Multiple sequence alignment - TraesCS1B01G229200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G229200 chr1B 100.000 4881 0 0 3210 8090 411571978 411567098 0.000000e+00 9014.0
1 TraesCS1B01G229200 chr1B 100.000 2929 0 0 1 2929 411575187 411572259 0.000000e+00 5409.0
2 TraesCS1B01G229200 chr1B 82.778 180 27 2 4514 4689 210146297 210146118 3.020000e-34 158.0
3 TraesCS1B01G229200 chr1B 83.133 166 21 6 4773 4937 210146078 210145919 2.350000e-30 145.0
4 TraesCS1B01G229200 chr1B 89.855 69 6 1 3795 3862 585317531 585317599 4.020000e-13 87.9
5 TraesCS1B01G229200 chr1B 97.727 44 1 0 4634 4677 3787540 3787497 8.710000e-10 76.8
6 TraesCS1B01G229200 chr1B 96.875 32 0 1 2061 2092 599224035 599224065 1.500000e-02 52.8
7 TraesCS1B01G229200 chr1A 92.796 2943 149 29 4779 7710 381307424 381304534 0.000000e+00 4202.0
8 TraesCS1B01G229200 chr1A 94.013 1353 67 6 619 1962 381312700 381311353 0.000000e+00 2037.0
9 TraesCS1B01G229200 chr1A 92.590 1309 63 10 3501 4781 381308762 381307460 0.000000e+00 1849.0
10 TraesCS1B01G229200 chr1A 92.857 532 24 8 2006 2532 381310011 381309489 0.000000e+00 760.0
11 TraesCS1B01G229200 chr1A 90.704 398 24 4 7659 8045 381304534 381304139 1.200000e-142 518.0
12 TraesCS1B01G229200 chr1A 92.411 224 15 2 123 345 381314248 381314026 1.310000e-82 318.0
13 TraesCS1B01G229200 chr1A 93.529 170 7 1 329 498 381314012 381313847 4.850000e-62 250.0
14 TraesCS1B01G229200 chr1A 93.750 160 9 1 2525 2684 381308917 381308759 1.050000e-58 239.0
15 TraesCS1B01G229200 chr1A 81.855 248 35 9 4261 4505 13304081 13303841 4.950000e-47 200.0
16 TraesCS1B01G229200 chr1A 84.337 166 21 5 4773 4937 167159472 167159633 3.020000e-34 158.0
17 TraesCS1B01G229200 chr1A 94.118 51 2 1 1964 2013 381310101 381310051 8.710000e-10 76.8
18 TraesCS1B01G229200 chrUn 93.109 1190 46 15 5262 6445 11031661 11030502 0.000000e+00 1711.0
19 TraesCS1B01G229200 chrUn 95.686 1020 40 4 996 2013 11036814 11035797 0.000000e+00 1637.0
20 TraesCS1B01G229200 chrUn 94.494 890 40 7 2045 2929 11035688 11034803 0.000000e+00 1363.0
21 TraesCS1B01G229200 chrUn 92.604 960 39 10 6462 7412 11030516 11029580 0.000000e+00 1351.0
22 TraesCS1B01G229200 chrUn 90.960 885 37 16 123 1000 268920030 268919182 0.000000e+00 1151.0
23 TraesCS1B01G229200 chrUn 89.921 764 35 10 3881 4623 11034062 11033320 0.000000e+00 946.0
24 TraesCS1B01G229200 chrUn 97.368 494 10 3 4773 5265 11032274 11031783 0.000000e+00 837.0
25 TraesCS1B01G229200 chrUn 87.596 653 46 5 3211 3852 11034776 11034148 0.000000e+00 725.0
26 TraesCS1B01G229200 chrUn 89.826 403 19 5 7659 8039 11029179 11028777 1.570000e-136 497.0
27 TraesCS1B01G229200 chrUn 81.651 436 58 14 4260 4682 19233580 19233154 7.770000e-90 342.0
28 TraesCS1B01G229200 chrUn 83.566 286 13 21 7431 7710 11029436 11029179 3.770000e-58 237.0
29 TraesCS1B01G229200 chrUn 91.071 168 7 2 4614 4781 11032466 11032307 3.800000e-53 220.0
30 TraesCS1B01G229200 chr1D 79.215 433 73 14 4269 4689 233336733 233337160 1.330000e-72 285.0
31 TraesCS1B01G229200 chr1D 80.723 249 40 7 4261 4507 11143945 11143703 3.850000e-43 187.0
32 TraesCS1B01G229200 chr1D 84.348 115 14 2 4579 4689 136947486 136947372 8.580000e-20 110.0
33 TraesCS1B01G229200 chr1D 82.524 103 15 3 3746 3847 433292547 433292647 4.020000e-13 87.9
34 TraesCS1B01G229200 chr2D 85.238 210 31 0 5010 5219 493524330 493524121 4.920000e-52 217.0
35 TraesCS1B01G229200 chr2D 91.489 47 3 1 2045 2091 586771170 586771125 6.780000e-06 63.9
36 TraesCS1B01G229200 chr3A 76.267 434 84 15 4261 4688 32399129 32398709 6.360000e-51 213.0
37 TraesCS1B01G229200 chr2B 84.762 210 32 0 5010 5219 581711779 581711570 2.290000e-50 211.0
38 TraesCS1B01G229200 chr2B 92.784 97 5 1 6399 6495 206114727 206114821 1.090000e-28 139.0
39 TraesCS1B01G229200 chr2B 88.889 99 9 1 6397 6495 206114823 206114727 3.970000e-23 121.0
40 TraesCS1B01G229200 chr2B 77.778 171 28 9 4783 4950 406532846 406532683 6.680000e-16 97.1
41 TraesCS1B01G229200 chr2A 83.857 223 34 2 4999 5219 640083597 640083819 2.290000e-50 211.0
42 TraesCS1B01G229200 chr2A 91.667 84 7 0 4688 4771 102688041 102688124 5.130000e-22 117.0
43 TraesCS1B01G229200 chr2A 90.588 85 8 0 4689 4773 102688124 102688040 6.640000e-21 113.0
44 TraesCS1B01G229200 chr3D 86.010 193 20 6 4503 4688 105437773 105437581 4.950000e-47 200.0
45 TraesCS1B01G229200 chr5A 81.982 222 35 5 4470 4689 539065903 539066121 4.990000e-42 183.0
46 TraesCS1B01G229200 chr5A 87.069 116 15 0 6388 6503 593329737 593329622 1.830000e-26 132.0
47 TraesCS1B01G229200 chr7B 94.845 97 5 0 6399 6495 539218283 539218379 1.410000e-32 152.0
48 TraesCS1B01G229200 chr7B 88.889 90 10 0 4686 4775 187783139 187783228 2.390000e-20 111.0
49 TraesCS1B01G229200 chr7B 80.537 149 22 6 4799 4945 449551406 449551549 3.090000e-19 108.0
50 TraesCS1B01G229200 chr7A 94.845 97 5 0 6399 6495 581374249 581374345 1.410000e-32 152.0
51 TraesCS1B01G229200 chr7A 84.270 89 12 2 2006 2093 477232476 477232563 1.450000e-12 86.1
52 TraesCS1B01G229200 chr7A 92.683 41 2 1 2055 2095 730847620 730847659 3.150000e-04 58.4
53 TraesCS1B01G229200 chr7A 100.000 28 0 0 3951 3978 723266796 723266769 1.500000e-02 52.8
54 TraesCS1B01G229200 chr6D 91.429 105 8 1 6391 6495 41640912 41640809 8.460000e-30 143.0
55 TraesCS1B01G229200 chr6D 88.172 93 7 3 4683 4773 401309304 401309394 3.090000e-19 108.0
56 TraesCS1B01G229200 chr6D 78.512 121 23 3 4822 4941 324821077 324821195 8.710000e-10 76.8
57 TraesCS1B01G229200 chr6D 96.875 32 1 0 4259 4290 129708934 129708965 4.000000e-03 54.7
58 TraesCS1B01G229200 chr6A 90.476 105 9 1 6391 6495 52297325 52297222 3.940000e-28 137.0
59 TraesCS1B01G229200 chr5B 87.931 116 14 0 6388 6503 580835522 580835407 3.940000e-28 137.0
60 TraesCS1B01G229200 chr5B 94.118 85 5 0 4688 4772 50469129 50469213 6.590000e-26 130.0
61 TraesCS1B01G229200 chr6B 81.818 154 23 5 2775 2927 85111653 85111504 3.070000e-24 124.0
62 TraesCS1B01G229200 chr6B 87.755 98 6 4 4683 4778 601883779 601883872 8.580000e-20 110.0
63 TraesCS1B01G229200 chr5D 88.764 89 10 0 4688 4776 297499910 297499822 8.580000e-20 110.0
64 TraesCS1B01G229200 chr5D 77.707 157 20 13 4791 4942 27375031 27375177 1.870000e-11 82.4
65 TraesCS1B01G229200 chr4D 80.128 156 20 8 4790 4942 471995149 471995296 1.110000e-18 106.0
66 TraesCS1B01G229200 chr4A 86.747 83 10 1 2006 2087 681356582 681356500 3.110000e-14 91.6
