Multiple sequence alignment - TraesCS1B01G232500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G232500 chr1B 100.000 3022 0 0 419 3440 418053094 418050073 0.000000e+00 5581.0
1 TraesCS1B01G232500 chr1B 100.000 167 0 0 1 167 418053512 418053346 3.330000e-80 309.0
2 TraesCS1B01G232500 chr1B 100.000 104 0 0 64 167 418052903 418053006 3.500000e-45 193.0
3 TraesCS1B01G232500 chr1B 100.000 104 0 0 507 610 418053346 418053449 3.500000e-45 193.0
4 TraesCS1B01G232500 chr1D 92.817 2882 112 32 611 3440 308425530 308422692 0.000000e+00 4087.0
5 TraesCS1B01G232500 chr1D 100.000 28 0 0 1773 1800 155785084 155785111 6.000000e-03 52.8
6 TraesCS1B01G232500 chr1A 91.266 2931 139 40 611 3440 387813778 387810864 0.000000e+00 3886.0
7 TraesCS1B01G232500 chr5B 93.820 178 11 0 434 611 420015284 420015107 5.660000e-68 268.0
8 TraesCS1B01G232500 chr5B 93.269 104 7 0 64 167 420015108 420015211 1.650000e-33 154.0
9 TraesCS1B01G232500 chr3B 92.265 181 11 1 434 611 763516627 763516807 1.580000e-63 254.0
10 TraesCS1B01G232500 chr3B 93.269 104 7 0 64 167 763516806 763516703 1.650000e-33 154.0
11 TraesCS1B01G232500 chr3B 100.000 29 0 0 1774 1802 669741692 669741664 2.000000e-03 54.7
12 TraesCS1B01G232500 chr5A 100.000 108 0 0 503 610 706561211 706561104 2.090000e-47 200.0
13 TraesCS1B01G232500 chr5A 100.000 104 0 0 64 167 706561104 706561207 3.500000e-45 193.0
14 TraesCS1B01G232500 chr5A 98.276 58 1 0 434 491 706561526 706561469 6.070000e-18 102.0
15 TraesCS1B01G232500 chr4B 92.929 99 7 0 64 162 588193958 588194056 9.950000e-31 145.0
16 TraesCS1B01G232500 chr4B 92.929 99 7 0 512 610 588194056 588193958 9.950000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G232500 chr1B 418050073 418053512 3439 True 2945 5581 100.000 1 3440 2 chr1B.!!$R1 3439
1 TraesCS1B01G232500 chr1D 308422692 308425530 2838 True 4087 4087 92.817 611 3440 1 chr1D.!!$R1 2829
2 TraesCS1B01G232500 chr1A 387810864 387813778 2914 True 3886 3886 91.266 611 3440 1 chr1A.!!$R1 2829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 949 0.036952 CAAAAGCAGAGAGGCTCGGA 60.037 55.0 9.22 0.0 45.07 4.55 F
2052 2092 1.101331 GGCCAAGAGAAGCAATCCAG 58.899 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2390 2430 0.179161 CGCGGACTTCTTGATCGACT 60.179 55.0 0.0 0.00 0.00 4.18 R
3299 3432 0.179121 AGACAGTGACGCGTCAACAA 60.179 50.0 40.6 18.38 41.85 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.818417 CGTTCGTTTCTGCGCAAT 57.182 50.000 13.05 0.00 0.00 3.56
20 21 2.613971 CGTTCGTTTCTGCGCAATC 58.386 52.632 13.05 0.93 0.00 2.67
21 22 0.789383 CGTTCGTTTCTGCGCAATCC 60.789 55.000 13.05 0.00 0.00 3.01
22 23 0.237235 GTTCGTTTCTGCGCAATCCA 59.763 50.000 13.05 0.00 0.00 3.41
23 24 0.947960 TTCGTTTCTGCGCAATCCAA 59.052 45.000 13.05 0.00 0.00 3.53
24 25 0.237235 TCGTTTCTGCGCAATCCAAC 59.763 50.000 13.05 10.76 0.00 3.77
25 26 0.729140 CGTTTCTGCGCAATCCAACC 60.729 55.000 13.05 0.00 0.00 3.77
26 27 0.598065 GTTTCTGCGCAATCCAACCT 59.402 50.000 13.05 0.00 0.00 3.50
27 28 0.597568 TTTCTGCGCAATCCAACCTG 59.402 50.000 13.05 0.00 0.00 4.00
28 29 0.250684 TTCTGCGCAATCCAACCTGA 60.251 50.000 13.05 0.00 0.00 3.86
29 30 0.674581 TCTGCGCAATCCAACCTGAG 60.675 55.000 13.05 0.00 0.00 3.35
30 31 0.674581 CTGCGCAATCCAACCTGAGA 60.675 55.000 13.05 0.00 0.00 3.27
31 32 0.674581 TGCGCAATCCAACCTGAGAG 60.675 55.000 8.16 0.00 0.00 3.20
32 33 0.391661 GCGCAATCCAACCTGAGAGA 60.392 55.000 0.30 0.00 0.00 3.10
33 34 1.363744 CGCAATCCAACCTGAGAGAC 58.636 55.000 0.00 0.00 0.00 3.36
34 35 1.066573 CGCAATCCAACCTGAGAGACT 60.067 52.381 0.00 0.00 0.00 3.24
35 36 2.626840 GCAATCCAACCTGAGAGACTC 58.373 52.381 0.00 0.00 0.00 3.36
36 37 2.235898 GCAATCCAACCTGAGAGACTCT 59.764 50.000 4.14 4.14 0.00 3.24
37 38 3.307339 GCAATCCAACCTGAGAGACTCTT 60.307 47.826 6.40 0.00 0.00 2.85
38 39 4.081420 GCAATCCAACCTGAGAGACTCTTA 60.081 45.833 6.40 1.01 0.00 2.10
39 40 5.569630 GCAATCCAACCTGAGAGACTCTTAA 60.570 44.000 6.40 0.00 0.00 1.85
40 41 5.930837 ATCCAACCTGAGAGACTCTTAAG 57.069 43.478 6.40 7.68 0.00 1.85
41 42 4.090090 TCCAACCTGAGAGACTCTTAAGG 58.910 47.826 23.91 23.91 36.94 2.69
42 43 4.090090 CCAACCTGAGAGACTCTTAAGGA 58.910 47.826 28.92 5.82 35.42 3.36
43 44 4.528596 CCAACCTGAGAGACTCTTAAGGAA 59.471 45.833 28.92 5.78 35.42 3.36
44 45 5.012148 CCAACCTGAGAGACTCTTAAGGAAA 59.988 44.000 28.92 4.41 35.42 3.13
45 46 5.993748 ACCTGAGAGACTCTTAAGGAAAG 57.006 43.478 28.92 12.30 35.42 2.62
46 47 4.775253 ACCTGAGAGACTCTTAAGGAAAGG 59.225 45.833 28.92 18.61 35.42 3.11
47 48 5.020132 CCTGAGAGACTCTTAAGGAAAGGA 58.980 45.833 22.28 0.00 34.39 3.36
48 49 5.482175 CCTGAGAGACTCTTAAGGAAAGGAA 59.518 44.000 22.28 0.00 34.39 3.36
49 50 6.156083 CCTGAGAGACTCTTAAGGAAAGGAAT 59.844 42.308 22.28 0.00 34.39 3.01
50 51 6.940739 TGAGAGACTCTTAAGGAAAGGAATG 58.059 40.000 6.40 0.00 35.75 2.67
51 52 6.498651 TGAGAGACTCTTAAGGAAAGGAATGT 59.501 38.462 6.40 0.00 35.75 2.71
52 53 7.674348 TGAGAGACTCTTAAGGAAAGGAATGTA 59.326 37.037 6.40 0.00 35.75 2.29
53 54 7.842982 AGAGACTCTTAAGGAAAGGAATGTAC 58.157 38.462 0.00 0.00 35.75 2.90
54 55 7.455008 AGAGACTCTTAAGGAAAGGAATGTACA 59.545 37.037 0.00 0.00 35.75 2.90
55 56 7.387643 AGACTCTTAAGGAAAGGAATGTACAC 58.612 38.462 0.00 0.00 35.75 2.90
56 57 6.164176 ACTCTTAAGGAAAGGAATGTACACG 58.836 40.000 0.00 0.00 35.75 4.49
57 58 5.484715 TCTTAAGGAAAGGAATGTACACGG 58.515 41.667 0.00 0.00 35.75 4.94
58 59 2.109425 AGGAAAGGAATGTACACGGC 57.891 50.000 0.00 0.00 0.00 5.68
59 60 1.349688 AGGAAAGGAATGTACACGGCA 59.650 47.619 0.00 0.00 0.00 5.69
60 61 2.026262 AGGAAAGGAATGTACACGGCAT 60.026 45.455 0.00 0.00 0.00 4.40
61 62 2.354821 GGAAAGGAATGTACACGGCATC 59.645 50.000 0.00 0.00 0.00 3.91
62 63 2.779755 AAGGAATGTACACGGCATCA 57.220 45.000 0.00 0.00 0.00 3.07
63 64 2.315925 AGGAATGTACACGGCATCAG 57.684 50.000 0.00 0.00 0.00 2.90
64 65 1.831106 AGGAATGTACACGGCATCAGA 59.169 47.619 0.00 0.00 0.00 3.27
65 66 2.159043 AGGAATGTACACGGCATCAGAG 60.159 50.000 0.00 0.00 0.00 3.35
66 67 1.594862 GAATGTACACGGCATCAGAGC 59.405 52.381 0.00 0.00 0.00 4.09
67 68 0.536724 ATGTACACGGCATCAGAGCA 59.463 50.000 0.00 0.00 35.83 4.26
68 69 0.320050 TGTACACGGCATCAGAGCAA 59.680 50.000 0.00 0.00 35.83 3.91
69 70 1.066215 TGTACACGGCATCAGAGCAAT 60.066 47.619 0.00 0.00 35.83 3.56
70 71 1.328680 GTACACGGCATCAGAGCAATG 59.671 52.381 0.00 0.00 35.83 2.82
71 72 1.063649 CACGGCATCAGAGCAATGC 59.936 57.895 0.00 0.00 46.98 3.56
72 73 1.077930 ACGGCATCAGAGCAATGCT 60.078 52.632 7.79 7.79 46.89 3.79
73 74 0.178767 ACGGCATCAGAGCAATGCTA 59.821 50.000 8.12 0.00 46.89 3.49
74 75 0.585357 CGGCATCAGAGCAATGCTAC 59.415 55.000 8.12 1.89 46.89 3.58
75 76 1.671979 GGCATCAGAGCAATGCTACA 58.328 50.000 8.12 0.00 46.89 2.74
76 77 1.332997 GGCATCAGAGCAATGCTACAC 59.667 52.381 8.12 0.00 46.89 2.90
77 78 1.004185 GCATCAGAGCAATGCTACACG 60.004 52.381 8.12 0.00 44.83 4.49
