4.30
4667 4984 0.250727 CCAAACCTGTCGACCACCAT 60.251 55.000 14.12 0.00 0.00 3.55
4705 5022 3.784178 GATCATCTGGATCCCTCCTACA 58.216 50.000 9.90 0.00 45.58 2.74
4825 5142 0.175302 CAAAGCCTGCCACAAACACA 59.825 50.000 0.00 0.00 0.00 3.72
4858 5175 0.179097 GGACGAGGAATGTGAGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
4906 5223 1.378250 AATGCTCTGCCCTGCTGAC 60.378 57.895 0.00 0.00 33.27 3.51
4943 5260 1.061131 GCCGATCACAAACGTCATCAG 59.939 52.381 0.00 0.00 0.00 2.90
4978 5295 1.817099 CTTGATGCGGCAGAGGACC 60.817 63.158 9.25 0.00 0.00 4.46
5071 5388 1.012841 GCTCCATCGGAAGCTTCTTG 58.987 55.000 25.05 18.61 0.00 3.02
5098 5415 0.548682 AATGCCTCCTCCAGACCTGT 60.549 55.000 0.00 0.00 0.00 4.00
5192 5517 0.814410 CACTAGGAGCTCGGCGAGTA 60.814 60.000 34.41 19.48 31.39 2.59
5210 5535 6.148811 GGAAATACATTCAAGTTCGGAAGTCA 59.851 38.462 0.00 0.00 39.98 3.41
5217 5542 7.273381 GGTTTGATGGAAATACATTCAAGTTCG 59.727 37.037 0.00 0.00 39.98 3.95
5240 5565 5.830991 TGTACTATGTTTTTCCTTGCAGGTT 59.169 36.000 0.00 0.00 36.53 3.50
5442 5779 5.687780 TGATGCATAATCAGACAATCCAGT 58.312 37.500 0.00 0.00 40.50 4.00
5693 6031 2.436173 GGATTCTCCTTCGGGACAGATT 59.564 50.000 0.00 0.00 39.58 2.40
5716 6054 3.252215 TGTGGCAAGAACAAACGGATTAG 59.748 43.478 0.00 0.00 0.00 1.73
5772 6110 9.341078 TGACTGCTGCATGATTTTATTCTTATA 57.659 29.630 1.31 0.00 0.00 0.98
5882 6220 4.389374 TCAGTGTCTTCAGATTTTGTCCC 58.611 43.478 0.00 0.00 0.00 4.46
5924 6262 5.871524 TCTGCTCATTCTGTTCTACACAATC 59.128 40.000 0.00 0.00 33.87 2.67
5930 6268 4.122143 AGCTCTGCTCATTCTGTTCTAC 57.878 45.455 0.00 0.00 30.62 2.59
6005 6343 2.834549 CTGATCTCCAGGGTTGTACTGT 59.165 50.000 0.00 0.00 39.23 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.