AutoCloner

Multiple sequence alignment - TraesCS1B01G228600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G228600	chr1B	100.000	3110	0	0	1	3110	409839360	409836251	0.000000e+00	5744.0
1	TraesCS1B01G228600	chr1B	94.709	756	38	2	1	755	553895795	553896549	0.000000e+00	1173.0
2	TraesCS1B01G228600	chr1B	98.413	63	1	0	1994	2056	626422365	626422427	9.120000e-21	111.0
3	TraesCS1B01G228600	chr1B	97.368	38	0	1	1951	1988	626422335	626422371	2.590000e-06	63.9
4	TraesCS1B01G228600	chr1A	91.583	2388	76	49	751	3062	380264333	380261995	0.000000e+00	3181.0
5	TraesCS1B01G228600	chr1D	94.616	1653	41	15	751	2367	302927223	302925583	0.000000e+00	2516.0
6	TraesCS1B01G228600	chr1D	91.026	702	36	13	2377	3062	302925536	302924846	0.000000e+00	922.0
7	TraesCS1B01G228600	chr6B	96.941	752	20	3	7	756	161355273	161354523	0.000000e+00	1258.0
8	TraesCS1B01G228600	chr4B	95.750	753	30	2	1	751	630048406	630049158	0.000000e+00	1212.0
9	TraesCS1B01G228600	chr3B	95.358	754	33	2	1	752	760584101	760583348	0.000000e+00	1197.0
10	TraesCS1B01G228600	chr3B	94.960	754	35	3	1	751	782302629	782303382	0.000000e+00	1179.0
11	TraesCS1B01G228600	chr3B	94.828	754	36	3	1	751	782260815	782261568	0.000000e+00	1173.0
12	TraesCS1B01G228600	chr3B	94.695	754	37	3	1	751	782219408	782220161	0.000000e+00	1168.0
13	TraesCS1B01G228600	chr3B	94.562	754	38	3	1	751	782177726	782178479	0.000000e+00	1162.0
14	TraesCS1B01G228600	chr3B	96.226	106	3	1	1951	2056	23381753	23381649	4.120000e-39	172.0
15	TraesCS1B01G228600	chr4A	95.053	748	35	2	6	751	714898906	714898159	0.000000e+00	1175.0
16	TraesCS1B01G228600	chr3D	93.805	565	21	5	869	1430	231173062	231172509	0.000000e+00	837.0
17	TraesCS1B01G228600	chr3D	91.914	606	20	2	1574	2179	231171949	231172525	0.000000e+00	821.0
18	TraesCS1B01G228600	chr3D	93.778	225	14	0	1406	1630	231171734	231171958	3.840000e-89	339.0
19	TraesCS1B01G228600	chr7D	89.512	553	40	10	1039	1576	501383156	501383705	0.000000e+00	684.0
20	TraesCS1B01G228600	chr7D	89.029	556	37	10	1039	1579	501384400	501384946	0.000000e+00	667.0
21	TraesCS1B01G228600	chr5B	91.266	458	25	9	2544	2994	169509006	169509455	7.370000e-171	610.0
22	TraesCS1B01G228600	chr7A	89.349	169	17	1	1386	1554	562904040	562904207	8.740000e-51	211.0
23	TraesCS1B01G228600	chr7A	88.462	78	8	1	2986	3063	43352842	43352766	3.300000e-15	93.5