78 79 2.274437 CATCAGAGCAATGCTACACGT 58.726 47.619 8.12 0.00 39.88 4.49
79 80 3.447742 CATCAGAGCAATGCTACACGTA 58.552 45.455 8.12 0.00 39.88 3.57
80 81 2.876091 TCAGAGCAATGCTACACGTAC 58.124 47.619 8.12 0.00 39.88 3.67
81 82 1.583856 CAGAGCAATGCTACACGTACG 59.416 52.381 15.01 15.01 39.88 3.67
82 83 0.921347 GAGCAATGCTACACGTACGG 59.079 55.000 21.06 11.05 39.88 4.02
83 84 0.459585 AGCAATGCTACACGTACGGG 60.460 55.000 17.69 17.69 36.99 5.28
84 85 0.738412 GCAATGCTACACGTACGGGT 60.738 55.000 28.26 28.26 35.15 5.28
85 86 1.469595 GCAATGCTACACGTACGGGTA 60.470 52.381 27.43 27.43 32.06 3.69
86 87 2.878580 CAATGCTACACGTACGGGTAA 58.121 47.619 28.68 17.14 33.15 2.85
87 88 3.450578 CAATGCTACACGTACGGGTAAT 58.549 45.455 28.68 18.57 33.15 1.89
88 89 3.806625 ATGCTACACGTACGGGTAATT 57.193 42.857 28.68 14.80 33.15 1.40
89 90 4.916983 ATGCTACACGTACGGGTAATTA 57.083 40.909 28.68 18.42 33.15 1.40
90 91 4.027572 TGCTACACGTACGGGTAATTAC 57.972 45.455 28.68 18.78 33.15 1.89
91 92 3.035942 GCTACACGTACGGGTAATTACG 58.964 50.000 28.68 18.42 45.27 3.18
92 93 2.559998 ACACGTACGGGTAATTACGG 57.440 50.000 24.11 6.63 44.30 4.02
93 94 1.838913 CACGTACGGGTAATTACGGG 58.161 55.000 21.06 6.30 44.30 5.28
94 95 0.102300 ACGTACGGGTAATTACGGGC 59.898 55.000 21.06 0.00 44.30 6.13
95 96 0.102120 CGTACGGGTAATTACGGGCA 59.898 55.000 7.57 0.00 37.92 5.36
96 97 1.856802 GTACGGGTAATTACGGGCAG 58.143 55.000 9.46 0.01 0.00 4.85
97 98 1.408702 GTACGGGTAATTACGGGCAGA 59.591 52.381 9.46 0.00 0.00 4.26
98 99 0.462789 ACGGGTAATTACGGGCAGAG 59.537 55.000 9.46 0.00 0.00 3.35
99 100 0.748450 CGGGTAATTACGGGCAGAGA 59.252 55.000 9.46 0.00 0.00 3.10
100 101 1.343465 CGGGTAATTACGGGCAGAGAT 59.657 52.381 9.46 0.00 0.00 2.75
101 102 2.224209 CGGGTAATTACGGGCAGAGATT 60.224 50.000 9.46 0.00 0.00 2.40
102 103 3.006110 CGGGTAATTACGGGCAGAGATTA 59.994 47.826 9.46 0.00 0.00 1.75
103 104 4.501915 CGGGTAATTACGGGCAGAGATTAA 60.502 45.833 9.46 0.00 0.00 1.40
104 105 5.557866 GGGTAATTACGGGCAGAGATTAAT 58.442 41.667 9.46 0.00 0.00 1.40
105 106 6.002082 GGGTAATTACGGGCAGAGATTAATT 58.998 40.000 9.46 0.00 0.00 1.40
106 107 7.163441 GGGTAATTACGGGCAGAGATTAATTA 58.837 38.462 9.46 0.00 0.00 1.40
107 108 7.118825 GGGTAATTACGGGCAGAGATTAATTAC 59.881 40.741 9.46 14.47 41.10 1.89
108 109 7.658575 GGTAATTACGGGCAGAGATTAATTACA 59.341 37.037 19.76 0.00 42.34 2.41
109 110 7.730364 AATTACGGGCAGAGATTAATTACAG 57.270 36.000 0.00 0.00 0.00 2.74
110 111 4.073293 ACGGGCAGAGATTAATTACAGG 57.927 45.455 0.00 0.00 0.00 4.00
111 112 2.808543 CGGGCAGAGATTAATTACAGGC 59.191 50.000 0.00 0.00 0.00 4.85
112 113 3.495100 CGGGCAGAGATTAATTACAGGCT 60.495 47.826 0.00 0.00 0.00 4.58
113 114 3.817647 GGGCAGAGATTAATTACAGGCTG 59.182 47.826 14.16 14.16 0.00 4.85
114 115 4.444876 GGGCAGAGATTAATTACAGGCTGA 60.445 45.833 23.66 0.00 0.00 4.26
115 116 5.312079 GGCAGAGATTAATTACAGGCTGAT 58.688 41.667 23.66 8.18 0.00 2.90
116 117 5.767168 GGCAGAGATTAATTACAGGCTGATT 59.233 40.000 23.66 13.80 0.00 2.57
117 118 6.264067 GGCAGAGATTAATTACAGGCTGATTT 59.736 38.462 23.66 13.23 0.00 2.17
118 119 7.137426 GCAGAGATTAATTACAGGCTGATTTG 58.863 38.462 23.66 6.59 0.00 2.32
119 120 7.646314 CAGAGATTAATTACAGGCTGATTTGG 58.354 38.462 23.66 0.00 0.00 3.28
120 121 6.264067 AGAGATTAATTACAGGCTGATTTGGC 59.736 38.462 23.66 3.38 0.00 4.52
121 122 6.131961 AGATTAATTACAGGCTGATTTGGCT 58.868 36.000 23.66 5.67 43.92 4.75
122 123 6.608808 AGATTAATTACAGGCTGATTTGGCTT 59.391 34.615 23.66 6.93 41.04 4.35
123 124 7.779798 AGATTAATTACAGGCTGATTTGGCTTA 59.220 33.333 23.66 6.01 41.04 3.09
124 125 7.710676 TTAATTACAGGCTGATTTGGCTTAA 57.289 32.000 23.66 6.95 41.04 1.85
125 126 5.582689 ATTACAGGCTGATTTGGCTTAAC 57.417 39.130 23.66 0.00 41.04 2.01
126 127 2.875296 ACAGGCTGATTTGGCTTAACA 58.125 42.857 23.66 0.00 41.04 2.41
127 128 2.821969 ACAGGCTGATTTGGCTTAACAG 59.178 45.455 23.66 0.00 41.04 3.16
128 129 3.084039 CAGGCTGATTTGGCTTAACAGA 58.916 45.455 9.42 0.00 41.04 3.41
129 130 3.507233 CAGGCTGATTTGGCTTAACAGAA 59.493 43.478 9.42 0.00 41.04 3.02
130 131 4.159135 CAGGCTGATTTGGCTTAACAGAAT 59.841 41.667 9.42 0.00 41.04 2.40
131 132 4.774200 AGGCTGATTTGGCTTAACAGAATT 59.226 37.500 0.00 0.00 40.00 2.17
132 133 4.866486 GGCTGATTTGGCTTAACAGAATTG 59.134 41.667 0.00 0.00 0.00 2.32
133 134 4.866486 GCTGATTTGGCTTAACAGAATTGG 59.134 41.667 0.00 0.00 0.00 3.16
134 135 5.336690 GCTGATTTGGCTTAACAGAATTGGA 60.337 40.000 0.00 0.00 0.00 3.53
135 136 6.628844 GCTGATTTGGCTTAACAGAATTGGAT 60.629 38.462 0.00 0.00 0.00 3.41
136 137 7.416664 GCTGATTTGGCTTAACAGAATTGGATA 60.417 37.037 0.00 0.00 0.00 2.59
137 138 8.359875 TGATTTGGCTTAACAGAATTGGATAA 57.640 30.769 0.00 0.00 0.00 1.75
138 139 8.811017 TGATTTGGCTTAACAGAATTGGATAAA 58.189 29.630 0.00 0.00 0.00 1.40
139 140 9.651913 GATTTGGCTTAACAGAATTGGATAAAA 57.348 29.630 0.00 0.00 0.00 1.52
140 141 9.657419 ATTTGGCTTAACAGAATTGGATAAAAG 57.343 29.630 0.00 0.00 0.00 2.27
141 142 7.169158 TGGCTTAACAGAATTGGATAAAAGG 57.831 36.000 0.00 0.00 0.00 3.11
142 143 6.951198 TGGCTTAACAGAATTGGATAAAAGGA 59.049 34.615 0.00 0.00 0.00 3.36
143 144 7.122650 TGGCTTAACAGAATTGGATAAAAGGAG 59.877 37.037 0.00 0.00 0.00 3.69
144 145 7.339466 GGCTTAACAGAATTGGATAAAAGGAGA 59.661 37.037 0.00 0.00 0.00 3.71
145 146 8.401709 GCTTAACAGAATTGGATAAAAGGAGAG 58.598 37.037 0.00 0.00 0.00 3.20
146 147 9.454859 CTTAACAGAATTGGATAAAAGGAGAGT 57.545 33.333 0.00 0.00 0.00 3.24
147 148 7.693969 AACAGAATTGGATAAAAGGAGAGTG 57.306 36.000 0.00 0.00 0.00 3.51
148 149 7.020827 ACAGAATTGGATAAAAGGAGAGTGA 57.979 36.000 0.00 0.00 0.00 3.41
149 150 7.108847 ACAGAATTGGATAAAAGGAGAGTGAG 58.891 38.462 0.00 0.00 0.00 3.51
150 151 6.541641 CAGAATTGGATAAAAGGAGAGTGAGG 59.458 42.308 0.00 0.00 0.00 3.86
151 152 6.216456 AGAATTGGATAAAAGGAGAGTGAGGT 59.784 38.462 0.00 0.00 0.00 3.85
152 153 4.826274 TGGATAAAAGGAGAGTGAGGTG 57.174 45.455 0.00 0.00 0.00 4.00
153 154 3.519510 TGGATAAAAGGAGAGTGAGGTGG 59.480 47.826 0.00 0.00 0.00 4.61
154 155 3.118223 GGATAAAAGGAGAGTGAGGTGGG 60.118 52.174 0.00 0.00 0.00 4.61
155 156 2.118403 AAAAGGAGAGTGAGGTGGGA 57.882 50.000 0.00 0.00 0.00 4.37
156 157 1.353091 AAAGGAGAGTGAGGTGGGAC 58.647 55.000 0.00 0.00 0.00 4.46
157 158 0.545548 AAGGAGAGTGAGGTGGGACC 60.546 60.000 0.00 0.00 38.99 4.46
158 159 1.229209 GGAGAGTGAGGTGGGACCA 60.229 63.158 0.00 0.00 41.95 4.02
159 160 1.545706 GGAGAGTGAGGTGGGACCAC 61.546 65.000 13.03 13.03 41.95 4.16
439 440 4.073293 CTCCGTAAATGCCTGTAATCCT 57.927 45.455 0.00 0.00 0.00 3.24
440 441 5.209818 CTCCGTAAATGCCTGTAATCCTA 57.790 43.478 0.00 0.00 0.00 2.94
441 442 5.209818 TCCGTAAATGCCTGTAATCCTAG 57.790 43.478 0.00 0.00 0.00 3.02
442 443 4.897076 TCCGTAAATGCCTGTAATCCTAGA 59.103 41.667 0.00 0.00 0.00 2.43
443 444 4.989168 CCGTAAATGCCTGTAATCCTAGAC 59.011 45.833 0.00 0.00 0.00 2.59
444 445 4.680110 CGTAAATGCCTGTAATCCTAGACG 59.320 45.833 0.00 0.00 0.00 4.18