67 TraesCS1B01G229200 chr4B 100.000 29 0 0 2061 2089 512761766 512761794 4.000000e-03 54.7
68 TraesCS1B01G229200 chr4B 100.000 28 0 0 2061 2088 653412352 653412379 1.500000e-02 52.8
69 TraesCS1B01G229200 chr3B 96.875 32 0 1 3948 3978 27167573 27167604 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G229200 chr1B 411567098 411575187 8089 True 7211.500000 9014 100.000000 1 8090 2 chr1B.!!$R3 8089
1 TraesCS1B01G229200 chr1A 381304139 381314248 10109 True 1138.866667 4202 92.974222 123 8045 9 chr1A.!!$R2 7922
2 TraesCS1B01G229200 chrUn 268919182 268920030 848 True 1151.000000 1151 90.960000 123 1000 1 chrUn.!!$R2 877
3 TraesCS1B01G229200 chrUn 11028777 11036814 8037 True 952.400000 1711 91.524100 996 8039 10 chrUn.!!$R3 7043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.041663 ACAAATCGTGCGTCCGTTTG 60.042 50.0 15.02 15.02 36.18 2.93 F
865 1969 0.248134 CTCGTCACCGTTCCGATCTC 60.248 60.0 0.00 0.00 35.01 2.75 F
1379 2484 0.249868 CCCGTCTTTGCAGTGAGACA 60.250 55.0 20.07 0.00 41.80 3.41 F
2787 5804 0.110644 GTCGCTGCCGAAAAAGTCTG 60.111 55.0 0.00 0.00 46.34 3.51 F
3481 6499 0.461961 GACGCTCTCCATAAGGCTGT 59.538 55.0 0.00 0.00 33.74 4.40 F
4052 7152 0.251165 GAACACCTTAGCCTTGCCCA 60.251 55.0 0.00 0.00 0.00 5.36 F
5458 9598 0.100682 CACAGATGCAGCCTCAATGC 59.899 55.0 0.00 0.00 44.11 3.56 F
5583 9723 0.804989 ATTGCTCGTGGCTTTAGTGC 59.195 50.0 5.00 0.00 42.39 4.40 F
6663 10812 0.776810 TTGTGTGTCCCATCCCATGT 59.223 50.0 0.00 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 2459 0.107410 ACTGCAAAGACGGGTGAACA 60.107 50.000 0.00 0.00 0.00 3.18 R
2768 5785 0.110644 CAGACTTTTTCGGCAGCGAC 60.111 55.000 0.00 0.00 0.00 5.19 R
2837 5854 0.400213 TCACGGGCTTGATTTGGAGT 59.600 50.000 0.00 0.00 0.00 3.85 R
3620 6646 0.108377 TCGATGCTTCGGCTGCTTAA 60.108 50.000 20.35 0.00 45.53 1.85 R
5440 9580 1.035932 GGCATTGAGGCTGCATCTGT 61.036 55.000 15.78 1.14 41.47 3.41 R
5570 9710 1.601903 TGAACAAGCACTAAAGCCACG 59.398 47.619 0.00 0.00 34.23 4.94 R
6585 10734 1.974265 TTCCCACGAAACAGCATCAA 58.026 45.000 0.00 0.00 0.00 2.57 R
6936 11091 1.980765 TCTTGGCTGAGTCAAGGATGT 59.019 47.619 24.82 0.00 44.33 3.06 R
7746 12096 0.324614 TGATCCAACATCAGGCACGT 59.675 50.000 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.379625 CGCGAGCGCACTATCGAC 61.380 66.667 19.38 10.13 41.40 4.20
23 24 3.025176 GCGAGCGCACTATCGACC 61.025 66.667 19.38 0.37 41.40 4.79
24 25 2.353607 CGAGCGCACTATCGACCC 60.354 66.667 11.47 0.00 41.40 4.46
25 26 2.805546 GAGCGCACTATCGACCCA 59.194 61.111 11.47 0.00 0.00 4.51
26 27 1.141019 GAGCGCACTATCGACCCAA 59.859 57.895 11.47 0.00 0.00 4.12
27 28 0.459585 GAGCGCACTATCGACCCAAA 60.460 55.000 11.47 0.00 0.00 3.28
28 29 0.739813 AGCGCACTATCGACCCAAAC 60.740 55.000 11.47 0.00 0.00 2.93
29 30 1.017177 GCGCACTATCGACCCAAACA 61.017 55.000 0.30 0.00 0.00 2.83
30 31 1.434555 CGCACTATCGACCCAAACAA 58.565 50.000 0.00 0.00 0.00 2.83
31 32 1.801771 CGCACTATCGACCCAAACAAA 59.198 47.619 0.00 0.00 0.00 2.83
32 33 2.224549 CGCACTATCGACCCAAACAAAA 59.775 45.455 0.00 0.00 0.00 2.44
33 34 3.304123 CGCACTATCGACCCAAACAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
72 73 3.166434 TGGCCGACCCAAACAGAT 58.834 55.556 0.00 0.00 41.82 2.90
73 74 2.378211 TGGCCGACCCAAACAGATA 58.622 52.632 0.00 0.00 41.82 1.98
74 75 0.693622 TGGCCGACCCAAACAGATAA 59.306 50.000 0.00 0.00 41.82 1.75
75 76 1.074084 TGGCCGACCCAAACAGATAAA 59.926 47.619 0.00 0.00 41.82 1.40
76 77 2.164338 GGCCGACCCAAACAGATAAAA 58.836 47.619 0.00 0.00 0.00 1.52
77 78 2.559231 GGCCGACCCAAACAGATAAAAA 59.441 45.455 0.00 0.00 0.00 1.94
95 96 2.681152 AAAAGACAAATCGTGCGTCC 57.319 45.000 0.00 0.00 0.00 4.79
96 97 0.511221 AAAGACAAATCGTGCGTCCG 59.489 50.000 0.00 0.00 0.00 4.79
97 98 0.599204 AAGACAAATCGTGCGTCCGT 60.599 50.000 0.00 0.00 0.00 4.69
98 99 0.599204 AGACAAATCGTGCGTCCGTT 60.599 50.000 0.00 0.00 0.00 4.44
99 100 0.233848 GACAAATCGTGCGTCCGTTT 59.766 50.000 0.00 0.00 0.00 3.60
100 101 0.041663 ACAAATCGTGCGTCCGTTTG 60.042 50.000 15.02 15.02 36.18 2.93
101 102 0.724453 CAAATCGTGCGTCCGTTTGG 60.724 55.000 11.77 0.00 31.45 3.28
102 103 1.847890 AAATCGTGCGTCCGTTTGGG 61.848 55.000 0.00 0.00 35.24 4.12
103 104 2.999739 AATCGTGCGTCCGTTTGGGT 63.000 55.000 0.00 0.00 37.00 4.51
104 105 3.708734 CGTGCGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
105 106 3.351416 GTGCGTCCGTTTGGGTCC 61.351 66.667 0.00 0.00 37.00 4.46
106 107 4.973055 TGCGTCCGTTTGGGTCCG 62.973 66.667 0.00 0.00 37.00 4.79
127 128 1.448985 GCGTGGGAGTGCTTTTATGA 58.551 50.000 0.00 0.00 0.00 2.15
167 169 5.362556 TTGCACTCAGCTAATCAAACTTC 57.637 39.130 0.00 0.00 45.94 3.01
168 170 4.645535 TGCACTCAGCTAATCAAACTTCT 58.354 39.130 0.00 0.00 45.94 2.85
221 224 3.181510 GGGTTATCACAATCTGTCGCAAC 60.182 47.826 0.00 0.00 0.00 4.17
246 249 6.560068 CGACAAATACAAAACAATGCACACTG 60.560 38.462 0.00 0.00 0.00 3.66
389 422 7.071824 TCCTTTCACCTGGGAAAATGTATTTTT 59.928 33.333 0.00 0.00 39.86 1.94
716 1819 9.183368 CTTTTGAGGGAGCTTCTCTTTATTTAT 57.817 33.333 15.83 0.00 32.78 1.40
809 1913 2.477189 GCGCTTGCCGTAATTACAACAT 60.477 45.455 15.67 0.00 39.71 2.71
862 1966 2.882876 CCTCGTCACCGTTCCGAT 59.117 61.111 0.00 0.00 35.01 4.18
863 1967 1.226603 CCTCGTCACCGTTCCGATC 60.227 63.158 0.00 0.00 35.01 3.69
864 1968 1.654954 CCTCGTCACCGTTCCGATCT 61.655 60.000 0.00 0.00 35.01 2.75
865 1969 0.248134 CTCGTCACCGTTCCGATCTC 60.248 60.000 0.00 0.00 35.01 2.75
1208 2312 3.499050 CGACGTCGGTGAGGATCT 58.501 61.111 29.70 0.00 33.35 2.75
1241 2345 3.115554 CGGCCTCTGTTTCTTGTTTTTG 58.884 45.455 0.00 0.00 0.00 2.44
1348 2453 3.628646 ATGCCTGTGGGAAGCGACC 62.629 63.158 0.00 0.00 33.58 4.79
1365 2470 3.708734 CCGCGTTGTTCACCCGTC 61.709 66.667 4.92 0.00 0.00 4.79
1379 2484 0.249868 CCCGTCTTTGCAGTGAGACA 60.250 55.000 20.07 0.00 41.80 3.41
1445 2550 5.041287 TCGATTCCGTATTGCTCTGTTTAG 58.959 41.667 0.00 0.00 37.05 1.85
1475 2580 0.321919 ACGTCCATGCTTCATGTGCT 60.322 50.000 12.86 0.00 39.94 4.40
1482 2587 4.891168 TCCATGCTTCATGTGCTTATCATT 59.109 37.500 12.86 0.00 39.94 2.57
1527 2632 5.661759 GGGGAAAGAAACAGAGGATAGTAGA 59.338 44.000 0.00 0.00 0.00 2.59
1535 2640 6.777213 AACAGAGGATAGTAGACGAAACAT 57.223 37.500 0.00 0.00 0.00 2.71
1537 2642 7.876936 ACAGAGGATAGTAGACGAAACATAA 57.123 36.000 0.00 0.00 0.00 1.90
1558 2663 2.206576 AGGGTTGCTGAAGATGGAAC 57.793 50.000 0.00 0.00 35.48 3.62
1658 2763 7.210873 GGATTACGTGATTTTCTGGTAGAGAT 58.789 38.462 0.00 0.00 0.00 2.75