24	TraesCS1B01G228600	chr7A	88.462	78	8	1	2986	3063	43386352	43386276	3.300000e-15	93.5
25	TraesCS1B01G228600	chr7B	95.098	102	4	1	1951	2052	643391571	643391671	3.210000e-35	159.0
26	TraesCS1B01G228600	chr6A	92.308	78	5	1	2986	3063	52023144	52023068	3.280000e-20	110.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G228600	chr1B	409836251	409839360	3109	True	5744.0	5744	100.0000	1	3110	1	chr1B.!!$R1	3109
1	TraesCS1B01G228600	chr1B	553895795	553896549	754	False	1173.0	1173	94.7090	1	755	1	chr1B.!!$F1	754
2	TraesCS1B01G228600	chr1A	380261995	380264333	2338	True	3181.0	3181	91.5830	751	3062	1	chr1A.!!$R1	2311
3	TraesCS1B01G228600	chr1D	302924846	302927223	2377	True	1719.0	2516	92.8210	751	3062	2	chr1D.!!$R1	2311
4	TraesCS1B01G228600	chr6B	161354523	161355273	750	True	1258.0	1258	96.9410	7	756	1	chr6B.!!$R1	749
5	TraesCS1B01G228600	chr4B	630048406	630049158	752	False	1212.0	1212	95.7500	1	751	1	chr4B.!!$F1	750
6	TraesCS1B01G228600	chr3B	760583348	760584101	753	True	1197.0	1197	95.3580	1	752	1	chr3B.!!$R2	751
7	TraesCS1B01G228600	chr3B	782302629	782303382	753	False	1179.0	1179	94.9600	1	751	1	chr3B.!!$F4	750
8	TraesCS1B01G228600	chr3B	782260815	782261568	753	False	1173.0	1173	94.8280	1	751	1	chr3B.!!$F3	750
9	TraesCS1B01G228600	chr3B	782219408	782220161	753	False	1168.0	1168	94.6950	1	751	1	chr3B.!!$F2	750
10	TraesCS1B01G228600	chr3B	782177726	782178479	753	False	1162.0	1162	94.5620	1	751	1	chr3B.!!$F1	750
11	TraesCS1B01G228600	chr4A	714898159	714898906	747	True	1175.0	1175	95.0530	6	751	1	chr4A.!!$R1	745
12	TraesCS1B01G228600	chr3D	231172509	231173062	553	True	837.0	837	93.8050	869	1430	1	chr3D.!!$R1	561
13	TraesCS1B01G228600	chr3D	231171734	231172525	791	False	580.0	821	92.8460	1406	2179	2	chr3D.!!$F1	773
14	TraesCS1B01G228600	chr7D	501383156	501384946	1790	False	675.5	684	89.2705	1039	1579	2	chr7D.!!$F1	540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
210	211	1.001520	TCTTTCTCGATTGCCCGTTGA	59.998	47.619	0.00	0.00	0.00	3.18	F
731	734	1.147153	GATGCAGAGGCTGGGTACC	59.853	63.158	2.17	2.17	44.71	3.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1194	1225	2.037772	GCGGATGAAGTAGTGGATGGAT	59.962	50.000	0.0	0.0	0.0	3.41	R
2596	3991	1.154357	CGCTACGACGCACACAGTA	60.154	57.895	0.0	0.0	0.0	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
147	148	1.376683	CGAAATTGGGTGGGCTCGA	60.377	57.895	0.00	0.00	0.00	4.04
