Multiple sequence alignment - TraesCS1B01G231000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G231000 chr1B 100.000 3419 0 0 1 3419 414805237 414808655 0.000000e+00 6314.0
1 TraesCS1B01G231000 chr1B 98.901 728 8 0 1 728 57742718 57741991 0.000000e+00 1301.0
2 TraesCS1B01G231000 chr1B 97.965 737 13 2 1 737 90181032 90180298 0.000000e+00 1277.0
3 TraesCS1B01G231000 chr1B 79.526 591 113 7 2092 2678 8914781 8914195 6.830000e-112 414.0
4 TraesCS1B01G231000 chr1B 90.268 298 27 2 3122 3419 415095716 415096011 4.140000e-104 388.0
5 TraesCS1B01G231000 chr1B 89.933 298 30 0 3122 3419 139369190 139368893 5.350000e-103 385.0
6 TraesCS1B01G231000 chr1B 78.547 592 117 9 2092 2678 9264223 9264809 6.920000e-102 381.0
7 TraesCS1B01G231000 chr1A 91.190 2327 172 16 800 3113 385660471 385662777 0.000000e+00 3131.0
8 TraesCS1B01G231000 chr1A 95.349 86 3 1 729 813 385660372 385660457 5.950000e-28 135.0
9 TraesCS1B01G231000 chr1A 81.560 141 18 8 2276 2411 8289990 8290127 3.610000e-20 110.0
10 TraesCS1B01G231000 chr1D 90.291 1308 90 19 732 2032 307217118 307218395 0.000000e+00 1677.0
11 TraesCS1B01G231000 chr1D 91.400 907 75 3 2029 2933 307218552 307219457 0.000000e+00 1240.0
12 TraesCS1B01G231000 chr2B 98.639 735 10 0 1 735 742107863 742108597 0.000000e+00 1303.0
13 TraesCS1B01G231000 chr2B 98.214 728 11 2 1 728 742168922 742169647 0.000000e+00 1271.0
14 TraesCS1B01G231000 chr2B 89.384 292 29 2 3122 3413 449221501 449221790 1.940000e-97 366.0
15 TraesCS1B01G231000 chr7B 98.626 728 8 1 1 728 23391644 23392369 0.000000e+00 1288.0
16 TraesCS1B01G231000 chr7B 88.119 303 34 2 3118 3419 619786003 619785702 3.240000e-95 359.0
17 TraesCS1B01G231000 chr6A 98.352 728 10 1 1 728 538053590 538054315 0.000000e+00 1277.0
18 TraesCS1B01G231000 chr6B 98.214 728 11 2 1 728 633350658 633351383 0.000000e+00 1271.0
19 TraesCS1B01G231000 chr5B 98.214 728 11 1 1 728 641105505 641106230 0.000000e+00 1271.0
20 TraesCS1B01G231000 chr3B 98.080 729 12 1 1 729 672003198 672003924 0.000000e+00 1267.0
21 TraesCS1B01G231000 chr3B 92.282 298 22 1 3122 3419 603568523 603568227 4.080000e-114 422.0
22 TraesCS1B01G231000 chr3D 90.444 293 27 1 3127 3419 582303836 582303545 5.350000e-103 385.0
23 TraesCS1B01G231000 chr2D 89.865 296 29 1 3124 3419 405962279 405962573 2.490000e-101 379.0
24 TraesCS1B01G231000 chr2D 88.926 298 32 1 3122 3419 489636135 489635839 1.940000e-97 366.0
25 TraesCS1B01G231000 chr4B 89.492 295 30 1 3122 3416 427018530 427018237 4.170000e-99 372.0
26 TraesCS1B01G231000 chr7A 72.673 505 127 10 2093 2590 128510644 128510144 1.270000e-34 158.0
27 TraesCS1B01G231000 chr7D 92.857 42 3 0 1028 1069 127753591 127753550 1.020000e-05 62.1
28 TraesCS1B01G231000 chr7D 94.737 38 2 0 1028 1065 127766105 127766068 3.680000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G231000 chr1B 414805237 414808655 3418 False 6314.0 6314 100.0000 1 3419 1 chr1B.!!$F2 3418
1 TraesCS1B01G231000 chr1B 57741991 57742718 727 True 1301.0 1301 98.9010 1 728 1 chr1B.!!$R2 727
2 TraesCS1B01G231000 chr1B 90180298 90181032 734 True 1277.0 1277 97.9650 1 737 1 chr1B.!!$R3 736
3 TraesCS1B01G231000 chr1B 8914195 8914781 586 True 414.0 414 79.5260 2092 2678 1 chr1B.!!$R1 586
4 TraesCS1B01G231000 chr1B 9264223 9264809 586 False 381.0 381 78.5470 2092 2678 1 chr1B.!!$F1 586
5 TraesCS1B01G231000 chr1A 385660372 385662777 2405 False 1633.0 3131 93.2695 729 3113 2 chr1A.!!$F2 2384
6 TraesCS1B01G231000 chr1D 307217118 307219457 2339 False 1458.5 1677 90.8455 732 2933 2 chr1D.!!$F1 2201
7 TraesCS1B01G231000 chr2B 742107863 742108597 734 False 1303.0 1303 98.6390 1 735 1 chr2B.!!$F2 734
8 TraesCS1B01G231000 chr2B 742168922 742169647 725 False 1271.0 1271 98.2140 1 728 1 chr2B.!!$F3 727
9 TraesCS1B01G231000 chr7B 23391644 23392369 725 False 1288.0 1288 98.6260 1 728 1 chr7B.!!$F1 727
10 TraesCS1B01G231000 chr6A 538053590 538054315 725 False 1277.0 1277 98.3520 1 728 1 chr6A.!!$F1 727
11 TraesCS1B01G231000 chr6B 633350658 633351383 725 False 1271.0 1271 98.2140 1 728 1 chr6B.!!$F1 727
12 TraesCS1B01G231000 chr5B 641105505 641106230 725 False 1271.0 1271 98.2140 1 728 1 chr5B.!!$F1 727
13 TraesCS1B01G231000 chr3B 672003198 672003924 726 False 1267.0 1267 98.0800 1 729 1 chr3B.!!$F1 728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 952 0.178932 AGTACCTCCACAGCACTCCA 60.179 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 2750 0.032615 TGGGTTTGCCAGGAACAACT 60.033 50.0 0.0 0.0 36.17 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 1.875576 CGCTTCTACATGCATCCTCCC 60.876 57.143 0.00 0.00 0.00 4.30
363 364 3.760151 CTCTGATGCACTTTGGGAATTGA 59.240 43.478 0.00 0.00 0.00 2.57
813 816 6.663944 AGCTTTCACCTAGCTTAATTAACG 57.336 37.500 0.00 0.00 46.42 3.18
860 890 7.328493 CACCATCGCATCGTATTCTTATCTTAA 59.672 37.037 0.00 0.00 0.00 1.85
861 891 8.035394 ACCATCGCATCGTATTCTTATCTTAAT 58.965 33.333 0.00 0.00 0.00 1.40
921 952 0.178932 AGTACCTCCACAGCACTCCA 60.179 55.000 0.00 0.00 0.00 3.86
958 989 2.494471 CAACCTGCCAATCACACATCAT 59.506 45.455 0.00 0.00 0.00 2.45
968 999 0.729116 CACACATCATTCACTCGGCC 59.271 55.000 0.00 0.00 0.00 6.13
969 1000 0.324614 ACACATCATTCACTCGGCCA 59.675 50.000 2.24 0.00 0.00 5.36
970 1001 0.729116 CACATCATTCACTCGGCCAC 59.271 55.000 2.24 0.00 0.00 5.01
971 1002 0.324614 ACATCATTCACTCGGCCACA 59.675 50.000 2.24 0.00 0.00 4.17
972 1003 1.012086 CATCATTCACTCGGCCACAG 58.988 55.000 2.24 0.00 0.00 3.66
973 1004 0.745845 ATCATTCACTCGGCCACAGC 60.746 55.000 2.24 0.00 38.76 4.40
987 1018 0.540365 CACAGCCCACAGGAACCAAT 60.540 55.000 0.00 0.00 33.47 3.16
995 1026 3.117550 CCCACAGGAACCAATATCCATCA 60.118 47.826 0.00 0.00 39.55 3.07
1116 1147 2.916702 TCATGCCATCGTAGCTCAAT 57.083 45.000 0.00 0.00 0.00 2.57
1131 1163 7.855904 TCGTAGCTCAATTTCTTTTTCTTGTTC 59.144 33.333 0.00 0.00 0.00 3.18
1135 1167 8.253113 AGCTCAATTTCTTTTTCTTGTTCTTCA 58.747 29.630 0.00 0.00 0.00 3.02
1249 1283 5.327616 TCGACGAGGATTACCAAATTGTA 57.672 39.130 0.00 0.00 38.94 2.41
1267 1301 8.714179 CAAATTGTATGTGTCTGCAAATTTCAT 58.286 29.630 0.00 0.00 0.00 2.57
1390 1428 2.676471 GTTTGGATGCACCCGGCT 60.676 61.111 0.00 0.00 45.15 5.52
1422 1460 3.343617 CAACCTTGTTCATCCATACCGT 58.656 45.455 0.00 0.00 0.00 4.83
1426 1464 3.126858 CCTTGTTCATCCATACCGTGTTG 59.873 47.826 0.00 0.00 0.00 3.33
1445 1483 4.519612 TGCAGGGTTGTGCTGGCA 62.520 61.111 0.00 0.00 44.32 4.92
1511 1549 1.076533 CAAGGGTGTACTACGCGCAG 61.077 60.000 5.73 4.99 46.08 5.18
1611 1649 1.742768 GTATGGACGGAGGAGCAGG 59.257 63.158 0.00 0.00 0.00 4.85
1703 1741 0.179145 CCGGACGCGTCTCAAACTAT 60.179 55.000 35.50 0.00 0.00 2.12
1716 1754 8.557864 GCGTCTCAAACTATAGTAATGACTCTA 58.442 37.037 5.65 0.00 37.10 2.43