445 446 4.755266 AAATGCCTGTAATCCTAGACGT 57.245 40.909 0.00 0.00 0.00 4.34
446 447 5.864418 AAATGCCTGTAATCCTAGACGTA 57.136 39.130 0.00 0.00 0.00 3.57
447 448 4.850347 ATGCCTGTAATCCTAGACGTAC 57.150 45.455 0.00 0.00 0.00 3.67
448 449 3.623703 TGCCTGTAATCCTAGACGTACA 58.376 45.455 0.00 0.00 0.00 2.90
449 450 3.630769 TGCCTGTAATCCTAGACGTACAG 59.369 47.826 14.77 14.77 41.96 2.74
452 453 5.831702 CTGTAATCCTAGACGTACAGGTT 57.168 43.478 13.19 9.91 39.73 3.50
453 454 5.819059 CTGTAATCCTAGACGTACAGGTTC 58.181 45.833 13.19 5.25 39.73 3.62
454 455 5.503927 TGTAATCCTAGACGTACAGGTTCT 58.496 41.667 13.19 0.00 33.37 3.01
455 456 5.948162 TGTAATCCTAGACGTACAGGTTCTT 59.052 40.000 13.19 8.97 33.37 2.52
456 457 7.112122 TGTAATCCTAGACGTACAGGTTCTTA 58.888 38.462 13.19 8.25 33.37 2.10
457 458 6.448207 AATCCTAGACGTACAGGTTCTTAC 57.552 41.667 13.19 0.00 33.37 2.34
458 459 4.910195 TCCTAGACGTACAGGTTCTTACA 58.090 43.478 13.19 0.00 33.37 2.41
459 460 4.940046 TCCTAGACGTACAGGTTCTTACAG 59.060 45.833 13.19 0.00 33.37 2.74
460 461 4.096081 CCTAGACGTACAGGTTCTTACAGG 59.904 50.000 6.74 0.00 0.00 4.00
461 462 2.230750 AGACGTACAGGTTCTTACAGGC 59.769 50.000 0.00 0.00 0.00 4.85
462 463 1.965643 ACGTACAGGTTCTTACAGGCA 59.034 47.619 0.00 0.00 0.00 4.75
463 464 2.565834 ACGTACAGGTTCTTACAGGCAT 59.434 45.455 0.00 0.00 0.00 4.40
464 465 3.007614 ACGTACAGGTTCTTACAGGCATT 59.992 43.478 0.00 0.00 0.00 3.56
465 466 4.000988 CGTACAGGTTCTTACAGGCATTT 58.999 43.478 0.00 0.00 0.00 2.32
466 467 5.172934 CGTACAGGTTCTTACAGGCATTTA 58.827 41.667 0.00 0.00 0.00 1.40
467 468 5.063060 CGTACAGGTTCTTACAGGCATTTAC 59.937 44.000 0.00 0.00 0.00 2.01
468 469 4.000988 ACAGGTTCTTACAGGCATTTACG 58.999 43.478 0.00 0.00 0.00 3.18
469 470 3.374058 CAGGTTCTTACAGGCATTTACGG 59.626 47.826 0.00 0.00 0.00 4.02
470 471 3.262405 AGGTTCTTACAGGCATTTACGGA 59.738 43.478 0.00 0.00 0.00 4.69
471 472 3.621715 GGTTCTTACAGGCATTTACGGAG 59.378 47.826 0.00 0.00 0.00 4.63
472 473 2.901249 TCTTACAGGCATTTACGGAGC 58.099 47.619 0.00 0.00 0.00 4.70
478 479 0.738975 GGCATTTACGGAGCCTTTCC 59.261 55.000 0.00 0.00 44.92 3.13
479 480 1.682087 GGCATTTACGGAGCCTTTCCT 60.682 52.381 0.00 0.00 44.41 3.36
480 481 2.092323 GCATTTACGGAGCCTTTCCTT 58.908 47.619 0.00 0.00 44.41 3.36
481 482 3.275999 GCATTTACGGAGCCTTTCCTTA 58.724 45.455 0.00 0.00 44.41 2.69
482 483 3.692593 GCATTTACGGAGCCTTTCCTTAA 59.307 43.478 0.00 0.00 44.41 1.85
486 487 5.431179 TTACGGAGCCTTTCCTTAAATCT 57.569 39.130 0.00 0.00 44.41 2.40
487 488 3.875125 ACGGAGCCTTTCCTTAAATCTC 58.125 45.455 0.00 0.00 44.41 2.75
488 489 3.519913 ACGGAGCCTTTCCTTAAATCTCT 59.480 43.478 0.00 0.00 44.41 3.10
489 490 4.019231 ACGGAGCCTTTCCTTAAATCTCTT 60.019 41.667 0.00 0.00 44.41 2.85
490 491 4.572795 CGGAGCCTTTCCTTAAATCTCTTC 59.427 45.833 0.00 0.00 44.41 2.87
491 492 4.572795 GGAGCCTTTCCTTAAATCTCTTCG 59.427 45.833 0.00 0.00 43.16 3.79
492 493 3.942115 AGCCTTTCCTTAAATCTCTTCGC 59.058 43.478 0.00 0.00 0.00 4.70
493 494 3.065510 GCCTTTCCTTAAATCTCTTCGCC 59.934 47.826 0.00 0.00 0.00 5.54
494 495 3.628032 CCTTTCCTTAAATCTCTTCGCCC 59.372 47.826 0.00 0.00 0.00 6.13
495 496 3.277142 TTCCTTAAATCTCTTCGCCCC 57.723 47.619 0.00 0.00 0.00 5.80
496 497 1.489230 TCCTTAAATCTCTTCGCCCCC 59.511 52.381 0.00 0.00 0.00 5.40
511 512 1.837090 CCCCCTGATTTCTACCCGG 59.163 63.158 0.00 0.00 0.00 5.73
512 513 1.705997 CCCCCTGATTTCTACCCGGG 61.706 65.000 22.25 22.25 0.00 5.73
513 514 1.705997 CCCCTGATTTCTACCCGGGG 61.706 65.000 27.92 12.73 44.79 5.73
514 515 0.986550 CCCTGATTTCTACCCGGGGT 60.987 60.000 27.92 24.58 40.76 4.95
515 516 0.180406 CCTGATTTCTACCCGGGGTG 59.820 60.000 29.08 17.24 36.19 4.61
516 517 0.180406 CTGATTTCTACCCGGGGTGG 59.820 60.000 29.08 25.82 36.19 4.61
517 518 0.548197 TGATTTCTACCCGGGGTGGT 60.548 55.000 29.08 10.06 42.62 4.16
518 519 0.179702 GATTTCTACCCGGGGTGGTC 59.820 60.000 29.08 15.24 39.91 4.02
519 520 1.276859 ATTTCTACCCGGGGTGGTCC 61.277 60.000 29.08 0.00 39.91 4.46
530 531 4.217112 GTGGTCCCACCTCACTCT 57.783 61.111 5.08 0.00 39.58 3.24
531 532 1.976112 GTGGTCCCACCTCACTCTC 59.024 63.158 5.08 0.00 39.58 3.20
532 533 1.229209 TGGTCCCACCTCACTCTCC 60.229 63.158 0.00 0.00 39.58 3.71
533 534 1.079438 GGTCCCACCTCACTCTCCT 59.921 63.158 0.00 0.00 34.73 3.69
534 535 0.545548 GGTCCCACCTCACTCTCCTT 60.546 60.000 0.00 0.00 34.73 3.36
535 536 1.353091 GTCCCACCTCACTCTCCTTT 58.647 55.000 0.00 0.00 0.00 3.11
536 537 1.700186 GTCCCACCTCACTCTCCTTTT 59.300 52.381 0.00 0.00 0.00 2.27
537 538 2.904434 GTCCCACCTCACTCTCCTTTTA 59.096 50.000 0.00 0.00 0.00 1.52
538 539 3.519913 GTCCCACCTCACTCTCCTTTTAT 59.480 47.826 0.00 0.00 0.00 1.40
539 540 3.775316 TCCCACCTCACTCTCCTTTTATC 59.225 47.826 0.00 0.00 0.00 1.75
540 541 3.118223 CCCACCTCACTCTCCTTTTATCC 60.118 52.174 0.00 0.00 0.00 2.59
541 542 3.519510 CCACCTCACTCTCCTTTTATCCA 59.480 47.826 0.00 0.00 0.00 3.41
542 543 4.019321 CCACCTCACTCTCCTTTTATCCAA 60.019 45.833 0.00 0.00 0.00 3.53
543 544 5.339530 CCACCTCACTCTCCTTTTATCCAAT 60.340 44.000 0.00 0.00 0.00 3.16
544 545 6.183347 CACCTCACTCTCCTTTTATCCAATT 58.817 40.000 0.00 0.00 0.00 2.32
545 546 6.317391 CACCTCACTCTCCTTTTATCCAATTC 59.683 42.308 0.00 0.00 0.00 2.17
546 547 6.216456 ACCTCACTCTCCTTTTATCCAATTCT 59.784 38.462 0.00 0.00 0.00 2.40
547 548 6.541641 CCTCACTCTCCTTTTATCCAATTCTG 59.458 42.308 0.00 0.00 0.00 3.02
548 549 7.020827 TCACTCTCCTTTTATCCAATTCTGT 57.979 36.000 0.00 0.00 0.00 3.41
549 550 7.461749 TCACTCTCCTTTTATCCAATTCTGTT 58.538 34.615 0.00 0.00 0.00 3.16
550 551 8.602424 TCACTCTCCTTTTATCCAATTCTGTTA 58.398 33.333 0.00 0.00 0.00 2.41
551 552 9.231297 CACTCTCCTTTTATCCAATTCTGTTAA 57.769 33.333 0.00 0.00 0.00 2.01
552 553 9.454859 ACTCTCCTTTTATCCAATTCTGTTAAG 57.545 33.333 0.00 0.00 0.00 1.85
553 554 8.281212 TCTCCTTTTATCCAATTCTGTTAAGC 57.719 34.615 0.00 0.00 0.00 3.09
554 555 7.339466 TCTCCTTTTATCCAATTCTGTTAAGCC 59.661 37.037 0.00 0.00 0.00 4.35
555 556 6.951198 TCCTTTTATCCAATTCTGTTAAGCCA 59.049 34.615 0.00 0.00 0.00 4.75
556 557 7.453126 TCCTTTTATCCAATTCTGTTAAGCCAA 59.547 33.333 0.00 0.00 0.00 4.52
557 558 8.093927 CCTTTTATCCAATTCTGTTAAGCCAAA 58.906 33.333 0.00 0.00 0.00 3.28
558 559 9.657419 CTTTTATCCAATTCTGTTAAGCCAAAT 57.343 29.630 0.00 0.00 0.00 2.32
559 560 9.651913 TTTTATCCAATTCTGTTAAGCCAAATC 57.348 29.630 0.00 0.00 0.00 2.17
560 561 6.855763 ATCCAATTCTGTTAAGCCAAATCA 57.144 33.333 0.00 0.00 0.00 2.57
561 562 6.271488 TCCAATTCTGTTAAGCCAAATCAG 57.729 37.500 0.00 0.00 0.00 2.90
562 563 4.866486 CCAATTCTGTTAAGCCAAATCAGC 59.134 41.667 0.00 0.00 0.00 4.26
563 564 4.725790 ATTCTGTTAAGCCAAATCAGCC 57.274 40.909 0.00 0.00 0.00 4.85
564 565 3.439857 TCTGTTAAGCCAAATCAGCCT 57.560 42.857 0.00 0.00 0.00 4.58
565 566 3.084039 TCTGTTAAGCCAAATCAGCCTG 58.916 45.455 0.00 0.00 0.00 4.85
566 567 2.821969 CTGTTAAGCCAAATCAGCCTGT 59.178 45.455 0.00 0.00 0.00 4.00