210	211	1.001520	TCTTTCTCGATTGCCCGTTGA	59.998	47.619	0.00	0.00	0.00	3.18
232	233	3.195698	GATTCTGTGGCGGTCGGC	61.196	66.667	10.01	10.01	42.51	5.54
354	355	2.544903	GGCGTTTGTGCTTTATTGTGGT	60.545	45.455	0.00	0.00	34.52	4.16
495	496	1.276989	CCAGGGAGCGTTTGGTTACTA	59.723	52.381	0.00	0.00	0.00	1.82
534	535	3.380479	TGGTAGCTCGGGATATTTTCG	57.620	47.619	0.00	0.00	0.00	3.46
659	661	8.089597	TGTTTATGATTGTACTACGACCTTTCA	58.910	33.333	0.00	0.00	0.00	2.69
731	734	1.147153	GATGCAGAGGCTGGGTACC	59.853	63.158	2.17	2.17	44.71	3.34
962	968	3.011517	AGCCCAACCCGAGAGCAT	61.012	61.111	0.00	0.00	0.00	3.79
1010	1026	4.262808	GGGAGATTGATCGATGTCTTCCAT	60.263	45.833	17.30	0.00	36.54	3.41
1095	1120	2.693017	GCTGAGGGAGGAGGAGGA	59.307	66.667	0.00	0.00	0.00	3.71
1096	1121	1.457455	GCTGAGGGAGGAGGAGGAG	60.457	68.421	0.00	0.00	0.00	3.69
1097	1122	1.232792	CTGAGGGAGGAGGAGGAGG	59.767	68.421	0.00	0.00	0.00	4.30
1103	1128	1.392534	GAGGAGGAGGAGGTGGGAA	59.607	63.158	0.00	0.00	0.00	3.97
1194	1225	3.569916	GATGCTTCTGGCGTCGATA	57.430	52.632	0.00	0.00	45.42	2.92
1334	1380	1.612442	CCGACCAAGGGAAGGAGGA	60.612	63.158	0.00	0.00	32.18	3.71
1536	2820	4.796231	CTCCGCTCCAACCCGTCG	62.796	72.222	0.00	0.00	0.00	5.12
1641	2972	4.813526	CGCTCCACGTCGTCCTCG	62.814	72.222	0.00	0.00	36.87	4.63
1728	3059	1.612463	ACCAACACAGAGTACCTCGTC	59.388	52.381	0.00	0.00	35.36	4.20
2217	3552	4.635765	GCATGCAGTGTAATCTCCAAACTA	59.364	41.667	14.21	0.00	0.00	2.24
2355	3704	2.240162	GAGAATGTCGGCGGGAAGGT	62.240	60.000	7.21	0.00	0.00	3.50
2449	3837	7.786464	AGCTAGTTCTACTCCTACTCTAGTACT	59.214	40.741	0.00	0.00	0.00	2.73
2450	3838	9.077885	GCTAGTTCTACTCCTACTCTAGTACTA	57.922	40.741	1.89	1.89	0.00	1.82
2455	3843	8.615878	TCTACTCCTACTCTAGTACTACTACG	57.384	42.308	0.00	0.00	0.00	3.51
2456	3844	8.215050	TCTACTCCTACTCTAGTACTACTACGT	58.785	40.741	0.00	0.00	0.00	3.57
2457	3845	9.496873	CTACTCCTACTCTAGTACTACTACGTA	57.503	40.741	0.00	0.00	0.00	3.57
2465	3853	8.081633	ACTCTAGTACTACTACGTATACTGCAG	58.918	40.741	13.48	13.48	0.00	4.41
2477	3865	5.163854	ACGTATACTGCAGTTTGATTTGAGC	60.164	40.000	27.06	0.84	0.00	4.26
2494	3887	3.082548	TGAGCTGTACTACTGGTCAGTC	58.917	50.000	18.72	0.00	45.23	3.51
2535	3928	1.153524	ACTGTGGATTGCAAGGCCA	59.846	52.632	17.23	17.23	0.00	5.36
2596	3991	2.110835	TGTGTGCCACAGTGCGAT	59.889	55.556	0.00	0.00	39.62	4.58
2617	4012	4.117372	GTGTGCGTCGTAGCGTGC	62.117	66.667	0.00	0.00	40.67	5.34
