Multiple sequence alignment - TraesCS1B01G230500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G230500 chr1B 100.000 4305 0 0 1 4305 414161644 414157340 0.000000e+00 7950.0
1 TraesCS1B01G230500 chr1B 95.385 195 9 0 4111 4305 414145738 414145544 1.160000e-80 311.0
2 TraesCS1B01G230500 chr1B 94.359 195 11 0 4111 4305 414144318 414144124 2.520000e-77 300.0
3 TraesCS1B01G230500 chr1B 87.582 153 14 5 3630 3777 6754045 6753893 5.720000e-39 172.0
4 TraesCS1B01G230500 chr1B 89.209 139 14 1 3631 3768 623687706 623687568 5.720000e-39 172.0
5 TraesCS1B01G230500 chr1B 88.430 121 12 2 2542 2661 414158989 414158870 1.250000e-30 145.0
6 TraesCS1B01G230500 chr1B 88.430 121 12 2 2656 2775 414159103 414158984 1.250000e-30 145.0
7 TraesCS1B01G230500 chr1A 89.203 1556 88 44 785 2319 385353255 385351759 0.000000e+00 1869.0
8 TraesCS1B01G230500 chr1A 93.408 986 45 12 2656 3632 385351549 385350575 0.000000e+00 1443.0
9 TraesCS1B01G230500 chr1A 90.000 290 16 2 367 644 385353871 385353583 3.160000e-96 363.0
10 TraesCS1B01G230500 chr1A 88.889 288 27 3 62 349 385354139 385353857 2.460000e-92 350.0
11 TraesCS1B01G230500 chr1A 84.887 311 38 7 3758 4062 385350573 385350266 5.410000e-79 305.0
12 TraesCS1B01G230500 chr1A 89.451 237 23 2 2426 2661 385351665 385351430 9.050000e-77 298.0
13 TraesCS1B01G230500 chr1A 87.179 195 24 1 4111 4305 461242754 461242561 2.020000e-53 220.0
14 TraesCS1B01G230500 chr1A 86.822 129 9 3 648 768 385353495 385353367 2.090000e-28 137.0
15 TraesCS1B01G230500 chr1A 86.154 130 13 4 2536 2661 79696179 79696307 7.510000e-28 135.0
16 TraesCS1B01G230500 chr1D 90.623 1397 62 36 833 2211 306671185 306669840 0.000000e+00 1790.0
17 TraesCS1B01G230500 chr1D 94.685 922 28 11 2721 3632 306668960 306668050 0.000000e+00 1411.0
18 TraesCS1B01G230500 chr1D 94.707 529 28 0 2208 2736 306669540 306669012 0.000000e+00 822.0
19 TraesCS1B01G230500 chr1D 86.842 266 19 4 367 620 306671622 306671361 2.530000e-72 283.0
20 TraesCS1B01G230500 chr1D 82.653 294 24 10 62 352 306671874 306671605 7.200000e-58 235.0
21 TraesCS1B01G230500 chr1D 87.770 139 11 6 2656 2793 306669206 306669073 1.600000e-34 158.0
22 TraesCS1B01G230500 chr1D 89.062 128 10 4 3758 3883 306668036 306667911 5.760000e-34 156.0
23 TraesCS1B01G230500 chr2D 94.416 197 9 1 4111 4305 20357632 20357436 7.000000e-78 302.0
24 TraesCS1B01G230500 chr2D 79.618 314 50 11 2647 2951 526115469 526115161 3.370000e-51 213.0
25 TraesCS1B01G230500 chr2D 85.366 164 21 3 3631 3791 452294220 452294057 2.660000e-37 167.0
26 TraesCS1B01G230500 chr2D 95.000 100 4 1 1764 1862 122055548 122055647 5.760000e-34 156.0
27 TraesCS1B01G230500 chr2D 89.474 57 4 2 4062 4116 290740026 290740082 2.150000e-08 71.3
28 TraesCS1B01G230500 chr3A 91.710 193 15 1 4111 4303 731515404 731515213 2.550000e-67 267.0
29 TraesCS1B01G230500 chr3A 90.722 194 17 1 4112 4305 731516828 731516636 1.540000e-64 257.0
30 TraesCS1B01G230500 chr3A 92.727 110 5 3 1764 1870 655650908 655650799 5.760000e-34 156.0
31 TraesCS1B01G230500 chr7B 96.129 155 6 0 4151 4305 749333675 749333521 1.990000e-63 254.0
32 TraesCS1B01G230500 chr7B 94.531 128 6 1 3630 3756 46905993 46905866 3.400000e-46 196.0
33 TraesCS1B01G230500 chr7B 93.846 130 7 1 3628 3756 395246221 395246350 1.220000e-45 195.0
34 TraesCS1B01G230500 chr7B 89.865 148 13 2 3630 3776 707108023 707107877 5.680000e-44 189.0
35 TraesCS1B01G230500 chr7B 85.366 164 21 3 3631 3791 126893247 126893084 2.660000e-37 167.0
36 TraesCS1B01G230500 chr5A 84.825 257 26 9 2656 2906 338391531 338391282 3.320000e-61 246.0
37 TraesCS1B01G230500 chr5A 90.265 113 8 3 1755 1864 688958263 688958375 1.250000e-30 145.0
38 TraesCS1B01G230500 chr7A 80.731 301 45 8 2658 2949 55017886 55018182 5.600000e-54 222.0
39 TraesCS1B01G230500 chr7A 93.233 133 7 2 3628 3758 736384094 736383962 1.220000e-45 195.0
40 TraesCS1B01G230500 chr7A 77.517 298 45 13 2658 2949 55009028 55009309 4.460000e-35 159.0
41 TraesCS1B01G230500 chr7A 86.154 130 14 3 2536 2661 515273638 515273509 2.090000e-28 137.0
42 TraesCS1B01G230500 chr2A 93.233 133 7 2 3630 3761 753531299 753531430 1.220000e-45 195.0
43 TraesCS1B01G230500 chr2A 87.162 148 16 3 3622 3767 706994770 706994916 9.580000e-37 165.0
44 TraesCS1B01G230500 chr2A 94.949 99 5 0 1764 1862 126483430 126483528 5.760000e-34 156.0
45 TraesCS1B01G230500 chr4B 93.750 128 7 1 3630 3756 107450869 107450742 1.580000e-44 191.0
46 TraesCS1B01G230500 chr4B 95.745 47 2 0 4062 4108 584057464 584057418 4.620000e-10 76.8
47 TraesCS1B01G230500 chr3B 92.537 134 8 2 3624 3756 407477758 407477890 1.580000e-44 191.0
48 TraesCS1B01G230500 chr3B 94.286 105 5 1 1767 1870 685064602 685064498 4.460000e-35 159.0
49 TraesCS1B01G230500 chr3B 88.976 127 13 1 3631 3756 173656419 173656545 5.760000e-34 156.0
50 TraesCS1B01G230500 chr3B 92.308 52 4 0 4062 4113 62664257 62664308 1.660000e-09 75.0
51 TraesCS1B01G230500 chr2B 93.750 128 7 1 3631 3757 503431284 503431411 1.580000e-44 191.0
52 TraesCS1B01G230500 chr2B 91.971 137 9 2 3621 3756 517436874 517437009 1.580000e-44 191.0
53 TraesCS1B01G230500 chr2B 80.162 247 34 11 2659 2894 18263903 18263661 2.060000e-38 171.0
54 TraesCS1B01G230500 chr2B 88.636 132 14 1 3630 3760 792481538 792481669 4.460000e-35 159.0
55 TraesCS1B01G230500 chr2B 94.059 101 4 1 1764 1862 175075226 175075326 7.460000e-33 152.0
56 TraesCS1B01G230500 chr2B 95.918 49 2 0 4062 4110 93117440 93117488 3.570000e-11 80.5
57 TraesCS1B01G230500 chr2B 91.071 56 4 1 4065 4119 84975577 84975522 1.660000e-09 75.0
58 TraesCS1B01G230500 chr5D 79.923 259 38 11 2657 2906 229153054 229152801 1.230000e-40 178.0
59 TraesCS1B01G230500 chr5D 80.488 164 24 6 2529 2689 458189512 458189354 7.560000e-23 119.0
60 TraesCS1B01G230500 chr5D 92.593 54 3 1 4062 4114 178526761 178526708 4.620000e-10 76.8
61 TraesCS1B01G230500 chr5D 94.000 50 3 0 4062 4111 464702732 464702781 4.620000e-10 76.8
62 TraesCS1B01G230500 chr6B 90.551 127 11 1 3631 3756 65160857 65160983 2.660000e-37 167.0
63 TraesCS1B01G230500 chr6B 91.304 115 6 2 2782 2894 548118891 548118779 2.070000e-33 154.0
64 TraesCS1B01G230500 chr6A 86.957 138 14 4 1722 1857 38556492 38556627 7.460000e-33 152.0
65 TraesCS1B01G230500 chr4A 83.007 153 19 5 2536 2685 27552378 27552526 9.710000e-27 132.0
66 TraesCS1B01G230500 chr4A 82.692 156 20 5 2533 2685 579395511 579395662 9.710000e-27 132.0
67 TraesCS1B01G230500 chr4A 95.745 47 2 0 4065 4111 701959175 701959129 4.620000e-10 76.8
68 TraesCS1B01G230500 chr3D 81.529 157 21 7 2536 2689 482487853 482488004 5.850000e-24 122.0
69 TraesCS1B01G230500 chr5B 92.857 56 4 0 4062 4117 674377719 674377774 9.920000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G230500 chr1B 414157340 414161644 4304 True 2746.666667 7950 92.286667 1 4305 3 chr1B.!!$R4 4304
1 TraesCS1B01G230500 chr1B 414144124 414145738 1614 True 305.500000 311 94.872000 4111 4305 2 chr1B.!!$R3 194
2 TraesCS1B01G230500 chr1A 385350266 385354139 3873 True 680.714286 1869 88.951429 62 4062 7 chr1A.!!$R2 4000
3 TraesCS1B01G230500 chr1D 306667911 306671874 3963 True 693.571429 1790 89.477429 62 3883 7 chr1D.!!$R1 3821