1734 2839 1.630369 TGGCTGATTGTCTGTTAGGCT 59.370 47.619 0.00 0.00 35.27 4.58
1742 2847 3.752359 TGTCTGTTAGGCTAGTAGGGT 57.248 47.619 0.00 0.00 0.00 4.34
1771 2876 9.003658 TCAAGCTTCAGTCTTTTATCTTTTAGG 57.996 33.333 0.00 0.00 0.00 2.69
1773 2878 6.942576 AGCTTCAGTCTTTTATCTTTTAGGCA 59.057 34.615 0.00 0.00 0.00 4.75
1785 2890 6.715347 ATCTTTTAGGCAATGGAATGGTAC 57.285 37.500 0.00 0.00 0.00 3.34
1800 2905 4.989279 ATGGTACTTAAGGCAAATGCAG 57.011 40.909 7.53 0.00 44.36 4.41
1927 3032 9.595823 TTTTCCTAGTGTAATACTGTAGATTGC 57.404 33.333 0.00 0.00 40.65 3.56
1935 3040 1.668826 ACTGTAGATTGCCCAGGGAA 58.331 50.000 10.89 0.00 0.00 3.97
2010 4365 3.128938 CCAGGACACACGTTTAACCAAAA 59.871 43.478 0.00 0.00 0.00 2.44
2011 4366 4.202070 CCAGGACACACGTTTAACCAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
2012 4367 5.008811 CCAGGACACACGTTTAACCAAAATA 59.991 40.000 0.00 0.00 0.00 1.40
2015 4370 6.319405 AGGACACACGTTTAACCAAAATAACT 59.681 34.615 0.00 0.00 0.00 2.24
2016 4371 6.415573 GGACACACGTTTAACCAAAATAACTG 59.584 38.462 0.00 0.00 0.00 3.16
2017 4372 6.854778 ACACACGTTTAACCAAAATAACTGT 58.145 32.000 0.00 0.00 0.00 3.55
2043 4449 7.547370 TGTGGTTTTAGTTCAAATTTGGACTTG 59.453 33.333 31.95 1.71 44.52 3.16
2051 4484 6.976636 TTCAAATTTGGACTTGTTTGAACC 57.023 33.333 17.90 0.00 42.38 3.62
2084 4517 4.010349 CACTTATTTTGGGACAGAGGGAC 58.990 47.826 0.00 0.00 42.39 4.46
2142 4579 8.324567 CGCTTGTTTTTAAGATTGCAAAGTTAA 58.675 29.630 1.71 7.82 0.00 2.01
2171 4608 7.333921 TCAATAATGATTTTTGGCCAATCACAC 59.666 33.333 21.26 10.70 42.17 3.82
2247 4684 8.231837 GTGTTGTCGCTGAACCTAATTAATAAA 58.768 33.333 0.00 0.00 0.00 1.40
2515 4952 2.484889 GTTGGTTCGAGTCAGCTTCTT 58.515 47.619 0.00 0.00 0.00 2.52
2569 5585 5.947228 CATGGGTGGAATCATACACATAC 57.053 43.478 4.68 0.00 38.80 2.39
2580 5596 2.973694 TACACATACCGAAAGAGGGC 57.026 50.000 0.00 0.00 35.02 5.19
2718 5734 5.772393 ATCTTACCCATTCCACTAACACA 57.228 39.130 0.00 0.00 0.00 3.72
2719 5735 5.160607 TCTTACCCATTCCACTAACACAG 57.839 43.478 0.00 0.00 0.00 3.66
2720 5736 4.595781 TCTTACCCATTCCACTAACACAGT 59.404 41.667 0.00 0.00 38.32 3.55
2721 5737 5.781306 TCTTACCCATTCCACTAACACAGTA 59.219 40.000 0.00 0.00 34.98 2.74
2723 5739 4.648651 ACCCATTCCACTAACACAGTAAC 58.351 43.478 0.00 0.00 34.98 2.50
2725 5741 4.695455 CCCATTCCACTAACACAGTAACTG 59.305 45.833 0.00 0.00 34.98 3.16
2726 5742 4.154195 CCATTCCACTAACACAGTAACTGC 59.846 45.833 0.00 0.00 34.98 4.40
2764 5781 6.350277 GGATCGCTGTAGTAACTGCCTATATT 60.350 42.308 2.41 0.00 45.06 1.28
2768 5785 4.878439 TGTAGTAACTGCCTATATTGCGG 58.122 43.478 4.64 4.64 40.98 5.69
2786 5803 1.228657 GGTCGCTGCCGAAAAAGTCT 61.229 55.000 0.00 0.00 46.34 3.24
2787 5804 0.110644 GTCGCTGCCGAAAAAGTCTG 60.111 55.000 0.00 0.00 46.34 3.51
2837 5854 3.384467 GCCTGCATAATTTTTAGAGGCCA 59.616 43.478 5.01 0.00 38.89 5.36
2847 5864 4.380843 TTTTAGAGGCCACTCCAAATCA 57.619 40.909 5.75 0.00 45.11 2.57
2862 5879 2.543067 AATCAAGCCCGTGAGCCTCC 62.543 60.000 0.00 0.00 0.00 4.30
2897 5914 2.676471 GCGCTGATTTGGGGTGGT 60.676 61.111 0.00 0.00 0.00 4.16
2907 5924 1.289982 TTGGGGTGGTCCTCCAAACA 61.290 55.000 12.07 4.97 46.15 2.83
2916 5933 1.528309 CCTCCAAACACAACCGCCT 60.528 57.895 0.00 0.00 0.00 5.52
3230 6247 4.120331 GCCCTGTCAATGGCGCAC 62.120 66.667 10.83 0.00 38.00 5.34
3231 6248 2.360350 CCCTGTCAATGGCGCACT 60.360 61.111 10.83 0.00 0.00 4.40
3239 6256 1.202510 TCAATGGCGCACTTGCTTTTT 60.203 42.857 10.83 0.00 39.32 1.94
3242 6259 0.527385 TGGCGCACTTGCTTTTTCAC 60.527 50.000 10.83 0.00 39.32 3.18
3246 6263 0.597377 GCACTTGCTTTTTCACCGGG 60.597 55.000 6.32 0.00 38.21 5.73
3250 6267 1.953686 CTTGCTTTTTCACCGGGAAGA 59.046 47.619 6.32 0.00 36.72 2.87
3277 6294 3.459598 CACTCTTCCATAATCTTCCCCCA 59.540 47.826 0.00 0.00 0.00 4.96
3283 6301 2.377869 CCATAATCTTCCCCCATGCTCT 59.622 50.000 0.00 0.00 0.00 4.09
3334 6352 3.454573 CCCGTAGCCGCCACACTA 61.455 66.667 0.00 0.00 0.00 2.74
3338 6356 1.595357 GTAGCCGCCACACTAACCT 59.405 57.895 0.00 0.00 0.00 3.50
3344 6362 0.462047 CGCCACACTAACCTCCCATC 60.462 60.000 0.00 0.00 0.00 3.51
3385 6403 2.342279 CGCCTCGTGGACCTTTCA 59.658 61.111 7.92 0.00 34.57 2.69
3395 6413 1.289380 GACCTTTCACGGCGAGACT 59.711 57.895 16.62 0.00 0.00 3.24
3396 6414 1.006102 ACCTTTCACGGCGAGACTG 60.006 57.895 16.62 6.33 0.00 3.51
3399 6417 1.673033 CCTTTCACGGCGAGACTGAAT 60.673 52.381 16.62 0.00 0.00 2.57
3410 6428 0.824759 AGACTGAATAGGACCGCACC 59.175 55.000 0.00 0.00 0.00 5.01
3435 6453 3.519913 GAGAAAGTTATGGGAGAGGGTGT 59.480 47.826 0.00 0.00 0.00 4.16
3452 6470 0.538746 TGTGGCACTACTCCGAGTCA 60.539 55.000 19.83 0.00 0.00 3.41
3481 6499 0.461961 GACGCTCTCCATAAGGCTGT 59.538 55.000 0.00 0.00 33.74 4.40
3513 6531 4.093291 CAGAGCGCCTCCCTGCTT 62.093 66.667 2.29 0.00 42.60 3.91
3591 6617 2.294074 GGCTACACAAGGACACACAAA 58.706 47.619 0.00 0.00 0.00 2.83
3611 6637 1.300697 GTTCGTCAACCGCCTGACT 60.301 57.895 11.79 0.00 43.01 3.41
3621 6647 4.065110 GCCTGACTGCGGAAGTTT 57.935 55.556 0.00 0.00 40.07 2.66
3689 6715 6.810182 GCCGAACTAGTTGAAATTGTAGTAGA 59.190 38.462 14.14 0.00 0.00 2.59
3858 6886 4.168014 CAATGACAAACCGATTCCACATG 58.832 43.478 0.00 0.00 0.00 3.21
3865 6893 2.923121 ACCGATTCCACATGGAGAATG 58.077 47.619 14.97 6.51 46.36 2.67
3894 6979 6.070481 TGGAGGCTATGTTTATGGCGATTATA 60.070 38.462 0.00 0.00 41.28 0.98
3933 7018 1.444836 CGGCCTCCAAAACGTTATGA 58.555 50.000 0.00 0.00 0.00 2.15
4052 7152 0.251165 GAACACCTTAGCCTTGCCCA 60.251 55.000 0.00 0.00 0.00 5.36
4296 7401 4.501559 TCGTGCGTTGCTATGAAACTATAC 59.498 41.667 0.00 0.00 0.00 1.47
4343 7448 8.662141 TGGCTTAGAAAGTCGTTAAAATACATC 58.338 33.333 0.00 0.00 35.37 3.06
4349 7454 7.814107 AGAAAGTCGTTAAAATACATCGGTGTA 59.186 33.333 11.65 11.65 44.43 2.90
4373 7478 2.953821 CCTTTGCGTGCGGTTCAT 59.046 55.556 0.00 0.00 0.00 2.57
4376 7481 3.550339 TTTGCGTGCGGTTCATGGC 62.550 57.895 0.00 0.00 32.31 4.40
4424 7529 5.198207 AGATCATGCAACATGAATTGGAGA 58.802 37.500 13.76 0.00 33.05 3.71
4541 7646 2.598565 TCATGGATCGGGTAGGAAGAG 58.401 52.381 0.00 0.00 0.00 2.85
4582 7689 4.816385 TGGAATCACAGTTTGTTCACTCTC 59.184 41.667 0.00 0.00 0.00 3.20
4583 7690 5.059833 GGAATCACAGTTTGTTCACTCTCT 58.940 41.667 0.00 0.00 0.00 3.10
4626 8599 3.662759 ACTTGGTTGGGAAGAGAAACA 57.337 42.857 0.00 0.00 0.00 2.83
4697 8670 8.521176 TGTTATTTGTGTCTTCTACTACCTCTC 58.479 37.037 0.00 0.00 0.00 3.20
4781 8755 6.668283 AGTTACAGAGGGAGTATATGTGTTGT 59.332 38.462 0.00 0.00 0.00 3.32
