Multiple sequence alignment - TraesCS1B01G228400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G228400 chr1B 100.000 3693 0 0 1 3693 409674471 409670779 0.000000e+00 6820.0
1 TraesCS1B01G228400 chr1D 89.285 3145 158 65 576 3561 302880153 302877029 0.000000e+00 3775.0
2 TraesCS1B01G228400 chr1D 91.971 137 6 2 334 470 302880277 302880146 1.750000e-43 187.0
3 TraesCS1B01G228400 chr1D 89.474 76 8 0 1401 1476 81726309 81726384 3.040000e-16 97.1
4 TraesCS1B01G228400 chr1A 90.747 1232 52 21 1879 3060 377450481 377449262 0.000000e+00 1587.0
5 TraesCS1B01G228400 chr1A 87.447 1402 62 30 576 1892 377451871 377450499 0.000000e+00 1509.0
6 TraesCS1B01G228400 chr1A 89.100 633 41 13 3081 3693 377448941 377448317 0.000000e+00 761.0
7 TraesCS1B01G228400 chr1A 92.701 137 5 3 334 470 377451995 377451864 3.760000e-45 193.0
8 TraesCS1B01G228400 chr1A 99.038 104 1 0 472 575 100369924 100369821 1.750000e-43 187.0
9 TraesCS1B01G228400 chr1A 80.488 123 22 2 1360 1481 60539573 60539694 3.930000e-15 93.5
10 TraesCS1B01G228400 chr2D 93.431 137 9 0 170 306 645613186 645613050 1.740000e-48 204.0
11 TraesCS1B01G228400 chr2D 93.333 135 9 0 171 305 592467976 592468110 2.250000e-47 200.0
12 TraesCS1B01G228400 chr2D 93.333 135 8 1 171 305 478537451 478537318 8.090000e-47 198.0
13 TraesCS1B01G228400 chr2D 82.407 108 17 2 1367 1473 560991620 560991726 3.930000e-15 93.5
14 TraesCS1B01G228400 chr2D 83.077 65 9 2 1174 1237 59727242 59727305 1.430000e-04 58.4
15 TraesCS1B01G228400 chr2D 83.077 65 9 2 1174 1237 60138800 60138737 1.430000e-04 58.4
16 TraesCS1B01G228400 chr2D 84.483 58 6 3 1181 1237 59845709 59845764 2.000000e-03 54.7
17 TraesCS1B01G228400 chr4D 92.754 138 8 2 178 314 165913357 165913221 8.090000e-47 198.0
18 TraesCS1B01G228400 chr4D 88.272 162 14 3 145 305 454424588 454424745 4.870000e-44 189.0
19 TraesCS1B01G228400 chr3B 94.531 128 7 0 177 304 583843955 583843828 8.090000e-47 198.0
20 TraesCS1B01G228400 chr3B 90.972 144 12 1 178 320 348490222 348490365 3.760000e-45 193.0
21 TraesCS1B01G228400 chr3A 100.000 106 0 0 471 576 627706984 627707089 2.910000e-46 196.0
22 TraesCS1B01G228400 chr7B 100.000 104 0 0 472 575 97964047 97964150 3.760000e-45 193.0
23 TraesCS1B01G228400 chr5D 92.029 138 10 1 175 311 179325811 179325948 3.760000e-45 193.0
24 TraesCS1B01G228400 chr5D 81.308 107 18 2 1401 1506 124857577 124857472 6.570000e-13 86.1
25 TraesCS1B01G228400 chr5A 100.000 104 0 0 472 575 708080953 708080850 3.760000e-45 193.0
26 TraesCS1B01G228400 chr5A 96.552 116 2 2 462 575 169968932 169969047 1.350000e-44 191.0
27 TraesCS1B01G228400 chr5A 80.374 107 19 2 1401 1506 139083464 139083359 3.060000e-11 80.5
28 TraesCS1B01G228400 chr2B 90.909 143 12 1 164 305 378986175 378986033 1.350000e-44 191.0
29 TraesCS1B01G228400 chr2B 99.048 105 1 0 472 576 682861969 682862073 4.870000e-44 189.0
30 TraesCS1B01G228400 chr2B 99.048 105 1 0 472 576 767411291 767411187 4.870000e-44 189.0
31 TraesCS1B01G228400 chr2B 83.077 65 9 2 1174 1237 94034205 94034142 1.430000e-04 58.4
32 TraesCS1B01G228400 chr2B 83.077 65 9 2 1174 1237 94224836 94224773 1.430000e-04 58.4
33 TraesCS1B01G228400 chr2B 96.875 32 1 0 1206 1237 93112155 93112186 2.000000e-03 54.7
34 TraesCS1B01G228400 chr5B 99.048 105 1 0 472 576 542198537 542198433 4.870000e-44 189.0
35 TraesCS1B01G228400 chr5B 81.308 107 18 2 1401 1506 137671752 137671647 6.570000e-13 86.1
36 TraesCS1B01G228400 chr4A 97.297 111 2 1 466 575 638676775 638676885 1.750000e-43 187.0
37 TraesCS1B01G228400 chr2A 82.407 108 17 2 1367 1473 700976002 700976108 3.930000e-15 93.5
38 TraesCS1B01G228400 chr2A 83.077 65 9 2 1174 1237 59723634 59723697 1.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G228400 chr1B 409670779 409674471 3692 True 6820.0 6820 100.00000 1 3693 1 chr1B.!!$R1 3692
1 TraesCS1B01G228400 chr1D 302877029 302880277 3248 True 1981.0 3775 90.62800 334 3561 2 chr1D.!!$R1 3227
2 TraesCS1B01G228400 chr1A 377448317 377451995 3678 True 1012.5 1587 89.99875 334 3693 4 chr1A.!!$R2 3359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.105039 GGATGGAGTACCGGCAAGAG 59.895 60.0 0.00 0.00 39.42 2.85 F
389 390 0.319900 CACGGATAATGAGGCCTCGG 60.320 60.0 27.43 10.57 0.00 4.63 F
392 393 0.326264 GGATAATGAGGCCTCGGCAT 59.674 55.0 27.43 18.79 44.11 4.40 F
1934 2085 0.179043 GCCCTAGCTAGAACAAGGCC 60.179 60.0 22.70 0.00 35.50 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1897 0.253044 AACATGGCTATCGCAGTGGT 59.747 50.000 0.00 0.0 38.10 4.16 R
1786 1902 0.679321 TGGCAAACATGGCTATCGCA 60.679 50.000 0.00 0.0 38.10 5.10 R
2131 2309 1.066152 TGCCTCAGATCTCGATCAACG 59.934 52.381 9.38 0.0 40.22 4.10 R
3673 4244 0.036875 GCCAACCACAGAAGCTACCT 59.963 55.000 0.00 0.0 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.381789 TCCTAGTCATATAGAGAGTCAGTGT 57.618 40.000 0.00 0.00 0.00 3.55
26 27 7.220740 TCCTAGTCATATAGAGAGTCAGTGTG 58.779 42.308 0.00 0.00 0.00 3.82
27 28 6.995686 CCTAGTCATATAGAGAGTCAGTGTGT 59.004 42.308 0.00 0.00 0.00 3.72