4 TraesCS1B01G230500 chr3A 731515213 731516828 1615 True 262.000000 267 91.216000 4111 4305 2 chr3A.!!$R2 194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 1109 0.099968 CCATCATCAACAAGGCAGCG 59.900 55.0 0.0 0.0 0.00 5.18 F
1497 1752 0.036952 AGTACGACGACCTCCTCGAA 60.037 55.0 0.0 0.0 46.14 3.71 F
2395 2965 0.114168 ATGCCTGTTGGTGCCCTTTA 59.886 50.0 0.0 0.0 35.27 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2248 0.182537 AGGCTTGTAACACAGGTGCA 59.817 50.000 0.0 0.0 0.0 4.57 R
2469 3061 1.202336 GCAATCAAATGAGCTTCGGGG 60.202 52.381 0.0 0.0 0.0 5.73 R
3745 4414 0.106167 TCACCCATCTACTCCCTCCG 60.106 60.000 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.119931 TGGAAATTCAACCGATTTCTGTG 57.880 39.130 8.83 0.00 35.35 3.66
23 24 4.824537 TGGAAATTCAACCGATTTCTGTGA 59.175 37.500 8.83 0.00 35.35 3.58
24 25 5.300539 TGGAAATTCAACCGATTTCTGTGAA 59.699 36.000 8.83 0.00 35.35 3.18
25 26 6.183360 TGGAAATTCAACCGATTTCTGTGAAA 60.183 34.615 8.83 0.00 35.35 2.69
26 27 6.868339 GGAAATTCAACCGATTTCTGTGAAAT 59.132 34.615 5.36 5.36 35.35 2.17
27 28 7.384932 GGAAATTCAACCGATTTCTGTGAAATT 59.615 33.333 6.93 0.00 35.35 1.82
28 29 8.661352 AAATTCAACCGATTTCTGTGAAATTT 57.339 26.923 6.93 0.00 0.00 1.82
29 30 9.757227 AAATTCAACCGATTTCTGTGAAATTTA 57.243 25.926 6.93 0.00 0.00 1.40
30 31 8.742554 ATTCAACCGATTTCTGTGAAATTTAC 57.257 30.769 6.93 0.00 0.00 2.01
31 32 7.265647 TCAACCGATTTCTGTGAAATTTACA 57.734 32.000 6.93 0.00 0.00 2.41
32 33 7.881142 TCAACCGATTTCTGTGAAATTTACAT 58.119 30.769 6.93 0.00 0.00 2.29
33 34 7.807433 TCAACCGATTTCTGTGAAATTTACATG 59.193 33.333 6.93 0.00 0.00 3.21
34 35 6.092748 ACCGATTTCTGTGAAATTTACATGC 58.907 36.000 6.93 0.00 0.00 4.06
35 36 6.071952 ACCGATTTCTGTGAAATTTACATGCT 60.072 34.615 6.93 0.00 0.00 3.79
36 37 6.808212 CCGATTTCTGTGAAATTTACATGCTT 59.192 34.615 6.93 0.00 0.00 3.91
37 38 7.201376 CCGATTTCTGTGAAATTTACATGCTTG 60.201 37.037 6.93 0.00 0.00 4.01
38 39 7.538334 CGATTTCTGTGAAATTTACATGCTTGA 59.462 33.333 6.60 0.00 0.00 3.02
39 40 9.195411 GATTTCTGTGAAATTTACATGCTTGAA 57.805 29.630 6.60 0.00 0.00 2.69
40 41 8.939201 TTTCTGTGAAATTTACATGCTTGAAA 57.061 26.923 6.60 3.59 0.00 2.69
41 42 7.928908 TCTGTGAAATTTACATGCTTGAAAC 57.071 32.000 6.60 0.00 0.00 2.78
42 43 7.487484 TCTGTGAAATTTACATGCTTGAAACA 58.513 30.769 6.60 0.00 0.00 2.83
43 44 7.434897 TCTGTGAAATTTACATGCTTGAAACAC 59.565 33.333 6.60 7.73 0.00 3.32
44 45 7.038048 TGTGAAATTTACATGCTTGAAACACA 58.962 30.769 6.60 9.66 0.00 3.72
45 46 7.710044 TGTGAAATTTACATGCTTGAAACACAT 59.290 29.630 6.60 0.00 0.00 3.21
46 47 8.550376 GTGAAATTTACATGCTTGAAACACATT 58.450 29.630 6.60 0.00 0.00 2.71
47 48 9.107177 TGAAATTTACATGCTTGAAACACATTT 57.893 25.926 6.60 2.60 0.00 2.32
48 49 9.934190 GAAATTTACATGCTTGAAACACATTTT 57.066 25.926 6.60 1.30 0.00 1.82
49 50 9.934190 AAATTTACATGCTTGAAACACATTTTC 57.066 25.926 6.60 0.00 0.00 2.29
50 51 8.891671 ATTTACATGCTTGAAACACATTTTCT 57.108 26.923 6.60 0.00 0.00 2.52
51 52 7.928908 TTACATGCTTGAAACACATTTTCTC 57.071 32.000 6.60 0.00 0.00 2.87
52 53 4.977963 ACATGCTTGAAACACATTTTCTCG 59.022 37.500 6.60 0.00 0.00 4.04
53 54 3.963665 TGCTTGAAACACATTTTCTCGG 58.036 40.909 0.00 0.00 0.00 4.63
54 55 3.380004 TGCTTGAAACACATTTTCTCGGT 59.620 39.130 0.00 0.00 0.00 4.69
55 56 3.730715 GCTTGAAACACATTTTCTCGGTG 59.269 43.478 0.00 0.00 38.47 4.94
56 57 4.733523 GCTTGAAACACATTTTCTCGGTGT 60.734 41.667 0.00 0.00 46.92 4.16
57 58 4.285807 TGAAACACATTTTCTCGGTGTG 57.714 40.909 0.00 3.42 44.40 3.82
58 59 2.774439 AACACATTTTCTCGGTGTGC 57.226 45.000 4.78 0.00 44.40 4.57
59 60 0.951558 ACACATTTTCTCGGTGTGCC 59.048 50.000 4.78 0.00 45.31 5.01
60 61 1.238439 CACATTTTCTCGGTGTGCCT 58.762 50.000 0.00 0.00 37.09 4.75
78 79 4.870991 GTGCCTAGTAACAAAGAGCTTAGG 59.129 45.833 0.00 0.00 0.00 2.69
82 83 5.755861 CCTAGTAACAAAGAGCTTAGGATGC 59.244 44.000 0.00 0.00 0.00 3.91
113 114 2.263540 CCGGTGGTCGTTACAGGG 59.736 66.667 0.00 0.00 37.11 4.45
198 201 7.973944 AGAAAAGTACAAACACACAGAATTTCC 59.026 33.333 0.00 0.00 0.00 3.13
224 227 1.625616 ATACGTAGCGCACAAGTGTC 58.374 50.000 11.47 0.00 0.00 3.67
237 240 1.568612 AAGTGTCTTCGCGTGGCATG 61.569 55.000 5.77 1.31 0.00 4.06
272 275 0.469070 AGCCTCATCTGATCACAGGC 59.531 55.000 18.12 18.12 43.60 4.85
276 279 2.562635 CTCATCTGATCACAGGCAAGG 58.437 52.381 0.00 0.00 43.60 3.61
334 337 5.468746 GTGTAGTACAAGATTGCAGGTTTCA 59.531 40.000 4.11 0.00 0.00 2.69
335 338 5.700832 TGTAGTACAAGATTGCAGGTTTCAG 59.299 40.000 0.00 0.00 0.00 3.02
336 339 3.503748 AGTACAAGATTGCAGGTTTCAGC 59.496 43.478 0.00 0.00 0.00 4.26
337 340 2.590821 ACAAGATTGCAGGTTTCAGCT 58.409 42.857 0.00 0.00 0.00 4.24
338 341 2.961062 ACAAGATTGCAGGTTTCAGCTT 59.039 40.909 0.00 0.00 0.00 3.74
339 342 3.005155 ACAAGATTGCAGGTTTCAGCTTC 59.995 43.478 0.00 0.00 0.00 3.86
340 343 3.151912 AGATTGCAGGTTTCAGCTTCT 57.848 42.857 0.00 0.00 0.00 2.85
341 344 4.292186 AGATTGCAGGTTTCAGCTTCTA 57.708 40.909 0.00 0.00 0.00 2.10
342 345 4.853007 AGATTGCAGGTTTCAGCTTCTAT 58.147 39.130 0.00 0.00 0.00 1.98
343 346 5.259632 AGATTGCAGGTTTCAGCTTCTATT 58.740 37.500 0.00 0.00 0.00 1.73
344 347 5.713861 AGATTGCAGGTTTCAGCTTCTATTT 59.286 36.000 0.00 0.00 0.00 1.40
345 348 5.376854 TTGCAGGTTTCAGCTTCTATTTC 57.623 39.130 0.00 0.00 0.00 2.17
346 349 3.758554 TGCAGGTTTCAGCTTCTATTTCC 59.241 43.478 0.00 0.00 0.00 3.13
347 350 4.013050 GCAGGTTTCAGCTTCTATTTCCT 58.987 43.478 0.00 0.00 0.00 3.36
348 351 4.095632 GCAGGTTTCAGCTTCTATTTCCTC 59.904 45.833 0.00 0.00 0.00 3.71
349 352 5.248640 CAGGTTTCAGCTTCTATTTCCTCA 58.751 41.667 0.00 0.00 0.00 3.86
350 353 5.123027 CAGGTTTCAGCTTCTATTTCCTCAC 59.877 44.000 0.00 0.00 0.00 3.51
351 354 5.013599 AGGTTTCAGCTTCTATTTCCTCACT 59.986 40.000 0.00 0.00 0.00 3.41
352 355 5.707764 GGTTTCAGCTTCTATTTCCTCACTT 59.292 40.000 0.00 0.00 0.00 3.16
353 356 6.207614 GGTTTCAGCTTCTATTTCCTCACTTT 59.792 38.462 0.00 0.00 0.00 2.66
354 357 7.255625 GGTTTCAGCTTCTATTTCCTCACTTTT 60.256 37.037 0.00 0.00 0.00 2.27
355 358 7.440523 TTCAGCTTCTATTTCCTCACTTTTC 57.559 36.000 0.00 0.00 0.00 2.29
356 359 5.639506 TCAGCTTCTATTTCCTCACTTTTCG 59.360 40.000 0.00 0.00 0.00 3.46
357 360 4.393371 AGCTTCTATTTCCTCACTTTTCGC 59.607 41.667 0.00 0.00 0.00 4.70
358 361 4.154195 GCTTCTATTTCCTCACTTTTCGCA 59.846 41.667 0.00 0.00 0.00 5.10
359 362 5.334879 GCTTCTATTTCCTCACTTTTCGCAA 60.335 40.000 0.00 0.00 0.00 4.85
360 363 6.627395 TTCTATTTCCTCACTTTTCGCAAA 57.373 33.333 0.00 0.00 0.00 3.68
361 364 6.627395 TCTATTTCCTCACTTTTCGCAAAA 57.373 33.333 0.00 0.00 0.00 2.44
362 365 7.033530 TCTATTTCCTCACTTTTCGCAAAAA 57.966 32.000 0.00 0.00 33.42 1.94
510 537 2.357034 GTTCGCCACTCGCCTTCA 60.357 61.111 0.00 0.00 38.27 3.02
517 544 1.269448 GCCACTCGCCTTCAATTTTGA 59.731 47.619 0.00 0.00 34.92 2.69
609 636 2.227149 GTCCGGGTGTTGTTTTATGACC 59.773 50.000 0.00 0.00 0.00 4.02
613 640 3.364565 CGGGTGTTGTTTTATGACCGAAG 60.365 47.826 0.00 0.00 42.42 3.79
644 671 0.319555 GACCAACAGTAGCGAGCACA 60.320 55.000 0.00 0.00 0.00 4.57
645 672 0.321671 ACCAACAGTAGCGAGCACAT 59.678 50.000 0.00 0.00 0.00 3.21
646 673 1.548719 ACCAACAGTAGCGAGCACATA 59.451 47.619 0.00 0.00 0.00 2.29
647 674 2.168521 ACCAACAGTAGCGAGCACATAT 59.831 45.455 0.00 0.00 0.00 1.78
648 675 2.541346 CCAACAGTAGCGAGCACATATG 59.459 50.000 0.00 0.00 0.00 1.78
664 770 5.684550 ACATATGATGTGATGTGATGTGC 57.315 39.130 10.38 0.00 43.01 4.57