1808 1848 8.928733 GTTCGAAAATATGTAGAGTTACAACCA 58.071 33.333 0.00 0.00 42.72 3.67
1847 1887 1.598130 GAGCACCGACAAGCAGGTT 60.598 57.895 0.00 0.00 39.00 3.50
1865 1905 0.747255 TTAGTCCTCAGATGAGCGCC 59.253 55.000 2.29 0.00 40.75 6.53
1868 1908 1.829970 TCCTCAGATGAGCGCCGAT 60.830 57.895 2.29 0.00 40.75 4.18
1928 1968 3.543680 AAGGACGAGATACCCAATGTG 57.456 47.619 0.00 0.00 0.00 3.21
1949 1989 3.244215 TGGTCGATGACTTCAGAAAAGCT 60.244 43.478 0.00 0.00 32.47 3.74
1976 2016 2.897350 GCCATCGCAGCTGGTACC 60.897 66.667 17.12 4.43 36.10 3.34
1978 2018 2.028125 GCCATCGCAGCTGGTACCTA 62.028 60.000 17.12 0.00 36.10 3.08
1984 2024 3.028850 TCGCAGCTGGTACCTATTACTT 58.971 45.455 17.12 0.00 0.00 2.24
1988 2028 4.100498 GCAGCTGGTACCTATTACTTACCA 59.900 45.833 17.12 0.00 42.43 3.25
2009 2049 6.362248 ACCAATACTACTTCACTTTGTTGGT 58.638 36.000 0.00 0.00 41.23 3.67
2010 2050 6.831868 ACCAATACTACTTCACTTTGTTGGTT 59.168 34.615 0.00 0.00 42.85 3.67
2065 2268 4.150897 TCATACTATGTCCAAGCAACCC 57.849 45.455 0.00 0.00 0.00 4.11
2067 2270 4.966168 TCATACTATGTCCAAGCAACCCTA 59.034 41.667 0.00 0.00 0.00 3.53
2070 2273 0.034089 ATGTCCAAGCAACCCTAGGC 60.034 55.000 2.05 0.00 0.00 3.93
2124 2328 1.399744 TTGAGATCCACGGCGCCTAT 61.400 55.000 26.68 12.49 0.00 2.57
2196 2400 3.755628 TACGGTGGCAGCCTCGAC 61.756 66.667 26.78 12.39 0.00 4.20
2427 2631 3.900892 CGACGCTAGGTCCCGCAT 61.901 66.667 5.97 0.00 42.99 4.73
2428 2632 2.499685 GACGCTAGGTCCCGCATT 59.500 61.111 0.00 0.00 39.90 3.56
2430 2634 2.186903 CGCTAGGTCCCGCATTGT 59.813 61.111 0.00 0.00 0.00 2.71
2434 2638 0.537188 CTAGGTCCCGCATTGTCTGT 59.463 55.000 0.00 0.00 0.00 3.41
2535 2739 0.104620 AGGGGTACACTGACCTGGTT 60.105 55.000 0.00 0.00 39.66 3.67
2546 2750 0.323360 GACCTGGTTGCTTATGGGCA 60.323 55.000 0.00 0.00 40.74 5.36
2548 2752 0.323725 CCTGGTTGCTTATGGGCAGT 60.324 55.000 0.00 0.00 43.39 4.40
2575 2779 0.608308 GGCAAACCCAGACCTACCAC 60.608 60.000 0.00 0.00 0.00 4.16
2645 2849 2.158652 TCTATACCTCTGACCCTGTCGG 60.159 54.545 0.00 0.00 40.02 4.79
2689 2893 6.465439 TCCTCGACTAATAAATCAGCTTCA 57.535 37.500 0.00 0.00 0.00 3.02
2697 2901 8.284945 ACTAATAAATCAGCTTCATGCAAAGA 57.715 30.769 2.23 0.00 45.94 2.52
2701 2905 2.011947 TCAGCTTCATGCAAAGATCGG 58.988 47.619 2.23 0.00 45.94 4.18
2810 3016 6.862711 AAATGACACATCTATGATGCTCAG 57.137 37.500 7.39 0.00 0.00 3.35
2813 3019 5.114081 TGACACATCTATGATGCTCAGTTG 58.886 41.667 7.39 0.99 0.00 3.16
2821 3027 2.089201 TGATGCTCAGTTGCCATCTTG 58.911 47.619 11.27 0.00 0.00 3.02
2922 3128 4.880120 AGAAGTGACACATAATGCATGAGG 59.120 41.667 8.59 0.00 38.10 3.86
2941 3147 6.109320 TGAGGTAAAACTTGTTTACACACG 57.891 37.500 10.26 0.00 36.79 4.49
2945 3151 4.359971 AAAACTTGTTTACACACGGGAC 57.640 40.909 0.00 0.00 30.32 4.46
2959 3165 1.592223 GGGACAGACAAGGTCTCCG 59.408 63.158 0.00 0.00 41.37 4.63
2986 3197 2.547218 GCTAACGTCCTTGTGGAGTTGA 60.547 50.000 0.00 0.00 44.16 3.18
2995 3206 5.180304 GTCCTTGTGGAGTTGAAGAGATTTC 59.820 44.000 0.00 0.00 44.16 2.17
3002 3213 7.041098 TGTGGAGTTGAAGAGATTTCTAAAAGC 60.041 37.037 0.00 0.00 31.96 3.51
3014 3225 7.597386 AGATTTCTAAAAGCAAGACCAATCAC 58.403 34.615 0.00 0.00 28.84 3.06
3016 3227 8.635765 ATTTCTAAAAGCAAGACCAATCACTA 57.364 30.769 0.00 0.00 0.00 2.74
3033 3244 7.605691 CCAATCACTATTTTCTCAAGAGTGACT 59.394 37.037 12.86 1.46 46.73 3.41
3037 3248 8.638873 TCACTATTTTCTCAAGAGTGACTACAA 58.361 33.333 7.75 0.00 41.11 2.41
3047 3258 8.534333 TCAAGAGTGACTACAATCATTTGTAC 57.466 34.615 0.00 0.00 44.22 2.90
3052 3263 8.087982 AGTGACTACAATCATTTGTACTGTTG 57.912 34.615 0.00 0.00 44.22 3.33
3064 3275 2.219903 TGTACTGTTGCATGACGAAACG 59.780 45.455 0.00 0.00 0.00 3.60
3066 3277 2.143122 ACTGTTGCATGACGAAACGAT 58.857 42.857 0.00 0.00 0.00 3.73
3068 3279 3.743911 ACTGTTGCATGACGAAACGATTA 59.256 39.130 0.00 0.00 0.00 1.75
3069 3280 4.060288 TGTTGCATGACGAAACGATTAC 57.940 40.909 0.00 0.00 0.00 1.89
3071 3282 2.967362 TGCATGACGAAACGATTACCT 58.033 42.857 0.00 0.00 0.00 3.08
3072 3283 4.112716 TGCATGACGAAACGATTACCTA 57.887 40.909 0.00 0.00 0.00 3.08
3087 3299 8.677148 ACGATTACCTAAATGCTAAATGTGAT 57.323 30.769 0.00 0.00 0.00 3.06
3099 3311 6.940867 ATGCTAAATGTGATGTGAGCATCTAT 59.059 34.615 8.73 2.00 45.09 1.98
3113 3325 5.422012 TGAGCATCTATCTGGAACTGTGTTA 59.578 40.000 0.00 0.00 34.92 2.41
3114 3326 5.665459 AGCATCTATCTGGAACTGTGTTAC 58.335 41.667 0.00 0.00 0.00 2.50
3115 3327 4.504461 GCATCTATCTGGAACTGTGTTACG 59.496 45.833 0.00 0.00 0.00 3.18
3116 3328 4.106029 TCTATCTGGAACTGTGTTACGC 57.894 45.455 0.00 0.00 0.00 4.42
3117 3329 2.094762 ATCTGGAACTGTGTTACGCC 57.905 50.000 0.00 0.00 0.00 5.68
3118 3330 1.045407 TCTGGAACTGTGTTACGCCT 58.955 50.000 0.00 0.00 0.00 5.52
3119 3331 1.148310 CTGGAACTGTGTTACGCCTG 58.852 55.000 0.00 0.00 0.00 4.85
3120 3332 0.466543 TGGAACTGTGTTACGCCTGT 59.533 50.000 0.00 0.00 0.00 4.00
3121 3333 1.134340 TGGAACTGTGTTACGCCTGTT 60.134 47.619 4.61 4.61 0.00 3.16
3122 3334 1.263217 GGAACTGTGTTACGCCTGTTG 59.737 52.381 8.57 0.00 0.00 3.33
3123 3335 1.937899 GAACTGTGTTACGCCTGTTGT 59.062 47.619 8.57 0.00 0.00 3.32
3124 3336 1.578583 ACTGTGTTACGCCTGTTGTC 58.421 50.000 0.00 0.00 0.00 3.18
3125 3337 1.134640 ACTGTGTTACGCCTGTTGTCA 60.135 47.619 0.00 0.00 0.00 3.58
3126 3338 2.143122 CTGTGTTACGCCTGTTGTCAT 58.857 47.619 0.00 0.00 0.00 3.06
3127 3339 1.870402 TGTGTTACGCCTGTTGTCATG 59.130 47.619 0.00 0.00 0.00 3.07
3128 3340 1.196808 GTGTTACGCCTGTTGTCATGG 59.803 52.381 0.00 0.00 0.00 3.66
3129 3341 0.802494 GTTACGCCTGTTGTCATGGG 59.198 55.000 0.00 0.00 0.00 4.00
3130 3342 0.687920 TTACGCCTGTTGTCATGGGA 59.312 50.000 0.00 0.00 0.00 4.37
3131 3343 0.687920 TACGCCTGTTGTCATGGGAA 59.312 50.000 0.00 0.00 0.00 3.97
3132 3344 0.889186 ACGCCTGTTGTCATGGGAAC 60.889 55.000 0.00 0.00 0.00 3.62
3143 3355 4.074259 TGTCATGGGAACAAATCTGACAG 58.926 43.478 0.00 0.00 46.27 3.51
3144 3356 4.446167 TGTCATGGGAACAAATCTGACAGT 60.446 41.667 1.59 0.00 46.27 3.55
3145 3357 5.221823 TGTCATGGGAACAAATCTGACAGTA 60.222 40.000 1.59 0.00 46.27 2.74
3146 3358 7.020040 TGTCATGGGAACAAATCTGACAGTAG 61.020 42.308 1.59 0.00 46.27 2.57
3147 3359 9.103471 TGTCATGGGAACAAATCTGACAGTAGA 62.103 40.741 1.59 0.00 46.27 2.59
3148 3360 5.152623 TGGGAACAAATCTGACAGTAGAG 57.847 43.478 1.59 0.00 37.44 2.43
3149 3361 4.838423 TGGGAACAAATCTGACAGTAGAGA 59.162 41.667 1.59 0.00 37.44 3.10
3150 3362 5.485353 TGGGAACAAATCTGACAGTAGAGAT 59.515 40.000 1.59 0.00 37.44 2.75
3151 3363 6.667848 TGGGAACAAATCTGACAGTAGAGATA 59.332 38.462 1.59 0.00 37.44 1.98
3152 3364 7.147828 TGGGAACAAATCTGACAGTAGAGATAG 60.148 40.741 1.59 0.00 37.44 2.08
3153 3365 7.206687 GGAACAAATCTGACAGTAGAGATAGG 58.793 42.308 1.59 0.00 0.00 2.57
3154 3366 6.723298 ACAAATCTGACAGTAGAGATAGGG 57.277 41.667 1.59 0.00 0.00 3.53
3155 3367 5.600484 ACAAATCTGACAGTAGAGATAGGGG 59.400 44.000 1.59 0.00 0.00 4.79