28 29 6.691754 AGTCATATAGAGAGTCAGTGTGTG 57.308 41.667 0.00 0.00 0.00 3.82
29 30 5.067153 AGTCATATAGAGAGTCAGTGTGTGC 59.933 44.000 0.00 0.00 0.00 4.57
30 31 5.067153 GTCATATAGAGAGTCAGTGTGTGCT 59.933 44.000 0.00 0.00 0.00 4.40
31 32 6.261158 GTCATATAGAGAGTCAGTGTGTGCTA 59.739 42.308 0.00 0.00 0.00 3.49
32 33 6.828785 TCATATAGAGAGTCAGTGTGTGCTAA 59.171 38.462 0.00 0.00 0.00 3.09
33 34 3.932545 AGAGAGTCAGTGTGTGCTAAG 57.067 47.619 0.00 0.00 0.00 2.18
34 35 3.226777 AGAGAGTCAGTGTGTGCTAAGT 58.773 45.455 0.00 0.00 0.00 2.24
35 36 4.399219 AGAGAGTCAGTGTGTGCTAAGTA 58.601 43.478 0.00 0.00 0.00 2.24
36 37 5.013547 AGAGAGTCAGTGTGTGCTAAGTAT 58.986 41.667 0.00 0.00 0.00 2.12
37 38 6.181190 AGAGAGTCAGTGTGTGCTAAGTATA 58.819 40.000 0.00 0.00 0.00 1.47
38 39 6.831353 AGAGAGTCAGTGTGTGCTAAGTATAT 59.169 38.462 0.00 0.00 0.00 0.86
39 40 7.340743 AGAGAGTCAGTGTGTGCTAAGTATATT 59.659 37.037 0.00 0.00 0.00 1.28
40 41 7.841956 AGAGTCAGTGTGTGCTAAGTATATTT 58.158 34.615 0.00 0.00 0.00 1.40
41 42 7.761704 AGAGTCAGTGTGTGCTAAGTATATTTG 59.238 37.037 0.00 0.00 0.00 2.32
42 43 7.611770 AGTCAGTGTGTGCTAAGTATATTTGA 58.388 34.615 0.00 0.00 0.00 2.69
43 44 8.094548 AGTCAGTGTGTGCTAAGTATATTTGAA 58.905 33.333 0.00 0.00 0.00 2.69
44 45 8.883731 GTCAGTGTGTGCTAAGTATATTTGAAT 58.116 33.333 0.00 0.00 0.00 2.57
45 46 9.098355 TCAGTGTGTGCTAAGTATATTTGAATC 57.902 33.333 0.00 0.00 0.00 2.52
46 47 8.338259 CAGTGTGTGCTAAGTATATTTGAATCC 58.662 37.037 0.00 0.00 0.00 3.01
47 48 7.499232 AGTGTGTGCTAAGTATATTTGAATCCC 59.501 37.037 0.00 0.00 0.00 3.85
48 49 7.499232 GTGTGTGCTAAGTATATTTGAATCCCT 59.501 37.037 0.00 0.00 0.00 4.20
49 50 8.052748 TGTGTGCTAAGTATATTTGAATCCCTT 58.947 33.333 0.00 0.00 0.00 3.95
50 51 8.903820 GTGTGCTAAGTATATTTGAATCCCTTT 58.096 33.333 0.00 0.00 0.00 3.11
59 60 9.463443 GTATATTTGAATCCCTTTACAATGTGC 57.537 33.333 0.00 0.00 0.00 4.57
60 61 6.610075 ATTTGAATCCCTTTACAATGTGCT 57.390 33.333 0.00 0.00 0.00 4.40
61 62 7.716799 ATTTGAATCCCTTTACAATGTGCTA 57.283 32.000 0.00 0.00 0.00 3.49
62 63 6.509418 TTGAATCCCTTTACAATGTGCTAC 57.491 37.500 0.00 0.00 0.00 3.58
63 64 5.565509 TGAATCCCTTTACAATGTGCTACA 58.434 37.500 0.00 0.00 0.00 2.74
64 65 6.186957 TGAATCCCTTTACAATGTGCTACAT 58.813 36.000 0.00 0.00 41.31 2.29
79 80 8.673626 ATGTGCTACATTGAGAAATAAAAACG 57.326 30.769 0.00 0.00 34.67 3.60
80 81 7.081349 TGTGCTACATTGAGAAATAAAAACGG 58.919 34.615 0.00 0.00 0.00 4.44
81 82 7.041030 TGTGCTACATTGAGAAATAAAAACGGA 60.041 33.333 0.00 0.00 0.00 4.69
82 83 7.806014 GTGCTACATTGAGAAATAAAAACGGAA 59.194 33.333 0.00 0.00 0.00 4.30
83 84 7.806014 TGCTACATTGAGAAATAAAAACGGAAC 59.194 33.333 0.00 0.00 0.00 3.62
84 85 7.806014 GCTACATTGAGAAATAAAAACGGAACA 59.194 33.333 0.00 0.00 0.00 3.18
85 86 9.672086 CTACATTGAGAAATAAAAACGGAACAA 57.328 29.630 0.00 0.00 0.00 2.83
86 87 8.934507 ACATTGAGAAATAAAAACGGAACAAA 57.065 26.923 0.00 0.00 0.00 2.83
87 88 9.372369 ACATTGAGAAATAAAAACGGAACAAAA 57.628 25.926 0.00 0.00 0.00 2.44
90 91 7.846485 TGAGAAATAAAAACGGAACAAAATGC 58.154 30.769 0.00 0.00 0.00 3.56
91 92 7.708752 TGAGAAATAAAAACGGAACAAAATGCT 59.291 29.630 0.00 0.00 0.00 3.79
92 93 9.187455 GAGAAATAAAAACGGAACAAAATGCTA 57.813 29.630 0.00 0.00 0.00 3.49
93 94 8.974408 AGAAATAAAAACGGAACAAAATGCTAC 58.026 29.630 0.00 0.00 0.00 3.58
94 95 8.880878 AAATAAAAACGGAACAAAATGCTACT 57.119 26.923 0.00 0.00 0.00 2.57
95 96 8.515473 AATAAAAACGGAACAAAATGCTACTC 57.485 30.769 0.00 0.00 0.00 2.59
96 97 4.499037 AAACGGAACAAAATGCTACTCC 57.501 40.909 0.00 0.00 0.00 3.85
97 98 2.433436 ACGGAACAAAATGCTACTCCC 58.567 47.619 0.00 0.00 0.00 4.30
98 99 2.039879 ACGGAACAAAATGCTACTCCCT 59.960 45.455 0.00 0.00 0.00 4.20
99 100 2.678336 CGGAACAAAATGCTACTCCCTC 59.322 50.000 0.00 0.00 0.00 4.30
100 101 3.017442 GGAACAAAATGCTACTCCCTCC 58.983 50.000 0.00 0.00 0.00 4.30
101 102 2.403252 ACAAAATGCTACTCCCTCCG 57.597 50.000 0.00 0.00 0.00 4.63
102 103 1.628846 ACAAAATGCTACTCCCTCCGT 59.371 47.619 0.00 0.00 0.00 4.69
103 104 2.280628 CAAAATGCTACTCCCTCCGTC 58.719 52.381 0.00 0.00 0.00 4.79
104 105 0.831307 AAATGCTACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
105 106 1.049289 AATGCTACTCCCTCCGTCCC 61.049 60.000 0.00 0.00 0.00 4.46
106 107 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
107 108 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
108 109 1.049289 GCTACTCCCTCCGTCCCATT 61.049 60.000 0.00 0.00 0.00 3.16
109 110 1.756690 GCTACTCCCTCCGTCCCATTA 60.757 57.143 0.00 0.00 0.00 1.90
110 111 2.890814 CTACTCCCTCCGTCCCATTAT 58.109 52.381 0.00 0.00 0.00 1.28
111 112 1.424638 ACTCCCTCCGTCCCATTATG 58.575 55.000 0.00 0.00 0.00 1.90
112 113 0.687354 CTCCCTCCGTCCCATTATGG 59.313 60.000 3.85 3.85 37.25 2.74
128 129 2.917713 ATGGGCCCATAAGTGTCAAA 57.082 45.000 36.79 3.46 34.49 2.69
129 130 2.685106 TGGGCCCATAAGTGTCAAAA 57.315 45.000 24.45 0.00 0.00 2.44
130 131 2.964209 TGGGCCCATAAGTGTCAAAAA 58.036 42.857 24.45 0.00 0.00 1.94
131 132 2.630580 TGGGCCCATAAGTGTCAAAAAC 59.369 45.455 24.45 0.00 0.00 2.43
132 133 2.352323 GGGCCCATAAGTGTCAAAAACG 60.352 50.000 19.95 0.00 0.00 3.60