4867 8881 2.233271 CATGTGGATAGGGGTGCATTC 58.767 52.381 0.00 0.00 0.00 2.67
4916 8930 2.365582 GTGTGAACTCACCACCAACTT 58.634 47.619 7.37 0.00 45.88 2.66
5319 9459 8.020819 TGACATGTTATTTCTGTTCGGATTTTC 58.979 33.333 0.00 0.00 0.00 2.29
5320 9460 7.312899 ACATGTTATTTCTGTTCGGATTTTCC 58.687 34.615 0.00 0.00 0.00 3.13
5350 9490 8.244113 CACTTTTCAACCTTGAACTCTAAAAGT 58.756 33.333 0.00 0.00 45.99 2.66
5360 9500 8.567948 CCTTGAACTCTAAAAGTGCTTGAAATA 58.432 33.333 0.00 0.00 38.58 1.40
5458 9598 0.100682 CACAGATGCAGCCTCAATGC 59.899 55.000 0.00 0.00 44.11 3.56
5488 9628 3.799366 TGCATGCCATCAAATTCCATTC 58.201 40.909 16.68 0.00 0.00 2.67
5574 9714 5.519722 AGTTTGTTTTAGAATTGCTCGTGG 58.480 37.500 0.00 0.00 0.00 4.94
5583 9723 0.804989 ATTGCTCGTGGCTTTAGTGC 59.195 50.000 5.00 0.00 42.39 4.40
5645 9785 3.510719 CGGCATCCATGTTACCAAAAAG 58.489 45.455 0.00 0.00 0.00 2.27
5725 9867 4.806342 TCAAACGGTTTTAGAGTTCAGC 57.194 40.909 2.79 0.00 0.00 4.26
5886 10032 9.947433 ATCATTTCATAAAGAAGCAAAATTCCA 57.053 25.926 0.00 0.00 37.57 3.53
5887 10033 9.426837 TCATTTCATAAAGAAGCAAAATTCCAG 57.573 29.630 0.00 0.00 37.57 3.86
5888 10034 9.211485 CATTTCATAAAGAAGCAAAATTCCAGT 57.789 29.630 0.00 0.00 37.57 4.00
5891 10037 9.691362 TTCATAAAGAAGCAAAATTCCAGTAAC 57.309 29.630 0.00 0.00 0.00 2.50
5892 10038 9.077885 TCATAAAGAAGCAAAATTCCAGTAACT 57.922 29.630 0.00 0.00 0.00 2.24
5893 10039 9.696917 CATAAAGAAGCAAAATTCCAGTAACTT 57.303 29.630 0.00 0.00 0.00 2.66
5894 10040 9.696917 ATAAAGAAGCAAAATTCCAGTAACTTG 57.303 29.630 0.00 0.00 0.00 3.16
5895 10041 6.715347 AGAAGCAAAATTCCAGTAACTTGT 57.285 33.333 0.00 0.00 0.00 3.16
5896 10042 6.507023 AGAAGCAAAATTCCAGTAACTTGTG 58.493 36.000 0.00 0.00 0.00 3.33
5897 10043 5.852282 AGCAAAATTCCAGTAACTTGTGT 57.148 34.783 0.00 0.00 0.00 3.72
5898 10044 6.952773 AGCAAAATTCCAGTAACTTGTGTA 57.047 33.333 0.00 0.00 0.00 2.90
5899 10045 7.524717 AGCAAAATTCCAGTAACTTGTGTAT 57.475 32.000 0.00 0.00 0.00 2.29
5939 10085 8.024285 GTGTATATTCATCCTGCACTCTAGTAC 58.976 40.741 0.00 0.00 0.00 2.73
6078 10224 5.676079 GCTGTATGGTTTAATTCATGCACGT 60.676 40.000 0.00 0.00 33.64 4.49
6200 10347 7.935338 ACATTTTCATTTGTTGCAGTTAGAG 57.065 32.000 0.00 0.00 0.00 2.43
6453 10600 5.642063 CCTCTGTACAATGTAAAATGGACGT 59.358 40.000 0.00 0.00 32.85 4.34
6463 10610 9.093970 CAATGTAAAATGGACGTTGTATAGAGA 57.906 33.333 0.00 0.00 38.47 3.10
6663 10812 0.776810 TTGTGTGTCCCATCCCATGT 59.223 50.000 0.00 0.00 0.00 3.21
6741 10895 3.555966 AGCCCTAATAGTGAAATGCCAC 58.444 45.455 0.00 0.00 37.32 5.01
6767 10921 4.102524 TGGTTTCTCCATCACAACAGTACT 59.897 41.667 0.00 0.00 41.93 2.73
6771 10925 3.006859 TCTCCATCACAACAGTACTGTGG 59.993 47.826 28.55 27.18 44.13 4.17
6777 10931 7.047891 CCATCACAACAGTACTGTGGTATAAT 58.952 38.462 31.03 21.89 45.42 1.28
6813 10967 7.325725 AGGTTTAGGTAGTAATTTGTGGTCT 57.674 36.000 0.00 0.00 0.00 3.85
6814 10968 7.166167 AGGTTTAGGTAGTAATTTGTGGTCTG 58.834 38.462 0.00 0.00 0.00 3.51
6833 10988 6.127925 TGGTCTGCATAAACATGATTCAACTC 60.128 38.462 0.00 0.00 0.00 3.01
6861 11016 4.347583 TCATCCTGCATTTTGGACCTTTTT 59.652 37.500 0.00 0.00 34.90 1.94
6903 11058 7.818997 TTTATACATGTGTTTGGTGGTTACA 57.181 32.000 9.11 0.00 0.00 2.41
6917 11072 7.779754 TGGTGGTTACAGTTATACTAGAACA 57.220 36.000 0.00 0.00 0.00 3.18
7047 11202 3.630769 CACAGAAGCCATCACAGCAATAT 59.369 43.478 0.00 0.00 0.00 1.28
7050 11205 4.097437 CAGAAGCCATCACAGCAATATGTT 59.903 41.667 0.00 0.00 0.00 2.71
7056 11211 4.641541 CCATCACAGCAATATGTTCCAAGA 59.358 41.667 0.00 0.00 0.00 3.02
7083 11238 2.495270 TGGCTTCAAACTTCACAAGCAA 59.505 40.909 4.99 0.00 42.61 3.91
7106 11261 4.951254 TCATGACGAACTTTTACCAGTGA 58.049 39.130 0.00 0.00 0.00 3.41
7243 11398 8.087982 ACTGTATCTGTTTTGTTGTATGACTG 57.912 34.615 0.00 0.00 0.00 3.51
7316 11471 2.024414 GCAGGGTGTTTTTCTGTGTCT 58.976 47.619 0.00 0.00 0.00 3.41
7372 11527 7.303634 AGTTAGTTTCCTATGTTATTGTGCG 57.696 36.000 0.00 0.00 0.00 5.34
7383 11538 9.385902 CCTATGTTATTGTGCGATTATTTTCTG 57.614 33.333 0.00 0.00 0.00 3.02
7389 11544 5.295431 TGTGCGATTATTTTCTGGAGTTG 57.705 39.130 0.00 0.00 0.00 3.16
7400 11555 4.503714 TTCTGGAGTTGTTTGTTCTCCT 57.496 40.909 10.97 0.00 45.46 3.69
7401 11556 4.073293 TCTGGAGTTGTTTGTTCTCCTC 57.927 45.455 10.97 0.00 45.46 3.71
7402 11557 3.142174 CTGGAGTTGTTTGTTCTCCTCC 58.858 50.000 10.97 0.00 45.46 4.30
7403 11558 2.777692 TGGAGTTGTTTGTTCTCCTCCT 59.222 45.455 10.97 0.00 45.46 3.69
7404 11559 3.202151 TGGAGTTGTTTGTTCTCCTCCTT 59.798 43.478 10.97 0.00 45.46 3.36
7405 11560 4.207955 GGAGTTGTTTGTTCTCCTCCTTT 58.792 43.478 0.00 0.00 42.92 3.11
7406 11561 4.036852 GGAGTTGTTTGTTCTCCTCCTTTG 59.963 45.833 0.00 0.00 42.92 2.77
7407 11562 3.954258 AGTTGTTTGTTCTCCTCCTTTGG 59.046 43.478 0.00 0.00 0.00 3.28
7408 11563 3.662759 TGTTTGTTCTCCTCCTTTGGT 57.337 42.857 0.00 0.00 0.00 3.67
7409 11564 3.551846 TGTTTGTTCTCCTCCTTTGGTC 58.448 45.455 0.00 0.00 0.00 4.02
7410 11565 3.202151 TGTTTGTTCTCCTCCTTTGGTCT 59.798 43.478 0.00 0.00 0.00 3.85
7411 11566 4.410883 TGTTTGTTCTCCTCCTTTGGTCTA 59.589 41.667 0.00 0.00 0.00 2.59
7412 11567 5.104277 TGTTTGTTCTCCTCCTTTGGTCTAA 60.104 40.000 0.00 0.00 0.00 2.10
7413 11568 5.640158 TTGTTCTCCTCCTTTGGTCTAAA 57.360 39.130 0.00 0.00 0.00 1.85
7414 11569 5.228945 TGTTCTCCTCCTTTGGTCTAAAG 57.771 43.478 1.79 1.79 44.35 1.85
7421 11576 5.012768 TCCTCCTTTGGTCTAAAGTACCTTG 59.987 44.000 7.79 0.00 43.45 3.61
7464 11761 4.577687 TCTTCATCGCGTATTTGTGTTC 57.422 40.909 5.77 0.00 0.00 3.18
7478 11775 0.605319 GTGTTCGACATTGCCTCCCA 60.605 55.000 0.00 0.00 0.00 4.37
7516 11813 7.377766 TGGTATATGCAAGTTCAGAGTTTTC 57.622 36.000 0.00 0.00 0.00 2.29
7548 11845 1.795768 TGCTGGAGCTTAACGTTGAG 58.204 50.000 15.27 15.27 42.66 3.02
7582 11879 8.079809 ACACAAATTGTAAAGTAATTTCCTCGG 58.920 33.333 0.00 0.00 36.32 4.63
7586 11883 8.502105 AATTGTAAAGTAATTTCCTCGGTAGG 57.498 34.615 0.00 0.00 45.21 3.18
7623 11920 5.368989 CAGAAATACAATGTACTCCCTCCC 58.631 45.833 0.00 0.00 0.00 4.30
7624 11921 5.036916 AGAAATACAATGTACTCCCTCCCA 58.963 41.667 0.00 0.00 0.00 4.37
7626 11923 6.849697 AGAAATACAATGTACTCCCTCCCATA 59.150 38.462 0.00 0.00 0.00 2.74
7627 11924 6.435292 AATACAATGTACTCCCTCCCATAC 57.565 41.667 0.00 0.00 0.00 2.39
7629 11926 2.698797 CAATGTACTCCCTCCCATACGT 59.301 50.000 0.00 0.00 0.00 3.57
7631 11928 3.889859 TGTACTCCCTCCCATACGTAT 57.110 47.619 1.14 1.14 0.00 3.06