2655	4053	2.179764	GCGGTATGCTTTGAGGCAA	58.820	52.632	0.00	0.00	45.68	4.52
2657	4055	1.737838	CGGTATGCTTTGAGGCAAGA	58.262	50.000	0.00	0.00	45.68	3.02
2660	4058	2.819608	GGTATGCTTTGAGGCAAGACAA	59.180	45.455	0.00	0.00	45.68	3.18
2687	4085	5.835113	AGAAAGCATTTGTTGTGTGTAGT	57.165	34.783	0.00	0.00	39.27	2.73
2720	4119	2.173782	ACATGGAGGTGTGGTGTTGTTA	59.826	45.455	0.00	0.00	0.00	2.41
2753	4152	2.107031	CAGATTCCTGGTCCATGCCATA	59.893	50.000	0.00	0.00	37.96	2.74
2848	4258	5.871396	TGGACAAGTAATCATCTCCTACC	57.129	43.478	0.00	0.00	0.00	3.18
2856	4266	9.029368	CAAGTAATCATCTCCTACCATCATCTA	57.971	37.037	0.00	0.00	0.00	1.98
2858	4268	6.865834	AATCATCTCCTACCATCATCTACC	57.134	41.667	0.00	0.00	0.00	3.18
2922	4332	7.492020	TCAAAGTGATCATTTTTGTTGAACCAG	59.508	33.333	23.61	8.73	34.35	4.00
2923	4333	6.469782	AGTGATCATTTTTGTTGAACCAGT	57.530	33.333	0.00	0.00	0.00	4.00
2924	4334	6.275335	AGTGATCATTTTTGTTGAACCAGTG	58.725	36.000	0.00	0.00	0.00	3.66
2925	4335	6.042143	GTGATCATTTTTGTTGAACCAGTGT	58.958	36.000	0.00	0.00	0.00	3.55
2926	4336	7.068103	AGTGATCATTTTTGTTGAACCAGTGTA	59.932	33.333	0.00	0.00	0.00	2.90
3062	4475	4.040952	CCTTGTCTTTCTTCTTCCTCCTCA	59.959	45.833	0.00	0.00	0.00	3.86
3063	4476	5.455326	CCTTGTCTTTCTTCTTCCTCCTCAA	60.455	44.000	0.00	0.00	0.00	3.02
3064	4477	5.832539	TGTCTTTCTTCTTCCTCCTCAAT	57.167	39.130	0.00	0.00	0.00	2.57
3065	4478	6.192970	TGTCTTTCTTCTTCCTCCTCAATT	57.807	37.500	0.00	0.00	0.00	2.32
3066	4479	6.234177	TGTCTTTCTTCTTCCTCCTCAATTC	58.766	40.000	0.00	0.00	0.00	2.17
3067	4480	5.645929	GTCTTTCTTCTTCCTCCTCAATTCC	59.354	44.000	0.00	0.00	0.00	3.01
3068	4481	5.549619	TCTTTCTTCTTCCTCCTCAATTCCT	59.450	40.000	0.00	0.00	0.00	3.36
3069	4482	5.428184	TTCTTCTTCCTCCTCAATTCCTC	57.572	43.478	0.00	0.00	0.00	3.71
3070	4483	4.429505	TCTTCTTCCTCCTCAATTCCTCA	58.570	43.478	0.00	0.00	0.00	3.86
3071	4484	5.035556	TCTTCTTCCTCCTCAATTCCTCAT	58.964	41.667	0.00	0.00	0.00	2.90
3072	4485	4.767578	TCTTCCTCCTCAATTCCTCATG	57.232	45.455	0.00	0.00	0.00	3.07
3073	4486	3.118112	TCTTCCTCCTCAATTCCTCATGC	60.118	47.826	0.00	0.00	0.00	4.06
3074	4487	2.485659	TCCTCCTCAATTCCTCATGCT	58.514	47.619	0.00	0.00	0.00	3.79
3075	4488	2.172082	TCCTCCTCAATTCCTCATGCTG	59.828	50.000	0.00	0.00	0.00	4.41
3076	4489	2.092538	CCTCCTCAATTCCTCATGCTGT	60.093	50.000	0.00	0.00	0.00	4.40
3077	4490	3.135348	CCTCCTCAATTCCTCATGCTGTA	59.865	47.826	0.00	0.00	0.00	2.74