133 134 2.324860 GCCCATAAGTGTCAAAAACGC 58.675 47.619 0.00 0.00 38.74 4.84
142 143 5.025986 AGTGTCAAAAACGCTTATTACGG 57.974 39.130 0.00 0.00 46.62 4.02
143 144 4.083696 AGTGTCAAAAACGCTTATTACGGG 60.084 41.667 0.00 0.00 46.62 5.28
144 145 4.063689 TGTCAAAAACGCTTATTACGGGA 58.936 39.130 0.00 0.00 34.00 5.14
145 146 4.083908 TGTCAAAAACGCTTATTACGGGAC 60.084 41.667 0.00 0.00 34.00 4.46
146 147 4.063689 TCAAAAACGCTTATTACGGGACA 58.936 39.130 0.00 0.00 34.00 4.02
147 148 4.152759 TCAAAAACGCTTATTACGGGACAG 59.847 41.667 0.00 0.00 34.00 3.51
148 149 3.598019 AAACGCTTATTACGGGACAGA 57.402 42.857 0.00 0.00 34.00 3.41
149 150 2.865343 ACGCTTATTACGGGACAGAG 57.135 50.000 0.00 0.00 34.00 3.35
150 151 2.372264 ACGCTTATTACGGGACAGAGA 58.628 47.619 0.00 0.00 34.00 3.10
151 152 2.358267 ACGCTTATTACGGGACAGAGAG 59.642 50.000 0.00 0.00 34.00 3.20
152 153 2.358267 CGCTTATTACGGGACAGAGAGT 59.642 50.000 0.00 0.00 0.00 3.24
153 154 3.562973 CGCTTATTACGGGACAGAGAGTA 59.437 47.826 0.00 0.00 0.00 2.59
154 155 4.319622 CGCTTATTACGGGACAGAGAGTAG 60.320 50.000 0.00 0.00 0.00 2.57
155 156 4.579753 GCTTATTACGGGACAGAGAGTAGT 59.420 45.833 0.00 0.00 0.00 2.73
156 157 5.505985 GCTTATTACGGGACAGAGAGTAGTG 60.506 48.000 0.00 0.00 0.00 2.74
157 158 3.708403 TTACGGGACAGAGAGTAGTGA 57.292 47.619 0.00 0.00 0.00 3.41
158 159 1.823797 ACGGGACAGAGAGTAGTGAC 58.176 55.000 0.00 0.00 0.00 3.67
159 160 0.727970 CGGGACAGAGAGTAGTGACG 59.272 60.000 0.00 0.00 0.00 4.35
160 161 1.675116 CGGGACAGAGAGTAGTGACGA 60.675 57.143 0.00 0.00 0.00 4.20
161 162 2.434428 GGGACAGAGAGTAGTGACGAA 58.566 52.381 0.00 0.00 0.00 3.85
162 163 2.420722 GGGACAGAGAGTAGTGACGAAG 59.579 54.545 0.00 0.00 0.00 3.79
163 164 2.159490 GGACAGAGAGTAGTGACGAAGC 60.159 54.545 0.00 0.00 0.00 3.86
164 165 2.745281 GACAGAGAGTAGTGACGAAGCT 59.255 50.000 0.00 0.00 0.00 3.74
165 166 2.486203 ACAGAGAGTAGTGACGAAGCTG 59.514 50.000 0.00 0.00 0.00 4.24
166 167 2.486203 CAGAGAGTAGTGACGAAGCTGT 59.514 50.000 0.00 0.00 0.00 4.40
167 168 3.057876 CAGAGAGTAGTGACGAAGCTGTT 60.058 47.826 0.00 0.00 0.00 3.16
168 169 3.057876 AGAGAGTAGTGACGAAGCTGTTG 60.058 47.826 0.00 0.00 0.00 3.33
169 170 2.029828 AGAGTAGTGACGAAGCTGTTGG 60.030 50.000 0.00 0.00 0.00 3.77
170 171 1.687123 AGTAGTGACGAAGCTGTTGGT 59.313 47.619 0.00 0.00 0.00 3.67
171 172 2.889045 AGTAGTGACGAAGCTGTTGGTA 59.111 45.455 0.00 0.00 0.00 3.25
172 173 2.440539 AGTGACGAAGCTGTTGGTAG 57.559 50.000 0.00 0.00 0.00 3.18
173 174 0.790814 GTGACGAAGCTGTTGGTAGC 59.209 55.000 0.00 0.00 44.01 3.58
182 183 3.439895 GCTGTTGGTAGCTAGTACTCC 57.560 52.381 0.00 0.00 40.52 3.85
183 184 2.101082 GCTGTTGGTAGCTAGTACTCCC 59.899 54.545 0.00 0.00 40.52 4.30
184 185 3.633418 CTGTTGGTAGCTAGTACTCCCT 58.367 50.000 0.00 0.00 0.00 4.20
185 186 3.629087 TGTTGGTAGCTAGTACTCCCTC 58.371 50.000 0.00 0.00 0.00 4.30
186 187 2.957680 GTTGGTAGCTAGTACTCCCTCC 59.042 54.545 0.00 0.00 0.00 4.30
187 188 1.142465 TGGTAGCTAGTACTCCCTCCG 59.858 57.143 0.00 0.00 0.00 4.63
188 189 1.142667 GGTAGCTAGTACTCCCTCCGT 59.857 57.143 0.00 0.00 0.00 4.69
189 190 2.493035 GTAGCTAGTACTCCCTCCGTC 58.507 57.143 0.00 0.00 0.00 4.79
190 191 1.215140 AGCTAGTACTCCCTCCGTCT 58.785 55.000 0.00 0.00 0.00 4.18
191 192 1.134037 AGCTAGTACTCCCTCCGTCTG 60.134 57.143 0.00 0.00 0.00 3.51
192 193 1.134159 GCTAGTACTCCCTCCGTCTGA 60.134 57.143 0.00 0.00 0.00 3.27
193 194 2.683152 GCTAGTACTCCCTCCGTCTGAA 60.683 54.545 0.00 0.00 0.00 3.02
194 195 2.599408 AGTACTCCCTCCGTCTGAAA 57.401 50.000 0.00 0.00 0.00 2.69
195 196 2.885616 AGTACTCCCTCCGTCTGAAAA 58.114 47.619 0.00 0.00 0.00 2.29
196 197 3.442076 AGTACTCCCTCCGTCTGAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
197 198 4.607239 AGTACTCCCTCCGTCTGAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
198 199 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
199 200 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
200 201 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
201 202 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
202 203 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
203 204 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
204 205 4.562757 CCCTCCGTCTGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
205 206 5.178797 CCTCCGTCTGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
206 207 5.643777 CCTCCGTCTGAAAATACTTGTCATT 59.356 40.000 0.00 0.00 0.00 2.57
207 208 6.816640 CCTCCGTCTGAAAATACTTGTCATTA 59.183 38.462 0.00 0.00 0.00 1.90
208 209 7.333423 CCTCCGTCTGAAAATACTTGTCATTAA 59.667 37.037 0.00 0.00 0.00 1.40
209 210 8.610248 TCCGTCTGAAAATACTTGTCATTAAA 57.390 30.769 0.00 0.00 0.00 1.52
210 211 9.058174 TCCGTCTGAAAATACTTGTCATTAAAA 57.942 29.630 0.00 0.00 0.00 1.52
211 212 9.840427 CCGTCTGAAAATACTTGTCATTAAAAT 57.160 29.630 0.00 0.00 0.00 1.82
290 291 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
291 292 7.447374 TCATTTTGATGACAAGTATTTCCGT 57.553 32.000 0.00 0.00 37.32 4.69
292 293 8.554835 TCATTTTGATGACAAGTATTTCCGTA 57.445 30.769 0.00 0.00 37.32 4.02