567 568 4.009675 CTGTTAAGCCAAATCAGCCTGTA 58.990 43.478 0.00 0.00 0.00 2.74
568 569 4.402829 TGTTAAGCCAAATCAGCCTGTAA 58.597 39.130 0.00 0.00 0.00 2.41
569 570 5.016173 TGTTAAGCCAAATCAGCCTGTAAT 58.984 37.500 0.00 0.00 0.00 1.89
570 571 5.480073 TGTTAAGCCAAATCAGCCTGTAATT 59.520 36.000 0.00 0.00 0.00 1.40
571 572 6.661377 TGTTAAGCCAAATCAGCCTGTAATTA 59.339 34.615 0.00 0.00 0.00 1.40
572 573 7.177568 TGTTAAGCCAAATCAGCCTGTAATTAA 59.822 33.333 0.00 0.00 0.00 1.40
573 574 6.796785 AAGCCAAATCAGCCTGTAATTAAT 57.203 33.333 0.00 0.00 0.00 1.40
574 575 6.396829 AGCCAAATCAGCCTGTAATTAATC 57.603 37.500 0.00 0.00 0.00 1.75
575 576 6.131961 AGCCAAATCAGCCTGTAATTAATCT 58.868 36.000 0.00 0.00 0.00 2.40
576 577 6.264067 AGCCAAATCAGCCTGTAATTAATCTC 59.736 38.462 0.00 0.00 0.00 2.75
577 578 6.264067 GCCAAATCAGCCTGTAATTAATCTCT 59.736 38.462 0.00 0.00 0.00 3.10
578 579 7.646314 CCAAATCAGCCTGTAATTAATCTCTG 58.354 38.462 0.00 0.00 0.00 3.35
579 580 6.874288 AATCAGCCTGTAATTAATCTCTGC 57.126 37.500 0.00 0.00 0.00 4.26
580 581 4.708177 TCAGCCTGTAATTAATCTCTGCC 58.292 43.478 0.00 0.00 0.00 4.85
581 582 3.817647 CAGCCTGTAATTAATCTCTGCCC 59.182 47.826 0.00 0.00 0.00 5.36
582 583 2.808543 GCCTGTAATTAATCTCTGCCCG 59.191 50.000 0.00 0.00 0.00 6.13
583 584 3.744530 GCCTGTAATTAATCTCTGCCCGT 60.745 47.826 0.00 0.00 0.00 5.28
584 585 4.502604 GCCTGTAATTAATCTCTGCCCGTA 60.503 45.833 0.00 0.00 0.00 4.02
585 586 5.607477 CCTGTAATTAATCTCTGCCCGTAA 58.393 41.667 0.00 0.00 0.00 3.18
586 587 6.231211 CCTGTAATTAATCTCTGCCCGTAAT 58.769 40.000 0.00 0.00 0.00 1.89
587 588 6.710744 CCTGTAATTAATCTCTGCCCGTAATT 59.289 38.462 0.00 0.00 0.00 1.40
588 589 7.876068 CCTGTAATTAATCTCTGCCCGTAATTA 59.124 37.037 0.00 0.00 0.00 1.40
589 590 8.597662 TGTAATTAATCTCTGCCCGTAATTAC 57.402 34.615 5.47 5.47 42.54 1.89
590 591 7.658575 TGTAATTAATCTCTGCCCGTAATTACC 59.341 37.037 10.01 0.00 42.05 2.85
591 592 3.487120 AATCTCTGCCCGTAATTACCC 57.513 47.619 10.01 0.04 0.00 3.69
592 593 0.748450 TCTCTGCCCGTAATTACCCG 59.252 55.000 10.01 0.00 0.00 5.28
593 594 0.462789 CTCTGCCCGTAATTACCCGT 59.537 55.000 10.01 0.00 0.00 5.28
594 595 1.682854 CTCTGCCCGTAATTACCCGTA 59.317 52.381 10.01 0.00 0.00 4.02
595 596 1.408702 TCTGCCCGTAATTACCCGTAC 59.591 52.381 10.01 0.00 0.00 3.67
596 597 0.102120 TGCCCGTAATTACCCGTACG 59.898 55.000 8.69 8.69 42.10 3.67
597 598 0.102300 GCCCGTAATTACCCGTACGT 59.898 55.000 15.21 0.00 41.13 3.57
598 599 1.838913 CCCGTAATTACCCGTACGTG 58.161 55.000 15.21 5.13 41.13 4.49
599 600 1.134175 CCCGTAATTACCCGTACGTGT 59.866 52.381 15.21 11.95 41.13 4.49
600 601 2.356382 CCCGTAATTACCCGTACGTGTA 59.644 50.000 15.21 10.77 41.13 2.90
601 602 3.548014 CCCGTAATTACCCGTACGTGTAG 60.548 52.174 15.21 1.03 41.13 2.74
602 603 3.035942 CGTAATTACCCGTACGTGTAGC 58.964 50.000 15.21 4.54 38.58 3.58
603 604 3.486708 CGTAATTACCCGTACGTGTAGCA 60.487 47.826 15.21 0.00 38.58 3.49
604 605 3.806625 AATTACCCGTACGTGTAGCAT 57.193 42.857 15.21 1.94 0.00 3.79
605 606 3.806625 ATTACCCGTACGTGTAGCATT 57.193 42.857 15.21 0.00 0.00 3.56
606 607 2.565210 TACCCGTACGTGTAGCATTG 57.435 50.000 15.21 0.00 0.00 2.82
607 608 0.738412 ACCCGTACGTGTAGCATTGC 60.738 55.000 15.21 0.00 0.00 3.56
608 609 0.459585 CCCGTACGTGTAGCATTGCT 60.460 55.000 16.63 16.63 43.41 3.91
609 610 0.921347 CCGTACGTGTAGCATTGCTC 59.079 55.000 15.81 7.72 40.44 4.26
650 651 2.821546 CGTAGATTCGCCAATGGAAGA 58.178 47.619 2.05 0.00 0.00 2.87
806 811 5.856126 GATCGATCGATCTCAACTCTAGT 57.144 43.478 38.45 13.89 45.42 2.57
807 812 5.605564 ATCGATCGATCTCAACTCTAGTG 57.394 43.478 24.60 3.30 0.00 2.74
823 828 2.435410 TGAGTCATGGCAGCAGCG 60.435 61.111 0.00 0.00 43.41 5.18
869 881 4.342352 AAAGCGAGCGAAAGGAATTTAG 57.658 40.909 0.00 0.00 0.00 1.85
899 913 2.356313 CACCACGAGCTCGCAACT 60.356 61.111 34.83 13.89 44.43 3.16
931 949 0.036952 CAAAAGCAGAGAGGCTCGGA 60.037 55.000 9.22 0.00 45.07 4.55
1200 1219 2.811317 CACCTGCTCTTCGTCGGC 60.811 66.667 0.00 0.00 0.00 5.54
1302 1324 1.712018 CGGACGCGAGGTATGTCTCA 61.712 60.000 15.93 0.00 33.59 3.27
1348 1370 1.226575 GACGATGATGGCGACGACA 60.227 57.895 5.51 5.51 0.00 4.35
1467 1489 1.971167 GAATCACACCGCAGCCCAA 60.971 57.895 0.00 0.00 0.00 4.12
1597 1619 3.833645 CTTCGCCGATCCCGTGGA 61.834 66.667 0.00 0.00 35.55 4.02
1628 1650 2.338984 GAGGTTCGACGCACCACT 59.661 61.111 18.86 0.00 36.67 4.00
1647 1669 4.390556 ACTCCGAGCAGCCCCTCT 62.391 66.667 0.00 0.00 0.00 3.69
1661 1683 2.697761 CCTCTCCGTCGCCGAAGAA 61.698 63.158 0.45 0.00 35.63 2.52
1707 1729 2.753029 GAGACACTGGCCAAGGCT 59.247 61.111 12.88 12.88 41.60 4.58
1813 1835 3.411351 CGCCGTTCCTTGTCCACG 61.411 66.667 0.00 0.00 0.00 4.94
1908 1930 1.133513 AGAGGCAGAGGAGATCACGAT 60.134 52.381 0.00 0.00 0.00 3.73
2045 2085 1.831580 ACAATCAGGCCAAGAGAAGC 58.168 50.000 5.01 0.00 0.00 3.86
2052 2092 1.101331 GGCCAAGAGAAGCAATCCAG 58.899 55.000 0.00 0.00 0.00 3.86
2061 2101 3.701040 GAGAAGCAATCCAGCCCAAAATA 59.299 43.478 0.00 0.00 34.23 1.40
2355 2395 2.586357 GCGGAGGAGTTCATCGCC 60.586 66.667 0.00 0.00 40.44 5.54
2390 2430 3.473647 CAGGCTGCAGGGGATCGA 61.474 66.667 17.12 0.00 0.00 3.59
2394 2434 2.415010 CTGCAGGGGATCGAGTCG 59.585 66.667 5.57 6.09 0.00 4.18
2464 2504 2.360600 AGCTCGACTGGCTCGTCT 60.361 61.111 0.00 0.00 43.45 4.18
2471 2511 4.803426 CTGGCTCGTCTCCGGTGC 62.803 72.222 0.00 0.00 34.75 5.01
2535 2575 4.303086 TCGGTGAACTAGTAGCTAATGC 57.697 45.455 3.45 0.00 40.05 3.56
2589 2634 5.441500 TCAAGAACCACCTGTAAACATTCA 58.558 37.500 0.00 0.00 0.00 2.57
2741 2796 2.203480 TTTGCCCCAGTGACTGCC 60.203 61.111 7.16 0.00 0.00 4.85
2756 2811 0.179134 CTGCCGGAGTAGCACTGTAC 60.179 60.000 5.05 0.00 36.01 2.90
2810 2866 7.540474 TCTCTATTTGGTCAGTAGTTCAGTT 57.460 36.000 0.00 0.00 0.00 3.16
2811 2867 7.378966 TCTCTATTTGGTCAGTAGTTCAGTTG 58.621 38.462 0.00 0.00 0.00 3.16
2812 2868 7.232737 TCTCTATTTGGTCAGTAGTTCAGTTGA 59.767 37.037 0.00 0.00 0.00 3.18
2900 2960 5.601662 TCTTTATCTCGCCGAATGAATTCT 58.398 37.500 7.05 0.00 34.69 2.40
2941 3001 4.770010 GGTGGTCCAAAATTATCCAGTTGA 59.230 41.667 0.00 0.00 0.00 3.18
2951 3019 2.936919 ATCCAGTTGAGTTCACTGCA 57.063 45.000 0.00 0.00 0.00 4.41
2972 3063 8.303876 ACTGCAATCGACCTGTAATTAATTTTT 58.696 29.630 5.91 0.00 0.00 1.94
2973 3064 9.781834 CTGCAATCGACCTGTAATTAATTTTTA 57.218 29.630 5.91 0.00 0.00 1.52
2974 3065 9.781834 TGCAATCGACCTGTAATTAATTTTTAG 57.218 29.630 5.91 3.02 0.00 1.85
2975 3066 9.783256 GCAATCGACCTGTAATTAATTTTTAGT 57.217 29.630 5.91 0.03 0.00 2.24
3041 3132 2.479049 CGTACCCGATTCACTGATTCGT 60.479 50.000 17.66 6.98 34.83 3.85
3046 3137 2.993220 CCGATTCACTGATTCGTCACAA 59.007 45.455 17.66 0.00 34.83 3.33
3062 3157 1.032014 ACAAACTGCGCACCAGATTT 58.968 45.000 5.66 0.00 44.64 2.17
3072 3167 3.365220 GCGCACCAGATTTATCGAGATAC 59.635 47.826 0.30 0.00 0.00 2.24
3092 3187 9.979578 GAGATACAAGAATGACTCATGTTCTAT 57.020 33.333 0.00 0.00 37.22 1.98