3078	4491	4.202440	CCTCCTCAATTCCTCATGCTGTAT	60.202	45.833	0.00	0.00	0.00	2.29
3079	4492	4.711399	TCCTCAATTCCTCATGCTGTATG	58.289	43.478	0.00	0.00	38.17	2.39
3080	4493	4.164796	TCCTCAATTCCTCATGCTGTATGT	59.835	41.667	5.64	0.00	38.01	2.29
3081	4494	5.366477	TCCTCAATTCCTCATGCTGTATGTA	59.634	40.000	5.64	0.00	38.01	2.29
3082	4495	5.468072	CCTCAATTCCTCATGCTGTATGTAC	59.532	44.000	5.64	0.00	38.01	2.90
3083	4496	5.988287	TCAATTCCTCATGCTGTATGTACA	58.012	37.500	0.00	0.00	38.01	2.90
3094	4507	4.187594	CTGTATGTACAGCAGCGATTTG	57.812	45.455	14.62	0.00	46.03	2.32
3095	4508	3.595173	TGTATGTACAGCAGCGATTTGT	58.405	40.909	0.33	0.00	0.00	2.83
3096	4509	4.000325	TGTATGTACAGCAGCGATTTGTT	59.000	39.130	0.33	0.00	0.00	2.83
3097	4510	4.454161	TGTATGTACAGCAGCGATTTGTTT	59.546	37.500	0.33	0.00	0.00	2.83
3098	4511	3.266541	TGTACAGCAGCGATTTGTTTG	57.733	42.857	0.00	0.00	0.00	2.93
3099	4512	1.978782	GTACAGCAGCGATTTGTTTGC	59.021	47.619	0.00	0.00	36.83	3.68
3100	4513	0.385029	ACAGCAGCGATTTGTTTGCA	59.615	45.000	0.00	0.00	38.97	4.08
3101	4514	0.780002	CAGCAGCGATTTGTTTGCAC	59.220	50.000	0.00	0.00	38.97	4.57
3102	4515	0.670162	AGCAGCGATTTGTTTGCACT	59.330	45.000	0.00	0.00	38.97	4.40
3103	4516	0.780002	GCAGCGATTTGTTTGCACTG	59.220	50.000	0.00	0.00	37.17	3.66
3104	4517	1.600164	GCAGCGATTTGTTTGCACTGA	60.600	47.619	0.00	0.00	37.17	3.41
3105	4518	2.730069	CAGCGATTTGTTTGCACTGAA	58.270	42.857	0.00	0.00	37.17	3.02
3106	4519	2.722629	CAGCGATTTGTTTGCACTGAAG	59.277	45.455	0.00	0.00	37.17	3.02
3107	4520	2.618241	AGCGATTTGTTTGCACTGAAGA	59.382	40.909	0.00	0.00	37.17	2.87
3108	4521	2.721090	GCGATTTGTTTGCACTGAAGAC	59.279	45.455	0.00	0.00	34.56	3.01
3109	4522	3.548818	GCGATTTGTTTGCACTGAAGACT	60.549	43.478	0.00	0.00	34.56	3.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	3.060602	GGGATGACGCTAGAGTTAATGC	58.939	50.000	0.00	3.66	0.00	3.56
147	148	9.319143	GTTATGATCACAAAAGCTACATCTAGT	57.681	33.333	0.00	0.00	0.00	2.57
210	211	1.135083	CGACCGCCACAGAATCTTAGT	60.135	52.381	0.00	0.00	0.00	2.24
354	355	7.649533	AATCATTTCTGCAGTTCCATATTGA	57.350	32.000	14.67	7.33	0.00	2.57
389	390	6.922957	GCAAAAAGTGAATGGTTGTTGATCTA	59.077	34.615	0.00	0.00	0.00	1.98
495	496	0.185416	ATCTCCCATCGGGTAGACGT	59.815	55.000	0.00	0.00	44.74	4.34
534	535	3.884900	CCGTCATCCAAACCGGTC	58.115	61.111	8.04	0.00	35.78	4.79