3156 3368 3.885976 TCTGACAGTAGAGATAGGGGG 57.114 52.381 1.59 0.00 0.00 5.40
3157 3369 3.132056 TCTGACAGTAGAGATAGGGGGT 58.868 50.000 1.59 0.00 0.00 4.95
3158 3370 4.313362 TCTGACAGTAGAGATAGGGGGTA 58.687 47.826 1.59 0.00 0.00 3.69
3159 3371 4.104420 TCTGACAGTAGAGATAGGGGGTAC 59.896 50.000 1.59 0.00 0.00 3.34
3160 3372 3.181447 TGACAGTAGAGATAGGGGGTACG 60.181 52.174 0.00 0.00 0.00 3.67
3161 3373 2.782341 ACAGTAGAGATAGGGGGTACGT 59.218 50.000 0.00 0.00 0.00 3.57
3162 3374 3.976654 ACAGTAGAGATAGGGGGTACGTA 59.023 47.826 0.00 0.00 0.00 3.57
3163 3375 4.041444 ACAGTAGAGATAGGGGGTACGTAG 59.959 50.000 0.00 0.00 0.00 3.51
3164 3376 3.586618 AGTAGAGATAGGGGGTACGTAGG 59.413 52.174 0.00 0.00 0.00 3.18
3165 3377 2.711174 AGAGATAGGGGGTACGTAGGA 58.289 52.381 0.00 0.00 0.00 2.94
3166 3378 2.643801 AGAGATAGGGGGTACGTAGGAG 59.356 54.545 0.00 0.00 0.00 3.69
3167 3379 2.641815 GAGATAGGGGGTACGTAGGAGA 59.358 54.545 0.00 0.00 0.00 3.71
3168 3380 2.643801 AGATAGGGGGTACGTAGGAGAG 59.356 54.545 0.00 0.00 0.00 3.20
3169 3381 1.143813 TAGGGGGTACGTAGGAGAGG 58.856 60.000 0.00 0.00 0.00 3.69
3170 3382 1.152589 GGGGGTACGTAGGAGAGGG 60.153 68.421 0.00 0.00 0.00 4.30
3171 3383 1.831726 GGGGTACGTAGGAGAGGGC 60.832 68.421 0.00 0.00 0.00 5.19
3172 3384 1.076485 GGGTACGTAGGAGAGGGCA 60.076 63.158 0.00 0.00 0.00 5.36
3173 3385 1.108132 GGGTACGTAGGAGAGGGCAG 61.108 65.000 0.00 0.00 0.00 4.85
3174 3386 0.106819 GGTACGTAGGAGAGGGCAGA 60.107 60.000 0.00 0.00 0.00 4.26
3175 3387 1.310904 GTACGTAGGAGAGGGCAGAG 58.689 60.000 0.00 0.00 0.00 3.35
3176 3388 0.917533 TACGTAGGAGAGGGCAGAGT 59.082 55.000 0.00 0.00 0.00 3.24
3177 3389 0.394625 ACGTAGGAGAGGGCAGAGTC 60.395 60.000 0.00 0.00 0.00 3.36
3178 3390 0.106918 CGTAGGAGAGGGCAGAGTCT 60.107 60.000 0.00 0.00 0.00 3.24
3179 3391 1.141254 CGTAGGAGAGGGCAGAGTCTA 59.859 57.143 0.00 0.00 0.00 2.59
3180 3392 2.808933 CGTAGGAGAGGGCAGAGTCTAG 60.809 59.091 0.00 0.00 0.00 2.43
3181 3393 0.106217 AGGAGAGGGCAGAGTCTAGC 60.106 60.000 0.00 0.00 0.00 3.42
3182 3394 0.106217 GGAGAGGGCAGAGTCTAGCT 60.106 60.000 12.36 0.00 0.00 3.32
3183 3395 1.144093 GGAGAGGGCAGAGTCTAGCTA 59.856 57.143 12.36 0.00 0.00 3.32
3184 3396 2.227194 GAGAGGGCAGAGTCTAGCTAC 58.773 57.143 12.36 7.62 0.00 3.58
3185 3397 0.948678 GAGGGCAGAGTCTAGCTACG 59.051 60.000 12.36 0.00 0.00 3.51
3186 3398 0.466555 AGGGCAGAGTCTAGCTACGG 60.467 60.000 12.36 0.00 0.00 4.02
3187 3399 1.360911 GGCAGAGTCTAGCTACGGC 59.639 63.158 12.36 0.00 39.06 5.68
3188 3400 1.009449 GCAGAGTCTAGCTACGGCG 60.009 63.158 4.80 4.80 44.37 6.46
3189 3401 1.437772 GCAGAGTCTAGCTACGGCGA 61.438 60.000 16.62 0.00 44.37 5.54
3190 3402 0.584396 CAGAGTCTAGCTACGGCGAG 59.416 60.000 16.62 8.03 44.37 5.03
3191 3403 0.533308 AGAGTCTAGCTACGGCGAGG 60.533 60.000 16.62 6.71 44.37 4.63
3192 3404 0.814812 GAGTCTAGCTACGGCGAGGT 60.815 60.000 16.62 14.71 44.37 3.85
3193 3405 0.394080 AGTCTAGCTACGGCGAGGTT 60.394 55.000 16.62 6.16 44.37 3.50
3194 3406 0.248539 GTCTAGCTACGGCGAGGTTG 60.249 60.000 16.62 13.04 44.37 3.77
3195 3407 0.679002 TCTAGCTACGGCGAGGTTGT 60.679 55.000 16.62 0.00 44.37 3.32
3196 3408 1.019673 CTAGCTACGGCGAGGTTGTA 58.980 55.000 16.62 0.00 44.37 2.41
3197 3409 0.734889 TAGCTACGGCGAGGTTGTAC 59.265 55.000 16.62 0.00 44.37 2.90
3198 3410 1.213537 GCTACGGCGAGGTTGTACA 59.786 57.895 16.62 0.00 0.00 2.90
3199 3411 1.074872 GCTACGGCGAGGTTGTACAC 61.075 60.000 16.62 0.00 0.00 2.90
3200 3412 0.524862 CTACGGCGAGGTTGTACACT 59.475 55.000 16.62 0.00 0.00 3.55
3201 3413 0.961019 TACGGCGAGGTTGTACACTT 59.039 50.000 16.62 0.00 0.00 3.16
3202 3414 0.599204 ACGGCGAGGTTGTACACTTG 60.599 55.000 16.62 0.00 0.00 3.16
3203 3415 1.289109 CGGCGAGGTTGTACACTTGG 61.289 60.000 0.00 0.00 0.00 3.61
3204 3416 0.250166 GGCGAGGTTGTACACTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
3205 3417 1.589803 GCGAGGTTGTACACTTGGTT 58.410 50.000 0.00 0.00 0.00 3.67
3206 3418 1.944709 GCGAGGTTGTACACTTGGTTT 59.055 47.619 0.00 0.00 0.00 3.27
3207 3419 2.356695 GCGAGGTTGTACACTTGGTTTT 59.643 45.455 0.00 0.00 0.00 2.43
3208 3420 3.560896 GCGAGGTTGTACACTTGGTTTTA 59.439 43.478 0.00 0.00 0.00 1.52
3209 3421 4.553351 GCGAGGTTGTACACTTGGTTTTAC 60.553 45.833 0.00 0.00 0.00 2.01
3210 3422 4.318263 CGAGGTTGTACACTTGGTTTTACG 60.318 45.833 0.00 0.00 0.00 3.18
3211 3423 4.768583 AGGTTGTACACTTGGTTTTACGA 58.231 39.130 0.00 0.00 0.00 3.43
3212 3424 4.571984 AGGTTGTACACTTGGTTTTACGAC 59.428 41.667 0.00 0.00 0.00 4.34
3213 3425 4.571984 GGTTGTACACTTGGTTTTACGACT 59.428 41.667 0.00 0.00 31.83 4.18
3214 3426 5.065090 GGTTGTACACTTGGTTTTACGACTT 59.935 40.000 0.00 0.00 31.83 3.01
3215 3427 5.971895 TGTACACTTGGTTTTACGACTTC 57.028 39.130 0.00 0.00 0.00 3.01
3216 3428 5.417811 TGTACACTTGGTTTTACGACTTCA 58.582 37.500 0.00 0.00 0.00 3.02
3217 3429 5.521010 TGTACACTTGGTTTTACGACTTCAG 59.479 40.000 0.00 0.00 0.00 3.02
3218 3430 3.875134 ACACTTGGTTTTACGACTTCAGG 59.125 43.478 0.00 0.00 0.00 3.86
3219 3431 2.876550 ACTTGGTTTTACGACTTCAGGC 59.123 45.455 0.00 0.00 0.00 4.85
3220 3432 1.886886 TGGTTTTACGACTTCAGGCC 58.113 50.000 0.00 0.00 0.00 5.19
3221 3433 1.162698 GGTTTTACGACTTCAGGCCC 58.837 55.000 0.00 0.00 0.00 5.80
3222 3434 1.162698 GTTTTACGACTTCAGGCCCC 58.837 55.000 0.00 0.00 0.00 5.80
3223 3435 1.061546 TTTTACGACTTCAGGCCCCT 58.938 50.000 0.00 0.00 0.00 4.79
3224 3436 1.061546 TTTACGACTTCAGGCCCCTT 58.938 50.000 0.00 0.00 0.00 3.95
3225 3437 1.061546 TTACGACTTCAGGCCCCTTT 58.938 50.000 0.00 0.00 0.00 3.11
3226 3438 0.611714 TACGACTTCAGGCCCCTTTC 59.388 55.000 0.00 0.00 0.00 2.62
3227 3439 1.741770 CGACTTCAGGCCCCTTTCG 60.742 63.158 0.00 0.00 0.00 3.46
3228 3440 1.377333 GACTTCAGGCCCCTTTCGG 60.377 63.158 0.00 0.00 0.00 4.30
3229 3441 1.838073 GACTTCAGGCCCCTTTCGGA 61.838 60.000 0.00 0.00 0.00 4.55
3230 3442 1.078143 CTTCAGGCCCCTTTCGGAG 60.078 63.158 0.00 0.00 0.00 4.63
3231 3443 2.543067 CTTCAGGCCCCTTTCGGAGG 62.543 65.000 0.00 0.00 45.86 4.30
3241 3453 2.011540 CTTTCGGAGGAGGTAACAGC 57.988 55.000 0.00 0.00 41.41 4.40
3242 3454 1.550976 CTTTCGGAGGAGGTAACAGCT 59.449 52.381 0.00 0.00 41.41 4.24
3243 3455 1.183549 TTCGGAGGAGGTAACAGCTC 58.816 55.000 0.00 0.00 41.73 4.09
3244 3456 0.331954 TCGGAGGAGGTAACAGCTCT 59.668 55.000 5.46 0.00 42.10 4.09
3245 3457 1.562942 TCGGAGGAGGTAACAGCTCTA 59.437 52.381 5.46 0.00 42.10 2.43
3246 3458 1.677052 CGGAGGAGGTAACAGCTCTAC 59.323 57.143 5.46 0.00 42.10 2.59
3247 3459 1.677052 GGAGGAGGTAACAGCTCTACG 59.323 57.143 5.46 0.00 42.10 3.51
3248 3460 2.367486 GAGGAGGTAACAGCTCTACGT 58.633 52.381 5.46 0.00 42.10 3.57
3249 3461 2.093106 AGGAGGTAACAGCTCTACGTG 58.907 52.381 0.00 0.00 42.10 4.49
3250 3462 1.817447 GGAGGTAACAGCTCTACGTGT 59.183 52.381 0.00 0.00 42.10 4.49
3251 3463 2.159407 GGAGGTAACAGCTCTACGTGTC 60.159 54.545 0.00 0.00 42.10 3.67