698 809 1.855978 TGACTTTTACAGCGTCGTGTG 59.144 47.619 9.71 3.58 31.46 3.82
702 813 1.827315 TTTACAGCGTCGTGTGCAGC 61.827 55.000 9.71 0.00 33.85 5.25
738 857 2.280797 GTGGTGGAAGTGAGCGCA 60.281 61.111 11.47 0.00 0.00 6.09
745 864 2.472488 GTGGAAGTGAGCGCAAATTTTG 59.528 45.455 11.47 4.72 0.00 2.44
769 888 1.798813 GTGTTCTGAAACAGGCGGTAG 59.201 52.381 0.00 0.00 45.78 3.18
770 889 1.414919 TGTTCTGAAACAGGCGGTAGT 59.585 47.619 0.00 0.00 40.45 2.73
777 896 3.810941 TGAAACAGGCGGTAGTAAAAGTG 59.189 43.478 0.00 0.00 0.00 3.16
779 898 1.346722 ACAGGCGGTAGTAAAAGTGCT 59.653 47.619 0.00 0.00 0.00 4.40
781 900 2.928116 CAGGCGGTAGTAAAAGTGCTAC 59.072 50.000 0.00 0.00 40.99 3.58
782 901 1.922545 GGCGGTAGTAAAAGTGCTACG 59.077 52.381 0.00 0.00 42.22 3.51
814 1028 3.486263 GGTGATGAAACCCGCGAG 58.514 61.111 8.23 0.00 33.79 5.03
815 1029 2.750888 GGTGATGAAACCCGCGAGC 61.751 63.158 8.23 0.00 33.79 5.03
859 1109 0.099968 CCATCATCAACAAGGCAGCG 59.900 55.000 0.00 0.00 0.00 5.18
860 1110 1.089112 CATCATCAACAAGGCAGCGA 58.911 50.000 0.00 0.00 0.00 4.93
861 1111 1.063616 CATCATCAACAAGGCAGCGAG 59.936 52.381 0.00 0.00 0.00 5.03
862 1112 0.674581 TCATCAACAAGGCAGCGAGG 60.675 55.000 0.00 0.00 0.00 4.63
958 1208 1.140589 CTGAGCCGACGAAGCATCT 59.859 57.895 0.00 0.00 0.00 2.90
1099 1351 4.026357 GTCCCACCCCCTCCTCCT 62.026 72.222 0.00 0.00 0.00 3.69
1100 1352 3.695825 TCCCACCCCCTCCTCCTC 61.696 72.222 0.00 0.00 0.00 3.71
1102 1354 4.400251 CCACCCCCTCCTCCTCGT 62.400 72.222 0.00 0.00 0.00 4.18
1103 1355 2.760385 CACCCCCTCCTCCTCGTC 60.760 72.222 0.00 0.00 0.00 4.20
1104 1356 4.077180 ACCCCCTCCTCCTCGTCC 62.077 72.222 0.00 0.00 0.00 4.79
1105 1357 4.862823 CCCCCTCCTCCTCGTCCC 62.863 77.778 0.00 0.00 0.00 4.46
1109 1361 3.522731 CTCCTCCTCGTCCCGCAG 61.523 72.222 0.00 0.00 0.00 5.18
1129 1381 4.011517 GTCGTTTCCTCGCCCCCA 62.012 66.667 0.00 0.00 0.00 4.96
1497 1752 0.036952 AGTACGACGACCTCCTCGAA 60.037 55.000 0.00 0.00 46.14 3.71
1592 1847 2.498885 GCTGATCCCCTCAATTTTGCTT 59.501 45.455 0.00 0.00 32.14 3.91
1615 1870 6.723298 TTTTGATTCCTTTTCTGTGGCTTA 57.277 33.333 0.00 0.00 0.00 3.09
1623 1878 4.380531 CTTTTCTGTGGCTTAGAGTGTGA 58.619 43.478 0.00 0.00 0.00 3.58
1629 1884 4.290093 TGTGGCTTAGAGTGTGAGGATAT 58.710 43.478 0.00 0.00 0.00 1.63
1633 1888 4.262249 GGCTTAGAGTGTGAGGATATGGAC 60.262 50.000 0.00 0.00 0.00 4.02
1645 1901 3.073650 AGGATATGGACTTCAGGATTGGC 59.926 47.826 0.00 0.00 0.00 4.52
1650 1906 2.290896 TGGACTTCAGGATTGGCGAAAT 60.291 45.455 0.00 0.00 0.00 2.17
1651 1907 2.755103 GGACTTCAGGATTGGCGAAATT 59.245 45.455 0.00 0.00 0.00 1.82
1860 2127 4.295119 ACTCGGCCAAAGCGACGT 62.295 61.111 2.24 0.00 41.24 4.34
1863 2130 2.426752 CGGCCAAAGCGACGTTTG 60.427 61.111 2.24 12.84 41.24 2.93
1864 2131 2.729491 GGCCAAAGCGACGTTTGC 60.729 61.111 0.00 5.66 41.24 3.68
1896 2163 2.862530 GCGTCAGTTCTACACAGCAAGA 60.863 50.000 0.00 0.00 0.00 3.02
1897 2164 2.726760 CGTCAGTTCTACACAGCAAGAC 59.273 50.000 0.00 0.00 0.00 3.01
1905 2172 2.882927 ACACAGCAAGACGTGAACTA 57.117 45.000 0.00 0.00 36.91 2.24
1906 2173 2.743938 ACACAGCAAGACGTGAACTAG 58.256 47.619 0.00 0.00 36.91 2.57
1909 2176 3.182572 CACAGCAAGACGTGAACTAGAAC 59.817 47.826 0.00 0.00 35.02 3.01
1912 2179 5.161358 CAGCAAGACGTGAACTAGAACATA 58.839 41.667 0.00 0.00 0.00 2.29
1917 2184 4.765856 AGACGTGAACTAGAACATACACCT 59.234 41.667 0.00 0.00 0.00 4.00
1918 2185 5.056894 ACGTGAACTAGAACATACACCTC 57.943 43.478 0.00 0.00 0.00 3.85
1920 2187 5.010314 ACGTGAACTAGAACATACACCTCAA 59.990 40.000 0.00 0.00 0.00 3.02
1922 2189 6.128902 CGTGAACTAGAACATACACCTCAAAC 60.129 42.308 0.00 0.00 0.00 2.93
1923 2190 6.929606 GTGAACTAGAACATACACCTCAAACT 59.070 38.462 0.00 0.00 0.00 2.66
1929 2196 9.823647 CTAGAACATACACCTCAAACTCATTAT 57.176 33.333 0.00 0.00 0.00 1.28
1936 2203 5.178797 CACCTCAAACTCATTATCGAACCT 58.821 41.667 0.00 0.00 0.00 3.50
1937 2204 5.643777 CACCTCAAACTCATTATCGAACCTT 59.356 40.000 0.00 0.00 0.00 3.50
1938 2205 5.643777 ACCTCAAACTCATTATCGAACCTTG 59.356 40.000 0.00 0.00 0.00 3.61
1939 2206 5.643777 CCTCAAACTCATTATCGAACCTTGT 59.356 40.000 0.00 0.00 0.00 3.16
1940 2207 6.183360 CCTCAAACTCATTATCGAACCTTGTC 60.183 42.308 0.00 0.00 0.00 3.18
1941 2208 6.227522 TCAAACTCATTATCGAACCTTGTCA 58.772 36.000 0.00 0.00 0.00 3.58
1942 2209 6.878923 TCAAACTCATTATCGAACCTTGTCAT 59.121 34.615 0.00 0.00 0.00 3.06
1943 2210 7.390440 TCAAACTCATTATCGAACCTTGTCATT 59.610 33.333 0.00 0.00 0.00 2.57
1944 2211 7.687941 AACTCATTATCGAACCTTGTCATTT 57.312 32.000 0.00 0.00 0.00 2.32
1945 2212 7.687941 ACTCATTATCGAACCTTGTCATTTT 57.312 32.000 0.00 0.00 0.00 1.82
1947 2214 9.226606 ACTCATTATCGAACCTTGTCATTTTTA 57.773 29.630 0.00 0.00 0.00 1.52
1957 2224 8.980143 AACCTTGTCATTTTTATACGGATTTG 57.020 30.769 0.00 0.00 0.00 2.32
1963 2230 6.983890 GTCATTTTTATACGGATTTGGGCAAT 59.016 34.615 0.00 0.00 0.00 3.56
1967 2234 6.783708 TTTATACGGATTTGGGCAATCTTT 57.216 33.333 0.00 0.00 41.22 2.52
1970 2237 4.450082 ACGGATTTGGGCAATCTTTTAC 57.550 40.909 0.00 0.00 41.22 2.01
1972 2239 4.466015 ACGGATTTGGGCAATCTTTTACAT 59.534 37.500 0.00 0.00 41.22 2.29
1975 2242 6.183360 CGGATTTGGGCAATCTTTTACATAGT 60.183 38.462 0.00 0.00 41.22 2.12
1978 2245 6.509418 TTGGGCAATCTTTTACATAGTGTC 57.491 37.500 0.00 0.00 0.00 3.67
1979 2246 5.565509 TGGGCAATCTTTTACATAGTGTCA 58.434 37.500 0.00 0.00 0.00 3.58
1980 2247 5.647658 TGGGCAATCTTTTACATAGTGTCAG 59.352 40.000 0.00 0.00 0.00 3.51
1981 2248 5.648092 GGGCAATCTTTTACATAGTGTCAGT 59.352 40.000 0.00 0.00 0.00 3.41
1982 2249 6.403636 GGGCAATCTTTTACATAGTGTCAGTG 60.404 42.308 0.00 0.00 0.00 3.66
1983 2250 6.024049 GCAATCTTTTACATAGTGTCAGTGC 58.976 40.000 0.00 0.00 0.00 4.40
1984 2251 6.348458 GCAATCTTTTACATAGTGTCAGTGCA 60.348 38.462 0.00 0.00 0.00 4.57
1985 2252 6.727824 ATCTTTTACATAGTGTCAGTGCAC 57.272 37.500 9.40 9.40 39.51 4.57
1986 2253 4.994852 TCTTTTACATAGTGTCAGTGCACC 59.005 41.667 14.63 0.00 40.04 5.01
1987 2254 4.617253 TTTACATAGTGTCAGTGCACCT 57.383 40.909 14.63 5.45 40.04 4.00
1988 2255 2.462456 ACATAGTGTCAGTGCACCTG 57.538 50.000 14.63 11.39 42.97 4.00
1989 2256 1.694150 ACATAGTGTCAGTGCACCTGT 59.306 47.619 14.63 12.72 42.19 4.00
1990 2257 2.071540 CATAGTGTCAGTGCACCTGTG 58.928 52.381 14.63 7.78 42.19 3.66
1991 2258 1.119684 TAGTGTCAGTGCACCTGTGT 58.880 50.000 14.63 0.00 42.19 3.72
1992 2259 0.253044 AGTGTCAGTGCACCTGTGTT 59.747 50.000 14.63 0.00 42.19 3.32
1993 2260 1.484653 AGTGTCAGTGCACCTGTGTTA 59.515 47.619 14.63 0.00 42.19 2.41
1994 2261 1.597663 GTGTCAGTGCACCTGTGTTAC 59.402 52.381 14.63 5.83 42.19 2.50
1995 2262 1.208293 TGTCAGTGCACCTGTGTTACA 59.792 47.619 14.63 8.50 42.19 2.41
2004 2271 3.674997 CACCTGTGTTACAAGCCTACAT 58.325 45.455 0.00 0.00 0.00 2.29
2006 2273 3.270877 CCTGTGTTACAAGCCTACATCC 58.729 50.000 0.00 0.00 0.00 3.51
2012 2279 2.094762 ACAAGCCTACATCCGTGAAC 57.905 50.000 0.00 0.00 0.00 3.18
2014 2281 0.252197 AAGCCTACATCCGTGAACCC 59.748 55.000 0.00 0.00 0.00 4.11
2113 2380 3.004752 AGAGGTCTGCAAACTTGTTGT 57.995 42.857 0.00 0.00 0.00 3.32
2131 2398 6.531503 TGTTGTCCACCTTTTACATTTTGA 57.468 33.333 0.00 0.00 0.00 2.69
2149 2416 1.625315 TGAGCGGAATAGGCATAGCAT 59.375 47.619 0.00 0.00 0.00 3.79
2271 2841 4.246409 GCGTTAAGCTAATCAGTGTCAC 57.754 45.455 0.00 0.00 44.04 3.67