293 294 8.447833 TCATTTTGATGACAAGTATTTCCGTAC 58.552 33.333 0.00 0.00 37.32 3.67
294 295 6.397831 TTTGATGACAAGTATTTCCGTACG 57.602 37.500 8.69 8.69 37.32 3.67
295 296 4.426416 TGATGACAAGTATTTCCGTACGG 58.574 43.478 28.66 28.66 0.00 4.02
296 297 4.158209 TGATGACAAGTATTTCCGTACGGA 59.842 41.667 32.61 32.61 43.52 4.69
297 298 4.724074 TGACAAGTATTTCCGTACGGAT 57.276 40.909 35.88 24.78 44.74 4.18
298 299 4.426416 TGACAAGTATTTCCGTACGGATG 58.574 43.478 35.88 29.50 44.74 3.51
299 300 3.788937 ACAAGTATTTCCGTACGGATGG 58.211 45.455 35.88 21.14 44.74 3.51
300 301 3.448301 ACAAGTATTTCCGTACGGATGGA 59.552 43.478 35.88 24.36 44.74 3.41
301 302 4.049186 CAAGTATTTCCGTACGGATGGAG 58.951 47.826 35.88 18.36 44.74 3.86
302 303 3.294214 AGTATTTCCGTACGGATGGAGT 58.706 45.455 35.88 22.42 44.74 3.85
303 304 4.464008 AGTATTTCCGTACGGATGGAGTA 58.536 43.478 35.88 19.71 44.74 2.59
304 305 3.722728 ATTTCCGTACGGATGGAGTAC 57.277 47.619 35.88 0.00 44.74 2.73
305 306 1.392589 TTCCGTACGGATGGAGTACC 58.607 55.000 35.88 0.00 44.74 3.34
310 311 2.897207 CGGATGGAGTACCGGCAA 59.103 61.111 0.00 0.00 44.59 4.52
311 312 1.227263 CGGATGGAGTACCGGCAAG 60.227 63.158 0.00 0.00 44.59 4.01
312 313 1.672854 CGGATGGAGTACCGGCAAGA 61.673 60.000 0.00 0.00 44.59 3.02
313 314 0.105039 GGATGGAGTACCGGCAAGAG 59.895 60.000 0.00 0.00 39.42 2.85
314 315 0.824759 GATGGAGTACCGGCAAGAGT 59.175 55.000 0.00 0.00 39.42 3.24
315 316 1.207329 GATGGAGTACCGGCAAGAGTT 59.793 52.381 0.00 0.00 39.42 3.01
316 317 1.053424 TGGAGTACCGGCAAGAGTTT 58.947 50.000 0.00 0.00 39.42 2.66
317 318 1.418637 TGGAGTACCGGCAAGAGTTTT 59.581 47.619 0.00 0.00 39.42 2.43
318 319 2.158726 TGGAGTACCGGCAAGAGTTTTT 60.159 45.455 0.00 0.00 39.42 1.94
386 387 1.451936 GGCACGGATAATGAGGCCT 59.548 57.895 3.86 3.86 38.37 5.19
387 388 0.603975 GGCACGGATAATGAGGCCTC 60.604 60.000 26.78 26.78 38.37 4.70
388 389 0.946221 GCACGGATAATGAGGCCTCG 60.946 60.000 27.43 16.68 0.00 4.63
389 390 0.319900 CACGGATAATGAGGCCTCGG 60.320 60.000 27.43 10.57 0.00 4.63
390 391 1.374758 CGGATAATGAGGCCTCGGC 60.375 63.158 27.43 13.86 41.06 5.54
391 392 1.754745 GGATAATGAGGCCTCGGCA 59.245 57.895 27.43 14.81 44.11 5.69
392 393 0.326264 GGATAATGAGGCCTCGGCAT 59.674 55.000 27.43 18.79 44.11 4.40
417 418 4.166888 GAGCAGGCGCAGGATCCA 62.167 66.667 15.82 0.00 42.27 3.41
470 471 1.380302 GGCCACACCTGTCCATCTT 59.620 57.895 0.00 0.00 34.51 2.40
471 472 0.962356 GGCCACACCTGTCCATCTTG 60.962 60.000 0.00 0.00 34.51 3.02
472 473 0.962356 GCCACACCTGTCCATCTTGG 60.962 60.000 0.00 0.00 39.43 3.61
473 474 0.692476 CCACACCTGTCCATCTTGGA 59.308 55.000 0.00 0.00 45.98 3.53
480 481 4.399764 TCCATCTTGGAGCCGGAT 57.600 55.556 5.05 0.00 42.67 4.18
481 482 2.136791 TCCATCTTGGAGCCGGATC 58.863 57.895 12.38 12.38 42.67 3.36
482 483 1.072159 CCATCTTGGAGCCGGATCC 59.928 63.158 32.10 32.10 40.96 3.36
483 484 1.072159 CATCTTGGAGCCGGATCCC 59.928 63.158 34.85 17.92 38.72 3.85
484 485 2.150051 ATCTTGGAGCCGGATCCCC 61.150 63.158 34.85 13.85 38.72 4.81
485 486 2.628187 ATCTTGGAGCCGGATCCCCT 62.628 60.000 34.85 14.46 38.72 4.79
486 487 3.089874 TTGGAGCCGGATCCCCTG 61.090 66.667 34.85 0.00 38.72 4.45
487 488 3.634157 TTGGAGCCGGATCCCCTGA 62.634 63.158 34.85 14.76 38.72 3.86
488 489 3.551407 GGAGCCGGATCCCCTGAC 61.551 72.222 28.96 0.78 32.79 3.51
489 490 3.917760 GAGCCGGATCCCCTGACG 61.918 72.222 9.02 0.00 0.00 4.35
490 491 4.779733 AGCCGGATCCCCTGACGT 62.780 66.667 5.05 0.00 0.00 4.34
491 492 2.836360 GCCGGATCCCCTGACGTA 60.836 66.667 5.05 0.00 0.00 3.57
492 493 3.126528 CCGGATCCCCTGACGTAC 58.873 66.667 6.06 0.00 0.00 3.67
493 494 2.719979 CGGATCCCCTGACGTACG 59.280 66.667 15.01 15.01 0.00 3.67
494 495 2.842256 CGGATCCCCTGACGTACGG 61.842 68.421 21.06 1.19 0.00 4.02
495 496 2.416260 GATCCCCTGACGTACGGC 59.584 66.667 21.06 18.72 0.00 5.68
496 497 3.148031 GATCCCCTGACGTACGGCC 62.148 68.421 20.48 10.81 0.00 6.13
501 502 4.143333 CTGACGTACGGCCCCCTG 62.143 72.222 20.48 0.00 0.00 4.45
552 553 2.972505 CACGTCAGTGTGTGGGCC 60.973 66.667 0.00 0.00 43.15 5.80
553 554 4.602259 ACGTCAGTGTGTGGGCCG 62.602 66.667 0.00 0.00 0.00 6.13
554 555 4.602259 CGTCAGTGTGTGGGCCGT 62.602 66.667 0.00 0.00 0.00 5.68
555 556 2.738480 GTCAGTGTGTGGGCCGTA 59.262 61.111 0.00 0.00 0.00 4.02
556 557 1.666872 GTCAGTGTGTGGGCCGTAC 60.667 63.158 0.00 0.29 0.00 3.67
557 558 2.736995 CAGTGTGTGGGCCGTACG 60.737 66.667 8.69 8.69 0.00 3.67
558 559 3.228759 AGTGTGTGGGCCGTACGT 61.229 61.111 15.21 0.00 0.00 3.57
559 560 2.735857 GTGTGTGGGCCGTACGTC 60.736 66.667 15.21 0.00 0.00 4.34
560 561 3.225061 TGTGTGGGCCGTACGTCA 61.225 61.111 15.21 6.80 0.00 4.35
561 562 2.431942 GTGTGGGCCGTACGTCAG 60.432 66.667 15.21 0.00 0.00 3.51
562 563 2.598099 TGTGGGCCGTACGTCAGA 60.598 61.111 15.21 5.46 0.00 3.27
563 564 2.126189 GTGGGCCGTACGTCAGAC 60.126 66.667 15.21 0.25 0.00 3.51
565 566 3.434319 GGGCCGTACGTCAGACGA 61.434 66.667 29.53 10.29 46.05 4.20
566 567 2.099831 GGCCGTACGTCAGACGAG 59.900 66.667 29.53 18.07 46.05 4.18
567 568 2.576317 GCCGTACGTCAGACGAGC 60.576 66.667 29.53 20.07 46.05 5.03