3252 3464 1.467734 AGGTAACAGCTCTACGTGTCG 59.532 52.381 0.00 0.00 41.41 4.35
3253 3465 1.467035 GGTAACAGCTCTACGTGTCGG 60.467 57.143 0.00 0.00 0.00 4.79
3254 3466 1.198637 GTAACAGCTCTACGTGTCGGT 59.801 52.381 0.00 0.00 0.00 4.69
3255 3467 0.039437 AACAGCTCTACGTGTCGGTG 60.039 55.000 0.00 4.37 0.00 4.94
3256 3468 1.801913 CAGCTCTACGTGTCGGTGC 60.802 63.158 0.00 0.00 0.00 5.01
3257 3469 2.506438 GCTCTACGTGTCGGTGCC 60.506 66.667 0.00 0.00 0.00 5.01
3258 3470 2.991076 GCTCTACGTGTCGGTGCCT 61.991 63.158 0.00 0.00 0.00 4.75
3259 3471 1.136984 CTCTACGTGTCGGTGCCTC 59.863 63.158 0.00 0.00 0.00 4.70
3260 3472 2.202440 CTACGTGTCGGTGCCTCG 60.202 66.667 0.00 0.00 0.00 4.63
3261 3473 3.678717 CTACGTGTCGGTGCCTCGG 62.679 68.421 0.00 0.00 0.00 4.63
3263 3475 4.778415 CGTGTCGGTGCCTCGGAG 62.778 72.222 0.00 0.00 0.00 4.63
3264 3476 4.436998 GTGTCGGTGCCTCGGAGG 62.437 72.222 19.95 19.95 38.80 4.30
3274 3486 3.558674 CCTCGGAGGCTTTGTTGAT 57.441 52.632 11.83 0.00 0.00 2.57
3275 3487 1.826385 CCTCGGAGGCTTTGTTGATT 58.174 50.000 11.83 0.00 0.00 2.57
3276 3488 1.470098 CCTCGGAGGCTTTGTTGATTG 59.530 52.381 11.83 0.00 0.00 2.67
3277 3489 1.470098 CTCGGAGGCTTTGTTGATTGG 59.530 52.381 0.00 0.00 0.00 3.16
3278 3490 1.073125 TCGGAGGCTTTGTTGATTGGA 59.927 47.619 0.00 0.00 0.00 3.53
3279 3491 1.470098 CGGAGGCTTTGTTGATTGGAG 59.530 52.381 0.00 0.00 0.00 3.86
3280 3492 2.519013 GGAGGCTTTGTTGATTGGAGT 58.481 47.619 0.00 0.00 0.00 3.85
3281 3493 2.229784 GGAGGCTTTGTTGATTGGAGTG 59.770 50.000 0.00 0.00 0.00 3.51
3282 3494 2.887152 GAGGCTTTGTTGATTGGAGTGT 59.113 45.455 0.00 0.00 0.00 3.55
3283 3495 3.299503 AGGCTTTGTTGATTGGAGTGTT 58.700 40.909 0.00 0.00 0.00 3.32
3284 3496 3.068590 AGGCTTTGTTGATTGGAGTGTTG 59.931 43.478 0.00 0.00 0.00 3.33
3285 3497 3.068024 GGCTTTGTTGATTGGAGTGTTGA 59.932 43.478 0.00 0.00 0.00 3.18
3286 3498 4.293415 GCTTTGTTGATTGGAGTGTTGAG 58.707 43.478 0.00 0.00 0.00 3.02
3287 3499 4.202050 GCTTTGTTGATTGGAGTGTTGAGT 60.202 41.667 0.00 0.00 0.00 3.41
3288 3500 5.679638 GCTTTGTTGATTGGAGTGTTGAGTT 60.680 40.000 0.00 0.00 0.00 3.01
3289 3501 6.459573 GCTTTGTTGATTGGAGTGTTGAGTTA 60.460 38.462 0.00 0.00 0.00 2.24
3290 3502 6.371809 TTGTTGATTGGAGTGTTGAGTTAC 57.628 37.500 0.00 0.00 0.00 2.50
3291 3503 5.432645 TGTTGATTGGAGTGTTGAGTTACA 58.567 37.500 0.00 0.00 0.00 2.41
3292 3504 6.061441 TGTTGATTGGAGTGTTGAGTTACAT 58.939 36.000 0.00 0.00 0.00 2.29
3293 3505 6.017192 TGTTGATTGGAGTGTTGAGTTACATG 60.017 38.462 0.00 0.00 0.00 3.21
3294 3506 5.003160 TGATTGGAGTGTTGAGTTACATGG 58.997 41.667 0.00 0.00 0.00 3.66
3295 3507 3.417069 TGGAGTGTTGAGTTACATGGG 57.583 47.619 0.00 0.00 0.00 4.00
3296 3508 2.039746 TGGAGTGTTGAGTTACATGGGG 59.960 50.000 0.00 0.00 0.00 4.96
3297 3509 2.039879 GGAGTGTTGAGTTACATGGGGT 59.960 50.000 0.00 0.00 0.00 4.95
3298 3510 3.074412 GAGTGTTGAGTTACATGGGGTG 58.926 50.000 0.00 0.00 0.00 4.61
3299 3511 1.539827 GTGTTGAGTTACATGGGGTGC 59.460 52.381 0.00 0.00 0.00 5.01
3300 3512 0.802494 GTTGAGTTACATGGGGTGCG 59.198 55.000 0.00 0.00 0.00 5.34
3301 3513 0.322098 TTGAGTTACATGGGGTGCGG 60.322 55.000 0.00 0.00 0.00 5.69
3302 3514 1.451387 GAGTTACATGGGGTGCGGG 60.451 63.158 0.00 0.00 0.00 6.13
3303 3515 2.439519 GTTACATGGGGTGCGGGG 60.440 66.667 0.00 0.00 0.00 5.73
3304 3516 4.434354 TTACATGGGGTGCGGGGC 62.434 66.667 0.00 0.00 0.00 5.80
3320 3532 3.087065 GCCTTGTGCCTAAGGGGA 58.913 61.111 15.47 0.00 45.91 4.81
3321 3533 1.077429 GCCTTGTGCCTAAGGGGAG 60.077 63.158 15.47 0.00 45.91 4.30
3322 3534 1.609783 CCTTGTGCCTAAGGGGAGG 59.390 63.158 7.94 0.00 42.84 4.30
3323 3535 1.609783 CTTGTGCCTAAGGGGAGGG 59.390 63.158 0.00 0.00 37.06 4.30
3324 3536 0.914417 CTTGTGCCTAAGGGGAGGGA 60.914 60.000 0.00 0.00 37.06 4.20
3325 3537 0.253630 TTGTGCCTAAGGGGAGGGAT 60.254 55.000 0.00 0.00 39.40 3.85
3326 3538 0.988145 TGTGCCTAAGGGGAGGGATG 60.988 60.000 0.00 0.00 39.40 3.51
3327 3539 1.385915 TGCCTAAGGGGAGGGATGG 60.386 63.158 0.00 0.00 37.06 3.51
3328 3540 2.835049 GCCTAAGGGGAGGGATGGC 61.835 68.421 0.00 0.00 37.06 4.40
3329 3541 1.073397 CCTAAGGGGAGGGATGGCT 60.073 63.158 0.00 0.00 37.23 4.75
3330 3542 0.699231 CCTAAGGGGAGGGATGGCTT 60.699 60.000 0.00 0.00 37.23 4.35
3331 3543 1.416013 CCTAAGGGGAGGGATGGCTTA 60.416 57.143 0.00 0.00 37.23 3.09
3332 3544 2.637165 CTAAGGGGAGGGATGGCTTAT 58.363 52.381 0.00 0.00 0.00 1.73
3333 3545 2.835696 AAGGGGAGGGATGGCTTATA 57.164 50.000 0.00 0.00 0.00 0.98
3334 3546 3.314059 AAGGGGAGGGATGGCTTATAT 57.686 47.619 0.00 0.00 0.00 0.86
3335 3547 4.452167 AAGGGGAGGGATGGCTTATATA 57.548 45.455 0.00 0.00 0.00 0.86
3336 3548 4.014273 AGGGGAGGGATGGCTTATATAG 57.986 50.000 0.00 0.00 0.00 1.31
3337 3549 3.607575 AGGGGAGGGATGGCTTATATAGA 59.392 47.826 0.00 0.00 0.00 1.98
3338 3550 3.970640 GGGGAGGGATGGCTTATATAGAG 59.029 52.174 0.00 0.00 0.00 2.43
3339 3551 4.575264 GGGGAGGGATGGCTTATATAGAGT 60.575 50.000 0.00 0.00 0.00 3.24
3340 3552 4.407296 GGGAGGGATGGCTTATATAGAGTG 59.593 50.000 0.00 0.00 0.00 3.51
3341 3553 4.141824 GGAGGGATGGCTTATATAGAGTGC 60.142 50.000 0.00 0.00 0.00 4.40
3342 3554 3.449018 AGGGATGGCTTATATAGAGTGCG 59.551 47.826 0.00 0.00 0.00 5.34
3343 3555 3.190874 GGATGGCTTATATAGAGTGCGC 58.809 50.000 0.00 0.00 0.00 6.09
3344 3556 2.743636 TGGCTTATATAGAGTGCGCC 57.256 50.000 4.18 0.00 36.64 6.53
3345 3557 1.067846 TGGCTTATATAGAGTGCGCCG 60.068 52.381 4.18 0.00 38.85 6.46
3346 3558 1.201647 GGCTTATATAGAGTGCGCCGA 59.798 52.381 4.18 0.00 0.00 5.54
3347 3559 2.251893 GCTTATATAGAGTGCGCCGAC 58.748 52.381 4.18 0.00 0.00 4.79
3348 3560 2.864968 CTTATATAGAGTGCGCCGACC 58.135 52.381 4.18 0.00 0.00 4.79
3349 3561 1.171308 TATATAGAGTGCGCCGACCC 58.829 55.000 4.18 0.00 0.00 4.46
3350 3562 1.533469 ATATAGAGTGCGCCGACCCC 61.533 60.000 4.18 0.00 0.00 4.95
3351 3563 2.635787 TATAGAGTGCGCCGACCCCT 62.636 60.000 4.18 0.22 0.00 4.79
3352 3564 5.963427 TATATAGAGTGCGCCGACCCCTT 62.963 52.174 4.18 0.00 0.00 3.95
3360 3572 3.322466 CCGACCCCTTGCAGTCCT 61.322 66.667 0.00 0.00 0.00 3.85
3361 3573 2.266055 CGACCCCTTGCAGTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
3362 3574 2.583441 CGACCCCTTGCAGTCCTCA 61.583 63.158 0.00 0.00 0.00 3.86
3363 3575 1.298014 GACCCCTTGCAGTCCTCAG 59.702 63.158 0.00 0.00 0.00 3.35
3364 3576 1.462238 ACCCCTTGCAGTCCTCAGT 60.462 57.895 0.00 0.00 0.00 3.41
3365 3577 1.062488 ACCCCTTGCAGTCCTCAGTT 61.062 55.000 0.00 0.00 0.00 3.16
3366 3578 0.984230 CCCCTTGCAGTCCTCAGTTA 59.016 55.000 0.00 0.00 0.00 2.24
3367 3579 1.339151 CCCCTTGCAGTCCTCAGTTAC 60.339 57.143 0.00 0.00 0.00 2.50
3368 3580 1.347707 CCCTTGCAGTCCTCAGTTACA 59.652 52.381 0.00 0.00 0.00 2.41
3369 3581 2.417719 CCTTGCAGTCCTCAGTTACAC 58.582 52.381 0.00 0.00 0.00 2.90
3370 3582 2.224281 CCTTGCAGTCCTCAGTTACACA 60.224 50.000 0.00 0.00 0.00 3.72