2299 2869 3.585289 TGGTGGTAATCTTGGCTGTAAGA 59.415 43.478 0.00 0.00 40.65 2.10
2330 2900 5.951148 TGCAGAATCCATTTGGTATGAAGAA 59.049 36.000 0.00 0.00 36.34 2.52
2395 2965 0.114168 ATGCCTGTTGGTGCCCTTTA 59.886 50.000 0.00 0.00 35.27 1.85
2400 2970 3.119137 GCCTGTTGGTGCCCTTTATTAAG 60.119 47.826 0.00 0.00 35.27 1.85
2472 3064 9.495572 CTTACTTGAATCTCTGAATATTACCCC 57.504 37.037 0.00 0.00 0.00 4.95
2620 3212 2.096119 CGTACGTTGGTGGTTTGATTCC 60.096 50.000 7.22 0.00 0.00 3.01
2630 3222 4.569865 GGTGGTTTGATTCCTAGGGTTGAT 60.570 45.833 9.46 0.00 0.00 2.57
2661 3253 7.179160 AGGATTTGTTTCCTAAGGATTCTTTGG 59.821 37.037 7.86 7.86 44.50 3.28
2704 3296 8.061304 AGGAATTTTAGAGCATTGGAATCCTTA 58.939 33.333 0.00 0.00 0.00 2.69
2956 3621 1.075601 ATCAAAGAGGCCCTGTTCCA 58.924 50.000 0.00 0.00 0.00 3.53
2978 3643 2.354305 ACGGCGACACGTCAGTTC 60.354 61.111 16.62 0.00 45.08 3.01
2979 3644 2.354188 CGGCGACACGTCAGTTCA 60.354 61.111 0.00 0.00 0.00 3.18
2980 3645 2.645510 CGGCGACACGTCAGTTCAC 61.646 63.158 0.00 0.00 0.00 3.18
2981 3646 2.645510 GGCGACACGTCAGTTCACG 61.646 63.158 0.00 0.00 45.65 4.35
3103 3768 6.062749 GTCAGGGATCTACTACTACACATCA 58.937 44.000 0.00 0.00 0.00 3.07
3201 3866 3.806591 CCGCGAAGAGGTTCTACAA 57.193 52.632 8.23 0.00 44.52 2.41
3359 4024 4.093408 ACACAAGCAGCAATGTTATAGTCG 59.907 41.667 0.00 0.00 0.00 4.18
3392 4058 3.554934 TGAATAATGGTGGATGTCAGCC 58.445 45.455 0.00 0.00 42.81 4.85
3519 4188 7.890515 TGTAATTTAGTGTTGAATTGCCATCA 58.109 30.769 0.00 0.00 30.06 3.07
3521 4190 9.023967 GTAATTTAGTGTTGAATTGCCATCATC 57.976 33.333 0.00 0.00 0.00 2.92
3632 4301 6.653320 TCTGTCCCAAATTACTTGTCACATAC 59.347 38.462 0.00 0.00 32.65 2.39
3633 4302 6.539173 TGTCCCAAATTACTTGTCACATACT 58.461 36.000 0.00 0.00 32.65 2.12
3635 4304 7.174253 TGTCCCAAATTACTTGTCACATACTTC 59.826 37.037 0.00 0.00 32.65 3.01
3636 4305 6.657541 TCCCAAATTACTTGTCACATACTTCC 59.342 38.462 0.00 0.00 32.65 3.46
3639 4308 7.148239 CCAAATTACTTGTCACATACTTCCTCC 60.148 40.741 0.00 0.00 32.65 4.30
3640 4309 3.594603 ACTTGTCACATACTTCCTCCG 57.405 47.619 0.00 0.00 0.00 4.63
3641 4310 2.897969 ACTTGTCACATACTTCCTCCGT 59.102 45.455 0.00 0.00 0.00 4.69
3642 4311 3.056749 ACTTGTCACATACTTCCTCCGTC 60.057 47.826 0.00 0.00 0.00 4.79
3643 4312 1.822990 TGTCACATACTTCCTCCGTCC 59.177 52.381 0.00 0.00 0.00 4.79
3644 4313 1.100510 TCACATACTTCCTCCGTCCG 58.899 55.000 0.00 0.00 0.00 4.79
3645 4314 1.100510 CACATACTTCCTCCGTCCGA 58.899 55.000 0.00 0.00 0.00 4.55
3646 4315 1.475280 CACATACTTCCTCCGTCCGAA 59.525 52.381 0.00 0.00 0.00 4.30
3647 4316 2.094390 CACATACTTCCTCCGTCCGAAA 60.094 50.000 0.00 0.00 0.00 3.46
3648 4317 2.564062 ACATACTTCCTCCGTCCGAAAA 59.436 45.455 0.00 0.00 0.00 2.29
3649 4318 3.197116 ACATACTTCCTCCGTCCGAAAAT 59.803 43.478 0.00 0.00 0.00 1.82
3650 4319 4.403432 ACATACTTCCTCCGTCCGAAAATA 59.597 41.667 0.00 0.00 0.00 1.40
3651 4320 3.242549 ACTTCCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
3652 4321 2.830321 ACTTCCTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
3653 4322 4.019174 ACTTCCTCCGTCCGAAAATACTA 58.981 43.478 0.00 0.00 0.00 1.82
3654 4323 4.097589 ACTTCCTCCGTCCGAAAATACTAG 59.902 45.833 0.00 0.00 0.00 2.57
3655 4324 3.624777 TCCTCCGTCCGAAAATACTAGT 58.375 45.455 0.00 0.00 0.00 2.57
3656 4325 3.629398 TCCTCCGTCCGAAAATACTAGTC 59.371 47.826 0.00 0.00 0.00 2.59
3657 4326 3.379372 CCTCCGTCCGAAAATACTAGTCA 59.621 47.826 0.00 0.00 0.00 3.41
3658 4327 4.037684 CCTCCGTCCGAAAATACTAGTCAT 59.962 45.833 0.00 0.00 0.00 3.06
3659 4328 5.179045 TCCGTCCGAAAATACTAGTCATC 57.821 43.478 0.00 0.00 0.00 2.92
3660 4329 4.641541 TCCGTCCGAAAATACTAGTCATCA 59.358 41.667 0.00 0.00 0.00 3.07
3661 4330 5.125900 TCCGTCCGAAAATACTAGTCATCAA 59.874 40.000 0.00 0.00 0.00 2.57
3662 4331 5.808540 CCGTCCGAAAATACTAGTCATCAAA 59.191 40.000 0.00 0.00 0.00 2.69
3663 4332 6.237755 CCGTCCGAAAATACTAGTCATCAAAC 60.238 42.308 0.00 0.00 0.00 2.93
3664 4333 6.530534 CGTCCGAAAATACTAGTCATCAAACT 59.469 38.462 0.00 0.00 0.00 2.66
3665 4334 7.462856 CGTCCGAAAATACTAGTCATCAAACTG 60.463 40.741 0.00 0.00 0.00 3.16
3666 4335 6.816640 TCCGAAAATACTAGTCATCAAACTGG 59.183 38.462 0.00 0.00 34.22 4.00
3667 4336 6.816640 CCGAAAATACTAGTCATCAAACTGGA 59.183 38.462 0.00 0.00 32.53 3.86
3668 4337 7.201530 CCGAAAATACTAGTCATCAAACTGGAC 60.202 40.741 0.00 0.00 32.53 4.02
3669 4338 7.330946 CGAAAATACTAGTCATCAAACTGGACA 59.669 37.037 0.00 0.00 34.04 4.02
3670 4339 8.918202 AAAATACTAGTCATCAAACTGGACAA 57.082 30.769 0.00 0.00 34.04 3.18
3671 4340 8.918202 AAATACTAGTCATCAAACTGGACAAA 57.082 30.769 0.00 0.00 34.04 2.83
3672 4341 8.918202 AATACTAGTCATCAAACTGGACAAAA 57.082 30.769 0.00 0.00 34.04 2.44
3673 4342 8.918202 ATACTAGTCATCAAACTGGACAAAAA 57.082 30.769 0.00 0.00 34.04 1.94
3674 4343 7.264373 ACTAGTCATCAAACTGGACAAAAAG 57.736 36.000 0.00 0.00 34.04 2.27
3675 4344 7.054124 ACTAGTCATCAAACTGGACAAAAAGA 58.946 34.615 0.00 0.00 34.04 2.52
3676 4345 6.382869 AGTCATCAAACTGGACAAAAAGAG 57.617 37.500 0.00 0.00 34.04 2.85
3677 4346 6.122277 AGTCATCAAACTGGACAAAAAGAGA 58.878 36.000 0.00 0.00 34.04 3.10
3678 4347 6.774656 AGTCATCAAACTGGACAAAAAGAGAT 59.225 34.615 0.00 0.00 34.04 2.75
3679 4348 6.860023 GTCATCAAACTGGACAAAAAGAGATG 59.140 38.462 0.00 0.00 0.00 2.90
3680 4349 6.547141 TCATCAAACTGGACAAAAAGAGATGT 59.453 34.615 0.00 0.00 33.02 3.06
3681 4350 7.719193 TCATCAAACTGGACAAAAAGAGATGTA 59.281 33.333 0.00 0.00 33.02 2.29
3682 4351 8.517878 CATCAAACTGGACAAAAAGAGATGTAT 58.482 33.333 0.00 0.00 0.00 2.29
3683 4352 8.099364 TCAAACTGGACAAAAAGAGATGTATC 57.901 34.615 0.00 0.00 0.00 2.24
3684 4353 7.939039 TCAAACTGGACAAAAAGAGATGTATCT 59.061 33.333 0.00 0.00 40.50 1.98
3685 4354 9.219603 CAAACTGGACAAAAAGAGATGTATCTA 57.780 33.333 0.00 0.00 37.25 1.98
3686 4355 9.442047 AAACTGGACAAAAAGAGATGTATCTAG 57.558 33.333 0.00 0.00 37.25 2.43
3687 4356 8.367660 ACTGGACAAAAAGAGATGTATCTAGA 57.632 34.615 0.00 0.00 37.25 2.43
3688 4357 8.816894 ACTGGACAAAAAGAGATGTATCTAGAA 58.183 33.333 0.00 0.00 37.25 2.10
3689 4358 9.092876 CTGGACAAAAAGAGATGTATCTAGAAC 57.907 37.037 0.00 0.00 37.25 3.01
3690 4359 8.816894 TGGACAAAAAGAGATGTATCTAGAACT 58.183 33.333 0.00 0.00 37.25 3.01
3747 4416 8.889849 ATTTTGATACAAGTATTTTCGAACGG 57.110 30.769 0.00 0.00 0.00 4.44
3748 4417 7.655236 TTTGATACAAGTATTTTCGAACGGA 57.345 32.000 0.00 0.00 0.00 4.69
3749 4418 6.880822 TGATACAAGTATTTTCGAACGGAG 57.119 37.500 0.00 0.00 0.00 4.63
3750 4419 5.808540 TGATACAAGTATTTTCGAACGGAGG 59.191 40.000 0.00 0.00 0.00 4.30
3751 4420 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
3752 4421 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
3753 4422 3.521947 AGTATTTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
3756 4425 3.521947 ATTTTCGAACGGAGGGAGTAG 57.478 47.619 0.00 0.00 0.00 2.57
3770 4439 2.158608 GGGAGTAGATGGGTGAAATGGG 60.159 54.545 0.00 0.00 0.00 4.00
3778 4447 6.590656 AGATGGGTGAAATGGGTAGAAATA 57.409 37.500 0.00 0.00 0.00 1.40
3815 4484 8.366671 AGCTAAAAATATGTCGAGATACAACC 57.633 34.615 4.13 0.00 32.02 3.77
3824 4493 2.093921 TCGAGATACAACCATTTCCGCA 60.094 45.455 0.00 0.00 0.00 5.69
3825 4494 2.872245 CGAGATACAACCATTTCCGCAT 59.128 45.455 0.00 0.00 0.00 4.73
3884 4553 5.689961 CGGTTTGTTCAAAACTAAAGGATGG 59.310 40.000 10.83 0.00 0.00 3.51