659	661	9.588096	AATAGGAAATTCCAGTAACAAAGTCTT	57.412	29.630	15.21	0.00	39.61	3.01
697	699	6.000246	TCTGCATCCCAAAGATACATACAA	58.000	37.500	0.00	0.00	32.37	2.41
698	700	5.455183	CCTCTGCATCCCAAAGATACATACA	60.455	44.000	0.00	0.00	32.37	2.29
704	706	2.130193	AGCCTCTGCATCCCAAAGATA	58.870	47.619	0.00	0.00	41.13	1.98
711	713	2.072487	TACCCAGCCTCTGCATCCC	61.072	63.158	0.00	0.00	41.13	3.85
781	787	6.118852	TGTGCAAGGCTACAATCATAATGTA	58.881	36.000	0.00	0.00	32.27	2.29
962	968	1.286257	TCCTCTCTCCTTGCTCTGCTA	59.714	52.381	0.00	0.00	0.00	3.49
1095	1120	3.918328	ATCGTCCCCGTTCCCACCT	62.918	63.158	0.00	0.00	35.01	4.00
1096	1121	3.396570	ATCGTCCCCGTTCCCACC	61.397	66.667	0.00	0.00	35.01	4.61
1097	1122	2.125269	CATCGTCCCCGTTCCCAC	60.125	66.667	0.00	0.00	35.01	4.61
1146	1177	4.397103	ACGATTACGGCGATGATAAGGATA	59.603	41.667	16.62	0.00	44.46	2.59
1194	1225	2.037772	GCGGATGAAGTAGTGGATGGAT	59.962	50.000	0.00	0.00	0.00	3.41
1341	1387	3.206211	GATGAGCCGCTCCCTCTCG	62.206	68.421	17.81	0.00	0.00	4.04
1686	3017	2.070650	GGAGTTGGGGAGCGGGTAT	61.071	63.158	0.00	0.00	0.00	2.73
2217	3552	1.493446	GAATCCATCCGGTTTAGGGGT	59.507	52.381	0.00	0.00	0.00	4.95
2355	3704	1.812571	GCCTCAAAGCGAATTCCTCAA	59.187	47.619	0.00	0.00	0.00	3.02
2430	3818	8.215050	ACGTAGTAGTACTAGAGTAGGAGTAGA	58.785	40.741	10.38	0.00	41.94	2.59
2451	3839	7.520119	TCAAATCAAACTGCAGTATACGTAG	57.480	36.000	22.01	8.95	0.00	3.51
2452	3840	6.035650	GCTCAAATCAAACTGCAGTATACGTA	59.964	38.462	22.01	0.00	0.00	3.57
2453	3841	5.163854	GCTCAAATCAAACTGCAGTATACGT	60.164	40.000	22.01	0.00	0.00	3.57
2454	3842	5.063944	AGCTCAAATCAAACTGCAGTATACG	59.936	40.000	22.01	9.03	0.00	3.06
2455	3843	6.128172	ACAGCTCAAATCAAACTGCAGTATAC	60.128	38.462	22.01	0.00	31.46	1.47
2456	3844	5.939883	ACAGCTCAAATCAAACTGCAGTATA	59.060	36.000	22.01	9.04	31.46	1.47
2457	3845	4.763793	ACAGCTCAAATCAAACTGCAGTAT	59.236	37.500	22.01	7.36	31.46	2.12
2465	3853	5.701290	ACCAGTAGTACAGCTCAAATCAAAC	59.299	40.000	2.52	0.00	0.00	2.93
2477	3865	6.761099	ATTACAGACTGACCAGTAGTACAG	57.239	41.667	10.08	0.00	42.66	2.74
2494	3887	7.543172	CAGTGACCAATGGAATGAAAATTACAG	59.457	37.037	6.16	0.00	0.00	2.74
2535	3928	3.007290	TCTCTTTATCACTGCACTGCACT	59.993	43.478	0.00	0.00	33.79	4.40
2596	3991	1.154357	CGCTACGACGCACACAGTA	60.154	57.895	0.00	0.00	0.00	2.74
2617	4012	2.168728	GCTGTCCCCTAGTTTCCTGTAG	59.831	54.545	0.00	0.00	0.00	2.74
2655	4053	5.014808	ACAAATGCTTTCTTTGCTTGTCT	57.985	34.783	0.00	0.00	37.15	3.41