3371 3583 3.466836 CTTGCAGTCCTCAGTTACACAA 58.533 45.455 0.00 0.00 0.00 3.33
3372 3584 3.111853 TGCAGTCCTCAGTTACACAAG 57.888 47.619 0.00 0.00 0.00 3.16
3373 3585 2.224281 TGCAGTCCTCAGTTACACAAGG 60.224 50.000 0.00 0.00 0.00 3.61
3374 3586 2.872038 GCAGTCCTCAGTTACACAAGGG 60.872 54.545 0.00 0.00 0.00 3.95
3375 3587 2.368875 CAGTCCTCAGTTACACAAGGGT 59.631 50.000 0.00 0.00 0.00 4.34
3376 3588 3.046374 AGTCCTCAGTTACACAAGGGTT 58.954 45.455 0.00 0.00 0.00 4.11
3377 3589 3.071167 AGTCCTCAGTTACACAAGGGTTC 59.929 47.826 0.00 0.00 0.00 3.62
3378 3590 3.042682 TCCTCAGTTACACAAGGGTTCA 58.957 45.455 0.00 0.00 0.00 3.18
3379 3591 3.456644 TCCTCAGTTACACAAGGGTTCAA 59.543 43.478 0.00 0.00 0.00 2.69
3380 3592 4.104102 TCCTCAGTTACACAAGGGTTCAAT 59.896 41.667 0.00 0.00 0.00 2.57
3381 3593 5.308497 TCCTCAGTTACACAAGGGTTCAATA 59.692 40.000 0.00 0.00 0.00 1.90
3382 3594 6.001460 CCTCAGTTACACAAGGGTTCAATAA 58.999 40.000 0.00 0.00 0.00 1.40
3383 3595 6.149474 CCTCAGTTACACAAGGGTTCAATAAG 59.851 42.308 0.00 0.00 0.00 1.73
3384 3596 6.833041 TCAGTTACACAAGGGTTCAATAAGA 58.167 36.000 0.00 0.00 0.00 2.10
3385 3597 6.934645 TCAGTTACACAAGGGTTCAATAAGAG 59.065 38.462 0.00 0.00 0.00 2.85
3386 3598 6.934645 CAGTTACACAAGGGTTCAATAAGAGA 59.065 38.462 0.00 0.00 0.00 3.10
3387 3599 7.444183 CAGTTACACAAGGGTTCAATAAGAGAA 59.556 37.037 0.00 0.00 0.00 2.87
3388 3600 8.164070 AGTTACACAAGGGTTCAATAAGAGAAT 58.836 33.333 0.00 0.00 0.00 2.40
3389 3601 9.444600 GTTACACAAGGGTTCAATAAGAGAATA 57.555 33.333 0.00 0.00 0.00 1.75
3392 3604 8.960591 ACACAAGGGTTCAATAAGAGAATAATG 58.039 33.333 0.00 0.00 0.00 1.90
3393 3605 8.960591 CACAAGGGTTCAATAAGAGAATAATGT 58.039 33.333 0.00 0.00 0.00 2.71
3394 3606 9.533831 ACAAGGGTTCAATAAGAGAATAATGTT 57.466 29.630 0.00 0.00 0.00 2.71
3397 3609 9.326413 AGGGTTCAATAAGAGAATAATGTTACG 57.674 33.333 0.00 0.00 0.00 3.18
3398 3610 9.321562 GGGTTCAATAAGAGAATAATGTTACGA 57.678 33.333 0.00 0.00 0.00 3.43
3413 3625 4.946445 TGTTACGAACATCACTGGTAACA 58.054 39.130 10.09 10.09 46.11 2.41
3414 3626 4.746115 TGTTACGAACATCACTGGTAACAC 59.254 41.667 10.09 0.00 44.51 3.32
3415 3627 2.762745 ACGAACATCACTGGTAACACC 58.237 47.619 0.00 0.00 46.17 4.16
3416 3628 2.073816 CGAACATCACTGGTAACACCC 58.926 52.381 0.00 0.00 46.17 4.61
3417 3629 2.073816 GAACATCACTGGTAACACCCG 58.926 52.381 0.00 0.00 46.17 5.28
3418 3630 1.053424 ACATCACTGGTAACACCCGT 58.947 50.000 0.00 0.00 46.17 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 1.176527 TGGTACTTTAGGGACCGACG 58.823 55.000 0.00 0.00 35.91 5.12
194 195 8.097038 ACATATATCATCCTAGACAAACGCAAT 58.903 33.333 0.00 0.00 0.00 3.56
363 364 6.233434 TGTTCTGCACTGAAGACAAGATAAT 58.767 36.000 0.00 0.00 0.00 1.28
860 890 8.617290 TGCGATCATACGAGGTACATATATAT 57.383 34.615 0.00 0.00 35.09 0.86
861 891 8.617290 ATGCGATCATACGAGGTACATATATA 57.383 34.615 0.00 0.00 35.09 0.86
921 952 2.368875 AGGTTGGTTTCGAGTGAGTGAT 59.631 45.455 0.00 0.00 0.00 3.06
968 999 0.540365 ATTGGTTCCTGTGGGCTGTG 60.540 55.000 0.00 0.00 0.00 3.66
969 1000 1.072266 TATTGGTTCCTGTGGGCTGT 58.928 50.000 0.00 0.00 0.00 4.40
970 1001 2.301346 GATATTGGTTCCTGTGGGCTG 58.699 52.381 0.00 0.00 0.00 4.85
971 1002 1.215423 GGATATTGGTTCCTGTGGGCT 59.785 52.381 0.00 0.00 0.00 5.19
972 1003 1.064017 TGGATATTGGTTCCTGTGGGC 60.064 52.381 0.00 0.00 34.17 5.36
973 1004 3.117550 TGATGGATATTGGTTCCTGTGGG 60.118 47.826 0.00 0.00 34.17 4.61
974 1005 4.169059 TGATGGATATTGGTTCCTGTGG 57.831 45.455 0.00 0.00 34.17 4.17
995 1026 1.224592 GGCGTGGACTCCATGGATT 59.775 57.895 16.63 10.19 40.61 3.01
1204 1238 3.516700 AGCTCAATGAAATTTTCAGGGGG 59.483 43.478 16.34 11.73 43.98 5.40
1207 1241 5.570589 GTCGAAGCTCAATGAAATTTTCAGG 59.429 40.000 16.34 11.33 43.98 3.86
1208 1242 5.282310 CGTCGAAGCTCAATGAAATTTTCAG 59.718 40.000 16.34 5.24 43.98 3.02
1249 1283 4.260139 TGCATGAAATTTGCAGACACAT 57.740 36.364 0.00 0.00 44.73 3.21
1296 1330 8.954950 TTATTTCAAGCAGATTTGGTCAAAAA 57.045 26.923 0.00 0.00 32.95 1.94
1350 1388 1.065491 TGTCCCCATCAAGATTGACGG 60.065 52.381 0.68 0.68 40.09 4.79
1379 1417 1.675641 GACTTTCAGCCGGGTGCAT 60.676 57.895 28.72 13.19 44.83 3.96
1390 1428 1.745232 ACAAGGTTGCACGACTTTCA 58.255 45.000 0.00 0.00 0.00 2.69
1403 1441 2.304761 ACACGGTATGGATGAACAAGGT 59.695 45.455 0.00 0.00 0.00 3.50
1422 1460 2.422231 GCACAACCCTGCACCAACA 61.422 57.895 0.00 0.00 37.11 3.33
1426 1464 3.297620 CCAGCACAACCCTGCACC 61.298 66.667 0.00 0.00 39.86 5.01
1445 1483 2.029073 CGTTGCCTCGTCAGTGGT 59.971 61.111 0.00 0.00 33.72 4.16
1481 1519 4.189580 ACCCTTGCGTGTGGCTGT 62.190 61.111 0.00 0.00 44.05 4.40
1493 1531 1.214589 CTGCGCGTAGTACACCCTT 59.785 57.895 16.66 0.00 0.00 3.95
1494 1532 2.882876 CTGCGCGTAGTACACCCT 59.117 61.111 16.66 0.00 0.00 4.34
1568 1606 2.436115 GCGTCCTTGTACCCCTGC 60.436 66.667 0.00 0.00 0.00 4.85
1595 1633 2.039624 ACCTGCTCCTCCGTCCAT 59.960 61.111 0.00 0.00 0.00 3.41
1611 1649 3.408851 GGGTTTCCACGCGTCGAC 61.409 66.667 9.86 5.18 0.00 4.20
1658 1696 4.686191 CCATATCTGGCAGAAGAAGAGT 57.314 45.455 22.84 5.46 35.23 3.24
1703 1741 8.598916 CAGGAGGAGATAGTAGAGTCATTACTA 58.401 40.741 2.67 2.67 37.84 1.82
1716 1754 7.264294 ACTTGAAAAATCAGGAGGAGATAGT 57.736 36.000 0.00 0.00 0.00 2.12
1720 1758 7.020827 ACATACTTGAAAAATCAGGAGGAGA 57.979 36.000 0.00 0.00 0.00 3.71
1794 1834 4.076394 TGCCCATTTGGTTGTAACTCTAC 58.924 43.478 0.00 0.00 36.04 2.59
1795 1835 4.331968 CTGCCCATTTGGTTGTAACTCTA 58.668 43.478 0.00 0.00 36.04 2.43
1847 1887 1.448119 CGGCGCTCATCTGAGGACTA 61.448 60.000 7.64 0.00 42.29 2.59
1865 1905 1.090625 ACTCCTCGAGACGACCATCG 61.091 60.000 15.71 0.00 38.31 3.84
1868 1908 2.552802 GAACTCCTCGAGACGACCA 58.447 57.895 15.71 0.00 33.32 4.02
1928 1968 3.124297 CAGCTTTTCTGAAGTCATCGACC 59.876 47.826 0.00 0.00 45.72 4.79
1949 1989 3.430862 GCGATGGCGTTCCTTGCA 61.431 61.111 0.00 0.00 40.36 4.08
1984 2024 7.511268 ACCAACAAAGTGAAGTAGTATTGGTA 58.489 34.615 3.08 0.00 44.10 3.25
2039 2242 6.488006 GGTTGCTTGGACATAGTATGATTGAT 59.512 38.462 17.13 0.00 0.00 2.57
2040 2243 5.822519 GGTTGCTTGGACATAGTATGATTGA 59.177 40.000 17.13 0.00 0.00 2.57
2041 2244 5.009010 GGGTTGCTTGGACATAGTATGATTG 59.991 44.000 17.13 3.71 0.00 2.67
2042 2245 5.103940 AGGGTTGCTTGGACATAGTATGATT 60.104 40.000 17.13 0.00 0.00 2.57
2051 2254 0.034089 GCCTAGGGTTGCTTGGACAT 60.034 55.000 11.72 0.00 0.00 3.06
2065 2268 2.210961 CATGCACACAGATCAGCCTAG 58.789 52.381 0.00 0.00 0.00 3.02
2067 2270 1.030488 GCATGCACACAGATCAGCCT 61.030 55.000 14.21 0.00 0.00 4.58
2070 2273 1.743394 ACATGCATGCACACAGATCAG 59.257 47.619 25.37 6.93 0.00 2.90
2124 2328 6.324770 TGAGGAACTGATCAATGATGTAGCTA 59.675 38.462 0.00 0.00 41.55 3.32
2416 2620 0.981183 AACAGACAATGCGGGACCTA 59.019 50.000 0.00 0.00 0.00 3.08
2427 2631 3.419793 CCTGAAGGGCAACAGACAA 57.580 52.632 0.00 0.00 36.38 3.18