3894 4563 9.249053 TCAAAACTAAAGGATGGCAATATTACA 57.751 29.630 0.00 0.00 0.00 2.41
3895 4564 9.520204 CAAAACTAAAGGATGGCAATATTACAG 57.480 33.333 0.00 0.00 0.00 2.74
3908 4577 5.634020 GCAATATTACAGTGGGTACTCGATC 59.366 44.000 0.00 0.00 34.07 3.69
3910 4579 2.812836 TACAGTGGGTACTCGATCCA 57.187 50.000 0.00 0.00 34.07 3.41
3919 4593 3.133362 GGGTACTCGATCCACATGGTTAA 59.867 47.826 0.00 0.00 36.34 2.01
3922 4596 2.838202 ACTCGATCCACATGGTTAAGGT 59.162 45.455 0.00 0.00 36.34 3.50
3959 4633 2.360165 GCAATGCCCAAACTCTATCCAG 59.640 50.000 0.00 0.00 0.00 3.86
3965 4639 3.742640 GCCCAAACTCTATCCAGCTAGTG 60.743 52.174 0.00 0.00 0.00 2.74
3977 4651 1.135139 CAGCTAGTGATGTGTACGCCT 59.865 52.381 3.51 0.00 0.00 5.52
3982 4656 1.076332 GTGATGTGTACGCCTGAACC 58.924 55.000 3.51 0.00 0.00 3.62
3987 4661 0.108472 GTGTACGCCTGAACCCTACC 60.108 60.000 0.00 0.00 0.00 3.18
3988 4662 0.251922 TGTACGCCTGAACCCTACCT 60.252 55.000 0.00 0.00 0.00 3.08
3990 4664 2.102578 GTACGCCTGAACCCTACCTAA 58.897 52.381 0.00 0.00 0.00 2.69
4035 4709 4.722535 AAGCGGAGGAGCCCCTGA 62.723 66.667 0.00 0.00 44.53 3.86
4041 4715 1.997874 GAGGAGCCCCTGACCATGT 60.998 63.158 0.00 0.00 44.53 3.21
4043 4717 0.029681 AGGAGCCCCTGACCATGTAT 60.030 55.000 0.00 0.00 42.42 2.29
4046 4720 1.701847 GAGCCCCTGACCATGTATCAT 59.298 52.381 0.00 0.00 0.00 2.45
4050 4724 2.026822 CCCCTGACCATGTATCATAGGC 60.027 54.545 0.00 0.00 0.00 3.93
4059 4733 1.836802 TGTATCATAGGCAGCCACACA 59.163 47.619 15.80 5.01 0.00 3.72
4062 4736 0.692476 TCATAGGCAGCCACACACTT 59.308 50.000 15.80 0.00 0.00 3.16
4063 4737 0.806868 CATAGGCAGCCACACACTTG 59.193 55.000 15.80 0.00 0.00 3.16
4064 4738 0.692476 ATAGGCAGCCACACACTTGA 59.308 50.000 15.80 0.00 0.00 3.02
4065 4739 0.692476 TAGGCAGCCACACACTTGAT 59.308 50.000 15.80 0.00 0.00 2.57
4066 4740 0.607489 AGGCAGCCACACACTTGATC 60.607 55.000 15.80 0.00 0.00 2.92
4067 4741 1.499056 GCAGCCACACACTTGATCG 59.501 57.895 0.00 0.00 0.00 3.69
4068 4742 1.230635 GCAGCCACACACTTGATCGT 61.231 55.000 0.00 0.00 0.00 3.73
4069 4743 1.229428 CAGCCACACACTTGATCGTT 58.771 50.000 0.00 0.00 0.00 3.85
4070 4744 2.412870 CAGCCACACACTTGATCGTTA 58.587 47.619 0.00 0.00 0.00 3.18
4071 4745 3.002791 CAGCCACACACTTGATCGTTAT 58.997 45.455 0.00 0.00 0.00 1.89
4072 4746 3.002791 AGCCACACACTTGATCGTTATG 58.997 45.455 0.00 0.00 0.00 1.90
4073 4747 3.000041 GCCACACACTTGATCGTTATGA 59.000 45.455 0.00 0.00 0.00 2.15
4074 4748 3.623060 GCCACACACTTGATCGTTATGAT 59.377 43.478 0.00 0.00 41.06 2.45
4075 4749 4.808895 GCCACACACTTGATCGTTATGATA 59.191 41.667 0.00 0.00 37.47 2.15
4076 4750 5.466728 GCCACACACTTGATCGTTATGATAT 59.533 40.000 0.00 0.00 37.47 1.63
4077 4751 6.564686 GCCACACACTTGATCGTTATGATATG 60.565 42.308 0.00 0.00 37.47 1.78
4078 4752 6.701400 CCACACACTTGATCGTTATGATATGA 59.299 38.462 0.00 0.00 37.47 2.15
4079 4753 7.224557 CCACACACTTGATCGTTATGATATGAA 59.775 37.037 0.00 0.00 37.47 2.57
4080 4754 8.768019 CACACACTTGATCGTTATGATATGAAT 58.232 33.333 0.00 0.00 37.47 2.57
4081 4755 8.768019 ACACACTTGATCGTTATGATATGAATG 58.232 33.333 0.00 0.00 37.47 2.67
4082 4756 8.981647 CACACTTGATCGTTATGATATGAATGA 58.018 33.333 0.00 0.00 37.47 2.57
4083 4757 9.201127 ACACTTGATCGTTATGATATGAATGAG 57.799 33.333 0.00 0.00 37.47 2.90
4084 4758 9.415544 CACTTGATCGTTATGATATGAATGAGA 57.584 33.333 0.00 0.00 37.47 3.27
4085 4759 9.416794 ACTTGATCGTTATGATATGAATGAGAC 57.583 33.333 0.00 0.00 37.47 3.36
4086 4760 9.415544 CTTGATCGTTATGATATGAATGAGACA 57.584 33.333 0.00 0.00 37.47 3.41
4087 4761 8.748380 TGATCGTTATGATATGAATGAGACAC 57.252 34.615 0.00 0.00 37.47 3.67
4088 4762 7.538678 TGATCGTTATGATATGAATGAGACACG 59.461 37.037 0.00 0.00 37.47 4.49
4089 4763 6.735130 TCGTTATGATATGAATGAGACACGT 58.265 36.000 0.00 0.00 0.00 4.49
4090 4764 7.867752 TCGTTATGATATGAATGAGACACGTA 58.132 34.615 0.00 0.00 0.00 3.57
4091 4765 8.512138 TCGTTATGATATGAATGAGACACGTAT 58.488 33.333 0.00 0.00 0.00 3.06
4092 4766 9.129209 CGTTATGATATGAATGAGACACGTATT 57.871 33.333 0.00 0.00 0.00 1.89
4101 4775 9.981114 ATGAATGAGACACGTATTATCATGTAA 57.019 29.630 7.11 0.00 31.24 2.41
4102 4776 9.810545 TGAATGAGACACGTATTATCATGTAAA 57.189 29.630 7.11 0.00 31.24 2.01
4131 4805 1.812571 AGCAGATAGTTTTTGGTGGCG 59.187 47.619 0.00 0.00 0.00 5.69
4176 4850 6.706295 CCTTTTCTCACTTCTATTCTCCTGT 58.294 40.000 0.00 0.00 0.00 4.00
4197 4871 2.358582 TCACTGTCAAGCAAACATGGTG 59.641 45.455 0.00 0.00 0.00 4.17
4256 4930 2.093500 CCTGTCATGCTAGCCACTAACA 60.093 50.000 13.29 8.57 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.824537 TCACAGAAATCGGTTGAATTTCCA 59.175 37.500 5.26 0.00 35.53 3.53
2 3 7.873739 ATTTCACAGAAATCGGTTGAATTTC 57.126 32.000 0.00 1.31 35.25 2.17
4 5 9.191995 GTAAATTTCACAGAAATCGGTTGAATT 57.808 29.630 5.54 0.00 0.00 2.17
7 8 7.265647 TGTAAATTTCACAGAAATCGGTTGA 57.734 32.000 5.54 0.00 0.00 3.18
8 9 7.410728 GCATGTAAATTTCACAGAAATCGGTTG 60.411 37.037 5.54 3.07 0.00 3.77
9 10 6.586082 GCATGTAAATTTCACAGAAATCGGTT 59.414 34.615 5.54 0.65 0.00 4.44
10 11 6.071952 AGCATGTAAATTTCACAGAAATCGGT 60.072 34.615 5.54 0.00 0.00 4.69
11 12 6.324819 AGCATGTAAATTTCACAGAAATCGG 58.675 36.000 5.54 0.00 0.00 4.18
12 13 7.538334 TCAAGCATGTAAATTTCACAGAAATCG 59.462 33.333 5.54 0.00 0.00 3.34
13 14 8.746922 TCAAGCATGTAAATTTCACAGAAATC 57.253 30.769 5.54 0.00 0.00 2.17
14 15 9.545105 TTTCAAGCATGTAAATTTCACAGAAAT 57.455 25.926 0.00 0.00 0.00 2.17
15 16 8.816144 GTTTCAAGCATGTAAATTTCACAGAAA 58.184 29.630 0.00 2.20 0.00 2.52
16 17 7.978414 TGTTTCAAGCATGTAAATTTCACAGAA 59.022 29.630 0.00 0.00 0.00 3.02
17 18 7.434897 GTGTTTCAAGCATGTAAATTTCACAGA 59.565 33.333 0.00 0.00 0.00 3.41
18 19 7.222417 TGTGTTTCAAGCATGTAAATTTCACAG 59.778 33.333 0.00 0.00 0.00 3.66
19 20 7.038048 TGTGTTTCAAGCATGTAAATTTCACA 58.962 30.769 0.00 0.00 0.00 3.58
20 21 7.462109 TGTGTTTCAAGCATGTAAATTTCAC 57.538 32.000 0.00 0.00 0.00 3.18
21 22 8.659925 AATGTGTTTCAAGCATGTAAATTTCA 57.340 26.923 0.00 0.00 0.00 2.69
22 23 9.934190 AAAATGTGTTTCAAGCATGTAAATTTC 57.066 25.926 0.00 0.00 0.00 2.17
23 24 9.934190 GAAAATGTGTTTCAAGCATGTAAATTT 57.066 25.926 0.00 0.00 0.00 1.82
24 25 9.328845 AGAAAATGTGTTTCAAGCATGTAAATT 57.671 25.926 0.00 0.00 0.00 1.82
25 26 8.891671 AGAAAATGTGTTTCAAGCATGTAAAT 57.108 26.923 0.00 0.00 0.00 1.40
26 27 7.167302 CGAGAAAATGTGTTTCAAGCATGTAAA 59.833 33.333 0.00 0.00 0.00 2.01
27 28 6.636447 CGAGAAAATGTGTTTCAAGCATGTAA 59.364 34.615 0.00 0.00 0.00 2.41
28 29 6.142139 CGAGAAAATGTGTTTCAAGCATGTA 58.858 36.000 0.00 0.00 0.00 2.29
29 30 4.977963 CGAGAAAATGTGTTTCAAGCATGT 59.022 37.500 0.00 0.00 0.00 3.21
30 31 4.383649 CCGAGAAAATGTGTTTCAAGCATG 59.616 41.667 2.00 0.00 0.00 4.06
31 32 4.037923 ACCGAGAAAATGTGTTTCAAGCAT 59.962 37.500 2.00 0.00 0.00 3.79
32 33 3.380004 ACCGAGAAAATGTGTTTCAAGCA 59.620 39.130 2.00 0.00 0.00 3.91
33 34 3.730715 CACCGAGAAAATGTGTTTCAAGC 59.269 43.478 2.00 0.00 0.00 4.01
34 35 4.734854 CACACCGAGAAAATGTGTTTCAAG 59.265 41.667 2.00 0.00 41.04 3.02
35 36 4.667262 CACACCGAGAAAATGTGTTTCAA 58.333 39.130 2.00 0.00 41.04 2.69
36 37 3.488384 GCACACCGAGAAAATGTGTTTCA 60.488 43.478 5.58 0.00 44.52 2.69
37 38 3.042887 GCACACCGAGAAAATGTGTTTC 58.957 45.455 5.58 0.00 44.52 2.78
38 39 2.223711 GGCACACCGAGAAAATGTGTTT 60.224 45.455 5.58 0.00 44.52 2.83