3242 3375 4.956700 AGTATGGCAGCTAGTAGAAGTTGA 59.043 41.667 0.00 0.00 29.89 3.18
3243 3376 3.876274 TGGCAGCTAGTAGAAGTTGAG 57.124 47.619 0.00 0.00 29.89 3.02
3244 3377 3.165875 TGGCAGCTAGTAGAAGTTGAGT 58.834 45.455 0.00 0.00 29.89 3.41
3245 3378 4.341487 TGGCAGCTAGTAGAAGTTGAGTA 58.659 43.478 0.00 0.00 29.89 2.59
3246 3379 4.158025 TGGCAGCTAGTAGAAGTTGAGTAC 59.842 45.833 0.00 0.00 29.89 2.73
3247 3380 4.399934 GGCAGCTAGTAGAAGTTGAGTACT 59.600 45.833 0.00 0.00 39.32 2.73
3285 3418 1.896660 TTGGGACTTGGAAGCACGC 60.897 57.895 0.00 0.00 0.00 5.34
3335 3468 6.813649 TCACTGTCTAAGTATGCATCTGTTTC 59.186 38.462 0.19 0.00 36.83 2.78
3339 3472 2.401583 AGTATGCATCTGTTTCGGCA 57.598 45.000 0.19 0.00 41.00 5.69
3381 3514 1.136147 CATGCTGAAACTGCTCCGC 59.864 57.895 0.00 0.00 0.00 5.54
3420 3556 5.357878 TCTGAACTTTGAAACAACATCTGCT 59.642 36.000 0.00 0.00 0.00 4.24
3433 3569 6.003950 ACAACATCTGCTAGCCTTTCTTTAA 58.996 36.000 13.29 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.789383 GGATTGCGCAGAAACGAACG 60.789 55.000 11.31 0.00 34.06 3.95
3 4 0.237235 TGGATTGCGCAGAAACGAAC 59.763 50.000 11.31 0.00 34.06 3.95
4 5 0.947960 TTGGATTGCGCAGAAACGAA 59.052 45.000 11.31 4.49 34.06 3.85
5 6 0.237235 GTTGGATTGCGCAGAAACGA 59.763 50.000 11.31 0.00 34.06 3.85
6 7 0.729140 GGTTGGATTGCGCAGAAACG 60.729 55.000 11.31 0.00 0.00 3.60
7 8 0.598065 AGGTTGGATTGCGCAGAAAC 59.402 50.000 11.31 13.38 0.00 2.78
8 9 0.597568 CAGGTTGGATTGCGCAGAAA 59.402 50.000 11.31 0.00 0.00 2.52
9 10 0.250684 TCAGGTTGGATTGCGCAGAA 60.251 50.000 11.31 0.00 0.00 3.02
10 11 0.674581 CTCAGGTTGGATTGCGCAGA 60.675 55.000 11.31 1.94 0.00 4.26
11 12 0.674581 TCTCAGGTTGGATTGCGCAG 60.675 55.000 11.31 0.00 0.00 5.18
12 13 0.674581 CTCTCAGGTTGGATTGCGCA 60.675 55.000 5.66 5.66 0.00 6.09
13 14 0.391661 TCTCTCAGGTTGGATTGCGC 60.392 55.000 0.00 0.00 0.00 6.09
14 15 1.066573 AGTCTCTCAGGTTGGATTGCG 60.067 52.381 0.00 0.00 0.00 4.85
15 16 2.235898 AGAGTCTCTCAGGTTGGATTGC 59.764 50.000 0.00 0.00 32.06 3.56
16 17 4.550076 AAGAGTCTCTCAGGTTGGATTG 57.450 45.455 1.96 0.00 32.06 2.67
17 18 5.188751 CCTTAAGAGTCTCTCAGGTTGGATT 59.811 44.000 15.76 0.00 32.06 3.01
18 19 4.714308 CCTTAAGAGTCTCTCAGGTTGGAT 59.286 45.833 15.76 0.00 32.06 3.41
19 20 4.090090 CCTTAAGAGTCTCTCAGGTTGGA 58.910 47.826 15.76 0.00 32.06 3.53
20 21 4.090090 TCCTTAAGAGTCTCTCAGGTTGG 58.910 47.826 20.43 10.85 31.79 3.77
21 22 5.730296 TTCCTTAAGAGTCTCTCAGGTTG 57.270 43.478 20.43 3.85 31.79 3.77
22 23 5.247337 CCTTTCCTTAAGAGTCTCTCAGGTT 59.753 44.000 20.43 2.91 35.80 3.50
23 24 4.775253 CCTTTCCTTAAGAGTCTCTCAGGT 59.225 45.833 20.43 3.23 35.80 4.00
24 25 5.020132 TCCTTTCCTTAAGAGTCTCTCAGG 58.980 45.833 17.15 17.15 35.80 3.86
25 26 6.597832 TTCCTTTCCTTAAGAGTCTCTCAG 57.402 41.667 3.36 2.61 35.80 3.35
26 27 6.498651 ACATTCCTTTCCTTAAGAGTCTCTCA 59.501 38.462 3.36 0.00 35.80 3.27
27 28 6.941857 ACATTCCTTTCCTTAAGAGTCTCTC 58.058 40.000 3.36 0.00 35.80 3.20
28 29 6.943899 ACATTCCTTTCCTTAAGAGTCTCT 57.056 37.500 3.36 0.00 35.80 3.10
29 30 7.546316 GTGTACATTCCTTTCCTTAAGAGTCTC 59.454 40.741 3.36 0.00 35.80 3.36
30 31 7.387643 GTGTACATTCCTTTCCTTAAGAGTCT 58.612 38.462 3.36 0.00 35.80 3.24
31 32 6.310711 CGTGTACATTCCTTTCCTTAAGAGTC 59.689 42.308 3.36 0.00 35.80 3.36
32 33 6.164176 CGTGTACATTCCTTTCCTTAAGAGT 58.836 40.000 3.36 0.00 35.80 3.24
33 34 5.581085 CCGTGTACATTCCTTTCCTTAAGAG 59.419 44.000 3.36 0.00 35.80 2.85
34 35 5.484715 CCGTGTACATTCCTTTCCTTAAGA 58.515 41.667 3.36 0.00 35.80 2.10
35 36 4.094442 GCCGTGTACATTCCTTTCCTTAAG 59.906 45.833 0.00 0.00 0.00 1.85
36 37 4.004982 GCCGTGTACATTCCTTTCCTTAA 58.995 43.478 0.00 0.00 0.00 1.85
37 38 3.008157 TGCCGTGTACATTCCTTTCCTTA 59.992 43.478 0.00 0.00 0.00 2.69
38 39 2.224670 TGCCGTGTACATTCCTTTCCTT 60.225 45.455 0.00 0.00 0.00 3.36
39 40 1.349688 TGCCGTGTACATTCCTTTCCT 59.650 47.619 0.00 0.00 0.00 3.36
40 41 1.816074 TGCCGTGTACATTCCTTTCC 58.184 50.000 0.00 0.00 0.00 3.13
41 42 3.006940 TGATGCCGTGTACATTCCTTTC 58.993 45.455 0.00 0.00 0.00 2.62
42 43 3.009723 CTGATGCCGTGTACATTCCTTT 58.990 45.455 0.00 0.00 0.00 3.11
43 44 2.236146 TCTGATGCCGTGTACATTCCTT 59.764 45.455 0.00 0.00 0.00 3.36
44 45 1.831106 TCTGATGCCGTGTACATTCCT 59.169 47.619 0.00 0.00 0.00 3.36
45 46 2.205074 CTCTGATGCCGTGTACATTCC 58.795 52.381 0.00 0.00 0.00 3.01
46 47 1.594862 GCTCTGATGCCGTGTACATTC 59.405 52.381 0.00 0.00 0.00 2.67
47 48 1.066215 TGCTCTGATGCCGTGTACATT 60.066 47.619 0.00 0.00 0.00 2.71
48 49 0.536724 TGCTCTGATGCCGTGTACAT 59.463 50.000 0.00 0.00 0.00 2.29
49 50 0.320050 TTGCTCTGATGCCGTGTACA 59.680 50.000 0.00 0.00 0.00 2.90
50 51 1.328680 CATTGCTCTGATGCCGTGTAC 59.671 52.381 0.00 0.00 0.00 2.90
51 52 1.655484 CATTGCTCTGATGCCGTGTA 58.345 50.000 0.00 0.00 0.00 2.90
52 53 1.651240 GCATTGCTCTGATGCCGTGT 61.651 55.000 0.16 0.00 43.10 4.49
53 54 1.063649 GCATTGCTCTGATGCCGTG 59.936 57.895 0.16 0.00 43.10 4.94
54 55 3.506108 GCATTGCTCTGATGCCGT 58.494 55.556 0.16 0.00 43.10 5.68
58 59 2.274437 ACGTGTAGCATTGCTCTGATG 58.726 47.619 15.81 8.11 40.44 3.07
59 60 2.680312 ACGTGTAGCATTGCTCTGAT 57.320 45.000 15.81 0.00 40.44 2.90
60 61 2.731027 CGTACGTGTAGCATTGCTCTGA 60.731 50.000 15.81 0.00 40.44 3.27
61 62 1.583856 CGTACGTGTAGCATTGCTCTG 59.416 52.381 15.81 6.15 40.44 3.35
62 63 1.469251 CCGTACGTGTAGCATTGCTCT 60.469 52.381 15.81 0.00 40.44 4.09
63 64 0.921347 CCGTACGTGTAGCATTGCTC 59.079 55.000 15.81 7.72 40.44 4.26
64 65 0.459585 CCCGTACGTGTAGCATTGCT 60.460 55.000 16.63 16.63 43.41 3.91
65 66 0.738412 ACCCGTACGTGTAGCATTGC 60.738 55.000 15.21 0.00 0.00 3.56
66 67 2.565210 TACCCGTACGTGTAGCATTG 57.435 50.000 15.21 0.00 0.00 2.82
67 68 3.806625 ATTACCCGTACGTGTAGCATT 57.193 42.857 15.21 0.00 0.00 3.56
68 69 3.806625 AATTACCCGTACGTGTAGCAT 57.193 42.857 15.21 1.94 0.00 3.79
69 70 3.486708 CGTAATTACCCGTACGTGTAGCA 60.487 47.826 15.21 0.00 38.58 3.49
70 71 3.035942 CGTAATTACCCGTACGTGTAGC 58.964 50.000 15.21 4.54 38.58 3.58
71 72 3.548014 CCCGTAATTACCCGTACGTGTAG 60.548 52.174 15.21 1.03 41.13 2.74
72 73 2.356382 CCCGTAATTACCCGTACGTGTA 59.644 50.000 15.21 10.77 41.13 2.90
73 74 1.134175 CCCGTAATTACCCGTACGTGT 59.866 52.381 15.21 11.95 41.13 4.49
74 75 1.838913 CCCGTAATTACCCGTACGTG 58.161 55.000 15.21 5.13 41.13 4.49
75 76 0.102300 GCCCGTAATTACCCGTACGT 59.898 55.000 15.21 0.00 41.13 3.57
76 77 0.102120 TGCCCGTAATTACCCGTACG 59.898 55.000 8.69 8.69 42.10 3.67
77 78 1.408702 TCTGCCCGTAATTACCCGTAC 59.591 52.381 10.01 0.00 0.00 3.67
78 79 1.682854 CTCTGCCCGTAATTACCCGTA 59.317 52.381 10.01 0.00 0.00 4.02
79 80 0.462789 CTCTGCCCGTAATTACCCGT 59.537 55.000 10.01 0.00 0.00 5.28
80 81 0.748450 TCTCTGCCCGTAATTACCCG 59.252 55.000 10.01 0.00 0.00 5.28
81 82 3.487120 AATCTCTGCCCGTAATTACCC 57.513 47.619 10.01 0.04 0.00 3.69
82 83 7.658575 TGTAATTAATCTCTGCCCGTAATTACC 59.341 37.037 10.01 0.00 42.05 2.85
83 84 8.597662 TGTAATTAATCTCTGCCCGTAATTAC 57.402 34.615 5.47 5.47 42.54 1.89