2512 2716 2.181021 GTCAGTGTACCCCTCGCG 59.819 66.667 0.00 0.00 0.00 5.87
2535 2739 1.075374 AGGAACAACTGCCCATAAGCA 59.925 47.619 0.00 0.00 41.46 3.91
2546 2750 0.032615 TGGGTTTGCCAGGAACAACT 60.033 50.000 0.00 0.00 36.17 3.16
2548 2752 0.260230 TCTGGGTTTGCCAGGAACAA 59.740 50.000 0.00 0.00 36.11 2.83
2575 2779 1.294659 GCACTGAGCTCAAACCTCCG 61.295 60.000 18.85 6.60 41.15 4.63
2601 2805 8.255111 AGAATGTCATCCTGTCATAGTCATTA 57.745 34.615 0.00 0.00 0.00 1.90
2645 2849 1.053424 TGGATAATCGGTGTAGCCCC 58.947 55.000 0.00 0.00 0.00 5.80
2689 2893 3.391506 TCGATCATCCGATCTTTGCAT 57.608 42.857 0.00 0.00 45.11 3.96
2697 2901 6.494893 TTTTTGTTTCTTCGATCATCCGAT 57.505 33.333 0.00 0.00 38.45 4.18
2744 2950 9.919348 CAACCAAATTTCAGAAAAACTACAATG 57.081 29.630 0.00 0.00 0.00 2.82
2746 2952 8.930760 CACAACCAAATTTCAGAAAAACTACAA 58.069 29.630 0.00 0.00 0.00 2.41
2810 3016 7.653311 ACTCTTTTATTGAAACAAGATGGCAAC 59.347 33.333 0.00 0.00 0.00 4.17
2813 3019 7.327032 GTCACTCTTTTATTGAAACAAGATGGC 59.673 37.037 0.00 0.00 0.00 4.40
2922 3128 5.163774 TGTCCCGTGTGTAAACAAGTTTTAC 60.164 40.000 3.25 4.99 35.91 2.01
2941 3147 1.592223 CGGAGACCTTGTCTGTCCC 59.408 63.158 0.69 0.00 43.53 4.46
2945 3151 2.232298 GAGGCCGGAGACCTTGTCTG 62.232 65.000 5.05 0.00 43.53 3.51
2959 3165 1.810030 CAAGGACGTTAGCGAGGCC 60.810 63.158 5.81 0.00 42.00 5.19
2986 3197 7.823745 TTGGTCTTGCTTTTAGAAATCTCTT 57.176 32.000 0.00 0.00 32.70 2.85
2995 3206 9.346725 GAAAATAGTGATTGGTCTTGCTTTTAG 57.653 33.333 0.00 0.00 0.00 1.85
3002 3213 8.327941 TCTTGAGAAAATAGTGATTGGTCTTG 57.672 34.615 0.00 0.00 0.00 3.02
3014 3225 9.645059 TGATTGTAGTCACTCTTGAGAAAATAG 57.355 33.333 4.49 0.00 30.10 1.73
3016 3227 9.512588 AATGATTGTAGTCACTCTTGAGAAAAT 57.487 29.630 4.49 0.00 30.10 1.82
3037 3248 4.694982 TCGTCATGCAACAGTACAAATGAT 59.305 37.500 0.00 0.00 0.00 2.45
3047 3258 2.880822 ATCGTTTCGTCATGCAACAG 57.119 45.000 0.00 0.00 0.00 3.16
3052 3263 5.459110 TTTAGGTAATCGTTTCGTCATGC 57.541 39.130 0.00 0.00 0.00 4.06
3064 3275 9.669353 CACATCACATTTAGCATTTAGGTAATC 57.331 33.333 0.00 0.00 39.70 1.75
3066 3277 8.800370 TCACATCACATTTAGCATTTAGGTAA 57.200 30.769 0.00 0.00 38.35 2.85
3068 3279 6.183360 GCTCACATCACATTTAGCATTTAGGT 60.183 38.462 0.00 0.00 0.00 3.08
3069 3280 6.183360 TGCTCACATCACATTTAGCATTTAGG 60.183 38.462 0.00 0.00 35.20 2.69
3071 3282 6.756299 TGCTCACATCACATTTAGCATTTA 57.244 33.333 0.00 0.00 35.20 1.40
3072 3283 5.648178 TGCTCACATCACATTTAGCATTT 57.352 34.783 0.00 0.00 35.20 2.32
3087 3299 3.771479 ACAGTTCCAGATAGATGCTCACA 59.229 43.478 0.00 0.00 0.00 3.58
3099 3311 1.045407 AGGCGTAACACAGTTCCAGA 58.955 50.000 0.00 0.00 0.00 3.86
3113 3325 0.889186 GTTCCCATGACAACAGGCGT 60.889 55.000 0.00 0.00 0.00 5.68
3114 3326 0.888736 TGTTCCCATGACAACAGGCG 60.889 55.000 0.00 0.00 0.00 5.52
3115 3327 1.327303 TTGTTCCCATGACAACAGGC 58.673 50.000 0.00 0.00 34.07 4.85
3116 3328 3.828451 AGATTTGTTCCCATGACAACAGG 59.172 43.478 0.00 0.00 36.79 4.00
3117 3329 4.520111 TCAGATTTGTTCCCATGACAACAG 59.480 41.667 0.00 0.00 36.79 3.16
3118 3330 4.278170 GTCAGATTTGTTCCCATGACAACA 59.722 41.667 0.00 0.00 36.79 3.33
3119 3331 4.278170 TGTCAGATTTGTTCCCATGACAAC 59.722 41.667 3.52 0.00 42.79 3.32
3120 3332 4.468713 TGTCAGATTTGTTCCCATGACAA 58.531 39.130 3.52 0.00 42.79 3.18
3121 3333 4.074259 CTGTCAGATTTGTTCCCATGACA 58.926 43.478 5.78 5.78 43.33 3.58
3122 3334 4.074970 ACTGTCAGATTTGTTCCCATGAC 58.925 43.478 6.91 0.00 38.00 3.06
3123 3335 4.371624 ACTGTCAGATTTGTTCCCATGA 57.628 40.909 6.91 0.00 0.00 3.07
3124 3336 5.491070 TCTACTGTCAGATTTGTTCCCATG 58.509 41.667 6.91 0.00 0.00 3.66
3125 3337 5.485353 TCTCTACTGTCAGATTTGTTCCCAT 59.515 40.000 6.91 0.00 0.00 4.00
3126 3338 4.838423 TCTCTACTGTCAGATTTGTTCCCA 59.162 41.667 6.91 0.00 0.00 4.37
3127 3339 5.407407 TCTCTACTGTCAGATTTGTTCCC 57.593 43.478 6.91 0.00 0.00 3.97
3128 3340 7.206687 CCTATCTCTACTGTCAGATTTGTTCC 58.793 42.308 6.91 0.00 31.57 3.62
3129 3341 7.206687 CCCTATCTCTACTGTCAGATTTGTTC 58.793 42.308 6.91 0.00 31.57 3.18
3130 3342 6.098982 CCCCTATCTCTACTGTCAGATTTGTT 59.901 42.308 6.91 0.00 31.57 2.83
3131 3343 5.600484 CCCCTATCTCTACTGTCAGATTTGT 59.400 44.000 6.91 0.00 31.57 2.83
3132 3344 5.011533 CCCCCTATCTCTACTGTCAGATTTG 59.988 48.000 6.91 0.00 31.57 2.32
3133 3345 5.151454 CCCCCTATCTCTACTGTCAGATTT 58.849 45.833 6.91 0.00 31.57 2.17
3134 3346 4.171044 ACCCCCTATCTCTACTGTCAGATT 59.829 45.833 6.91 0.00 31.57 2.40
3135 3347 3.730059 ACCCCCTATCTCTACTGTCAGAT 59.270 47.826 6.91 7.21 33.75 2.90
3136 3348 3.132056 ACCCCCTATCTCTACTGTCAGA 58.868 50.000 6.91 0.00 0.00 3.27
3137 3349 3.603965 ACCCCCTATCTCTACTGTCAG 57.396 52.381 0.00 0.00 0.00 3.51
3138 3350 3.181447 CGTACCCCCTATCTCTACTGTCA 60.181 52.174 0.00 0.00 0.00 3.58
3139 3351 3.181446 ACGTACCCCCTATCTCTACTGTC 60.181 52.174 0.00 0.00 0.00 3.51
3140 3352 2.782341 ACGTACCCCCTATCTCTACTGT 59.218 50.000 0.00 0.00 0.00 3.55
3141 3353 3.505480 ACGTACCCCCTATCTCTACTG 57.495 52.381 0.00 0.00 0.00 2.74
3142 3354 3.586618 CCTACGTACCCCCTATCTCTACT 59.413 52.174 0.00 0.00 0.00 2.57
3143 3355 3.584848 TCCTACGTACCCCCTATCTCTAC 59.415 52.174 0.00 0.00 0.00 2.59
3144 3356 3.843027 CTCCTACGTACCCCCTATCTCTA 59.157 52.174 0.00 0.00 0.00 2.43
3145 3357 2.643801 CTCCTACGTACCCCCTATCTCT 59.356 54.545 0.00 0.00 0.00 3.10
3146 3358 2.641815 TCTCCTACGTACCCCCTATCTC 59.358 54.545 0.00 0.00 0.00 2.75
3147 3359 2.643801 CTCTCCTACGTACCCCCTATCT 59.356 54.545 0.00 0.00 0.00 1.98
3148 3360 2.290832 CCTCTCCTACGTACCCCCTATC 60.291 59.091 0.00 0.00 0.00 2.08
3149 3361 1.709679 CCTCTCCTACGTACCCCCTAT 59.290 57.143 0.00 0.00 0.00 2.57
3150 3362 1.143813 CCTCTCCTACGTACCCCCTA 58.856 60.000 0.00 0.00 0.00 3.53
3151 3363 1.653161 CCCTCTCCTACGTACCCCCT 61.653 65.000 0.00 0.00 0.00 4.79
3152 3364 1.152589 CCCTCTCCTACGTACCCCC 60.153 68.421 0.00 0.00 0.00 5.40
3153 3365 1.831726 GCCCTCTCCTACGTACCCC 60.832 68.421 0.00 0.00 0.00 4.95
3154 3366 1.076485 TGCCCTCTCCTACGTACCC 60.076 63.158 0.00 0.00 0.00 3.69
3155 3367 0.106819 TCTGCCCTCTCCTACGTACC 60.107 60.000 0.00 0.00 0.00 3.34
3156 3368 1.310904 CTCTGCCCTCTCCTACGTAC 58.689 60.000 0.00 0.00 0.00 3.67
3157 3369 0.917533 ACTCTGCCCTCTCCTACGTA 59.082 55.000 0.00 0.00 0.00 3.57
3158 3370 0.394625 GACTCTGCCCTCTCCTACGT 60.395 60.000 0.00 0.00 0.00 3.57
3159 3371 0.106918 AGACTCTGCCCTCTCCTACG 60.107 60.000 0.00 0.00 0.00 3.51
3160 3372 2.858745 CTAGACTCTGCCCTCTCCTAC 58.141 57.143 0.00 0.00 0.00 3.18
3161 3373 1.144093 GCTAGACTCTGCCCTCTCCTA 59.856 57.143 0.00 0.00 0.00 2.94
3162 3374 0.106217 GCTAGACTCTGCCCTCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
3163 3375 0.106217 AGCTAGACTCTGCCCTCTCC 60.106 60.000 0.00 0.00 0.00 3.71
3164 3376 2.227194 GTAGCTAGACTCTGCCCTCTC 58.773 57.143 0.00 0.00 0.00 3.20