568 569 2.099831 CCGTACGTCAGACGAGCC 59.900 66.667 29.53 14.28 46.05 4.70
569 570 2.276493 CGTACGTCAGACGAGCCG 60.276 66.667 29.53 21.16 46.05 5.52
570 571 2.576317 GTACGTCAGACGAGCCGC 60.576 66.667 29.53 10.01 46.05 6.53
571 572 4.156622 TACGTCAGACGAGCCGCG 62.157 66.667 29.53 0.00 46.05 6.46
597 598 3.643320 GTCCATCTCACTGGTCCATGATA 59.357 47.826 0.00 0.00 37.57 2.15
627 628 3.620226 GCTTCCTTCTTCTCCCCTTGTAC 60.620 52.174 0.00 0.00 0.00 2.90
628 629 3.562108 TCCTTCTTCTCCCCTTGTACT 57.438 47.619 0.00 0.00 0.00 2.73
629 630 3.870559 TCCTTCTTCTCCCCTTGTACTT 58.129 45.455 0.00 0.00 0.00 2.24
713 714 3.192844 CACGATCCAACCTATATAGCCGT 59.807 47.826 4.04 0.00 0.00 5.68
729 730 1.078497 CGTGCCACCATTCTGCCTA 60.078 57.895 0.00 0.00 0.00 3.93
732 733 1.819632 GCCACCATTCTGCCTACGG 60.820 63.158 0.00 0.00 0.00 4.02
768 793 1.661821 GCTTGCACAGTCGTCGAGT 60.662 57.895 0.00 0.00 0.00 4.18
801 826 3.897122 GTCAAGTGGCCACCCCCA 61.897 66.667 32.29 11.31 0.00 4.96
802 827 2.863484 TCAAGTGGCCACCCCCAT 60.863 61.111 32.29 10.87 37.20 4.00
810 842 2.774351 CCACCCCCATCTCCCTCC 60.774 72.222 0.00 0.00 0.00 4.30
814 846 2.122189 CCCCATCTCCCTCCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
816 848 2.122189 CCATCTCCCTCCCTCCCC 60.122 72.222 0.00 0.00 0.00 4.81
834 866 0.540454 CCCTCTCTCTCATTGCTGCA 59.460 55.000 0.00 0.00 0.00 4.41
889 921 3.940480 TGCTCACCCTCCCCCTCA 61.940 66.667 0.00 0.00 0.00 3.86
985 1041 0.476771 GAGGGAGAGGAGGAGATCGT 59.523 60.000 0.00 0.00 0.00 3.73
1268 1350 3.618690 ACATACTGCTCCTTCTTCCAC 57.381 47.619 0.00 0.00 0.00 4.02
1269 1351 2.093973 ACATACTGCTCCTTCTTCCACG 60.094 50.000 0.00 0.00 0.00 4.94
1297 1389 3.702792 TCTAGCTAGTTTGCTCACCTCT 58.297 45.455 20.10 0.00 42.97 3.69
1529 1621 0.590682 TACGTTCGTTCGCTACCACA 59.409 50.000 2.62 0.00 0.00 4.17
1607 1723 3.000727 GCTACCATGTTACTGTTCGCTT 58.999 45.455 0.00 0.00 0.00 4.68
1609 1725 3.402628 ACCATGTTACTGTTCGCTTCT 57.597 42.857 0.00 0.00 0.00 2.85
1622 1738 3.071874 TCGCTTCTCCATTTCCATTGT 57.928 42.857 0.00 0.00 0.00 2.71
1673 1789 3.005791 TGACTATTGGCACATCGATCGAT 59.994 43.478 24.60 24.60 39.30 3.59
1714 1830 2.285069 TATGCGGTGACCCTGGGT 60.285 61.111 20.72 20.72 39.44 4.51
1741 1857 1.958715 CGGCATGTTGTCGGTGTCA 60.959 57.895 0.00 0.00 42.52 3.58
1781 1897 4.429212 CGCCCCACGTCGACATCA 62.429 66.667 17.16 0.00 36.87 3.07
1786 1902 1.289066 CCACGTCGACATCACCACT 59.711 57.895 17.16 0.00 0.00 4.00
1898 2049 6.884295 TCATCAACTATCTTGGTTTACCCTTG 59.116 38.462 0.00 0.00 34.29 3.61
1916 2067 2.175236 GCCACTAGCAGTCCTTTGC 58.825 57.895 0.00 0.00 44.41 3.68
1934 2085 0.179043 GCCCTAGCTAGAACAAGGCC 60.179 60.000 22.70 0.00 35.50 5.19
1944 2095 4.444876 GCTAGAACAAGGCCTATTCCATGA 60.445 45.833 20.88 7.95 0.00 3.07
1956 2107 4.825634 CCTATTCCATGATGCATCAACACT 59.174 41.667 31.79 13.96 40.69 3.55
2067 2232 2.919229 CGCCGTGTATCTAACGTCTTTT 59.081 45.455 0.00 0.00 39.38 2.27
2068 2233 3.365820 CGCCGTGTATCTAACGTCTTTTT 59.634 43.478 0.00 0.00 39.38 1.94
2085 2263 9.059260 ACGTCTTTTTGCTTAACCTAATTAGAA 57.941 29.630 14.28 0.00 0.00 2.10
2108 2286 8.468399 AGAACAGTATTCAACTAAGTACCTAGC 58.532 37.037 0.00 0.00 35.76 3.42
2109 2287 7.957992 ACAGTATTCAACTAAGTACCTAGCT 57.042 36.000 0.00 0.00 35.76 3.32
2110 2288 9.471702 AACAGTATTCAACTAAGTACCTAGCTA 57.528 33.333 0.00 0.00 35.76 3.32
2111 2289 9.122779 ACAGTATTCAACTAAGTACCTAGCTAG 57.877 37.037 14.20 14.20 35.76 3.42
2115 2293 6.754702 TCAACTAAGTACCTAGCTAGTGTG 57.245 41.667 19.31 6.95 0.00 3.82
2131 2309 5.921408 GCTAGTGTGTGTATAGTATTCTGCC 59.079 44.000 0.00 0.00 0.00 4.85
2162 2340 2.113860 TCTGAGGCACATTGGTAAGC 57.886 50.000 0.00 0.00 0.00 3.09
2167 2345 1.654023 GGCACATTGGTAAGCGGGTC 61.654 60.000 0.00 0.00 0.00 4.46
2168 2346 0.958382 GCACATTGGTAAGCGGGTCA 60.958 55.000 0.00 0.00 0.00 4.02
2196 2374 1.614996 TCGCACACACAAATTCCCAT 58.385 45.000 0.00 0.00 0.00 4.00
2247 2425 6.995091 AGGAATCTTACAATAATCTGAGCACC 59.005 38.462 0.00 0.00 0.00 5.01
2339 2539 3.066198 AGGACCGCCTGTACAACC 58.934 61.111 0.00 0.00 44.90 3.77
2340 2540 1.839747 AGGACCGCCTGTACAACCA 60.840 57.895 0.00 0.00 44.90 3.67
2383 2583 1.731433 CGTCCATGGACCCGACGTAT 61.731 60.000 34.05 0.00 43.29 3.06
2478 2678 2.419159 CCAGCATCCTCATCTTCGACAA 60.419 50.000 0.00 0.00 0.00 3.18
2624 2824 2.109126 GCCCACTCGATCACCAAGC 61.109 63.158 0.00 0.00 0.00 4.01
2626 2826 0.460987 CCCACTCGATCACCAAGCTC 60.461 60.000 0.00 0.00 0.00 4.09
2701 2901 6.592994 GCCGGTTTACAAACTAAACTAGAGAT 59.407 38.462 1.90 0.00 38.89 2.75
2806 3012 7.654568 TGAGATCCATGCACATTCATATTTTC 58.345 34.615 0.00 0.00 0.00 2.29
2838 3045 3.743396 GTCAAGGATCGCATGATTCTACC 59.257 47.826 0.00 0.00 39.68 3.18
2933 3144 4.713824 AAGCATTCCATGATGTGACAAG 57.286 40.909 0.00 0.00 0.00 3.16
3017 3257 5.313712 TCAAGAACCAATTAACAGGGACTC 58.686 41.667 0.60 0.00 34.60 3.36
3035 3275 3.332493 CTGCTTGGCATGACCGCAC 62.332 63.158 8.42 0.00 43.94 5.34
3069 3583 4.458989 GCAATTACTGAAGGATCAACACCA 59.541 41.667 0.00 0.00 34.49 4.17
3070 3584 5.392380 GCAATTACTGAAGGATCAACACCAG 60.392 44.000 0.00 0.00 34.49 4.00