39 40 1.336755 GGCACACCGAGAAAATGTGTT 59.663 47.619 5.58 0.00 44.52 3.32
40 41 0.951558 GGCACACCGAGAAAATGTGT 59.048 50.000 5.58 0.00 44.52 3.72
41 42 1.238439 AGGCACACCGAGAAAATGTG 58.762 50.000 0.00 0.00 45.29 3.21
42 43 2.038557 ACTAGGCACACCGAGAAAATGT 59.961 45.455 0.00 0.00 40.97 2.71
43 44 2.699954 ACTAGGCACACCGAGAAAATG 58.300 47.619 0.00 0.00 40.97 2.32
44 45 4.251268 GTTACTAGGCACACCGAGAAAAT 58.749 43.478 0.00 0.00 40.97 1.82
45 46 3.069872 TGTTACTAGGCACACCGAGAAAA 59.930 43.478 0.00 0.00 40.97 2.29
46 47 2.629137 TGTTACTAGGCACACCGAGAAA 59.371 45.455 0.00 0.00 40.97 2.52
47 48 2.241160 TGTTACTAGGCACACCGAGAA 58.759 47.619 0.00 0.00 40.97 2.87
48 49 1.913778 TGTTACTAGGCACACCGAGA 58.086 50.000 0.00 0.00 40.97 4.04
49 50 2.736144 TTGTTACTAGGCACACCGAG 57.264 50.000 0.00 0.00 43.88 4.63
50 51 2.629137 TCTTTGTTACTAGGCACACCGA 59.371 45.455 0.00 0.00 42.76 4.69
51 52 2.993899 CTCTTTGTTACTAGGCACACCG 59.006 50.000 0.00 0.00 42.76 4.94
52 53 2.742589 GCTCTTTGTTACTAGGCACACC 59.257 50.000 0.00 0.00 0.00 4.16
53 54 3.665190 AGCTCTTTGTTACTAGGCACAC 58.335 45.455 0.00 0.00 0.00 3.82
54 55 4.351874 AAGCTCTTTGTTACTAGGCACA 57.648 40.909 0.00 0.00 0.00 4.57
55 56 4.870991 CCTAAGCTCTTTGTTACTAGGCAC 59.129 45.833 0.00 0.00 0.00 5.01
56 57 4.775780 TCCTAAGCTCTTTGTTACTAGGCA 59.224 41.667 0.00 0.00 0.00 4.75
57 58 5.340439 TCCTAAGCTCTTTGTTACTAGGC 57.660 43.478 0.00 0.00 0.00 3.93
58 59 5.755861 GCATCCTAAGCTCTTTGTTACTAGG 59.244 44.000 0.00 0.00 0.00 3.02
59 60 5.460419 CGCATCCTAAGCTCTTTGTTACTAG 59.540 44.000 0.00 0.00 0.00 2.57
60 61 5.105473 ACGCATCCTAAGCTCTTTGTTACTA 60.105 40.000 0.00 0.00 0.00 1.82
78 79 1.766069 GGTCAACAAAACCACGCATC 58.234 50.000 0.00 0.00 36.75 3.91
82 83 0.248296 CACCGGTCAACAAAACCACG 60.248 55.000 2.59 0.00 36.53 4.94
113 114 2.050477 CACCGGTTGCATCTTTGAAC 57.950 50.000 2.97 0.00 0.00 3.18
171 174 9.997482 GAAATTCTGTGTGTTTGTACTTTTCTA 57.003 29.630 0.00 0.00 0.00 2.10
177 180 6.119536 TGAGGAAATTCTGTGTGTTTGTACT 58.880 36.000 0.00 0.00 0.00 2.73
179 182 6.353323 TCTGAGGAAATTCTGTGTGTTTGTA 58.647 36.000 0.00 0.00 0.00 2.41
181 184 5.756195 TCTGAGGAAATTCTGTGTGTTTG 57.244 39.130 0.00 0.00 0.00 2.93
183 186 6.966534 ATTTCTGAGGAAATTCTGTGTGTT 57.033 33.333 0.00 0.00 46.36 3.32
185 188 6.147821 ACGTATTTCTGAGGAAATTCTGTGTG 59.852 38.462 8.87 0.00 46.36 3.82
187 190 6.727824 ACGTATTTCTGAGGAAATTCTGTG 57.272 37.500 8.87 0.41 46.36 3.66
188 191 6.535508 GCTACGTATTTCTGAGGAAATTCTGT 59.464 38.462 8.87 8.05 46.36 3.41
189 192 6.291849 CGCTACGTATTTCTGAGGAAATTCTG 60.292 42.308 8.87 3.65 46.36 3.02
198 201 2.526077 TGTGCGCTACGTATTTCTGAG 58.474 47.619 9.73 0.00 0.00 3.35
213 216 2.168621 CGCGAAGACACTTGTGCG 59.831 61.111 0.00 11.22 39.57 5.34
224 227 2.231745 CTGTGTCATGCCACGCGAAG 62.232 60.000 15.93 4.03 38.20 3.79
237 240 1.084370 GGCTCCACGTATGCTGTGTC 61.084 60.000 0.00 0.00 35.56 3.67
272 275 1.318158 GGATGACAGGGCAAGCCTTG 61.318 60.000 20.10 20.10 46.98 3.61
276 279 0.743097 GATTGGATGACAGGGCAAGC 59.257 55.000 0.00 0.00 0.00 4.01
286 289 0.331278 GGTGGTGGTGGATTGGATGA 59.669 55.000 0.00 0.00 0.00 2.92
315 318 3.503748 AGCTGAAACCTGCAATCTTGTAC 59.496 43.478 0.00 0.00 0.00 2.90
316 319 3.754965 AGCTGAAACCTGCAATCTTGTA 58.245 40.909 0.00 0.00 0.00 2.41
317 320 2.590821 AGCTGAAACCTGCAATCTTGT 58.409 42.857 0.00 0.00 0.00 3.16
320 323 3.151912 AGAAGCTGAAACCTGCAATCT 57.848 42.857 0.00 0.00 0.00 2.40
334 337 4.393371 GCGAAAAGTGAGGAAATAGAAGCT 59.607 41.667 0.00 0.00 0.00 3.74
335 338 4.154195 TGCGAAAAGTGAGGAAATAGAAGC 59.846 41.667 0.00 0.00 0.00 3.86
336 339 5.862924 TGCGAAAAGTGAGGAAATAGAAG 57.137 39.130 0.00 0.00 0.00 2.85
337 340 6.627395 TTTGCGAAAAGTGAGGAAATAGAA 57.373 33.333 0.00 0.00 0.00 2.10
338 341 6.627395 TTTTGCGAAAAGTGAGGAAATAGA 57.373 33.333 0.00 0.00 0.00 1.98
362 365 7.001073 AGTCAGTGAGGAAATAGAAGCTTTTT 58.999 34.615 0.00 0.00 0.00 1.94
363 366 6.538263 AGTCAGTGAGGAAATAGAAGCTTTT 58.462 36.000 0.00 0.00 0.00 2.27
364 367 6.120507 AGTCAGTGAGGAAATAGAAGCTTT 57.879 37.500 0.00 0.00 0.00 3.51
365 368 5.753721 AGTCAGTGAGGAAATAGAAGCTT 57.246 39.130 0.00 0.00 0.00 3.74
508 535 9.594478 CATGGATGATGAAAGAATCAAAATTGA 57.406 29.630 0.00 0.00 42.54 2.57
510 537 8.764558 TCCATGGATGATGAAAGAATCAAAATT 58.235 29.630 11.44 0.00 42.54 1.82
517 544 4.140994 AGGCTCCATGGATGATGAAAGAAT 60.141 41.667 16.63 0.00 33.31 2.40
609 636 3.980646 TGGTCAAAAACATCACCTTCG 57.019 42.857 0.00 0.00 0.00 3.79
613 640 4.385358 ACTGTTGGTCAAAAACATCACC 57.615 40.909 0.00 0.00 36.95 4.02
620 647 2.289547 GCTCGCTACTGTTGGTCAAAAA 59.710 45.455 0.00 0.00 0.00 1.94
628 655 3.447742 TCATATGTGCTCGCTACTGTTG 58.552 45.455 1.90 0.00 0.00 3.33
644 671 4.215613 GCAGCACATCACATCACATCATAT 59.784 41.667 0.00 0.00 0.00 1.78
645 672 3.562557 GCAGCACATCACATCACATCATA 59.437 43.478 0.00 0.00 0.00 2.15
646 673 2.357952 GCAGCACATCACATCACATCAT 59.642 45.455 0.00 0.00 0.00 2.45
647 674 1.741145 GCAGCACATCACATCACATCA 59.259 47.619 0.00 0.00 0.00 3.07
648 675 1.741145 TGCAGCACATCACATCACATC 59.259 47.619 0.00 0.00 0.00 3.06
664 770 0.670546 AAGTCATCGTCGGGTTGCAG 60.671 55.000 0.00 0.00 0.00 4.41
691 802 0.234625 TGAATTTCGCTGCACACGAC 59.765 50.000 6.58 0.00 39.67 4.34
698 809 2.438868 AAAAGGGTGAATTTCGCTGC 57.561 45.000 9.65 0.00 0.00 5.25
702 813 4.155280 ACCACGATAAAAGGGTGAATTTCG 59.845 41.667 0.00 0.00 33.58 3.46
738 857 4.926238 TGTTTCAGAACACACGCAAAATTT 59.074 33.333 0.00 0.00 40.71 1.82
745 864 0.317020 GCCTGTTTCAGAACACACGC 60.317 55.000 0.00 0.00 40.71 5.34
769 888 9.401445 GTTAAATCGTAATCGTAGCACTTTTAC 57.599 33.333 0.00 0.00 38.33 2.01
770 889 8.313227 CGTTAAATCGTAATCGTAGCACTTTTA 58.687 33.333 0.00 0.00 38.33 1.52
777 896 4.044426 ACCCGTTAAATCGTAATCGTAGC 58.956 43.478 0.00 0.00 38.33 3.58
779 898 5.242069 TCACCCGTTAAATCGTAATCGTA 57.758 39.130 0.00 0.00 38.33 3.43
781 900 4.741185 TCATCACCCGTTAAATCGTAATCG 59.259 41.667 0.00 0.00 38.55 3.34
782 901 6.592798 TTCATCACCCGTTAAATCGTAATC 57.407 37.500 0.00 0.00 0.00 1.75
828 1042 1.911357 TGATGATGGAGTCCTGCTTGT 59.089 47.619 11.33 0.00 0.00 3.16
859 1109 2.760385 CCACGTCCTCCCTCCCTC 60.760 72.222 0.00 0.00 0.00 4.30
860 1110 3.273654 TCCACGTCCTCCCTCCCT 61.274 66.667 0.00 0.00 0.00 4.20
861 1111 2.760385 CTCCACGTCCTCCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
862 1112 0.903454 TTTCTCCACGTCCTCCCTCC 60.903 60.000 0.00 0.00 0.00 4.30
1086 1338 2.760385 GACGAGGAGGAGGGGGTG 60.760 72.222 0.00 0.00 0.00 4.61
1105 1357 3.479269 GAGGAAACGACGGCTGCG 61.479 66.667 0.00 7.65 0.00 5.18
1106 1358 3.479269 CGAGGAAACGACGGCTGC 61.479 66.667 0.00 0.00 35.09 5.25
1107 1359 3.479269 GCGAGGAAACGACGGCTG 61.479 66.667 0.00 0.00 36.05 4.85
1592 1847 5.612725 AAGCCACAGAAAAGGAATCAAAA 57.387 34.783 0.00 0.00 0.00 2.44
1615 1870 4.614475 TGAAGTCCATATCCTCACACTCT 58.386 43.478 0.00 0.00 0.00 3.24
1623 1878 3.073650 GCCAATCCTGAAGTCCATATCCT 59.926 47.826 0.00 0.00 0.00 3.24
1629 1884 0.690192 TTCGCCAATCCTGAAGTCCA 59.310 50.000 0.00 0.00 0.00 4.02
1772 2028 1.178276 ATCTCTCAGGCGACGACTTT 58.822 50.000 0.00 0.00 0.00 2.66
1774 2030 0.736053 GAATCTCTCAGGCGACGACT 59.264 55.000 0.00 0.00 0.00 4.18
1860 2127 0.306533 GACGCCAGAAAGAACGCAAA 59.693 50.000 0.00 0.00 0.00 3.68
1863 2130 1.222115 ACTGACGCCAGAAAGAACGC 61.222 55.000 5.48 0.00 43.02 4.84