3165 3377 1.476110 CGTAGCTAGACTCTGCCCTCT 60.476 57.143 0.00 0.00 0.00 3.69
3166 3378 0.948678 CGTAGCTAGACTCTGCCCTC 59.051 60.000 0.00 0.00 0.00 4.30
3167 3379 0.466555 CCGTAGCTAGACTCTGCCCT 60.467 60.000 0.00 0.00 0.00 5.19
3168 3380 2.034607 CCGTAGCTAGACTCTGCCC 58.965 63.158 0.00 0.00 0.00 5.36
3169 3381 1.360911 GCCGTAGCTAGACTCTGCC 59.639 63.158 0.00 0.00 35.50 4.85
3170 3382 1.009449 CGCCGTAGCTAGACTCTGC 60.009 63.158 0.00 0.00 36.60 4.26
3171 3383 0.584396 CTCGCCGTAGCTAGACTCTG 59.416 60.000 0.00 0.00 33.70 3.35
3172 3384 0.533308 CCTCGCCGTAGCTAGACTCT 60.533 60.000 0.00 0.00 33.70 3.24
3173 3385 0.814812 ACCTCGCCGTAGCTAGACTC 60.815 60.000 0.00 0.00 33.70 3.36
3174 3386 0.394080 AACCTCGCCGTAGCTAGACT 60.394 55.000 0.00 0.00 33.70 3.24
3175 3387 0.248539 CAACCTCGCCGTAGCTAGAC 60.249 60.000 0.00 0.00 33.70 2.59
3176 3388 0.679002 ACAACCTCGCCGTAGCTAGA 60.679 55.000 0.00 0.00 33.70 2.43
3177 3389 1.019673 TACAACCTCGCCGTAGCTAG 58.980 55.000 0.00 0.00 36.60 3.42
3178 3390 0.734889 GTACAACCTCGCCGTAGCTA 59.265 55.000 0.00 0.00 36.60 3.32
3179 3391 1.246056 TGTACAACCTCGCCGTAGCT 61.246 55.000 0.00 0.00 36.60 3.32
3180 3392 1.074872 GTGTACAACCTCGCCGTAGC 61.075 60.000 0.00 0.00 0.00 3.58
3181 3393 0.524862 AGTGTACAACCTCGCCGTAG 59.475 55.000 0.00 0.00 0.00 3.51
3182 3394 0.961019 AAGTGTACAACCTCGCCGTA 59.039 50.000 0.00 0.00 0.00 4.02
3183 3395 0.599204 CAAGTGTACAACCTCGCCGT 60.599 55.000 0.00 0.00 0.00 5.68
3184 3396 1.289109 CCAAGTGTACAACCTCGCCG 61.289 60.000 0.00 0.00 0.00 6.46
3185 3397 0.250166 ACCAAGTGTACAACCTCGCC 60.250 55.000 0.00 0.00 0.00 5.54
3186 3398 1.589803 AACCAAGTGTACAACCTCGC 58.410 50.000 0.00 0.00 0.00 5.03
3187 3399 4.318263 CGTAAAACCAAGTGTACAACCTCG 60.318 45.833 0.00 0.00 0.00 4.63
3188 3400 4.810491 TCGTAAAACCAAGTGTACAACCTC 59.190 41.667 0.00 0.00 0.00 3.85
3189 3401 4.571984 GTCGTAAAACCAAGTGTACAACCT 59.428 41.667 0.00 0.00 0.00 3.50
3190 3402 4.571984 AGTCGTAAAACCAAGTGTACAACC 59.428 41.667 0.00 0.00 0.00 3.77
3191 3403 5.723492 AGTCGTAAAACCAAGTGTACAAC 57.277 39.130 0.00 0.00 0.00 3.32
3192 3404 5.873712 TGAAGTCGTAAAACCAAGTGTACAA 59.126 36.000 0.00 0.00 0.00 2.41
3193 3405 5.417811 TGAAGTCGTAAAACCAAGTGTACA 58.582 37.500 0.00 0.00 0.00 2.90
3194 3406 5.050567 CCTGAAGTCGTAAAACCAAGTGTAC 60.051 44.000 0.00 0.00 0.00 2.90
3195 3407 5.051816 CCTGAAGTCGTAAAACCAAGTGTA 58.948 41.667 0.00 0.00 0.00 2.90
3196 3408 3.875134 CCTGAAGTCGTAAAACCAAGTGT 59.125 43.478 0.00 0.00 0.00 3.55
3197 3409 3.303791 GCCTGAAGTCGTAAAACCAAGTG 60.304 47.826 0.00 0.00 0.00 3.16
3198 3410 2.876550 GCCTGAAGTCGTAAAACCAAGT 59.123 45.455 0.00 0.00 0.00 3.16
3199 3411 2.225727 GGCCTGAAGTCGTAAAACCAAG 59.774 50.000 0.00 0.00 0.00 3.61
3200 3412 2.223745 GGCCTGAAGTCGTAAAACCAA 58.776 47.619 0.00 0.00 0.00 3.67
3201 3413 1.543871 GGGCCTGAAGTCGTAAAACCA 60.544 52.381 0.84 0.00 0.00 3.67
3202 3414 1.162698 GGGCCTGAAGTCGTAAAACC 58.837 55.000 0.84 0.00 0.00 3.27
3203 3415 1.162698 GGGGCCTGAAGTCGTAAAAC 58.837 55.000 0.84 0.00 0.00 2.43
3204 3416 1.061546 AGGGGCCTGAAGTCGTAAAA 58.938 50.000 0.84 0.00 0.00 1.52
3205 3417 1.061546 AAGGGGCCTGAAGTCGTAAA 58.938 50.000 0.84 0.00 0.00 2.01
3206 3418 1.002773 GAAAGGGGCCTGAAGTCGTAA 59.997 52.381 0.84 0.00 0.00 3.18
3207 3419 0.611714 GAAAGGGGCCTGAAGTCGTA 59.388 55.000 0.84 0.00 0.00 3.43
3208 3420 1.375326 GAAAGGGGCCTGAAGTCGT 59.625 57.895 0.84 0.00 0.00 4.34
3209 3421 1.741770 CGAAAGGGGCCTGAAGTCG 60.742 63.158 0.84 2.14 0.00 4.18
3210 3422 4.303257 CGAAAGGGGCCTGAAGTC 57.697 61.111 0.84 0.00 0.00 3.01
3222 3434 1.550976 AGCTGTTACCTCCTCCGAAAG 59.449 52.381 0.00 0.00 0.00 2.62
3223 3435 1.549170 GAGCTGTTACCTCCTCCGAAA 59.451 52.381 0.00 0.00 0.00 3.46
3224 3436 1.183549 GAGCTGTTACCTCCTCCGAA 58.816 55.000 0.00 0.00 0.00 4.30
3225 3437 0.331954 AGAGCTGTTACCTCCTCCGA 59.668 55.000 0.00 0.00 0.00 4.55
3226 3438 1.677052 GTAGAGCTGTTACCTCCTCCG 59.323 57.143 0.00 0.00 0.00 4.63
3227 3439 1.677052 CGTAGAGCTGTTACCTCCTCC 59.323 57.143 0.00 0.00 0.00 4.30
3228 3440 2.097791 CACGTAGAGCTGTTACCTCCTC 59.902 54.545 0.00 0.00 0.00 3.71
3229 3441 2.093106 CACGTAGAGCTGTTACCTCCT 58.907 52.381 0.00 0.00 0.00 3.69
3230 3442 1.817447 ACACGTAGAGCTGTTACCTCC 59.183 52.381 0.00 0.00 0.00 4.30
3231 3443 2.475852 CGACACGTAGAGCTGTTACCTC 60.476 54.545 0.00 0.00 0.00 3.85
3232 3444 1.467734 CGACACGTAGAGCTGTTACCT 59.532 52.381 0.00 0.00 0.00 3.08
3233 3445 1.467035 CCGACACGTAGAGCTGTTACC 60.467 57.143 0.00 0.00 0.00 2.85
3234 3446 1.198637 ACCGACACGTAGAGCTGTTAC 59.801 52.381 0.00 0.00 0.00 2.50
3235 3447 1.198408 CACCGACACGTAGAGCTGTTA 59.802 52.381 0.00 0.00 0.00 2.41
3236 3448 0.039437 CACCGACACGTAGAGCTGTT 60.039 55.000 0.00 0.00 0.00 3.16
3237 3449 1.579932 CACCGACACGTAGAGCTGT 59.420 57.895 0.00 0.00 0.00 4.40
3238 3450 1.801913 GCACCGACACGTAGAGCTG 60.802 63.158 0.00 0.00 0.00 4.24
3239 3451 2.567049 GCACCGACACGTAGAGCT 59.433 61.111 0.00 0.00 0.00 4.09
3240 3452 2.506438 GGCACCGACACGTAGAGC 60.506 66.667 0.00 0.00 0.00 4.09
3241 3453 1.136984 GAGGCACCGACACGTAGAG 59.863 63.158 0.00 0.00 0.00 2.43
3242 3454 2.683859 CGAGGCACCGACACGTAGA 61.684 63.158 0.00 0.00 0.00 2.59
3243 3455 2.202440 CGAGGCACCGACACGTAG 60.202 66.667 0.00 0.00 0.00 3.51
3244 3456 3.740397 CCGAGGCACCGACACGTA 61.740 66.667 0.00 0.00 0.00 3.57
3246 3458 4.778415 CTCCGAGGCACCGACACG 62.778 72.222 0.87 0.00 0.00 4.49
3247 3459 4.436998 CCTCCGAGGCACCGACAC 62.437 72.222 0.18 0.00 0.00 3.67
3256 3468 1.470098 CAATCAACAAAGCCTCCGAGG 59.530 52.381 10.41 10.41 38.80 4.63
3257 3469 1.470098 CCAATCAACAAAGCCTCCGAG 59.530 52.381 0.00 0.00 0.00 4.63
3258 3470 1.073125 TCCAATCAACAAAGCCTCCGA 59.927 47.619 0.00 0.00 0.00 4.55
3259 3471 1.470098 CTCCAATCAACAAAGCCTCCG 59.530 52.381 0.00 0.00 0.00 4.63
3260 3472 2.229784 CACTCCAATCAACAAAGCCTCC 59.770 50.000 0.00 0.00 0.00 4.30
3261 3473 2.887152 ACACTCCAATCAACAAAGCCTC 59.113 45.455 0.00 0.00 0.00 4.70
3262 3474 2.949447 ACACTCCAATCAACAAAGCCT 58.051 42.857 0.00 0.00 0.00 4.58
3263 3475 3.068024 TCAACACTCCAATCAACAAAGCC 59.932 43.478 0.00 0.00 0.00 4.35
3264 3476 4.202050 ACTCAACACTCCAATCAACAAAGC 60.202 41.667 0.00 0.00 0.00 3.51
3265 3477 5.505173 ACTCAACACTCCAATCAACAAAG 57.495 39.130 0.00 0.00 0.00 2.77
3266 3478 5.913137 AACTCAACACTCCAATCAACAAA 57.087 34.783 0.00 0.00 0.00 2.83
3267 3479 5.883115 TGTAACTCAACACTCCAATCAACAA 59.117 36.000 0.00 0.00 0.00 2.83
3268 3480 5.432645 TGTAACTCAACACTCCAATCAACA 58.567 37.500 0.00 0.00 0.00 3.33
3269 3481 6.373779 CATGTAACTCAACACTCCAATCAAC 58.626 40.000 0.00 0.00 30.75 3.18
3270 3482 5.473162 CCATGTAACTCAACACTCCAATCAA 59.527 40.000 0.00 0.00 30.75 2.57
3271 3483 5.003160 CCATGTAACTCAACACTCCAATCA 58.997 41.667 0.00 0.00 30.75 2.57
3272 3484 4.396166 CCCATGTAACTCAACACTCCAATC 59.604 45.833 0.00 0.00 30.75 2.67