84 85 7.876068 CCTGTAATTAATCTCTGCCCGTAATTA 59.124 37.037 0.00 0.00 0.00 1.40
85 86 6.710744 CCTGTAATTAATCTCTGCCCGTAATT 59.289 38.462 0.00 0.00 0.00 1.40
86 87 6.231211 CCTGTAATTAATCTCTGCCCGTAAT 58.769 40.000 0.00 0.00 0.00 1.89
87 88 5.607477 CCTGTAATTAATCTCTGCCCGTAA 58.393 41.667 0.00 0.00 0.00 3.18
88 89 4.502604 GCCTGTAATTAATCTCTGCCCGTA 60.503 45.833 0.00 0.00 0.00 4.02
89 90 3.744530 GCCTGTAATTAATCTCTGCCCGT 60.745 47.826 0.00 0.00 0.00 5.28
90 91 2.808543 GCCTGTAATTAATCTCTGCCCG 59.191 50.000 0.00 0.00 0.00 6.13
91 92 3.817647 CAGCCTGTAATTAATCTCTGCCC 59.182 47.826 0.00 0.00 0.00 5.36
92 93 4.708177 TCAGCCTGTAATTAATCTCTGCC 58.292 43.478 0.00 0.00 0.00 4.85
93 94 6.874288 AATCAGCCTGTAATTAATCTCTGC 57.126 37.500 0.00 0.00 0.00 4.26
94 95 7.646314 CCAAATCAGCCTGTAATTAATCTCTG 58.354 38.462 0.00 0.00 0.00 3.35
95 96 6.264067 GCCAAATCAGCCTGTAATTAATCTCT 59.736 38.462 0.00 0.00 0.00 3.10
96 97 6.264067 AGCCAAATCAGCCTGTAATTAATCTC 59.736 38.462 0.00 0.00 0.00 2.75
97 98 6.131961 AGCCAAATCAGCCTGTAATTAATCT 58.868 36.000 0.00 0.00 0.00 2.40
98 99 6.396829 AGCCAAATCAGCCTGTAATTAATC 57.603 37.500 0.00 0.00 0.00 1.75
99 100 6.796785 AAGCCAAATCAGCCTGTAATTAAT 57.203 33.333 0.00 0.00 0.00 1.40
100 101 7.177568 TGTTAAGCCAAATCAGCCTGTAATTAA 59.822 33.333 0.00 0.00 0.00 1.40
101 102 6.661377 TGTTAAGCCAAATCAGCCTGTAATTA 59.339 34.615 0.00 0.00 0.00 1.40
102 103 5.480073 TGTTAAGCCAAATCAGCCTGTAATT 59.520 36.000 0.00 0.00 0.00 1.40
103 104 5.016173 TGTTAAGCCAAATCAGCCTGTAAT 58.984 37.500 0.00 0.00 0.00 1.89
104 105 4.402829 TGTTAAGCCAAATCAGCCTGTAA 58.597 39.130 0.00 0.00 0.00 2.41
105 106 4.009675 CTGTTAAGCCAAATCAGCCTGTA 58.990 43.478 0.00 0.00 0.00 2.74
106 107 2.821969 CTGTTAAGCCAAATCAGCCTGT 59.178 45.455 0.00 0.00 0.00 4.00
107 108 3.084039 TCTGTTAAGCCAAATCAGCCTG 58.916 45.455 0.00 0.00 0.00 4.85
108 109 3.439857 TCTGTTAAGCCAAATCAGCCT 57.560 42.857 0.00 0.00 0.00 4.58
109 110 4.725790 ATTCTGTTAAGCCAAATCAGCC 57.274 40.909 0.00 0.00 0.00 4.85
110 111 4.866486 CCAATTCTGTTAAGCCAAATCAGC 59.134 41.667 0.00 0.00 0.00 4.26
111 112 6.271488 TCCAATTCTGTTAAGCCAAATCAG 57.729 37.500 0.00 0.00 0.00 2.90
112 113 6.855763 ATCCAATTCTGTTAAGCCAAATCA 57.144 33.333 0.00 0.00 0.00 2.57
113 114 9.651913 TTTTATCCAATTCTGTTAAGCCAAATC 57.348 29.630 0.00 0.00 0.00 2.17
114 115 9.657419 CTTTTATCCAATTCTGTTAAGCCAAAT 57.343 29.630 0.00 0.00 0.00 2.32
115 116 8.093927 CCTTTTATCCAATTCTGTTAAGCCAAA 58.906 33.333 0.00 0.00 0.00 3.28
116 117 7.453126 TCCTTTTATCCAATTCTGTTAAGCCAA 59.547 33.333 0.00 0.00 0.00 4.52
117 118 6.951198 TCCTTTTATCCAATTCTGTTAAGCCA 59.049 34.615 0.00 0.00 0.00 4.75
118 119 7.339466 TCTCCTTTTATCCAATTCTGTTAAGCC 59.661 37.037 0.00 0.00 0.00 4.35
119 120 8.281212 TCTCCTTTTATCCAATTCTGTTAAGC 57.719 34.615 0.00 0.00 0.00 3.09
120 121 9.454859 ACTCTCCTTTTATCCAATTCTGTTAAG 57.545 33.333 0.00 0.00 0.00 1.85
121 122 9.231297 CACTCTCCTTTTATCCAATTCTGTTAA 57.769 33.333 0.00 0.00 0.00 2.01
122 123 8.602424 TCACTCTCCTTTTATCCAATTCTGTTA 58.398 33.333 0.00 0.00 0.00 2.41
123 124 7.461749 TCACTCTCCTTTTATCCAATTCTGTT 58.538 34.615 0.00 0.00 0.00 3.16
124 125 7.020827 TCACTCTCCTTTTATCCAATTCTGT 57.979 36.000 0.00 0.00 0.00 3.41
125 126 6.541641 CCTCACTCTCCTTTTATCCAATTCTG 59.458 42.308 0.00 0.00 0.00 3.02
126 127 6.216456 ACCTCACTCTCCTTTTATCCAATTCT 59.784 38.462 0.00 0.00 0.00 2.40
127 128 6.317391 CACCTCACTCTCCTTTTATCCAATTC 59.683 42.308 0.00 0.00 0.00 2.17
128 129 6.183347 CACCTCACTCTCCTTTTATCCAATT 58.817 40.000 0.00 0.00 0.00 2.32
129 130 5.339530 CCACCTCACTCTCCTTTTATCCAAT 60.340 44.000 0.00 0.00 0.00 3.16
130 131 4.019321 CCACCTCACTCTCCTTTTATCCAA 60.019 45.833 0.00 0.00 0.00 3.53
131 132 3.519510 CCACCTCACTCTCCTTTTATCCA 59.480 47.826 0.00 0.00 0.00 3.41
132 133 3.118223 CCCACCTCACTCTCCTTTTATCC 60.118 52.174 0.00 0.00 0.00 2.59
133 134 3.775316 TCCCACCTCACTCTCCTTTTATC 59.225 47.826 0.00 0.00 0.00 1.75
134 135 3.519913 GTCCCACCTCACTCTCCTTTTAT 59.480 47.826 0.00 0.00 0.00 1.40
135 136 2.904434 GTCCCACCTCACTCTCCTTTTA 59.096 50.000 0.00 0.00 0.00 1.52
136 137 1.700186 GTCCCACCTCACTCTCCTTTT 59.300 52.381 0.00 0.00 0.00 2.27
137 138 1.353091 GTCCCACCTCACTCTCCTTT 58.647 55.000 0.00 0.00 0.00 3.11
138 139 0.545548 GGTCCCACCTCACTCTCCTT 60.546 60.000 0.00 0.00 34.73 3.36
139 140 1.079438 GGTCCCACCTCACTCTCCT 59.921 63.158 0.00 0.00 34.73 3.69
140 141 1.229209 TGGTCCCACCTCACTCTCC 60.229 63.158 0.00 0.00 39.58 3.71
141 142 1.976112 GTGGTCCCACCTCACTCTC 59.024 63.158 5.08 0.00 39.58 3.20
142 143 4.217112 GTGGTCCCACCTCACTCT 57.783 61.111 5.08 0.00 39.58 3.24
418 419 4.073293 AGGATTACAGGCATTTACGGAG 57.927 45.455 0.00 0.00 0.00 4.63
419 420 4.897076 TCTAGGATTACAGGCATTTACGGA 59.103 41.667 0.00 0.00 0.00 4.69
420 421 4.989168 GTCTAGGATTACAGGCATTTACGG 59.011 45.833 0.00 0.00 0.00 4.02
421 422 4.680110 CGTCTAGGATTACAGGCATTTACG 59.320 45.833 0.00 0.00 0.00 3.18
422 423 5.598769 ACGTCTAGGATTACAGGCATTTAC 58.401 41.667 0.00 0.00 0.00 2.01
423 424 5.864418 ACGTCTAGGATTACAGGCATTTA 57.136 39.130 0.00 0.00 0.00 1.40
424 425 4.755266 ACGTCTAGGATTACAGGCATTT 57.245 40.909 0.00 0.00 0.00 2.32
425 426 4.647853 TGTACGTCTAGGATTACAGGCATT 59.352 41.667 0.00 0.00 0.00 3.56
426 427 4.212716 TGTACGTCTAGGATTACAGGCAT 58.787 43.478 0.00 0.00 0.00 4.40
427 428 3.623703 TGTACGTCTAGGATTACAGGCA 58.376 45.455 0.00 0.00 0.00 4.75
428 429 4.226113 CTGTACGTCTAGGATTACAGGC 57.774 50.000 13.57 0.00 38.41 4.85
430 431 5.589452 AGAACCTGTACGTCTAGGATTACAG 59.411 44.000 21.07 13.02 40.70 2.74
431 432 5.503927 AGAACCTGTACGTCTAGGATTACA 58.496 41.667 21.07 4.41 37.52 2.41
432 433 6.448207 AAGAACCTGTACGTCTAGGATTAC 57.552 41.667 21.07 10.71 37.52 1.89
433 434 7.112122 TGTAAGAACCTGTACGTCTAGGATTA 58.888 38.462 21.07 14.08 37.52 1.75
434 435 5.948162 TGTAAGAACCTGTACGTCTAGGATT 59.052 40.000 21.07 14.82 37.52 3.01
435 436 5.503927 TGTAAGAACCTGTACGTCTAGGAT 58.496 41.667 21.07 11.74 37.52 3.24
436 437 4.910195 TGTAAGAACCTGTACGTCTAGGA 58.090 43.478 21.07 0.00 37.52 2.94
437 438 4.096081 CCTGTAAGAACCTGTACGTCTAGG 59.904 50.000 14.56 14.56 36.61 3.02
438 439 4.438472 GCCTGTAAGAACCTGTACGTCTAG 60.438 50.000 0.00 0.00 34.07 2.43
439 440 3.441572 GCCTGTAAGAACCTGTACGTCTA 59.558 47.826 0.00 0.00 34.07 2.59
440 441 2.230750 GCCTGTAAGAACCTGTACGTCT 59.769 50.000 0.00 0.00 34.07 4.18
441 442 2.029649 TGCCTGTAAGAACCTGTACGTC 60.030 50.000 0.00 0.00 34.07 4.34
442 443 1.965643 TGCCTGTAAGAACCTGTACGT 59.034 47.619 0.00 0.00 34.07 3.57
443 444 2.736144 TGCCTGTAAGAACCTGTACG 57.264 50.000 0.00 0.00 34.07 3.67
444 445 5.063060 CGTAAATGCCTGTAAGAACCTGTAC 59.937 44.000 0.00 0.00 34.07 2.90
445 446 5.172934 CGTAAATGCCTGTAAGAACCTGTA 58.827 41.667 0.00 0.00 34.07 2.74
446 447 4.000988 CGTAAATGCCTGTAAGAACCTGT 58.999 43.478 0.00 0.00 34.07 4.00
447 448 3.374058 CCGTAAATGCCTGTAAGAACCTG 59.626 47.826 0.00 0.00 34.07 4.00