3071 3585 2.191128 ACTGAAGGATCAACACCAGC 57.809 50.000 0.00 0.00 34.49 4.85
3073 3587 0.684535 TGAAGGATCAACACCAGCGA 59.315 50.000 0.00 0.00 30.99 4.93
3074 3588 1.079503 GAAGGATCAACACCAGCGAC 58.920 55.000 0.00 0.00 0.00 5.19
3075 3589 0.396435 AAGGATCAACACCAGCGACA 59.604 50.000 0.00 0.00 0.00 4.35
3076 3590 0.615331 AGGATCAACACCAGCGACAT 59.385 50.000 0.00 0.00 0.00 3.06
3077 3591 1.003580 AGGATCAACACCAGCGACATT 59.996 47.619 0.00 0.00 0.00 2.71
3078 3592 1.812571 GGATCAACACCAGCGACATTT 59.187 47.619 0.00 0.00 0.00 2.32
3142 3688 5.991933 AGTCAACTAGCATCTTGAAGAGA 57.008 39.130 0.00 0.00 39.13 3.10
3161 3707 3.991121 GAGACTGAAACTAGGAAGCACAC 59.009 47.826 0.00 0.00 0.00 3.82
3170 3716 5.028549 ACTAGGAAGCACACAGAATATGG 57.971 43.478 0.00 0.00 0.00 2.74
3202 3748 1.482182 CCCCAGAGGCCTTATTTTTGC 59.518 52.381 6.77 0.00 0.00 3.68
3219 3765 3.939740 TTGCTTTCCCAGATGCTATCT 57.060 42.857 0.00 0.00 41.15 1.98
3318 3873 4.278419 CCAACTGGACTGAAACCCTAAAAG 59.722 45.833 0.00 0.00 37.39 2.27
3321 3876 5.377478 ACTGGACTGAAACCCTAAAAGAAG 58.623 41.667 0.00 0.00 0.00 2.85
3337 3892 3.243359 AGAAGGGGCAATTGAACTGAA 57.757 42.857 10.34 0.00 0.00 3.02
3376 3932 2.224161 GCTTGAGCTACCCCAGTAGATG 60.224 54.545 4.45 0.00 45.09 2.90
3427 3983 8.930760 ACGCTCTTCATAAATAATTCTATCTGC 58.069 33.333 0.00 0.00 0.00 4.26
3601 4167 5.339008 AACAAGTTGATATCGGAGCTACA 57.661 39.130 10.54 0.00 0.00 2.74
3618 4189 7.707035 CGGAGCTACAATAGTATTTGTTTCTCT 59.293 37.037 0.00 0.00 40.25 3.10
3619 4190 9.384764 GGAGCTACAATAGTATTTGTTTCTCTT 57.615 33.333 0.00 0.00 40.25 2.85
3636 4207 5.368256 TCTCTTCTCACAAACTACGTACC 57.632 43.478 0.00 0.00 0.00 3.34
3643 4214 3.682377 TCACAAACTACGTACCATGCATG 59.318 43.478 20.19 20.19 0.00 4.06
3667 4238 6.713450 TGGAAGGTAGTATTTGTTTCCAACTC 59.287 38.462 1.54 0.00 40.61 3.01
3681 4252 2.457366 CAACTCGTGGAAGGTAGCTT 57.543 50.000 6.94 6.94 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.882791 CACACTGACTCTCTATATGACTAGGAT 59.117 40.741 0.00 0.00 0.00 3.24
1 2 7.147461 ACACACTGACTCTCTATATGACTAGGA 60.147 40.741 0.00 0.00 0.00 2.94
2 3 6.995686 ACACACTGACTCTCTATATGACTAGG 59.004 42.308 0.00 0.00 0.00 3.02
3 4 7.519809 GCACACACTGACTCTCTATATGACTAG 60.520 44.444 0.00 0.00 0.00 2.57
4 5 6.261158 GCACACACTGACTCTCTATATGACTA 59.739 42.308 0.00 0.00 0.00 2.59
5 6 5.067153 GCACACACTGACTCTCTATATGACT 59.933 44.000 0.00 0.00 0.00 3.41
6 7 5.067153 AGCACACACTGACTCTCTATATGAC 59.933 44.000 0.00 0.00 0.00 3.06
7 8 5.196695 AGCACACACTGACTCTCTATATGA 58.803 41.667 0.00 0.00 0.00 2.15
8 9 5.512753 AGCACACACTGACTCTCTATATG 57.487 43.478 0.00 0.00 0.00 1.78
9 10 6.831353 ACTTAGCACACACTGACTCTCTATAT 59.169 38.462 0.00 0.00 0.00 0.86
10 11 6.181190 ACTTAGCACACACTGACTCTCTATA 58.819 40.000 0.00 0.00 0.00 1.31
11 12 5.013547 ACTTAGCACACACTGACTCTCTAT 58.986 41.667 0.00 0.00 0.00 1.98
12 13 4.399219 ACTTAGCACACACTGACTCTCTA 58.601 43.478 0.00 0.00 0.00 2.43
13 14 3.226777 ACTTAGCACACACTGACTCTCT 58.773 45.455 0.00 0.00 0.00 3.10
14 15 3.651803 ACTTAGCACACACTGACTCTC 57.348 47.619 0.00 0.00 0.00 3.20
15 16 7.411486 AATATACTTAGCACACACTGACTCT 57.589 36.000 0.00 0.00 0.00 3.24
16 17 7.759886 TCAAATATACTTAGCACACACTGACTC 59.240 37.037 0.00 0.00 0.00 3.36
17 18 7.611770 TCAAATATACTTAGCACACACTGACT 58.388 34.615 0.00 0.00 0.00 3.41
18 19 7.827819 TCAAATATACTTAGCACACACTGAC 57.172 36.000 0.00 0.00 0.00 3.51
19 20 9.098355 GATTCAAATATACTTAGCACACACTGA 57.902 33.333 0.00 0.00 0.00 3.41
20 21 8.338259 GGATTCAAATATACTTAGCACACACTG 58.662 37.037 0.00 0.00 0.00 3.66
21 22 7.499232 GGGATTCAAATATACTTAGCACACACT 59.501 37.037 0.00 0.00 0.00 3.55
22 23 7.499232 AGGGATTCAAATATACTTAGCACACAC 59.501 37.037 0.00 0.00 0.00 3.82
23 24 7.573710 AGGGATTCAAATATACTTAGCACACA 58.426 34.615 0.00 0.00 0.00 3.72
24 25 8.451908 AAGGGATTCAAATATACTTAGCACAC 57.548 34.615 0.00 0.00 0.00 3.82
33 34 9.463443 GCACATTGTAAAGGGATTCAAATATAC 57.537 33.333 0.00 0.00 0.00 1.47
34 35 9.420118 AGCACATTGTAAAGGGATTCAAATATA 57.580 29.630 0.00 0.00 0.00 0.86
35 36 8.310122 AGCACATTGTAAAGGGATTCAAATAT 57.690 30.769 0.00 0.00 0.00 1.28
36 37 7.716799 AGCACATTGTAAAGGGATTCAAATA 57.283 32.000 0.00 0.00 0.00 1.40
37 38 6.610075 AGCACATTGTAAAGGGATTCAAAT 57.390 33.333 0.00 0.00 0.00 2.32
38 39 6.491745 TGTAGCACATTGTAAAGGGATTCAAA 59.508 34.615 0.00 0.00 0.00 2.69
39 40 6.007076 TGTAGCACATTGTAAAGGGATTCAA 58.993 36.000 0.00 0.00 0.00 2.69
40 41 5.565509 TGTAGCACATTGTAAAGGGATTCA 58.434 37.500 0.00 0.00 0.00 2.57
41 42 6.699575 ATGTAGCACATTGTAAAGGGATTC 57.300 37.500 0.00 0.00 34.67 2.52
54 55 7.754924 CCGTTTTTATTTCTCAATGTAGCACAT 59.245 33.333 0.00 0.00 41.31 3.21
55 56 7.041030 TCCGTTTTTATTTCTCAATGTAGCACA 60.041 33.333 0.00 0.00 0.00 4.57
56 57 7.302524 TCCGTTTTTATTTCTCAATGTAGCAC 58.697 34.615 0.00 0.00 0.00 4.40
57 58 7.441890 TCCGTTTTTATTTCTCAATGTAGCA 57.558 32.000 0.00 0.00 0.00 3.49
58 59 7.806014 TGTTCCGTTTTTATTTCTCAATGTAGC 59.194 33.333 0.00 0.00 0.00 3.58
59 60 9.672086 TTGTTCCGTTTTTATTTCTCAATGTAG 57.328 29.630 0.00 0.00 0.00 2.74