1864 2131 1.192534 GAACTGACGCCAGAAAGAACG 59.807 52.381 5.48 0.00 43.02 3.95
1875 2142 1.457303 CTTGCTGTGTAGAACTGACGC 59.543 52.381 0.00 0.00 0.00 5.19
1896 2163 4.521639 TGAGGTGTATGTTCTAGTTCACGT 59.478 41.667 0.00 0.00 0.00 4.49
1897 2164 5.055642 TGAGGTGTATGTTCTAGTTCACG 57.944 43.478 0.00 0.00 0.00 4.35
1905 2172 7.492669 CGATAATGAGTTTGAGGTGTATGTTCT 59.507 37.037 0.00 0.00 0.00 3.01
1906 2173 7.491372 TCGATAATGAGTTTGAGGTGTATGTTC 59.509 37.037 0.00 0.00 0.00 3.18
1909 2176 7.254455 GGTTCGATAATGAGTTTGAGGTGTATG 60.254 40.741 0.00 0.00 0.00 2.39
1912 2179 4.935808 GGTTCGATAATGAGTTTGAGGTGT 59.064 41.667 0.00 0.00 0.00 4.16
1917 2184 6.227522 TGACAAGGTTCGATAATGAGTTTGA 58.772 36.000 0.00 0.00 0.00 2.69
1918 2185 6.480524 TGACAAGGTTCGATAATGAGTTTG 57.519 37.500 0.00 0.00 0.00 2.93
1920 2187 7.687941 AAATGACAAGGTTCGATAATGAGTT 57.312 32.000 0.00 0.00 0.00 3.01
1929 2196 6.164876 TCCGTATAAAAATGACAAGGTTCGA 58.835 36.000 0.00 0.00 0.00 3.71
1936 2203 6.071334 TGCCCAAATCCGTATAAAAATGACAA 60.071 34.615 0.00 0.00 0.00 3.18
1937 2204 5.419155 TGCCCAAATCCGTATAAAAATGACA 59.581 36.000 0.00 0.00 0.00 3.58
1938 2205 5.897050 TGCCCAAATCCGTATAAAAATGAC 58.103 37.500 0.00 0.00 0.00 3.06
1939 2206 6.531503 TTGCCCAAATCCGTATAAAAATGA 57.468 33.333 0.00 0.00 0.00 2.57
1940 2207 7.209475 AGATTGCCCAAATCCGTATAAAAATG 58.791 34.615 0.00 0.00 45.10 2.32
1941 2208 7.360113 AGATTGCCCAAATCCGTATAAAAAT 57.640 32.000 0.00 0.00 45.10 1.82
1942 2209 6.783708 AGATTGCCCAAATCCGTATAAAAA 57.216 33.333 0.00 0.00 45.10 1.94
1943 2210 6.783708 AAGATTGCCCAAATCCGTATAAAA 57.216 33.333 0.00 0.00 45.10 1.52
1944 2211 6.783708 AAAGATTGCCCAAATCCGTATAAA 57.216 33.333 0.00 0.00 45.10 1.40
1945 2212 6.783708 AAAAGATTGCCCAAATCCGTATAA 57.216 33.333 0.00 0.00 45.10 0.98
1947 2214 5.654650 TGTAAAAGATTGCCCAAATCCGTAT 59.345 36.000 0.00 0.00 45.10 3.06
1948 2215 5.010933 TGTAAAAGATTGCCCAAATCCGTA 58.989 37.500 0.00 0.00 45.10 4.02
1957 2224 5.648092 ACTGACACTATGTAAAAGATTGCCC 59.352 40.000 0.00 0.00 0.00 5.36
1963 2230 4.994852 GGTGCACTGACACTATGTAAAAGA 59.005 41.667 17.98 0.00 40.52 2.52
1979 2246 1.308998 GCTTGTAACACAGGTGCACT 58.691 50.000 17.98 0.00 0.00 4.40
1980 2247 0.310854 GGCTTGTAACACAGGTGCAC 59.689 55.000 8.80 8.80 0.00 4.57
1981 2248 0.182537 AGGCTTGTAACACAGGTGCA 59.817 50.000 0.00 0.00 0.00 4.57
1982 2249 1.804748 GTAGGCTTGTAACACAGGTGC 59.195 52.381 0.00 0.00 0.00 5.01
1983 2250 3.120321 TGTAGGCTTGTAACACAGGTG 57.880 47.619 0.00 0.00 0.00 4.00
1984 2251 3.307480 GGATGTAGGCTTGTAACACAGGT 60.307 47.826 0.00 0.00 0.00 4.00
1985 2252 3.270877 GGATGTAGGCTTGTAACACAGG 58.729 50.000 0.00 0.00 0.00 4.00
1986 2253 2.930040 CGGATGTAGGCTTGTAACACAG 59.070 50.000 0.00 0.00 0.00 3.66
1987 2254 2.300723 ACGGATGTAGGCTTGTAACACA 59.699 45.455 0.00 0.00 0.00 3.72
1988 2255 2.671396 CACGGATGTAGGCTTGTAACAC 59.329 50.000 0.00 0.00 0.00 3.32
1989 2256 2.563620 TCACGGATGTAGGCTTGTAACA 59.436 45.455 0.00 0.00 0.00 2.41
1990 2257 3.241067 TCACGGATGTAGGCTTGTAAC 57.759 47.619 0.00 0.00 0.00 2.50
1991 2258 3.592059 GTTCACGGATGTAGGCTTGTAA 58.408 45.455 0.00 0.00 0.00 2.41
1992 2259 2.093869 GGTTCACGGATGTAGGCTTGTA 60.094 50.000 0.00 0.00 0.00 2.41
1993 2260 1.338769 GGTTCACGGATGTAGGCTTGT 60.339 52.381 0.00 0.00 0.00 3.16
1994 2261 1.369625 GGTTCACGGATGTAGGCTTG 58.630 55.000 0.00 0.00 0.00 4.01
1995 2262 0.252197 GGGTTCACGGATGTAGGCTT 59.748 55.000 0.00 0.00 0.00 4.35
2042 2309 2.557924 TCAAATGCCCAAAGTGCTACTG 59.442 45.455 0.00 0.00 0.00 2.74
2113 2380 3.254657 CCGCTCAAAATGTAAAAGGTGGA 59.745 43.478 0.00 0.00 0.00 4.02
2131 2398 1.404717 CGATGCTATGCCTATTCCGCT 60.405 52.381 0.00 0.00 0.00 5.52
2269 2839 3.254060 CAAGATTACCACCACTCTCGTG 58.746 50.000 0.00 0.00 40.89 4.35
2271 2841 2.893637 CCAAGATTACCACCACTCTCG 58.106 52.381 0.00 0.00 0.00 4.04
2299 2869 2.753452 CAAATGGATTCTGCAGCTGAGT 59.247 45.455 20.43 0.00 0.00 3.41
2342 2912 7.055667 TCAGTCAAGGTATCAGATTCCATAC 57.944 40.000 8.68 3.77 0.00 2.39
2395 2965 9.601217 ACGAGCTAGTTTGAAATATCACTTAAT 57.399 29.630 0.07 0.00 34.61 1.40
2400 2970 6.074249 GGCTACGAGCTAGTTTGAAATATCAC 60.074 42.308 4.33 0.00 41.99 3.06
2466 3058 3.644966 ATCAAATGAGCTTCGGGGTAA 57.355 42.857 0.00 0.00 0.00 2.85
2469 3061 1.202336 GCAATCAAATGAGCTTCGGGG 60.202 52.381 0.00 0.00 0.00 5.73
2472 3064 2.701807 CTCGCAATCAAATGAGCTTCG 58.298 47.619 0.00 0.00 0.00 3.79
2600 3192 3.143728 AGGAATCAAACCACCAACGTAC 58.856 45.455 0.00 0.00 0.00 3.67
2704 3296 4.981812 ACGACCAACTTAGGAAAAATCCT 58.018 39.130 2.51 2.51 43.62 3.24
2717 3309 4.261801 CCCTATGAATCAAACGACCAACT 58.738 43.478 0.00 0.00 0.00 3.16
2762 3421 7.509546 TCCTATGGAAGTACAAAGGAATCATC 58.490 38.462 0.00 0.00 30.34 2.92
2908 3572 4.015872 AGTCCAAAAACGCAGGAATAGA 57.984 40.909 0.00 0.00 32.30 1.98
2956 3621 1.758319 CTGACGTGTCGCCGTTTGTT 61.758 55.000 0.00 0.00 41.98 2.83
2972 3637 3.536956 AAAGGAACTGACGTGAACTGA 57.463 42.857 0.00 0.00 40.86 3.41
2973 3638 3.871594 AGAAAAGGAACTGACGTGAACTG 59.128 43.478 0.00 0.00 40.86 3.16
2974 3639 4.138487 AGAAAAGGAACTGACGTGAACT 57.862 40.909 0.00 0.00 40.86 3.01
2975 3640 4.877323 AAGAAAAGGAACTGACGTGAAC 57.123 40.909 0.00 0.00 40.86 3.18
2976 3641 6.988622 TTTAAGAAAAGGAACTGACGTGAA 57.011 33.333 0.00 0.00 40.86 3.18
2977 3642 6.598753 CTTTAAGAAAAGGAACTGACGTGA 57.401 37.500 0.00 0.00 40.86 4.35
3103 3768 3.780173 GCCGCCTTCTCCTGCTCT 61.780 66.667 0.00 0.00 0.00 4.09
3359 4024 2.289002 CCATTATTCAGGCAGCGTTCTC 59.711 50.000 0.00 0.00 0.00 2.87
3392 4058 6.369065 AGCTAGGAAAACTGTAGTGAAATTCG 59.631 38.462 0.00 0.00 0.00 3.34
3432 4098 8.614469 ACTTTCTTCTCTCTTACAATCCTTTG 57.386 34.615 0.00 0.00 38.86 2.77
3470 4139 9.747898 ACAATGGTAATTCAACACTAATAAGGA 57.252 29.630 0.00 0.00 0.00 3.36
3519 4188 6.297830 CCCAGGCCATAATTTATCCTAAGGAT 60.298 42.308 5.01 0.00 45.40 3.24
3521 4190 5.222337 ACCCAGGCCATAATTTATCCTAAGG 60.222 44.000 5.01 9.05 0.00 2.69
3567 4236 8.341173 CCTGCTAACTCTGATAACATCATTTTC 58.659 37.037 0.00 0.00 38.85 2.29
3574 4243 3.713764 AGGCCTGCTAACTCTGATAACAT 59.286 43.478 3.11 0.00 0.00 2.71
3632 4301 3.521947 AGTATTTTCGGACGGAGGAAG 57.478 47.619 0.00 0.00 0.00 3.46
3633 4302 4.019174 ACTAGTATTTTCGGACGGAGGAA 58.981 43.478 0.00 0.00 0.00 3.36
3635 4304 3.379372 TGACTAGTATTTTCGGACGGAGG 59.621 47.826 0.00 0.00 0.00 4.30
3636 4305 4.627611 TGACTAGTATTTTCGGACGGAG 57.372 45.455 0.00 0.00 0.00 4.63
3639 4308 6.530534 AGTTTGATGACTAGTATTTTCGGACG 59.469 38.462 0.00 0.00 0.00 4.79
3640 4309 7.201530 CCAGTTTGATGACTAGTATTTTCGGAC 60.202 40.741 0.00 0.00 0.00 4.79
3641 4310 6.816640 CCAGTTTGATGACTAGTATTTTCGGA 59.183 38.462 0.00 0.00 0.00 4.55
3642 4311 6.816640 TCCAGTTTGATGACTAGTATTTTCGG 59.183 38.462 0.00 0.00 0.00 4.30
3643 4312 7.330946 TGTCCAGTTTGATGACTAGTATTTTCG 59.669 37.037 0.00 0.00 0.00 3.46
3644 4313 8.547967 TGTCCAGTTTGATGACTAGTATTTTC 57.452 34.615 0.00 0.00 0.00 2.29
3645 4314 8.918202 TTGTCCAGTTTGATGACTAGTATTTT 57.082 30.769 0.00 0.00 0.00 1.82
3646 4315 8.918202 TTTGTCCAGTTTGATGACTAGTATTT 57.082 30.769 0.00 0.00 0.00 1.40
3647 4316 8.918202 TTTTGTCCAGTTTGATGACTAGTATT 57.082 30.769 0.00 0.00 0.00 1.89
3648 4317 8.918202 TTTTTGTCCAGTTTGATGACTAGTAT 57.082 30.769 0.00 0.00 0.00 2.12