2657	4055	4.937015	ACAACAAATGCTTTCTTTGCTTGT	59.063	33.333	0.00	0.00	37.15	3.16
2660	4058	4.330620	CACACAACAAATGCTTTCTTTGCT	59.669	37.500	6.03	0.00	37.15	3.91
2687	4085	1.827344	CCTCCATGTGCACTCTCTACA	59.173	52.381	19.41	0.00	0.00	2.74
2720	4119	2.374504	CAGGAATCTGCACCCATATCCT	59.625	50.000	0.00	0.00	33.86	3.24
2753	4152	1.296727	CATGATCACGCTCATGCTGT	58.703	50.000	0.00	0.00	44.26	4.40
2764	4169	3.089573	TGATCTCACGCTCATGATCAC	57.910	47.619	0.00	0.00	39.91	3.06
2792	4197	4.917906	AGTCCTTTTTCCATGTAGAGCT	57.082	40.909	0.00	0.00	0.00	4.09
2848	4258	5.184671	TCATGCTAGCTACTGGTAGATGATG	59.815	44.000	17.23	6.40	44.52	3.07
2856	4266	8.830915	ATAATATACTCATGCTAGCTACTGGT	57.169	34.615	17.23	10.56	0.00	4.00
2922	4332	6.573434	TGATATGATCACTGGAACACTACAC	58.427	40.000	0.00	0.00	33.59	2.90
2923	4333	6.790232	TGATATGATCACTGGAACACTACA	57.210	37.500	0.00	0.00	33.59	2.74
2924	4334	9.579768	GATATGATATGATCACTGGAACACTAC	57.420	37.037	0.00	0.00	43.01	2.73
2925	4335	9.539194	AGATATGATATGATCACTGGAACACTA	57.461	33.333	0.00	0.00	43.01	2.74
2926	4336	8.312564	CAGATATGATATGATCACTGGAACACT	58.687	37.037	0.00	0.00	43.01	3.55
3074	4487	3.595173	ACAAATCGCTGCTGTACATACA	58.405	40.909	0.00	0.00	34.56	2.29
3075	4488	4.600012	AACAAATCGCTGCTGTACATAC	57.400	40.909	0.00	0.00	0.00	2.39
3076	4489	4.671508	GCAAACAAATCGCTGCTGTACATA	60.672	41.667	0.00	0.00	0.00	2.29
3077	4490	3.825308	CAAACAAATCGCTGCTGTACAT	58.175	40.909	0.00	0.00	0.00	2.29
3078	4491	2.604373	GCAAACAAATCGCTGCTGTACA	60.604	45.455	0.00	0.00	0.00	2.90
3079	4492	1.978782	GCAAACAAATCGCTGCTGTAC	59.021	47.619	0.00	0.00	0.00	2.90
3080	4493	1.606189	TGCAAACAAATCGCTGCTGTA	59.394	42.857	0.00	0.00	35.78	2.74
3081	4494	0.385029	TGCAAACAAATCGCTGCTGT	59.615	45.000	0.00	0.00	35.78	4.40
3082	4495	0.780002	GTGCAAACAAATCGCTGCTG	59.220	50.000	0.00	0.00	35.78	4.41
3083	4496	0.670162	AGTGCAAACAAATCGCTGCT	59.330	45.000	0.00	0.00	35.78	4.24
3084	4497	0.780002	CAGTGCAAACAAATCGCTGC	59.220	50.000	0.00	0.00	32.59	5.25
3085	4498	2.404265	TCAGTGCAAACAAATCGCTG	57.596	45.000	0.00	0.00	39.09	5.18
3086	4499	2.618241	TCTTCAGTGCAAACAAATCGCT	59.382	40.909	0.00	0.00	0.00	4.93
3087	4500	2.721090	GTCTTCAGTGCAAACAAATCGC	59.279	45.455	0.00	0.00	0.00	4.58
3088	4501	4.214980	AGTCTTCAGTGCAAACAAATCG	57.785	40.909	0.00	0.00	0.00	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.