61 62 8.934507 TTTGTTCCGTTTTTATTTCTCAATGT 57.065 26.923 0.00 0.00 0.00 2.71
64 65 8.331742 GCATTTTGTTCCGTTTTTATTTCTCAA 58.668 29.630 0.00 0.00 0.00 3.02
65 66 7.708752 AGCATTTTGTTCCGTTTTTATTTCTCA 59.291 29.630 0.00 0.00 0.00 3.27
66 67 8.072238 AGCATTTTGTTCCGTTTTTATTTCTC 57.928 30.769 0.00 0.00 0.00 2.87
67 68 8.974408 GTAGCATTTTGTTCCGTTTTTATTTCT 58.026 29.630 0.00 0.00 0.00 2.52
68 69 8.974408 AGTAGCATTTTGTTCCGTTTTTATTTC 58.026 29.630 0.00 0.00 0.00 2.17
69 70 8.880878 AGTAGCATTTTGTTCCGTTTTTATTT 57.119 26.923 0.00 0.00 0.00 1.40
70 71 7.597369 GGAGTAGCATTTTGTTCCGTTTTTATT 59.403 33.333 0.00 0.00 0.00 1.40
71 72 7.088272 GGAGTAGCATTTTGTTCCGTTTTTAT 58.912 34.615 0.00 0.00 0.00 1.40
72 73 6.440436 GGAGTAGCATTTTGTTCCGTTTTTA 58.560 36.000 0.00 0.00 0.00 1.52
73 74 5.286438 GGAGTAGCATTTTGTTCCGTTTTT 58.714 37.500 0.00 0.00 0.00 1.94
74 75 4.261867 GGGAGTAGCATTTTGTTCCGTTTT 60.262 41.667 0.00 0.00 0.00 2.43
75 76 3.254903 GGGAGTAGCATTTTGTTCCGTTT 59.745 43.478 0.00 0.00 0.00 3.60
76 77 2.817844 GGGAGTAGCATTTTGTTCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
77 78 2.039879 AGGGAGTAGCATTTTGTTCCGT 59.960 45.455 0.00 0.00 0.00 4.69
78 79 2.678336 GAGGGAGTAGCATTTTGTTCCG 59.322 50.000 0.00 0.00 0.00 4.30
79 80 3.017442 GGAGGGAGTAGCATTTTGTTCC 58.983 50.000 0.00 0.00 0.00 3.62
80 81 2.678336 CGGAGGGAGTAGCATTTTGTTC 59.322 50.000 0.00 0.00 0.00 3.18
81 82 2.039879 ACGGAGGGAGTAGCATTTTGTT 59.960 45.455 0.00 0.00 0.00 2.83
82 83 1.628846 ACGGAGGGAGTAGCATTTTGT 59.371 47.619 0.00 0.00 0.00 2.83
83 84 2.280628 GACGGAGGGAGTAGCATTTTG 58.719 52.381 0.00 0.00 0.00 2.44
84 85 1.209747 GGACGGAGGGAGTAGCATTTT 59.790 52.381 0.00 0.00 0.00 1.82
85 86 0.831307 GGACGGAGGGAGTAGCATTT 59.169 55.000 0.00 0.00 0.00 2.32
86 87 1.049289 GGGACGGAGGGAGTAGCATT 61.049 60.000 0.00 0.00 0.00 3.56
87 88 1.457831 GGGACGGAGGGAGTAGCAT 60.458 63.158 0.00 0.00 0.00 3.79
88 89 2.043248 GGGACGGAGGGAGTAGCA 60.043 66.667 0.00 0.00 0.00 3.49
89 90 1.049289 AATGGGACGGAGGGAGTAGC 61.049 60.000 0.00 0.00 0.00 3.58
90 91 2.376695 TAATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
91 92 2.605257 CATAATGGGACGGAGGGAGTA 58.395 52.381 0.00 0.00 0.00 2.59
92 93 1.424638 CATAATGGGACGGAGGGAGT 58.575 55.000 0.00 0.00 0.00 3.85
93 94 0.687354 CCATAATGGGACGGAGGGAG 59.313 60.000 0.00 0.00 32.67 4.30
94 95 2.848608 CCATAATGGGACGGAGGGA 58.151 57.895 0.00 0.00 32.67 4.20
104 105 3.157087 GACACTTATGGGCCCATAATGG 58.843 50.000 43.53 37.82 44.69 3.16
105 106 3.831323 TGACACTTATGGGCCCATAATG 58.169 45.455 43.53 38.90 44.69 1.90
106 107 4.534647 TTGACACTTATGGGCCCATAAT 57.465 40.909 43.53 33.75 44.69 1.28
107 108 4.323569 TTTGACACTTATGGGCCCATAA 57.676 40.909 41.63 41.63 43.92 1.90
108 109 4.323569 TTTTGACACTTATGGGCCCATA 57.676 40.909 36.34 36.34 37.82 2.74
109 110 2.917713 TTTGACACTTATGGGCCCAT 57.082 45.000 38.67 38.67 40.19 4.00
110 111 2.630580 GTTTTTGACACTTATGGGCCCA 59.369 45.455 30.92 30.92 0.00 5.36
111 112 2.352323 CGTTTTTGACACTTATGGGCCC 60.352 50.000 17.59 17.59 0.00 5.80
112 113 2.924880 GCGTTTTTGACACTTATGGGCC 60.925 50.000 0.00 0.00 0.00 5.80
113 114 2.030274 AGCGTTTTTGACACTTATGGGC 60.030 45.455 0.00 0.00 0.00 5.36
114 115 3.915437 AGCGTTTTTGACACTTATGGG 57.085 42.857 0.00 0.00 0.00 4.00
115 116 7.215568 CGTAATAAGCGTTTTTGACACTTATGG 59.784 37.037 0.00 0.00 40.79 2.74
116 117 7.215568 CCGTAATAAGCGTTTTTGACACTTATG 59.784 37.037 0.00 0.00 40.79 1.90
117 118 7.238571 CCGTAATAAGCGTTTTTGACACTTAT 58.761 34.615 0.00 0.00 42.51 1.73
118 119 6.347563 CCCGTAATAAGCGTTTTTGACACTTA 60.348 38.462 0.00 0.00 37.31 2.24
119 120 5.445845 CCGTAATAAGCGTTTTTGACACTT 58.554 37.500 0.00 0.00 35.04 3.16
120 121 4.083696 CCCGTAATAAGCGTTTTTGACACT 60.084 41.667 0.00 0.00 0.00 3.55
121 122 4.083908 TCCCGTAATAAGCGTTTTTGACAC 60.084 41.667 0.00 0.00 0.00 3.67
122 123 4.063689 TCCCGTAATAAGCGTTTTTGACA 58.936 39.130 0.00 0.00 0.00 3.58
123 124 4.083908 TGTCCCGTAATAAGCGTTTTTGAC 60.084 41.667 0.00 0.00 0.00 3.18
124 125 4.063689 TGTCCCGTAATAAGCGTTTTTGA 58.936 39.130 0.00 0.00 0.00 2.69
125 126 4.152759 TCTGTCCCGTAATAAGCGTTTTTG 59.847 41.667 0.00 0.00 0.00 2.44
126 127 4.317488 TCTGTCCCGTAATAAGCGTTTTT 58.683 39.130 0.00 0.00 0.00 1.94
127 128 3.929094 TCTGTCCCGTAATAAGCGTTTT 58.071 40.909 0.00 0.00 0.00 2.43
128 129 3.194116 TCTCTGTCCCGTAATAAGCGTTT 59.806 43.478 0.00 0.00 0.00 3.60
129 130 2.756760 TCTCTGTCCCGTAATAAGCGTT 59.243 45.455 0.00 0.00 0.00 4.84
130 131 2.358267 CTCTCTGTCCCGTAATAAGCGT 59.642 50.000 0.00 0.00 0.00 5.07
131 132 2.358267 ACTCTCTGTCCCGTAATAAGCG 59.642 50.000 0.00 0.00 0.00 4.68
132 133 4.579753 ACTACTCTCTGTCCCGTAATAAGC 59.420 45.833 0.00 0.00 0.00 3.09
133 134 5.821470 TCACTACTCTCTGTCCCGTAATAAG 59.179 44.000 0.00 0.00 0.00 1.73
134 135 5.587844 GTCACTACTCTCTGTCCCGTAATAA 59.412 44.000 0.00 0.00 0.00 1.40
135 136 5.121811 GTCACTACTCTCTGTCCCGTAATA 58.878 45.833 0.00 0.00 0.00 0.98
136 137 3.946558 GTCACTACTCTCTGTCCCGTAAT 59.053 47.826 0.00 0.00 0.00 1.89
137 138 3.341823 GTCACTACTCTCTGTCCCGTAA 58.658 50.000 0.00 0.00 0.00 3.18