7634 11931 2.877866 ACTCCCTCCCATACGTATCAG 58.122 52.381 4.74 2.13 0.00 2.90
7636 11933 1.203137 TCCCTCCCATACGTATCAGGG 60.203 57.143 25.61 25.61 41.94 4.45
7638 11935 1.893801 CCTCCCATACGTATCAGGGAC 59.106 57.143 23.42 0.00 45.15 4.46
7639 11936 1.893801 CTCCCATACGTATCAGGGACC 59.106 57.143 23.42 0.00 45.15 4.46
7640 11937 0.974383 CCCATACGTATCAGGGACCC 59.026 60.000 21.27 0.59 44.30 4.46
7641 11938 0.601558 CCATACGTATCAGGGACCCG 59.398 60.000 4.74 0.00 0.00 5.28
7642 11939 1.325355 CATACGTATCAGGGACCCGT 58.675 55.000 4.74 0.24 35.68 5.28
7644 11941 2.957402 TACGTATCAGGGACCCGTAT 57.043 50.000 4.40 5.36 33.32 3.06
7645 11942 1.325355 ACGTATCAGGGACCCGTATG 58.675 55.000 4.40 7.93 0.00 2.39
7646 11943 1.325355 CGTATCAGGGACCCGTATGT 58.675 55.000 4.40 0.00 0.00 2.29
7648 11945 2.227388 CGTATCAGGGACCCGTATGTAC 59.773 54.545 4.40 4.91 0.00 2.90
7649 11946 1.713297 ATCAGGGACCCGTATGTACC 58.287 55.000 4.40 0.00 39.79 3.34
7825 12183 5.860182 CCATGATTAGTTGAAGCAAACACAG 59.140 40.000 0.00 0.00 36.92 3.66
7942 12300 2.893215 ACTATCCATCATGCCATGGG 57.107 50.000 15.13 0.00 43.40 4.00
8005 12373 2.557317 GAACACGTCCTCTTTTGACCA 58.443 47.619 0.00 0.00 0.00 4.02
8007 12375 1.760613 ACACGTCCTCTTTTGACCAGA 59.239 47.619 0.00 0.00 0.00 3.86
8041 12409 9.258629 TCAATTCTCAACAAATTATCATTCCCT 57.741 29.630 0.00 0.00 0.00 4.20
8046 12414 8.673711 TCTCAACAAATTATCATTCCCTTTACG 58.326 33.333 0.00 0.00 0.00 3.18
8047 12415 8.343168 TCAACAAATTATCATTCCCTTTACGT 57.657 30.769 0.00 0.00 0.00 3.57
8048 12416 8.798402 TCAACAAATTATCATTCCCTTTACGTT 58.202 29.630 0.00 0.00 0.00 3.99
8049 12417 8.859156 CAACAAATTATCATTCCCTTTACGTTG 58.141 33.333 0.00 0.00 0.00 4.10
8050 12418 8.117813 ACAAATTATCATTCCCTTTACGTTGT 57.882 30.769 0.00 0.00 0.00 3.32
8051 12419 8.581578 ACAAATTATCATTCCCTTTACGTTGTT 58.418 29.630 0.00 0.00 0.00 2.83
8052 12420 9.072294 CAAATTATCATTCCCTTTACGTTGTTC 57.928 33.333 0.00 0.00 0.00 3.18
8053 12421 4.939509 ATCATTCCCTTTACGTTGTTCG 57.060 40.909 0.00 0.00 46.00 3.95
8054 12422 3.992643 TCATTCCCTTTACGTTGTTCGA 58.007 40.909 0.00 0.00 42.86 3.71
8055 12423 4.571919 TCATTCCCTTTACGTTGTTCGAT 58.428 39.130 0.00 0.00 42.86 3.59
8056 12424 4.390603 TCATTCCCTTTACGTTGTTCGATG 59.609 41.667 0.00 0.00 42.86 3.84
8057 12425 3.663995 TCCCTTTACGTTGTTCGATGA 57.336 42.857 0.00 0.00 42.86 2.92
8058 12426 4.196626 TCCCTTTACGTTGTTCGATGAT 57.803 40.909 0.00 0.00 42.86 2.45
8059 12427 4.571919 TCCCTTTACGTTGTTCGATGATT 58.428 39.130 0.00 0.00 42.86 2.57
8060 12428 4.628333 TCCCTTTACGTTGTTCGATGATTC 59.372 41.667 0.00 0.00 42.86 2.52
8061 12429 4.390603 CCCTTTACGTTGTTCGATGATTCA 59.609 41.667 0.00 0.00 42.86 2.57
8062 12430 5.445939 CCCTTTACGTTGTTCGATGATTCAG 60.446 44.000 0.00 0.00 42.86 3.02
8063 12431 5.445939 CCTTTACGTTGTTCGATGATTCAGG 60.446 44.000 0.00 0.00 42.86 3.86
8064 12432 1.732259 ACGTTGTTCGATGATTCAGGC 59.268 47.619 0.00 0.00 42.86 4.85
8065 12433 2.002586 CGTTGTTCGATGATTCAGGCT 58.997 47.619 0.00 0.00 42.86 4.58
8066 12434 2.222886 CGTTGTTCGATGATTCAGGCTG 60.223 50.000 8.58 8.58 42.86 4.85
8067 12435 3.002791 GTTGTTCGATGATTCAGGCTGA 58.997 45.455 14.43 14.43 0.00 4.26
8068 12436 3.333029 TGTTCGATGATTCAGGCTGAA 57.667 42.857 30.29 30.29 41.09 3.02
8069 12437 3.002791 TGTTCGATGATTCAGGCTGAAC 58.997 45.455 30.71 22.90 39.45 3.18
8070 12438 3.002791 GTTCGATGATTCAGGCTGAACA 58.997 45.455 30.71 26.94 39.45 3.18
8071 12439 3.548745 TCGATGATTCAGGCTGAACAT 57.451 42.857 30.71 29.62 39.45 2.71
8072 12440 3.200483 TCGATGATTCAGGCTGAACATG 58.800 45.455 31.43 25.19 39.45 3.21
8073 12441 2.941064 CGATGATTCAGGCTGAACATGT 59.059 45.455 31.43 20.21 39.45 3.21
8074 12442 3.242641 CGATGATTCAGGCTGAACATGTG 60.243 47.826 31.43 23.86 39.45 3.21
8075 12443 3.421919 TGATTCAGGCTGAACATGTGA 57.578 42.857 30.71 7.86 39.45 3.58
8076 12444 3.340928 TGATTCAGGCTGAACATGTGAG 58.659 45.455 30.71 0.00 39.45 3.51
8077 12445 2.936919 TTCAGGCTGAACATGTGAGT 57.063 45.000 25.38 0.00 30.26 3.41
8078 12446 2.936919 TCAGGCTGAACATGTGAGTT 57.063 45.000 16.28 0.00 0.00 3.01
8079 12447 2.497138 TCAGGCTGAACATGTGAGTTG 58.503 47.619 16.28 2.79 0.00 3.16
8080 12448 2.104622 TCAGGCTGAACATGTGAGTTGA 59.895 45.455 16.28 5.00 0.00 3.18
8081 12449 3.079578 CAGGCTGAACATGTGAGTTGAT 58.920 45.455 9.42 0.00 0.00 2.57
8082 12450 3.079578 AGGCTGAACATGTGAGTTGATG 58.920 45.455 0.00 0.00 0.00 3.07
8083 12451 2.163010 GGCTGAACATGTGAGTTGATGG 59.837 50.000 0.00 0.00 0.00 3.51
8084 12452 3.076621 GCTGAACATGTGAGTTGATGGA 58.923 45.455 0.00 0.00 0.00 3.41
8085 12453 3.503363 GCTGAACATGTGAGTTGATGGAA 59.497 43.478 0.00 0.00 0.00 3.53
8086 12454 4.157289 GCTGAACATGTGAGTTGATGGAAT 59.843 41.667 0.00 0.00 0.00 3.01
8087 12455 5.355071 GCTGAACATGTGAGTTGATGGAATA 59.645 40.000 0.00 0.00 0.00 1.75
8088 12456 6.039047 GCTGAACATGTGAGTTGATGGAATAT 59.961 38.462 0.00 0.00 0.00 1.28
8089 12457 7.415989 GCTGAACATGTGAGTTGATGGAATATT 60.416 37.037 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.379625 GTCGATAGTGCGCTCGCG 61.380 66.667 9.73 9.32 45.51 5.87
6 7 3.025176 GGTCGATAGTGCGCTCGC 61.025 66.667 9.73 7.38 42.35 5.03
7 8 2.353607 GGGTCGATAGTGCGCTCG 60.354 66.667 9.73 10.01 36.25 5.03
8 9 0.459585 TTTGGGTCGATAGTGCGCTC 60.460 55.000 9.73 4.74 37.40 5.03
9 10 0.739813 GTTTGGGTCGATAGTGCGCT 60.740 55.000 9.73 4.58 37.40 5.92
10 11 1.017177 TGTTTGGGTCGATAGTGCGC 61.017 55.000 0.00 0.00 37.40 6.09
11 12 1.434555 TTGTTTGGGTCGATAGTGCG 58.565 50.000 0.00 0.00 37.40 5.34
12 13 3.907894 TTTTGTTTGGGTCGATAGTGC 57.092 42.857 0.00 0.00 37.40 4.40
30 31 2.758497 CGGCGTCCGTCCTATTTTT 58.242 52.632 9.69 0.00 42.73 1.94
31 32 4.507879 CGGCGTCCGTCCTATTTT 57.492 55.556 9.69 0.00 42.73 1.82
51 52 3.047877 GTTTGGGTCGGCCACTCG 61.048 66.667 9.07 0.00 36.17 4.18
52 53 1.966451 CTGTTTGGGTCGGCCACTC 60.966 63.158 9.07 0.13 36.17 3.51
53 54 1.779061 ATCTGTTTGGGTCGGCCACT 61.779 55.000 9.07 0.00 36.17 4.00
54 55 0.035820 TATCTGTTTGGGTCGGCCAC 60.036 55.000 9.07 0.00 36.17 5.01
55 56 0.693622 TTATCTGTTTGGGTCGGCCA 59.306 50.000 9.07 0.00 36.17 5.36
56 57 1.828979 TTTATCTGTTTGGGTCGGCC 58.171 50.000 0.00 0.00 0.00 6.13
57 58 3.926821 TTTTTATCTGTTTGGGTCGGC 57.073 42.857 0.00 0.00 0.00 5.54
75 76 2.601266 CGGACGCACGATTTGTCTTTTT 60.601 45.455 0.00 0.00 35.47 1.94
76 77 1.070175 CGGACGCACGATTTGTCTTTT 60.070 47.619 0.00 0.00 35.47 2.27
77 78 0.511221 CGGACGCACGATTTGTCTTT 59.489 50.000 0.00 0.00 35.47 2.52
78 79 0.599204 ACGGACGCACGATTTGTCTT 60.599 50.000 6.34 0.00 37.61 3.01