3273 3485 4.335416 CCCATGTAACTCAACACTCCAAT 58.665 43.478 0.00 0.00 30.75 3.16
3274 3486 3.497763 CCCCATGTAACTCAACACTCCAA 60.498 47.826 0.00 0.00 30.75 3.53
3275 3487 2.039746 CCCCATGTAACTCAACACTCCA 59.960 50.000 0.00 0.00 30.75 3.86
3276 3488 2.039879 ACCCCATGTAACTCAACACTCC 59.960 50.000 0.00 0.00 30.75 3.85
3277 3489 3.074412 CACCCCATGTAACTCAACACTC 58.926 50.000 0.00 0.00 30.75 3.51
3278 3490 2.814097 GCACCCCATGTAACTCAACACT 60.814 50.000 0.00 0.00 30.75 3.55
3279 3491 1.539827 GCACCCCATGTAACTCAACAC 59.460 52.381 0.00 0.00 30.75 3.32
3280 3492 1.880221 CGCACCCCATGTAACTCAACA 60.880 52.381 0.00 0.00 0.00 3.33
3281 3493 0.802494 CGCACCCCATGTAACTCAAC 59.198 55.000 0.00 0.00 0.00 3.18
3282 3494 0.322098 CCGCACCCCATGTAACTCAA 60.322 55.000 0.00 0.00 0.00 3.02
3283 3495 1.298340 CCGCACCCCATGTAACTCA 59.702 57.895 0.00 0.00 0.00 3.41
3284 3496 1.451387 CCCGCACCCCATGTAACTC 60.451 63.158 0.00 0.00 0.00 3.01
3285 3497 2.674754 CCCGCACCCCATGTAACT 59.325 61.111 0.00 0.00 0.00 2.24
3286 3498 2.439519 CCCCGCACCCCATGTAAC 60.440 66.667 0.00 0.00 0.00 2.50
3287 3499 4.434354 GCCCCGCACCCCATGTAA 62.434 66.667 0.00 0.00 0.00 2.41
3303 3515 1.077429 CTCCCCTTAGGCACAAGGC 60.077 63.158 11.36 0.00 43.30 4.35
3304 3516 1.609783 CCTCCCCTTAGGCACAAGG 59.390 63.158 10.16 10.16 44.11 3.61
3305 3517 0.914417 TCCCTCCCCTTAGGCACAAG 60.914 60.000 0.00 0.00 35.09 3.16
3306 3518 0.253630 ATCCCTCCCCTTAGGCACAA 60.254 55.000 0.00 0.00 35.09 3.33
3307 3519 0.988145 CATCCCTCCCCTTAGGCACA 60.988 60.000 0.00 0.00 35.09 4.57
3308 3520 1.709994 CCATCCCTCCCCTTAGGCAC 61.710 65.000 0.00 0.00 35.09 5.01
3309 3521 1.385915 CCATCCCTCCCCTTAGGCA 60.386 63.158 0.00 0.00 35.09 4.75
3310 3522 2.835049 GCCATCCCTCCCCTTAGGC 61.835 68.421 0.00 0.00 35.09 3.93
3311 3523 0.699231 AAGCCATCCCTCCCCTTAGG 60.699 60.000 0.00 0.00 36.30 2.69
3312 3524 2.118403 TAAGCCATCCCTCCCCTTAG 57.882 55.000 0.00 0.00 0.00 2.18
3313 3525 2.835696 ATAAGCCATCCCTCCCCTTA 57.164 50.000 0.00 0.00 0.00 2.69
3314 3526 2.835696 TATAAGCCATCCCTCCCCTT 57.164 50.000 0.00 0.00 0.00 3.95
3315 3527 3.607575 TCTATATAAGCCATCCCTCCCCT 59.392 47.826 0.00 0.00 0.00 4.79
3316 3528 3.970640 CTCTATATAAGCCATCCCTCCCC 59.029 52.174 0.00 0.00 0.00 4.81
3317 3529 4.407296 CACTCTATATAAGCCATCCCTCCC 59.593 50.000 0.00 0.00 0.00 4.30
3318 3530 4.141824 GCACTCTATATAAGCCATCCCTCC 60.142 50.000 0.00 0.00 0.00 4.30
3319 3531 4.440802 CGCACTCTATATAAGCCATCCCTC 60.441 50.000 0.00 0.00 0.00 4.30
3320 3532 3.449018 CGCACTCTATATAAGCCATCCCT 59.551 47.826 0.00 0.00 0.00 4.20
3321 3533 3.786635 CGCACTCTATATAAGCCATCCC 58.213 50.000 0.00 0.00 0.00 3.85
3322 3534 3.190874 GCGCACTCTATATAAGCCATCC 58.809 50.000 0.30 0.00 0.00 3.51
3323 3535 3.190874 GGCGCACTCTATATAAGCCATC 58.809 50.000 10.83 0.00 42.37 3.51
3324 3536 2.417379 CGGCGCACTCTATATAAGCCAT 60.417 50.000 10.83 0.00 42.90 4.40
3325 3537 1.067846 CGGCGCACTCTATATAAGCCA 60.068 52.381 10.83 0.00 42.90 4.75
3326 3538 1.201647 TCGGCGCACTCTATATAAGCC 59.798 52.381 10.83 0.00 39.68 4.35
3327 3539 2.251893 GTCGGCGCACTCTATATAAGC 58.748 52.381 10.83 0.00 0.00 3.09
3328 3540 2.415625 GGGTCGGCGCACTCTATATAAG 60.416 54.545 10.83 0.00 0.00 1.73
3329 3541 1.542915 GGGTCGGCGCACTCTATATAA 59.457 52.381 10.83 0.00 0.00 0.98
3330 3542 1.171308 GGGTCGGCGCACTCTATATA 58.829 55.000 10.83 0.00 0.00 0.86
3331 3543 1.533469 GGGGTCGGCGCACTCTATAT 61.533 60.000 10.83 0.00 0.00 0.86
3332 3544 2.198287 GGGGTCGGCGCACTCTATA 61.198 63.158 10.83 0.00 0.00 1.31
3333 3545 3.537874 GGGGTCGGCGCACTCTAT 61.538 66.667 10.83 0.00 0.00 1.98
3334 3546 4.753662 AGGGGTCGGCGCACTCTA 62.754 66.667 10.83 0.00 0.00 2.43
3343 3555 3.316573 GAGGACTGCAAGGGGTCGG 62.317 68.421 0.00 0.00 39.30 4.79
3344 3556 2.266055 GAGGACTGCAAGGGGTCG 59.734 66.667 0.00 0.00 39.30 4.79
3345 3557 1.298014 CTGAGGACTGCAAGGGGTC 59.702 63.158 0.00 0.00 39.30 4.46
3346 3558 1.062488 AACTGAGGACTGCAAGGGGT 61.062 55.000 0.00 0.00 39.30 4.95
3347 3559 0.984230 TAACTGAGGACTGCAAGGGG 59.016 55.000 0.00 0.00 39.30 4.79
3348 3560 1.347707 TGTAACTGAGGACTGCAAGGG 59.652 52.381 0.00 0.00 39.30 3.95
3349 3561 2.224281 TGTGTAACTGAGGACTGCAAGG 60.224 50.000 0.00 0.00 36.10 3.61
3350 3562 3.111853 TGTGTAACTGAGGACTGCAAG 57.888 47.619 0.00 0.00 38.04 4.01
3351 3563 3.466836 CTTGTGTAACTGAGGACTGCAA 58.533 45.455 0.00 0.00 38.04 4.08
3352 3564 2.224281 CCTTGTGTAACTGAGGACTGCA 60.224 50.000 0.00 0.00 41.41 4.41
3353 3565 2.417719 CCTTGTGTAACTGAGGACTGC 58.582 52.381 0.00 0.00 41.41 4.40
3354 3566 2.368875 ACCCTTGTGTAACTGAGGACTG 59.631 50.000 0.00 0.00 41.41 3.51
3355 3567 2.690840 ACCCTTGTGTAACTGAGGACT 58.309 47.619 0.00 0.00 41.41 3.85
3356 3568 3.181458 TGAACCCTTGTGTAACTGAGGAC 60.181 47.826 0.00 0.00 41.41 3.85
3357 3569 3.042682 TGAACCCTTGTGTAACTGAGGA 58.957 45.455 0.00 0.00 41.41 3.71
3358 3570 3.485463 TGAACCCTTGTGTAACTGAGG 57.515 47.619 0.00 0.00 39.52 3.86
3359 3571 6.934645 TCTTATTGAACCCTTGTGTAACTGAG 59.065 38.462 0.00 0.00 38.04 3.35
3360 3572 6.833041 TCTTATTGAACCCTTGTGTAACTGA 58.167 36.000 0.00 0.00 38.04 3.41
3361 3573 6.934645 TCTCTTATTGAACCCTTGTGTAACTG 59.065 38.462 0.00 0.00 38.04 3.16
3362 3574 7.074653 TCTCTTATTGAACCCTTGTGTAACT 57.925 36.000 0.00 0.00 38.04 2.24
3363 3575 7.739498 TTCTCTTATTGAACCCTTGTGTAAC 57.261 36.000 0.00 0.00 37.35 2.50
3366 3578 8.960591 CATTATTCTCTTATTGAACCCTTGTGT 58.039 33.333 0.00 0.00 0.00 3.72
3367 3579 8.960591 ACATTATTCTCTTATTGAACCCTTGTG 58.039 33.333 0.00 0.00 0.00 3.33
3368 3580 9.533831 AACATTATTCTCTTATTGAACCCTTGT 57.466 29.630 0.00 0.00 0.00 3.16
3371 3583 9.326413 CGTAACATTATTCTCTTATTGAACCCT 57.674 33.333 0.00 0.00 0.00 4.34
3372 3584 9.321562 TCGTAACATTATTCTCTTATTGAACCC 57.678 33.333 0.00 0.00 0.00 4.11
3389 3601 8.902659 GGTGTTACCAGTGATGTTCGTAACATT 61.903 40.741 17.71 2.06 46.05 2.71
3390 3602 7.507425 GGTGTTACCAGTGATGTTCGTAACAT 61.507 42.308 17.71 11.40 46.05 2.71
3391 3603 4.746115 GTGTTACCAGTGATGTTCGTAACA 59.254 41.667 13.30 13.30 43.79 2.41
3392 3604 4.151157 GGTGTTACCAGTGATGTTCGTAAC 59.849 45.833 9.57 9.57 38.42 2.50
3393 3605 4.309099 GGTGTTACCAGTGATGTTCGTAA 58.691 43.478 0.00 0.00 38.42 3.18
3394 3606 3.306225 GGGTGTTACCAGTGATGTTCGTA 60.306 47.826 0.00 0.00 41.02 3.43
3395 3607 2.549349 GGGTGTTACCAGTGATGTTCGT 60.549 50.000 0.00 0.00 41.02 3.85
3396 3608 2.073816 GGGTGTTACCAGTGATGTTCG 58.926 52.381 0.00 0.00 41.02 3.95
3397 3609 2.073816 CGGGTGTTACCAGTGATGTTC 58.926 52.381 0.00 0.00 41.02 3.18
3398 3610 1.418637 ACGGGTGTTACCAGTGATGTT 59.581 47.619 2.99 0.00 44.92 2.71
3399 3611 1.053424 ACGGGTGTTACCAGTGATGT 58.947 50.000 2.99 0.00 44.92 3.06
3400 3612 3.927555 ACGGGTGTTACCAGTGATG 57.072 52.632 2.99 0.00 44.92 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.