448 449 3.262405 TCCGTAAATGCCTGTAAGAACCT 59.738 43.478 0.00 0.00 34.07 3.50
449 450 3.602483 TCCGTAAATGCCTGTAAGAACC 58.398 45.455 0.00 0.00 34.07 3.62
450 451 3.063588 GCTCCGTAAATGCCTGTAAGAAC 59.936 47.826 0.00 0.00 34.07 3.01
451 452 3.267483 GCTCCGTAAATGCCTGTAAGAA 58.733 45.455 0.00 0.00 34.07 2.52
452 453 2.419574 GGCTCCGTAAATGCCTGTAAGA 60.420 50.000 0.00 0.00 43.05 2.10
453 454 1.940613 GGCTCCGTAAATGCCTGTAAG 59.059 52.381 0.00 0.00 43.05 2.34
454 455 2.032680 GGCTCCGTAAATGCCTGTAA 57.967 50.000 0.00 0.00 43.05 2.41
455 456 3.772619 GGCTCCGTAAATGCCTGTA 57.227 52.632 0.00 0.00 43.05 2.74
456 457 4.637771 GGCTCCGTAAATGCCTGT 57.362 55.556 0.00 0.00 43.05 4.00
459 460 0.738975 GGAAAGGCTCCGTAAATGCC 59.261 55.000 0.00 0.00 46.42 4.40
460 461 4.157105 TTTAAGGAAAGGCTCCGTAAATGC 59.843 41.667 8.96 0.00 46.77 3.56
461 462 5.890424 TTTAAGGAAAGGCTCCGTAAATG 57.110 39.130 8.96 0.00 46.77 2.32
468 469 4.572795 CGAAGAGATTTAAGGAAAGGCTCC 59.427 45.833 0.00 0.00 45.81 4.70
469 470 4.034626 GCGAAGAGATTTAAGGAAAGGCTC 59.965 45.833 0.00 0.00 33.38 4.70
470 471 3.942115 GCGAAGAGATTTAAGGAAAGGCT 59.058 43.478 0.00 0.00 0.00 4.58
471 472 3.065510 GGCGAAGAGATTTAAGGAAAGGC 59.934 47.826 0.00 0.00 0.00 4.35
472 473 3.628032 GGGCGAAGAGATTTAAGGAAAGG 59.372 47.826 0.00 0.00 0.00 3.11
473 474 3.628032 GGGGCGAAGAGATTTAAGGAAAG 59.372 47.826 0.00 0.00 0.00 2.62
474 475 3.617284 GGGGCGAAGAGATTTAAGGAAA 58.383 45.455 0.00 0.00 0.00 3.13
475 476 2.092592 GGGGGCGAAGAGATTTAAGGAA 60.093 50.000 0.00 0.00 0.00 3.36
476 477 1.489230 GGGGGCGAAGAGATTTAAGGA 59.511 52.381 0.00 0.00 0.00 3.36
477 478 1.968704 GGGGGCGAAGAGATTTAAGG 58.031 55.000 0.00 0.00 0.00 2.69
493 494 1.705997 CCCGGGTAGAAATCAGGGGG 61.706 65.000 14.18 0.00 35.36 5.40
494 495 1.837090 CCCGGGTAGAAATCAGGGG 59.163 63.158 14.18 0.00 35.36 4.79
495 496 0.986550 ACCCCGGGTAGAAATCAGGG 60.987 60.000 21.85 0.95 39.09 4.45
496 497 0.180406 CACCCCGGGTAGAAATCAGG 59.820 60.000 21.85 1.55 32.11 3.86
497 498 0.180406 CCACCCCGGGTAGAAATCAG 59.820 60.000 21.85 2.41 32.11 2.90
498 499 0.548197 ACCACCCCGGGTAGAAATCA 60.548 55.000 21.85 0.00 40.07 2.57
499 500 0.179702 GACCACCCCGGGTAGAAATC 59.820 60.000 21.85 5.32 42.53 2.17
500 501 1.276859 GGACCACCCCGGGTAGAAAT 61.277 60.000 21.85 0.00 42.53 2.17
501 502 1.919816 GGACCACCCCGGGTAGAAA 60.920 63.158 21.85 0.00 42.53 2.52
502 503 2.284847 GGACCACCCCGGGTAGAA 60.285 66.667 21.85 0.00 42.53 2.10
513 514 1.545706 GGAGAGTGAGGTGGGACCAC 61.546 65.000 13.03 13.03 41.95 4.16
514 515 1.229209 GGAGAGTGAGGTGGGACCA 60.229 63.158 0.00 0.00 41.95 4.02
515 516 0.545548 AAGGAGAGTGAGGTGGGACC 60.546 60.000 0.00 0.00 38.99 4.46
516 517 1.353091 AAAGGAGAGTGAGGTGGGAC 58.647 55.000 0.00 0.00 0.00 4.46
517 518 2.118403 AAAAGGAGAGTGAGGTGGGA 57.882 50.000 0.00 0.00 0.00 4.37
518 519 3.118223 GGATAAAAGGAGAGTGAGGTGGG 60.118 52.174 0.00 0.00 0.00 4.61
519 520 3.519510 TGGATAAAAGGAGAGTGAGGTGG 59.480 47.826 0.00 0.00 0.00 4.61
520 521 4.826274 TGGATAAAAGGAGAGTGAGGTG 57.174 45.455 0.00 0.00 0.00 4.00
521 522 6.216456 AGAATTGGATAAAAGGAGAGTGAGGT 59.784 38.462 0.00 0.00 0.00 3.85
522 523 6.541641 CAGAATTGGATAAAAGGAGAGTGAGG 59.458 42.308 0.00 0.00 0.00 3.86
523 524 7.108847 ACAGAATTGGATAAAAGGAGAGTGAG 58.891 38.462 0.00 0.00 0.00 3.51
524 525 7.020827 ACAGAATTGGATAAAAGGAGAGTGA 57.979 36.000 0.00 0.00 0.00 3.41
525 526 7.693969 AACAGAATTGGATAAAAGGAGAGTG 57.306 36.000 0.00 0.00 0.00 3.51
526 527 9.454859 CTTAACAGAATTGGATAAAAGGAGAGT 57.545 33.333 0.00 0.00 0.00 3.24
527 528 8.401709 GCTTAACAGAATTGGATAAAAGGAGAG 58.598 37.037 0.00 0.00 0.00 3.20
528 529 7.339466 GGCTTAACAGAATTGGATAAAAGGAGA 59.661 37.037 0.00 0.00 0.00 3.71
529 530 7.122650 TGGCTTAACAGAATTGGATAAAAGGAG 59.877 37.037 0.00 0.00 0.00 3.69
530 531 6.951198 TGGCTTAACAGAATTGGATAAAAGGA 59.049 34.615 0.00 0.00 0.00 3.36
531 532 7.169158 TGGCTTAACAGAATTGGATAAAAGG 57.831 36.000 0.00 0.00 0.00 3.11
532 533 9.657419 ATTTGGCTTAACAGAATTGGATAAAAG 57.343 29.630 0.00 0.00 0.00 2.27
533 534 9.651913 GATTTGGCTTAACAGAATTGGATAAAA 57.348 29.630 0.00 0.00 0.00 1.52
534 535 8.811017 TGATTTGGCTTAACAGAATTGGATAAA 58.189 29.630 0.00 0.00 0.00 1.40
535 536 8.359875 TGATTTGGCTTAACAGAATTGGATAA 57.640 30.769 0.00 0.00 0.00 1.75
536 537 7.416664 GCTGATTTGGCTTAACAGAATTGGATA 60.417 37.037 0.00 0.00 0.00 2.59
537 538 6.628844 GCTGATTTGGCTTAACAGAATTGGAT 60.629 38.462 0.00 0.00 0.00 3.41
538 539 5.336690 GCTGATTTGGCTTAACAGAATTGGA 60.337 40.000 0.00 0.00 0.00 3.53
539 540 4.866486 GCTGATTTGGCTTAACAGAATTGG 59.134 41.667 0.00 0.00 0.00 3.16
540 541 4.866486 GGCTGATTTGGCTTAACAGAATTG 59.134 41.667 0.00 0.00 0.00 2.32
541 542 4.774200 AGGCTGATTTGGCTTAACAGAATT 59.226 37.500 0.00 0.00 40.00 2.17
542 543 4.159135 CAGGCTGATTTGGCTTAACAGAAT 59.841 41.667 9.42 0.00 41.04 2.40
543 544 3.507233 CAGGCTGATTTGGCTTAACAGAA 59.493 43.478 9.42 0.00 41.04 3.02
544 545 3.084039 CAGGCTGATTTGGCTTAACAGA 58.916 45.455 9.42 0.00 41.04 3.41
545 546 2.821969 ACAGGCTGATTTGGCTTAACAG 59.178 45.455 23.66 0.00 41.04 3.16
546 547 2.875296 ACAGGCTGATTTGGCTTAACA 58.125 42.857 23.66 0.00 41.04 2.41
547 548 5.582689 ATTACAGGCTGATTTGGCTTAAC 57.417 39.130 23.66 0.00 41.04 2.01
548 549 7.710676 TTAATTACAGGCTGATTTGGCTTAA 57.289 32.000 23.66 6.95 41.04 1.85
549 550 7.779798 AGATTAATTACAGGCTGATTTGGCTTA 59.220 33.333 23.66 6.01 41.04 3.09
550 551 6.608808 AGATTAATTACAGGCTGATTTGGCTT 59.391 34.615 23.66 6.93 41.04 4.35
551 552 6.131961 AGATTAATTACAGGCTGATTTGGCT 58.868 36.000 23.66 5.67 43.92 4.75
552 553 6.264067 AGAGATTAATTACAGGCTGATTTGGC 59.736 38.462 23.66 3.38 0.00 4.52
553 554 7.646314 CAGAGATTAATTACAGGCTGATTTGG 58.354 38.462 23.66 0.00 0.00 3.28
554 555 7.137426 GCAGAGATTAATTACAGGCTGATTTG 58.863 38.462 23.66 6.59 0.00 2.32
555 556 6.264067 GGCAGAGATTAATTACAGGCTGATTT 59.736 38.462 23.66 13.23 0.00 2.17
556 557 5.767168 GGCAGAGATTAATTACAGGCTGATT 59.233 40.000 23.66 13.80 0.00 2.57
557 558 5.312079 GGCAGAGATTAATTACAGGCTGAT 58.688 41.667 23.66 8.18 0.00 2.90
558 559 4.444876 GGGCAGAGATTAATTACAGGCTGA 60.445 45.833 23.66 0.00 0.00 4.26
559 560 3.817647 GGGCAGAGATTAATTACAGGCTG 59.182 47.826 14.16 14.16 0.00 4.85
560 561 3.495100 CGGGCAGAGATTAATTACAGGCT 60.495 47.826 0.00 0.00 0.00 4.58
561 562 2.808543 CGGGCAGAGATTAATTACAGGC 59.191 50.000 0.00 0.00 0.00 4.85
562 563 4.073293 ACGGGCAGAGATTAATTACAGG 57.927 45.455 0.00 0.00 0.00 4.00
563 564 7.730364 AATTACGGGCAGAGATTAATTACAG 57.270 36.000 0.00 0.00 0.00 2.74
564 565 7.658575 GGTAATTACGGGCAGAGATTAATTACA 59.341 37.037 19.76 0.00 42.34 2.41
565 566 7.118825 GGGTAATTACGGGCAGAGATTAATTAC 59.881 40.741 9.46 14.47 41.10 1.89
566 567 7.163441 GGGTAATTACGGGCAGAGATTAATTA 58.837 38.462 9.46 0.00 0.00 1.40
567 568 6.002082 GGGTAATTACGGGCAGAGATTAATT 58.998 40.000 9.46 0.00 0.00 1.40