3649 4318 8.208224 TCTTTTTGTCCAGTTTGATGACTAGTA 58.792 33.333 0.00 0.00 0.00 1.82
3650 4319 7.054124 TCTTTTTGTCCAGTTTGATGACTAGT 58.946 34.615 0.00 0.00 0.00 2.57
3651 4320 7.442364 TCTCTTTTTGTCCAGTTTGATGACTAG 59.558 37.037 0.00 0.00 0.00 2.57
3652 4321 7.279615 TCTCTTTTTGTCCAGTTTGATGACTA 58.720 34.615 0.00 0.00 0.00 2.59
3653 4322 6.122277 TCTCTTTTTGTCCAGTTTGATGACT 58.878 36.000 0.00 0.00 0.00 3.41
3654 4323 6.377327 TCTCTTTTTGTCCAGTTTGATGAC 57.623 37.500 0.00 0.00 0.00 3.06
3655 4324 6.547141 ACATCTCTTTTTGTCCAGTTTGATGA 59.453 34.615 0.00 0.00 33.85 2.92
3656 4325 6.742109 ACATCTCTTTTTGTCCAGTTTGATG 58.258 36.000 0.00 0.00 35.23 3.07
3657 4326 6.966534 ACATCTCTTTTTGTCCAGTTTGAT 57.033 33.333 0.00 0.00 0.00 2.57
3658 4327 7.939039 AGATACATCTCTTTTTGTCCAGTTTGA 59.061 33.333 0.00 0.00 29.30 2.69
3659 4328 8.103948 AGATACATCTCTTTTTGTCCAGTTTG 57.896 34.615 0.00 0.00 29.30 2.93
3660 4329 9.442047 CTAGATACATCTCTTTTTGTCCAGTTT 57.558 33.333 0.00 0.00 38.32 2.66
3661 4330 8.816894 TCTAGATACATCTCTTTTTGTCCAGTT 58.183 33.333 0.00 0.00 38.32 3.16
3662 4331 8.367660 TCTAGATACATCTCTTTTTGTCCAGT 57.632 34.615 0.00 0.00 38.32 4.00
3663 4332 9.092876 GTTCTAGATACATCTCTTTTTGTCCAG 57.907 37.037 0.00 0.00 38.32 3.86
3664 4333 8.816894 AGTTCTAGATACATCTCTTTTTGTCCA 58.183 33.333 0.00 0.00 38.32 4.02
3721 4390 9.976255 CCGTTCGAAAATACTTGTATCAAAATA 57.024 29.630 0.00 0.00 0.00 1.40
3722 4391 8.723311 TCCGTTCGAAAATACTTGTATCAAAAT 58.277 29.630 0.00 0.00 0.00 1.82
3723 4392 8.085720 TCCGTTCGAAAATACTTGTATCAAAA 57.914 30.769 0.00 0.00 0.00 2.44
3724 4393 7.148540 CCTCCGTTCGAAAATACTTGTATCAAA 60.149 37.037 0.00 0.00 0.00 2.69
3725 4394 6.311935 CCTCCGTTCGAAAATACTTGTATCAA 59.688 38.462 0.00 0.00 0.00 2.57
3726 4395 5.808540 CCTCCGTTCGAAAATACTTGTATCA 59.191 40.000 0.00 0.00 0.00 2.15
3727 4396 5.233689 CCCTCCGTTCGAAAATACTTGTATC 59.766 44.000 0.00 0.00 0.00 2.24
3728 4397 5.105228 TCCCTCCGTTCGAAAATACTTGTAT 60.105 40.000 0.00 0.00 0.00 2.29
3729 4398 4.220382 TCCCTCCGTTCGAAAATACTTGTA 59.780 41.667 0.00 0.00 0.00 2.41
3730 4399 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
3731 4400 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
3732 4401 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
3733 4402 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
3734 4403 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
3735 4404 4.272489 TCTACTCCCTCCGTTCGAAAATA 58.728 43.478 0.00 0.00 0.00 1.40
3736 4405 3.094572 TCTACTCCCTCCGTTCGAAAAT 58.905 45.455 0.00 0.00 0.00 1.82
3737 4406 2.517959 TCTACTCCCTCCGTTCGAAAA 58.482 47.619 0.00 0.00 0.00 2.29
3738 4407 2.205022 TCTACTCCCTCCGTTCGAAA 57.795 50.000 0.00 0.00 0.00 3.46
3739 4408 2.022195 CATCTACTCCCTCCGTTCGAA 58.978 52.381 0.00 0.00 0.00 3.71
3740 4409 1.676746 CATCTACTCCCTCCGTTCGA 58.323 55.000 0.00 0.00 0.00 3.71
3741 4410 0.669077 CCATCTACTCCCTCCGTTCG 59.331 60.000 0.00 0.00 0.00 3.95
3742 4411 1.041437 CCCATCTACTCCCTCCGTTC 58.959 60.000 0.00 0.00 0.00 3.95
3743 4412 0.338814 ACCCATCTACTCCCTCCGTT 59.661 55.000 0.00 0.00 0.00 4.44
3744 4413 0.397254 CACCCATCTACTCCCTCCGT 60.397 60.000 0.00 0.00 0.00 4.69
3745 4414 0.106167 TCACCCATCTACTCCCTCCG 60.106 60.000 0.00 0.00 0.00 4.63
3746 4415 2.176247 TTCACCCATCTACTCCCTCC 57.824 55.000 0.00 0.00 0.00 4.30
3747 4416 3.181450 CCATTTCACCCATCTACTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
3748 4417 2.780010 CCATTTCACCCATCTACTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
3749 4418 2.158608 CCCATTTCACCCATCTACTCCC 60.159 54.545 0.00 0.00 0.00 4.30
3750 4419 2.509964 ACCCATTTCACCCATCTACTCC 59.490 50.000 0.00 0.00 0.00 3.85
3751 4420 3.933861 ACCCATTTCACCCATCTACTC 57.066 47.619 0.00 0.00 0.00 2.59
3752 4421 4.631234 TCTACCCATTTCACCCATCTACT 58.369 43.478 0.00 0.00 0.00 2.57
3753 4422 5.367945 TTCTACCCATTTCACCCATCTAC 57.632 43.478 0.00 0.00 0.00 2.59
3756 4425 6.601332 TCTATTTCTACCCATTTCACCCATC 58.399 40.000 0.00 0.00 0.00 3.51
3791 4460 8.138365 TGGTTGTATCTCGACATATTTTTAGC 57.862 34.615 0.00 0.00 32.31 3.09
3805 4474 3.876914 TGATGCGGAAATGGTTGTATCTC 59.123 43.478 0.00 0.00 0.00 2.75
3815 4484 6.470235 GTCTTGAATTACTTGATGCGGAAATG 59.530 38.462 0.00 0.00 0.00 2.32
3819 4488 3.616821 CGTCTTGAATTACTTGATGCGGA 59.383 43.478 0.00 0.00 0.00 5.54
3824 4493 4.469945 TCCCTCCGTCTTGAATTACTTGAT 59.530 41.667 0.00 0.00 0.00 2.57
3825 4494 3.835978 TCCCTCCGTCTTGAATTACTTGA 59.164 43.478 0.00 0.00 0.00 3.02
3884 4553 4.940463 TCGAGTACCCACTGTAATATTGC 58.060 43.478 0.00 0.00 34.21 3.56
3908 4577 2.306847 GCCCATACCTTAACCATGTGG 58.693 52.381 0.00 0.00 42.17 4.17
3910 4579 3.971468 ATGCCCATACCTTAACCATGT 57.029 42.857 0.00 0.00 0.00 3.21
3911 4580 6.916360 AAATATGCCCATACCTTAACCATG 57.084 37.500 0.00 0.00 0.00 3.66
3919 4593 3.652055 TGCCAAAAATATGCCCATACCT 58.348 40.909 0.00 0.00 0.00 3.08
3922 4596 4.387598 GCATTGCCAAAAATATGCCCATA 58.612 39.130 0.00 0.00 37.90 2.74
3951 4625 4.515567 CGTACACATCACTAGCTGGATAGA 59.484 45.833 3.17 0.00 0.00 1.98
3959 4633 1.134367 TCAGGCGTACACATCACTAGC 59.866 52.381 0.00 0.00 0.00 3.42
3965 4639 0.249398 AGGGTTCAGGCGTACACATC 59.751 55.000 0.00 0.00 0.00 3.06
4001 4675 6.588756 CCTCCGCTTGCGAAGTAAAATATATA 59.411 38.462 16.99 0.00 0.00 0.86
4002 4676 5.408604 CCTCCGCTTGCGAAGTAAAATATAT 59.591 40.000 16.99 0.00 0.00 0.86
4003 4677 4.748102 CCTCCGCTTGCGAAGTAAAATATA 59.252 41.667 16.99 0.00 0.00 0.86
4004 4678 3.560068 CCTCCGCTTGCGAAGTAAAATAT 59.440 43.478 16.99 0.00 0.00 1.28
4006 4680 1.737793 CCTCCGCTTGCGAAGTAAAAT 59.262 47.619 16.99 0.00 0.00 1.82
4035 4709 2.057140 TGGCTGCCTATGATACATGGT 58.943 47.619 21.03 0.00 0.00 3.55
4041 4715 2.118679 AGTGTGTGGCTGCCTATGATA 58.881 47.619 21.03 0.00 0.00 2.15
4043 4717 0.692476 AAGTGTGTGGCTGCCTATGA 59.308 50.000 21.03 0.00 0.00 2.15
4046 4720 0.692476 ATCAAGTGTGTGGCTGCCTA 59.308 50.000 21.03 6.16 0.00 3.93
4050 4724 1.229428 AACGATCAAGTGTGTGGCTG 58.771 50.000 0.00 0.00 0.00 4.85
4059 4733 9.416794 GTCTCATTCATATCATAACGATCAAGT 57.583 33.333 0.00 0.00 35.39 3.16
4062 4736 7.538678 CGTGTCTCATTCATATCATAACGATCA 59.461 37.037 0.00 0.00 35.39 2.92
4063 4737 7.539022 ACGTGTCTCATTCATATCATAACGATC 59.461 37.037 0.00 0.00 35.39 3.69
4064 4738 7.371159 ACGTGTCTCATTCATATCATAACGAT 58.629 34.615 0.00 0.00 38.21 3.73
4065 4739 6.735130 ACGTGTCTCATTCATATCATAACGA 58.265 36.000 0.00 0.00 0.00 3.85
4066 4740 6.993175 ACGTGTCTCATTCATATCATAACG 57.007 37.500 0.00 0.00 0.00 3.18
4075 4749 9.981114 TTACATGATAATACGTGTCTCATTCAT 57.019 29.630 0.00 0.00 40.03 2.57
4076 4750 9.810545 TTTACATGATAATACGTGTCTCATTCA 57.189 29.630 0.00 0.00 40.03 2.57
4107 4781 5.056480 GCCACCAAAAACTATCTGCTTTTT 58.944 37.500 0.00 0.00 31.20 1.94
4108 4782 4.631131 GCCACCAAAAACTATCTGCTTTT 58.369 39.130 0.00 0.00 0.00 2.27
4109 4783 3.305335 CGCCACCAAAAACTATCTGCTTT 60.305 43.478 0.00 0.00 0.00 3.51
4131 4805 2.591715 AGGTTGTGTGTGCGGCTC 60.592 61.111 0.00 0.00 0.00 4.70
4145 4819 0.765510 AAGTGAGAAAAGGCCGAGGT 59.234 50.000 0.00 0.00 0.00 3.85
4176 4850 2.358582 CACCATGTTTGCTTGACAGTGA 59.641 45.455 0.00 0.00 29.56 3.41
4237 4911 2.831526 TCTGTTAGTGGCTAGCATGACA 59.168 45.455 18.24 13.10 0.00 3.58
4256 4930 1.825474 CTAGGTCGTGTGGGTCATTCT 59.175 52.381 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.