79 80 0.599204 AACGGACGCACGATTTGTCT 60.599 50.000 6.34 0.00 37.61 3.41
80 81 0.233848 AAACGGACGCACGATTTGTC 59.766 50.000 6.34 0.00 37.61 3.18
81 82 0.041663 CAAACGGACGCACGATTTGT 60.042 50.000 6.34 0.00 37.61 2.83
82 83 0.724453 CCAAACGGACGCACGATTTG 60.724 55.000 6.34 11.52 36.06 2.32
83 84 1.572447 CCAAACGGACGCACGATTT 59.428 52.632 6.34 1.27 37.61 2.17
84 85 2.322081 CCCAAACGGACGCACGATT 61.322 57.895 6.34 0.00 37.61 3.34
85 86 2.740826 CCCAAACGGACGCACGAT 60.741 61.111 6.34 0.00 37.61 3.73
86 87 4.224274 ACCCAAACGGACGCACGA 62.224 61.111 6.34 0.00 37.61 4.35
87 88 3.708734 GACCCAAACGGACGCACG 61.709 66.667 0.00 0.00 40.31 5.34
88 89 3.351416 GGACCCAAACGGACGCAC 61.351 66.667 0.00 0.00 34.64 5.34
89 90 4.973055 CGGACCCAAACGGACGCA 62.973 66.667 0.00 0.00 34.64 5.24
106 107 1.644786 ATAAAAGCACTCCCACGCGC 61.645 55.000 5.73 0.00 0.00 6.86
107 108 0.096976 CATAAAAGCACTCCCACGCG 59.903 55.000 3.53 3.53 0.00 6.01
108 109 1.448985 TCATAAAAGCACTCCCACGC 58.551 50.000 0.00 0.00 0.00 5.34
109 110 3.502211 AGTTTCATAAAAGCACTCCCACG 59.498 43.478 0.00 0.00 0.00 4.94
110 111 6.759497 ATAGTTTCATAAAAGCACTCCCAC 57.241 37.500 0.00 0.00 0.00 4.61
111 112 7.775053 AAATAGTTTCATAAAAGCACTCCCA 57.225 32.000 0.00 0.00 0.00 4.37
138 139 3.603158 TTAGCTGAGTGCAATCCGTAA 57.397 42.857 12.27 3.98 45.94 3.18
140 141 2.093500 TGATTAGCTGAGTGCAATCCGT 60.093 45.455 12.27 0.00 45.94 4.69
191 193 7.338800 ACAGATTGTGATAACCCATTTGATC 57.661 36.000 0.00 0.00 0.00 2.92
201 203 3.366724 TCGTTGCGACAGATTGTGATAAC 59.633 43.478 4.64 0.00 0.00 1.89
221 224 5.458452 AGTGTGCATTGTTTTGTATTTGTCG 59.542 36.000 0.00 0.00 0.00 4.35
228 231 3.445450 ACACCAGTGTGCATTGTTTTGTA 59.555 39.130 1.88 0.00 46.86 2.41
246 249 0.874390 TACGACACTCCGTACACACC 59.126 55.000 0.00 0.00 43.20 4.16
255 258 3.754188 ATGTAGACGTTACGACACTCC 57.246 47.619 13.03 0.00 0.00 3.85
404 437 2.413112 ACATGTGATTCTCAAGCGTTCG 59.587 45.455 0.00 0.00 0.00 3.95
581 1684 2.203015 CCCAGCAATACCGTCCGG 60.203 66.667 3.76 3.76 42.03 5.14
583 1686 1.095807 GCTTCCCAGCAATACCGTCC 61.096 60.000 0.00 0.00 46.49 4.79
654 1757 2.825532 GCTTCCCAGCATCCACTAAAAA 59.174 45.455 0.00 0.00 46.49 1.94
716 1819 1.118838 CACTGTTGGGCCCTGAAAAA 58.881 50.000 25.70 5.13 0.00 1.94
792 1896 2.096174 GCGGATGTTGTAATTACGGCAA 59.904 45.455 10.92 0.00 0.00 4.52
862 1966 3.129262 TGGAGAGGAGAGAGAGAGAGA 57.871 52.381 0.00 0.00 0.00 3.10
863 1967 3.649981 AGATGGAGAGGAGAGAGAGAGAG 59.350 52.174 0.00 0.00 0.00 3.20
864 1968 3.648067 GAGATGGAGAGGAGAGAGAGAGA 59.352 52.174 0.00 0.00 0.00 3.10
865 1969 3.555795 CGAGATGGAGAGGAGAGAGAGAG 60.556 56.522 0.00 0.00 0.00 3.20
1354 2459 0.107410 ACTGCAAAGACGGGTGAACA 60.107 50.000 0.00 0.00 0.00 3.18
1359 2464 0.249911 GTCTCACTGCAAAGACGGGT 60.250 55.000 7.55 0.00 33.21 5.28
1365 2470 1.230635 CCCCGTGTCTCACTGCAAAG 61.231 60.000 0.00 0.00 31.34 2.77
1379 2484 0.841289 TGAACTTCCAGTTTCCCCGT 59.159 50.000 0.00 0.00 38.80 5.28
1445 2550 3.262420 AGCATGGACGTCAGACATAAAC 58.738 45.455 18.91 5.22 0.00 2.01
1475 2580 9.948964 ATGCAGCATGATACTTACTAATGATAA 57.051 29.630 7.23 0.00 39.69 1.75
1482 2587 4.263025 CCCCATGCAGCATGATACTTACTA 60.263 45.833 33.17 0.00 43.81 1.82
1527 2632 4.839121 TCAGCAACCCTATTATGTTTCGT 58.161 39.130 0.00 0.00 0.00 3.85
1535 2640 5.437060 GTTCCATCTTCAGCAACCCTATTA 58.563 41.667 0.00 0.00 0.00 0.98
1537 2642 3.682718 CGTTCCATCTTCAGCAACCCTAT 60.683 47.826 0.00 0.00 0.00 2.57
1558 2663 0.107993 TCTTCAAGCCATCTCTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
1632 2737 5.345702 TCTACCAGAAAATCACGTAATCCG 58.654 41.667 0.00 0.00 44.03 4.18
1682 2787 5.798132 TGACTGAGATGACTTGTAGCAAAT 58.202 37.500 0.00 0.00 0.00 2.32
1734 2839 4.417437 ACTGAAGCTTGAGAACCCTACTA 58.583 43.478 20.38 0.00 0.00 1.82
1742 2847 8.682936 AAAGATAAAAGACTGAAGCTTGAGAA 57.317 30.769 20.38 0.00 0.00 2.87
1771 2876 3.699038 TGCCTTAAGTACCATTCCATTGC 59.301 43.478 0.97 0.00 0.00 3.56
1773 2878 6.630188 GCATTTGCCTTAAGTACCATTCCATT 60.630 38.462 0.97 0.00 34.31 3.16
2011 4366 9.360093 CAAATTTGAACTAAAACCACACAGTTA 57.640 29.630 13.08 0.00 31.57 2.24
2012 4367 7.333174 CCAAATTTGAACTAAAACCACACAGTT 59.667 33.333 19.86 0.00 34.03 3.16
2015 4370 6.814146 GTCCAAATTTGAACTAAAACCACACA 59.186 34.615 19.86 0.00 0.00 3.72
2016 4371 7.039270 AGTCCAAATTTGAACTAAAACCACAC 58.961 34.615 19.86 0.00 0.00 3.82
2017 4372 7.176589 AGTCCAAATTTGAACTAAAACCACA 57.823 32.000 19.86 0.00 0.00 4.17
2043 4449 4.754322 AGTGTCATGGTTTTGGTTCAAAC 58.246 39.130 0.00 0.00 32.79 2.93
2051 4484 6.423604 GTCCCAAAATAAGTGTCATGGTTTTG 59.576 38.462 0.00 0.00 36.70 2.44
2084 4517 8.662781 TTAGCCAAAGTATGCTCAGTTAATAG 57.337 34.615 0.00 0.00 39.00 1.73
2142 4579 9.463902 TGATTGGCCAAAAATCATTATTGAAAT 57.536 25.926 24.71 0.00 38.73 2.17
2247 4684 6.983890 GTCAACCTTTGTTAATGTTTCACCAT 59.016 34.615 0.00 0.00 32.09 3.55
2408 4845 9.057089 GGCTACATATAAGAGTGTTAGCAAATT 57.943 33.333 0.00 0.00 32.05 1.82
2409 4846 8.210946 TGGCTACATATAAGAGTGTTAGCAAAT 58.789 33.333 0.00 0.00 32.05 2.32
2515 4952 4.532834 AGAAGTGAGCAAACTAAAACCCA 58.467 39.130 0.00 0.00 0.00 4.51
2569 5585 2.168521 TCTTGATACTGCCCTCTTTCGG 59.831 50.000 0.00 0.00 0.00 4.30
2580 5596 4.142838 TGCGCATCTTTTGTCTTGATACTG 60.143 41.667 5.66 0.00 0.00 2.74
2642 5658 3.323243 TCTGCTGCTACCGTAACTTTTC 58.677 45.455 0.00 0.00 0.00 2.29
2718 5734 1.164041 GGTGTTGTGGCGCAGTTACT 61.164 55.000 10.83 0.00 0.00 2.24
2719 5735 1.281656 GGTGTTGTGGCGCAGTTAC 59.718 57.895 10.83 2.81 0.00 2.50
2720 5736 1.894756 GGGTGTTGTGGCGCAGTTA 60.895 57.895 10.83 0.00 0.00 2.24
2721 5737 3.216292 GGGTGTTGTGGCGCAGTT 61.216 61.111 10.83 0.00 0.00 3.16
2726 5742 3.124921 GATCCGGGTGTTGTGGCG 61.125 66.667 0.00 0.00 0.00 5.69
2768 5785 0.110644 CAGACTTTTTCGGCAGCGAC 60.111 55.000 0.00 0.00 0.00 5.19
2786 5803 1.135139 GAATGGCGACTCTGCTAGACA 59.865 52.381 0.00 0.00 34.52 3.41
2787 5804 1.537135 GGAATGGCGACTCTGCTAGAC 60.537 57.143 0.00 0.00 34.52 2.59
2837 5854 0.400213 TCACGGGCTTGATTTGGAGT 59.600 50.000 0.00 0.00 0.00 3.85
2862 5879 0.829182 GCCCCCAGCCTCCAAATATG 60.829 60.000 0.00 0.00 34.35 1.78
2878 5895 3.451894 CACCCCAAATCAGCGCCC 61.452 66.667 2.29 0.00 0.00 6.13
2888 5905 1.289982 TGTTTGGAGGACCACCCCAA 61.290 55.000 5.40 7.16 46.80 4.12
2897 5914 1.527380 GGCGGTTGTGTTTGGAGGA 60.527 57.895 0.00 0.00 0.00 3.71
3209 6226 3.134127 GCCATTGACAGGGCCGAC 61.134 66.667 8.61 0.00 44.53 4.79