568 569 5.557866 GGGTAATTACGGGCAGAGATTAAT 58.442 41.667 9.46 0.00 0.00 1.40
569 570 4.501915 CGGGTAATTACGGGCAGAGATTAA 60.502 45.833 9.46 0.00 0.00 1.40
570 571 3.006110 CGGGTAATTACGGGCAGAGATTA 59.994 47.826 9.46 0.00 0.00 1.75
571 572 2.224209 CGGGTAATTACGGGCAGAGATT 60.224 50.000 9.46 0.00 0.00 2.40
572 573 1.343465 CGGGTAATTACGGGCAGAGAT 59.657 52.381 9.46 0.00 0.00 2.75
573 574 0.748450 CGGGTAATTACGGGCAGAGA 59.252 55.000 9.46 0.00 0.00 3.10
574 575 0.462789 ACGGGTAATTACGGGCAGAG 59.537 55.000 9.46 0.00 0.00 3.35
575 576 1.408702 GTACGGGTAATTACGGGCAGA 59.591 52.381 9.46 0.00 0.00 4.26
576 577 1.856802 GTACGGGTAATTACGGGCAG 58.143 55.000 9.46 0.01 0.00 4.85
577 578 0.102120 CGTACGGGTAATTACGGGCA 59.898 55.000 7.57 0.00 37.92 5.36
578 579 0.102300 ACGTACGGGTAATTACGGGC 59.898 55.000 21.06 0.00 44.30 6.13
579 580 1.838913 CACGTACGGGTAATTACGGG 58.161 55.000 21.06 6.30 44.30 5.28
580 581 2.559998 ACACGTACGGGTAATTACGG 57.440 50.000 24.11 6.63 44.30 4.02
581 582 3.035942 GCTACACGTACGGGTAATTACG 58.964 50.000 28.68 18.42 45.27 3.18
582 583 4.027572 TGCTACACGTACGGGTAATTAC 57.972 45.455 28.68 18.78 33.15 1.89
583 584 4.916983 ATGCTACACGTACGGGTAATTA 57.083 40.909 28.68 18.42 33.15 1.40
584 585 3.806625 ATGCTACACGTACGGGTAATT 57.193 42.857 28.68 14.80 33.15 1.40
585 586 3.450578 CAATGCTACACGTACGGGTAAT 58.549 45.455 28.68 18.57 33.15 1.89
586 587 2.878580 CAATGCTACACGTACGGGTAA 58.121 47.619 28.68 17.14 33.15 2.85
587 588 1.469595 GCAATGCTACACGTACGGGTA 60.470 52.381 27.43 27.43 32.06 3.69
588 589 0.738412 GCAATGCTACACGTACGGGT 60.738 55.000 28.26 28.26 35.15 5.28
589 590 0.459585 AGCAATGCTACACGTACGGG 60.460 55.000 17.69 17.69 36.99 5.28
590 591 0.921347 GAGCAATGCTACACGTACGG 59.079 55.000 21.06 11.05 39.88 4.02
591 592 0.921347 GGAGCAATGCTACACGTACG 59.079 55.000 13.46 15.01 39.71 3.67
592 593 0.921347 CGGAGCAATGCTACACGTAC 59.079 55.000 18.59 0.00 39.98 3.67
593 594 0.179121 CCGGAGCAATGCTACACGTA 60.179 55.000 18.59 0.00 39.98 3.57
594 595 1.447838 CCGGAGCAATGCTACACGT 60.448 57.895 18.59 0.00 39.98 4.49
595 596 2.813179 GCCGGAGCAATGCTACACG 61.813 63.158 18.59 17.13 39.98 4.49
596 597 3.102097 GCCGGAGCAATGCTACAC 58.898 61.111 18.59 4.93 39.98 2.90
606 607 1.070445 ACTAGCATGATGCCGGAGC 59.930 57.895 14.72 0.00 46.52 4.70
607 608 0.602106 CCACTAGCATGATGCCGGAG 60.602 60.000 14.72 11.52 46.52 4.63
608 609 1.337384 ACCACTAGCATGATGCCGGA 61.337 55.000 14.72 0.00 46.52 5.14
609 610 0.392706 TACCACTAGCATGATGCCGG 59.607 55.000 14.72 12.02 46.52 6.13
633 634 2.739932 CGACTCTTCCATTGGCGAATCT 60.740 50.000 0.00 0.00 0.00 2.40
650 651 1.605058 CGTGTCCAGGGGAATCGACT 61.605 60.000 0.00 0.00 34.07 4.18
766 767 2.591571 TCGAGATGGCATCTTCTGTG 57.408 50.000 29.35 16.93 40.38 3.66
805 810 2.747822 CGCTGCTGCCATGACTCAC 61.748 63.158 10.24 0.00 35.36 3.51
806 811 2.435410 CGCTGCTGCCATGACTCA 60.435 61.111 10.24 0.00 35.36 3.41
807 812 3.200593 CCGCTGCTGCCATGACTC 61.201 66.667 10.24 0.00 35.36 3.36
899 913 1.137086 TGCTTTTGGCGCCAAGTAAAA 59.863 42.857 37.88 28.29 45.43 1.52
931 949 2.607038 CGCGCCCTTTAAAGCTTTTTCT 60.607 45.455 18.47 0.00 0.00 2.52
1302 1324 3.000819 TCGCCCTGGAACATCCGT 61.001 61.111 0.00 0.00 40.17 4.69
1451 1473 2.672996 GTTGGGCTGCGGTGTGAT 60.673 61.111 0.00 0.00 0.00 3.06
1452 1474 4.182433 TGTTGGGCTGCGGTGTGA 62.182 61.111 0.00 0.00 0.00 3.58
1569 1591 3.766691 GGCGAAGGGAGCACGGTA 61.767 66.667 0.00 0.00 36.08 4.02
1628 1650 4.704103 AGGGGCTGCTCGGAGTCA 62.704 66.667 6.90 4.59 0.00 3.41
1908 1930 3.254060 GAAACTCTGCTGCGAGTAATGA 58.746 45.455 21.17 1.12 43.14 2.57
1968 1999 1.336887 CCGTCGAAAGAGCTTCTTGGA 60.337 52.381 0.00 0.00 43.49 3.53
2045 2085 5.047092 ACTTCTTGTATTTTGGGCTGGATTG 60.047 40.000 0.00 0.00 0.00 2.67
2052 2092 2.562738 AGGCACTTCTTGTATTTTGGGC 59.437 45.455 0.00 0.00 27.25 5.36
2061 2101 1.412710 TCTTCGTCAGGCACTTCTTGT 59.587 47.619 0.00 0.00 34.60 3.16
2355 2395 2.159071 CCTGATCTGCTCTCTGAACCTG 60.159 54.545 0.00 0.00 0.00 4.00
2390 2430 0.179161 CGCGGACTTCTTGATCGACT 60.179 55.000 0.00 0.00 0.00 4.18
2394 2434 1.515954 TCCCGCGGACTTCTTGATC 59.484 57.895 30.73 0.00 0.00 2.92
2535 2575 7.139896 AGCGATGTAGTATGTTATCTCTGAG 57.860 40.000 0.00 0.00 0.00 3.35
2589 2634 8.324306 CAATACACTCCCATTCATCACCTATAT 58.676 37.037 0.00 0.00 0.00 0.86
2741 2796 2.093106 AGAAGGTACAGTGCTACTCCG 58.907 52.381 0.00 0.00 0.00 4.63
2756 2811 2.551071 GGTGGTCAGTTGGAGAAGAAGG 60.551 54.545 0.00 0.00 0.00 3.46
2810 2866 2.771089 CTGCTGTAAAGGTGAGCTTCA 58.229 47.619 0.00 0.00 33.66 3.02
2811 2867 1.466558 GCTGCTGTAAAGGTGAGCTTC 59.533 52.381 0.00 0.00 33.66 3.86
2812 2868 1.202806 TGCTGCTGTAAAGGTGAGCTT 60.203 47.619 0.00 0.00 33.66 3.74
2900 2960 0.546122 CCCATCCAAACGAGGGATCA 59.454 55.000 0.00 0.00 45.86 2.92
2941 3001 1.070758 ACAGGTCGATTGCAGTGAACT 59.929 47.619 0.00 0.00 0.00 3.01
2972 3063 7.482113 CGATTACAACAACAACAACAACAACTA 59.518 33.333 0.00 0.00 0.00 2.24
2973 3064 6.306837 CGATTACAACAACAACAACAACAACT 59.693 34.615 0.00 0.00 0.00 3.16
2974 3065 6.305877 TCGATTACAACAACAACAACAACAAC 59.694 34.615 0.00 0.00 0.00 3.32
2975 3066 6.379386 TCGATTACAACAACAACAACAACAA 58.621 32.000 0.00 0.00 0.00 2.83
2976 3067 5.939457 TCGATTACAACAACAACAACAACA 58.061 33.333 0.00 0.00 0.00 3.33
3041 3132 0.534877 ATCTGGTGCGCAGTTTGTGA 60.535 50.000 12.22 3.99 0.00 3.58
3046 3137 1.665679 CGATAAATCTGGTGCGCAGTT 59.334 47.619 12.22 0.00 0.00 3.16
3062 3157 8.171164 ACATGAGTCATTCTTGTATCTCGATA 57.829 34.615 1.86 0.00 41.05 2.92
3072 3167 7.043524 CGAGACATAGAACATGAGTCATTCTTG 60.044 40.741 12.95 12.57 37.09 3.02
3190 3289 5.607477 CACGTATAATCCATGTACCCAAGT 58.393 41.667 0.00 0.00 0.00 3.16
3191 3290 4.451096 GCACGTATAATCCATGTACCCAAG 59.549 45.833 0.00 0.00 0.00 3.61
3193 3292 3.644265 AGCACGTATAATCCATGTACCCA 59.356 43.478 0.00 0.00 0.00 4.51
3194 3293 3.994392 CAGCACGTATAATCCATGTACCC 59.006 47.826 0.00 0.00 0.00 3.69
3199 3298 7.063426 CCATACTAACAGCACGTATAATCCATG 59.937 40.741 0.00 0.00 0.00 3.66
3242 3375 6.013639 ACAACCAAATCCAAGCTACTAGTACT 60.014 38.462 0.00 0.00 0.00 2.73
3243 3376 6.171213 ACAACCAAATCCAAGCTACTAGTAC 58.829 40.000 0.00 0.00 0.00 2.73
3244 3377 6.368779 ACAACCAAATCCAAGCTACTAGTA 57.631 37.500 1.89 1.89 0.00 1.82
3245 3378 5.242795 ACAACCAAATCCAAGCTACTAGT 57.757 39.130 0.00 0.00 0.00 2.57
3246 3379 5.106157 CCAACAACCAAATCCAAGCTACTAG 60.106 44.000 0.00 0.00 0.00 2.57
3247 3380 4.764823 CCAACAACCAAATCCAAGCTACTA 59.235 41.667 0.00 0.00 0.00 1.82
3285 3418 3.121126 CGTCAACAACGCACTAACCTTAG 60.121 47.826 0.00 0.00 45.76 2.18
3299 3432 0.179121 AGACAGTGACGCGTCAACAA 60.179 50.000 40.60 18.38 41.85 2.83
3339 3472 1.399714 CAGGATGACAAGGCATGCAT 58.600 50.000 21.36 10.32 39.69 3.96
3347 3480 1.337071 GCATGATGCCAGGATGACAAG 59.663 52.381 6.04 0.00 37.42 3.16
3381 3514 8.726988 TCAAAGTTCAGAATAAAACCTTATCCG 58.273 33.333 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.