3230 6247 1.953686 TCTTCCCGGTGAAAAAGCAAG 59.046 47.619 0.00 0.00 31.06 4.01
3231 6248 1.953686 CTCTTCCCGGTGAAAAAGCAA 59.046 47.619 0.00 0.00 31.06 3.91
3242 6259 4.821589 GAGTGGCGCTCTTCCCGG 62.822 72.222 20.43 0.00 40.98 5.73
3250 6267 1.765314 AGATTATGGAAGAGTGGCGCT 59.235 47.619 7.64 0.00 0.00 5.92
3277 6294 4.845580 CGGCGAAGGGCAGAGCAT 62.846 66.667 0.00 0.00 46.16 3.79
3295 6313 3.462021 GAAGATATGTGAGGAGTGGTGC 58.538 50.000 0.00 0.00 0.00 5.01
3334 6352 2.270874 GACATGGCCGATGGGAGGTT 62.271 60.000 16.39 0.00 36.23 3.50
3338 6356 2.745308 CCTGACATGGCCGATGGGA 61.745 63.158 16.39 4.86 36.23 4.37
3375 6393 2.204461 TCTCGCCGTGAAAGGTCCA 61.204 57.895 0.00 0.00 0.00 4.02
3385 6403 0.739561 GTCCTATTCAGTCTCGCCGT 59.260 55.000 0.00 0.00 0.00 5.68
3387 6405 0.030908 CGGTCCTATTCAGTCTCGCC 59.969 60.000 0.00 0.00 0.00 5.54
3395 6413 2.727392 CCCGGTGCGGTCCTATTCA 61.727 63.158 0.00 0.00 46.80 2.57
3396 6414 2.108362 CCCGGTGCGGTCCTATTC 59.892 66.667 0.00 0.00 46.80 1.75
3399 6417 3.588817 TTCTCCCGGTGCGGTCCTA 62.589 63.158 0.00 0.00 46.80 2.94
3410 6428 2.103263 CCTCTCCCATAACTTTCTCCCG 59.897 54.545 0.00 0.00 0.00 5.14
3416 6434 2.308866 CCACACCCTCTCCCATAACTTT 59.691 50.000 0.00 0.00 0.00 2.66
3435 6453 0.251209 ACTGACTCGGAGTAGTGCCA 60.251 55.000 11.27 3.52 0.00 4.92
3452 6470 2.034376 AGAGCGTCCACCTCGACT 59.966 61.111 0.00 0.00 34.56 4.18
3481 6499 0.033090 CTCTGCGCTGATGGCTGATA 59.967 55.000 17.78 0.00 37.65 2.15
3513 6531 3.712907 GGCAAGGTAGCGGTGGGA 61.713 66.667 0.00 0.00 34.64 4.37
3550 6568 2.437180 CATGAGCGCTTCCAGCCA 60.437 61.111 13.26 3.49 38.18 4.75
3611 6637 1.573829 CGGCTGCTTAAACTTCCGCA 61.574 55.000 0.00 0.00 0.00 5.69
3620 6646 0.108377 TCGATGCTTCGGCTGCTTAA 60.108 50.000 20.35 0.00 45.53 1.85
3621 6647 0.528466 CTCGATGCTTCGGCTGCTTA 60.528 55.000 20.35 0.21 45.53 3.09
3782 6808 8.249638 TCATCAAACAACAATGAAGAAGTTTCA 58.750 29.630 0.00 0.00 0.00 2.69
3858 6886 4.273318 ACATAGCCTCCAAAACATTCTCC 58.727 43.478 0.00 0.00 0.00 3.71
3865 6893 4.682787 GCCATAAACATAGCCTCCAAAAC 58.317 43.478 0.00 0.00 0.00 2.43
3871 6899 7.495934 ACATATAATCGCCATAAACATAGCCTC 59.504 37.037 0.00 0.00 0.00 4.70
3894 6979 1.081242 CGAGCCTTTGCGCAAACAT 60.081 52.632 30.63 18.86 44.33 2.71
3927 7012 4.576053 TGCATATGGAGCACACTTCATAAC 59.424 41.667 4.56 0.00 45.58 1.89
3933 7018 5.379187 TCATATTGCATATGGAGCACACTT 58.621 37.500 4.56 0.00 42.54 3.16
3964 7064 7.902087 ACAGAAAAGATAAGAGCAACTCTAGT 58.098 34.615 0.00 0.00 40.28 2.57
4052 7152 4.194678 TCGATATCCCTAAGGGTGTCTT 57.805 45.455 0.00 0.00 44.74 3.01
4296 7401 5.605534 CCAGTGACCTAACTCCTCATATTG 58.394 45.833 0.00 0.00 0.00 1.90
4343 7448 2.358247 AAAGGCCGCAGTACACCG 60.358 61.111 0.00 0.00 0.00 4.94
4373 7478 7.442969 TCGTTGTATTTTCTCTCTTTTTAGCCA 59.557 33.333 0.00 0.00 0.00 4.75
4424 7529 6.435292 ACCTACTGTGACCACTTAAGATTT 57.565 37.500 10.09 0.00 0.00 2.17
4496 7601 6.288294 TCTTGTGCAGACAACTTACTAATGT 58.712 36.000 0.00 0.00 37.15 2.71
4541 7646 2.159282 TCCAAAGCGACGATAGACCTTC 60.159 50.000 0.00 0.00 41.38 3.46
4582 7689 5.541845 TCTTCCAGTGTATCACAGAACAAG 58.458 41.667 2.80 0.00 36.74 3.16
4583 7690 5.545063 TCTTCCAGTGTATCACAGAACAA 57.455 39.130 2.80 0.00 36.74 2.83
4751 8725 9.698309 CACATATACTCCCTCTGTAACTAAATG 57.302 37.037 0.00 0.00 0.00 2.32
4762 8736 6.203072 ACCTAACAACACATATACTCCCTCT 58.797 40.000 0.00 0.00 0.00 3.69
4781 8755 9.918630 GTACTTTTACTAACATGTGAGACCTAA 57.081 33.333 17.67 2.63 0.00 2.69
4867 8881 5.768317 ACCAACAACCTTCATCAATAAACG 58.232 37.500 0.00 0.00 0.00 3.60
4966 8980 7.121315 GTGCCAAAATAAGAAGGTTAGATGAGT 59.879 37.037 0.00 0.00 0.00 3.41
4967 8981 7.337942 AGTGCCAAAATAAGAAGGTTAGATGAG 59.662 37.037 0.00 0.00 0.00 2.90
4969 8983 7.253422 CAGTGCCAAAATAAGAAGGTTAGATG 58.747 38.462 0.00 0.00 0.00 2.90
4970 8984 6.127619 GCAGTGCCAAAATAAGAAGGTTAGAT 60.128 38.462 2.85 0.00 0.00 1.98
5320 9460 2.080654 TCAAGGTTGAAAAGTGGGGG 57.919 50.000 0.00 0.00 33.55 5.40
5360 9500 6.039382 GGACAGTTTCAATAGTTCAAGGTTGT 59.961 38.462 0.00 0.00 0.00 3.32
5440 9580 1.035932 GGCATTGAGGCTGCATCTGT 61.036 55.000 15.78 1.14 41.47 3.41
5516 9656 9.601971 CGGATTAAAAACTTTCACGAAAAGATA 57.398 29.630 17.68 6.41 46.18 1.98
5517 9657 7.593644 CCGGATTAAAAACTTTCACGAAAAGAT 59.406 33.333 17.68 6.93 46.18 2.40
5518 9658 6.913673 CCGGATTAAAAACTTTCACGAAAAGA 59.086 34.615 17.68 0.00 46.18 2.52
5524 9664 5.092781 CCATCCGGATTAAAAACTTTCACG 58.907 41.667 16.19 0.00 0.00 4.35
5570 9710 1.601903 TGAACAAGCACTAAAGCCACG 59.398 47.619 0.00 0.00 34.23 4.94
5574 9714 3.568538 CACCATGAACAAGCACTAAAGC 58.431 45.455 0.00 0.00 0.00 3.51
5583 9723 2.352030 GCATGTCACCACCATGAACAAG 60.352 50.000 4.66 0.00 41.78 3.16
5645 9785 2.488153 CCCTTGGACGGTTTCAGAATTC 59.512 50.000 0.00 0.00 0.00 2.17
5860 10006 9.947433 TGGAATTTTGCTTCTTTATGAAATGAT 57.053 25.926 0.00 0.00 33.79 2.45
5881 10027 7.499232 GCTGGAATATACACAAGTTACTGGAAT 59.501 37.037 0.00 0.00 0.00 3.01
5882 10028 6.821665 GCTGGAATATACACAAGTTACTGGAA 59.178 38.462 0.00 0.00 0.00 3.53
5883 10029 6.070481 TGCTGGAATATACACAAGTTACTGGA 60.070 38.462 0.00 0.00 0.00 3.86
5884 10030 6.112734 TGCTGGAATATACACAAGTTACTGG 58.887 40.000 0.00 0.00 0.00 4.00
5885 10031 7.414098 GGTTGCTGGAATATACACAAGTTACTG 60.414 40.741 0.00 0.00 0.00 2.74
5886 10032 6.598064 GGTTGCTGGAATATACACAAGTTACT 59.402 38.462 0.00 0.00 0.00 2.24
5887 10033 6.598064 AGGTTGCTGGAATATACACAAGTTAC 59.402 38.462 0.00 0.00 0.00 2.50
5888 10034 6.597672 CAGGTTGCTGGAATATACACAAGTTA 59.402 38.462 0.00 0.00 0.00 2.24
5889 10035 5.415701 CAGGTTGCTGGAATATACACAAGTT 59.584 40.000 0.00 0.00 0.00 2.66
5890 10036 4.943705 CAGGTTGCTGGAATATACACAAGT 59.056 41.667 0.00 0.00 0.00 3.16
5891 10037 4.943705 ACAGGTTGCTGGAATATACACAAG 59.056 41.667 0.00 0.00 0.00 3.16
5892 10038 4.699735 CACAGGTTGCTGGAATATACACAA 59.300 41.667 0.00 0.00 0.00 3.33
5893 10039 4.260985 CACAGGTTGCTGGAATATACACA 58.739 43.478 0.00 0.00 0.00 3.72
5894 10040 4.261801 ACACAGGTTGCTGGAATATACAC 58.738 43.478 0.00 0.00 0.00 2.90
5895 10041 4.568072 ACACAGGTTGCTGGAATATACA 57.432 40.909 0.00 0.00 0.00 2.29
5896 10042 8.848474 AATATACACAGGTTGCTGGAATATAC 57.152 34.615 0.00 0.00 0.00 1.47
5897 10043 8.655901 TGAATATACACAGGTTGCTGGAATATA 58.344 33.333 0.00 0.00 0.00 0.86
5898 10044 7.517320 TGAATATACACAGGTTGCTGGAATAT 58.483 34.615 0.00 0.00 0.00 1.28
5899 10045 6.894682 TGAATATACACAGGTTGCTGGAATA 58.105 36.000 0.00 0.00 0.00 1.75
5939 10085 2.289694 CCTGAACAGTACCTTCTGTGGG 60.290 54.545 0.10 1.13 46.25 4.61
5964 10110 5.048434 GCCCCACTTAGATGAATTCAATAGC 60.048 44.000 13.09 2.75 0.00 2.97
6078 10224 4.288626 AGACCCTTGCTGGTTAAGATGTAA 59.711 41.667 0.00 0.00 39.24 2.41
6200 10347 7.370383 TGCCAAAATCATAGTTCTTGAACTTC 58.630 34.615 19.28 0.00 34.37 3.01
6509 10658 8.692710 ACAAGTTAATACTCTTACGATGGATGA 58.307 33.333 0.00 0.00 31.99 2.92
6585 10734 1.974265 TTCCCACGAAACAGCATCAA 58.026 45.000 0.00 0.00 0.00 2.57
6663 10812 8.646004 TGGAAATGACAATTTGATAAGAAACCA 58.354 29.630 2.79 0.00 36.10 3.67
6813 10967 8.565896 AAGTAGAGTTGAATCATGTTTATGCA 57.434 30.769 0.00 0.00 34.21 3.96
6814 10968 8.668353 TGAAGTAGAGTTGAATCATGTTTATGC 58.332 33.333 0.00 0.00 34.21 3.14
6833 10988 4.096984 GGTCCAAAATGCAGGATGAAGTAG 59.903 45.833 0.00 0.00 39.69 2.57
6881 11036 6.535540 ACTGTAACCACCAAACACATGTATA 58.464 36.000 0.00 0.00 0.00 1.47
6917 11072 6.826741 AGGATGTAACAGCGGTACAATATTTT 59.173 34.615 9.83 0.00 0.00 1.82
6936 11091 1.980765 TCTTGGCTGAGTCAAGGATGT 59.019 47.619 24.82 0.00 44.33 3.06
7056 11211 5.146010 TGTGAAGTTTGAAGCCAAAAACT 57.854 34.783 3.17 3.17 46.03 2.66
7083 11238 5.547465 TCACTGGTAAAAGTTCGTCATGAT 58.453 37.500 0.00 0.00 0.00 2.45
7106 11261 5.704053 ACACTAGGTAAAAACAAATAGCGCT 59.296 36.000 17.26 17.26 0.00 5.92
7243 11398 6.465084 AGTGAGGAAACCTAGATTACACAAC 58.535 40.000 0.00 0.00 31.76 3.32
7316 11471 6.071896 GGTGTGATCTAGATGTATCCGATTCA 60.072 42.308 10.74 0.00 0.00 2.57
7372 11527 9.399403 GAGAACAAACAACTCCAGAAAATAATC 57.601 33.333 0.00 0.00 0.00 1.75
7389 11544 3.821748 AGACCAAAGGAGGAGAACAAAC 58.178 45.455 0.00 0.00 0.00 2.93
7413 11568 6.831046 GTGCCTTACTAGACGACAAGGTACT 61.831 48.000 12.67 0.00 45.13 2.73
7414 11569 3.441572 TGCCTTACTAGACGACAAGGTAC 59.558 47.826 0.00 0.00 39.82 3.34
7421 11576 3.844577 TGAAGTGCCTTACTAGACGAC 57.155 47.619 0.00 0.00 39.18 4.34
7464 11761 3.909662 CCTTGGGAGGCAATGTCG 58.090 61.111 0.00 0.00 35.94 4.35
7478 11775 9.077885 CTTGCATATACCATATACCAAAACCTT 57.922 33.333 0.00 0.00 0.00 3.50
7498 11795 5.779529 ACATGAAAACTCTGAACTTGCAT 57.220 34.783 0.00 0.00 0.00 3.96
7499 11796 5.581126 AACATGAAAACTCTGAACTTGCA 57.419 34.783 0.00 0.00 0.00 4.08
7516 11813 8.499162 GTTAAGCTCCAGCAATATACTAACATG 58.501 37.037 0.48 0.00 45.16 3.21
7593 11890 7.189512 GGAGTACATTGTATTTCTGCACATTC 58.810 38.462 0.00 0.00 0.00 2.67
7604 11901 5.011738 CGTATGGGAGGGAGTACATTGTATT 59.988 44.000 0.00 0.00 0.00 1.89
7606 11903 3.893200 CGTATGGGAGGGAGTACATTGTA 59.107 47.826 0.00 0.00 0.00 2.41
7623 11920 1.325355 ACGGGTCCCTGATACGTATG 58.675 55.000 13.97 0.00 35.85 2.39
7624 11921 2.957402 TACGGGTCCCTGATACGTAT 57.043 50.000 8.05 8.05 38.79 3.06
7626 11923 1.325355 CATACGGGTCCCTGATACGT 58.675 55.000 6.29 0.00 41.10 3.57
7627 11924 1.325355 ACATACGGGTCCCTGATACG 58.675 55.000 6.29 0.00 0.00 3.06
7629 11926 2.815215 CGGTACATACGGGTCCCTGATA 60.815 54.545 6.29 0.00 0.00 2.15
7631 11928 0.752743 CGGTACATACGGGTCCCTGA 60.753 60.000 6.29 0.00 0.00 3.86
7640 11937 2.149578 CTACTCCCTCCGGTACATACG 58.850 57.143 0.00 0.00 0.00 3.06
7641 11938 3.220674 ACTACTCCCTCCGGTACATAC 57.779 52.381 0.00 0.00 0.00 2.39
7642 11939 3.461085 AGAACTACTCCCTCCGGTACATA 59.539 47.826 0.00 0.00 0.00 2.29
7644 11941 1.637553 AGAACTACTCCCTCCGGTACA 59.362 52.381 0.00 0.00 0.00 2.90
7645 11942 2.433662 AGAACTACTCCCTCCGGTAC 57.566 55.000 0.00 0.00 0.00 3.34
7646 11943 3.011032 AGAAAGAACTACTCCCTCCGGTA 59.989 47.826 0.00 0.00 0.00 4.02
7648 11945 2.427812 GAGAAAGAACTACTCCCTCCGG 59.572 54.545 0.00 0.00 0.00 5.14
7649 11946 2.427812 GGAGAAAGAACTACTCCCTCCG 59.572 54.545 13.08 0.00 42.84 4.63
7655 11952 7.324178 TCTATTTGCAGGAGAAAGAACTACTC 58.676 38.462 0.00 0.00 0.00 2.59
7687 12032 7.121611 CGTAAAATCCCCTACAGTACCATTTTT 59.878 37.037 0.00 0.00 0.00 1.94
7731 12077 3.009143 AGGCACGTCTCTTCCCTATTTTT 59.991 43.478 0.00 0.00 0.00 1.94
7733 12079 2.093447 CAGGCACGTCTCTTCCCTATTT 60.093 50.000 0.00 0.00 0.00 1.40
7741 12091 1.609061 CCAACATCAGGCACGTCTCTT 60.609 52.381 0.00 0.00 0.00 2.85
7746 12096 0.324614 TGATCCAACATCAGGCACGT 59.675 50.000 0.00 0.00 0.00 4.49
7825 12183 6.053650 GGGTTTTAGTATGACAGTGATACCC 58.946 44.000 6.55 0.00 32.58 3.69
7923 12281 2.068181 ACCCATGGCATGATGGATAGT 58.932 47.619 28.43 10.53 45.24 2.12
7942 12300 1.265095 CATCGCCATGCTTATCCACAC 59.735 52.381 0.00 0.00 0.00 3.82
7974 12342 4.042060 CGTGTTCGTCGTGGTGCG 62.042 66.667 0.00 0.00 43.01 5.34
8005 12373 3.265791 GTTGAGAATTGAGGCGTCATCT 58.734 45.455 10.35 10.91 30.85 2.90
8007 12375 3.057969 TGTTGAGAATTGAGGCGTCAT 57.942 42.857 10.35 0.00 30.85 3.06
8041 12409 4.142988 GCCTGAATCATCGAACAACGTAAA 60.143 41.667 0.00 0.00 43.13 2.01
8045 12413 2.002586 AGCCTGAATCATCGAACAACG 58.997 47.619 0.00 0.00 44.09 4.10
8046 12414 3.002791 TCAGCCTGAATCATCGAACAAC 58.997 45.455 0.00 0.00 0.00 3.32
8047 12415 3.333029 TCAGCCTGAATCATCGAACAA 57.667 42.857 0.00 0.00 0.00 2.83
8048 12416 3.002791 GTTCAGCCTGAATCATCGAACA 58.997 45.455 10.87 0.00 38.79 3.18
8049 12417 3.002791 TGTTCAGCCTGAATCATCGAAC 58.997 45.455 10.87 0.00 38.79 3.95
8050 12418 3.333029 TGTTCAGCCTGAATCATCGAA 57.667 42.857 10.87 0.00 38.79 3.71
8051 12419 3.200483 CATGTTCAGCCTGAATCATCGA 58.800 45.455 10.87 0.00 38.79 3.59
8052 12420 2.941064 ACATGTTCAGCCTGAATCATCG 59.059 45.455 10.87 11.82 38.79 3.84
8053 12421 3.943381 TCACATGTTCAGCCTGAATCATC 59.057 43.478 10.87 0.00 38.79 2.92
8054 12422 3.945921 CTCACATGTTCAGCCTGAATCAT 59.054 43.478 10.87 12.42 38.79 2.45
8055 12423 3.244665 ACTCACATGTTCAGCCTGAATCA 60.245 43.478 10.87 10.73 38.79 2.57
8056 12424 3.341823 ACTCACATGTTCAGCCTGAATC 58.658 45.455 10.87 5.37 38.79 2.52
8057 12425 3.430042 ACTCACATGTTCAGCCTGAAT 57.570 42.857 10.87 0.00 38.79 2.57
8058 12426 2.880268 CAACTCACATGTTCAGCCTGAA 59.120 45.455 2.24 2.24 33.32 3.02
8059 12427 2.104622 TCAACTCACATGTTCAGCCTGA 59.895 45.455 0.00 0.00 0.00 3.86
8060 12428 2.497138 TCAACTCACATGTTCAGCCTG 58.503 47.619 0.00 0.00 0.00 4.85
8061 12429 2.936919 TCAACTCACATGTTCAGCCT 57.063 45.000 0.00 0.00 0.00 4.58
8062 12430 2.163010 CCATCAACTCACATGTTCAGCC 59.837 50.000 0.00 0.00 0.00 4.85
8063 12431 3.076621 TCCATCAACTCACATGTTCAGC 58.923 45.455 0.00 0.00 0.00 4.26
8064 12432 5.892160 ATTCCATCAACTCACATGTTCAG 57.108 39.130 0.00 0.00 0.00 3.02
8065 12433 7.943079 AATATTCCATCAACTCACATGTTCA 57.057 32.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.