138 139 2.676176 CGTCACTACTCTCTGTCCCGTA 60.676 54.545 0.00 0.00 0.00 4.02
139 140 1.823797 GTCACTACTCTCTGTCCCGT 58.176 55.000 0.00 0.00 0.00 5.28
140 141 0.727970 CGTCACTACTCTCTGTCCCG 59.272 60.000 0.00 0.00 0.00 5.14
141 142 2.110901 TCGTCACTACTCTCTGTCCC 57.889 55.000 0.00 0.00 0.00 4.46
142 143 2.159490 GCTTCGTCACTACTCTCTGTCC 60.159 54.545 0.00 0.00 0.00 4.02
143 144 2.745281 AGCTTCGTCACTACTCTCTGTC 59.255 50.000 0.00 0.00 0.00 3.51
144 145 2.486203 CAGCTTCGTCACTACTCTCTGT 59.514 50.000 0.00 0.00 0.00 3.41
145 146 2.486203 ACAGCTTCGTCACTACTCTCTG 59.514 50.000 0.00 0.00 0.00 3.35
146 147 2.785562 ACAGCTTCGTCACTACTCTCT 58.214 47.619 0.00 0.00 0.00 3.10
147 148 3.238441 CAACAGCTTCGTCACTACTCTC 58.762 50.000 0.00 0.00 0.00 3.20
148 149 2.029828 CCAACAGCTTCGTCACTACTCT 60.030 50.000 0.00 0.00 0.00 3.24
149 150 2.288273 ACCAACAGCTTCGTCACTACTC 60.288 50.000 0.00 0.00 0.00 2.59
150 151 1.687123 ACCAACAGCTTCGTCACTACT 59.313 47.619 0.00 0.00 0.00 2.57
151 152 2.150397 ACCAACAGCTTCGTCACTAC 57.850 50.000 0.00 0.00 0.00 2.73
152 153 2.352421 GCTACCAACAGCTTCGTCACTA 60.352 50.000 0.00 0.00 38.57 2.74
153 154 1.605712 GCTACCAACAGCTTCGTCACT 60.606 52.381 0.00 0.00 38.57 3.41
154 155 0.790814 GCTACCAACAGCTTCGTCAC 59.209 55.000 0.00 0.00 38.57 3.67
155 156 3.210857 GCTACCAACAGCTTCGTCA 57.789 52.632 0.00 0.00 38.57 4.35
162 163 2.101082 GGGAGTACTAGCTACCAACAGC 59.899 54.545 0.00 0.00 39.32 4.40
163 164 3.633065 GAGGGAGTACTAGCTACCAACAG 59.367 52.174 0.00 0.00 42.02 3.16
164 165 3.626729 GGAGGGAGTACTAGCTACCAACA 60.627 52.174 0.00 0.00 42.02 3.33
165 166 2.957680 GGAGGGAGTACTAGCTACCAAC 59.042 54.545 0.00 0.00 42.02 3.77
166 167 2.422519 CGGAGGGAGTACTAGCTACCAA 60.423 54.545 0.00 0.00 42.02 3.67
167 168 1.142465 CGGAGGGAGTACTAGCTACCA 59.858 57.143 0.00 0.00 42.02 3.25
168 169 1.142667 ACGGAGGGAGTACTAGCTACC 59.857 57.143 0.00 0.00 39.83 3.18
169 170 2.104622 AGACGGAGGGAGTACTAGCTAC 59.895 54.545 0.00 0.00 0.00 3.58
170 171 2.104451 CAGACGGAGGGAGTACTAGCTA 59.896 54.545 0.00 0.00 0.00 3.32
171 172 1.134037 CAGACGGAGGGAGTACTAGCT 60.134 57.143 0.00 0.00 0.00 3.32
172 173 1.134159 TCAGACGGAGGGAGTACTAGC 60.134 57.143 0.00 0.00 0.00 3.42
173 174 3.278668 TTCAGACGGAGGGAGTACTAG 57.721 52.381 0.00 0.00 0.00 2.57
174 175 3.726557 TTTCAGACGGAGGGAGTACTA 57.273 47.619 0.00 0.00 0.00 1.82
175 176 2.599408 TTTCAGACGGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
176 177 3.889520 ATTTTCAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
177 178 4.607239 AGTATTTTCAGACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
178 179 3.442076 AGTATTTTCAGACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
179 180 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
180 181 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
181 182 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
182 183 4.566004 TGACAAGTATTTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
183 184 6.727824 AATGACAAGTATTTTCAGACGGAG 57.272 37.500 0.00 0.00 0.00 4.63
184 185 8.610248 TTTAATGACAAGTATTTTCAGACGGA 57.390 30.769 0.00 0.00 0.00 4.69
185 186 9.840427 ATTTTAATGACAAGTATTTTCAGACGG 57.160 29.630 0.00 0.00 0.00 4.79
265 266 8.522830 ACGGAAATACTTGTCATCAAAATGAAT 58.477 29.630 0.00 0.00 43.42 2.57
266 267 7.881142 ACGGAAATACTTGTCATCAAAATGAA 58.119 30.769 0.00 0.00 43.42 2.57
267 268 7.447374 ACGGAAATACTTGTCATCAAAATGA 57.553 32.000 0.00 0.00 39.63 2.57
268 269 7.425309 CGTACGGAAATACTTGTCATCAAAATG 59.575 37.037 7.57 0.00 32.87 2.32
269 270 7.413657 CCGTACGGAAATACTTGTCATCAAAAT 60.414 37.037 30.64 0.00 37.50 1.82
270 271 6.128499 CCGTACGGAAATACTTGTCATCAAAA 60.128 38.462 30.64 0.00 37.50 2.44
271 272 5.349270 CCGTACGGAAATACTTGTCATCAAA 59.651 40.000 30.64 0.00 37.50 2.69
272 273 4.865925 CCGTACGGAAATACTTGTCATCAA 59.134 41.667 30.64 0.00 37.50 2.57
273 274 4.158209 TCCGTACGGAAATACTTGTCATCA 59.842 41.667 33.96 5.78 42.05 3.07
274 275 4.675510 TCCGTACGGAAATACTTGTCATC 58.324 43.478 33.96 0.00 42.05 2.92
275 276 4.724074 TCCGTACGGAAATACTTGTCAT 57.276 40.909 33.96 0.00 42.05 3.06
288 289 1.650912 CGGTACTCCATCCGTACGG 59.349 63.158 28.66 28.66 41.58 4.02
289 290 1.650912 CCGGTACTCCATCCGTACG 59.349 63.158 8.69 8.69 44.51 3.67
290 291 1.361632 GCCGGTACTCCATCCGTAC 59.638 63.158 1.90 0.00 44.51 3.67
291 292 0.683828 TTGCCGGTACTCCATCCGTA 60.684 55.000 1.90 0.00 44.51 4.02
292 293 1.956629 CTTGCCGGTACTCCATCCGT 61.957 60.000 1.90 0.00 44.51 4.69
293 294 1.227263 CTTGCCGGTACTCCATCCG 60.227 63.158 1.90 0.00 45.42 4.18
294 295 0.105039 CTCTTGCCGGTACTCCATCC 59.895 60.000 1.90 0.00 0.00 3.51
295 296 0.824759 ACTCTTGCCGGTACTCCATC 59.175 55.000 1.90 0.00 0.00 3.51
296 297 1.276622 AACTCTTGCCGGTACTCCAT 58.723 50.000 1.90 0.00 0.00 3.41
297 298 1.053424 AAACTCTTGCCGGTACTCCA 58.947 50.000 1.90 0.00 0.00 3.86
298 299 2.180432 AAAACTCTTGCCGGTACTCC 57.820 50.000 1.90 0.00 0.00 3.85
318 319 2.864097 GCACCACACACACACACAAAAA 60.864 45.455 0.00 0.00 0.00 1.94
319 320 1.336332 GCACCACACACACACACAAAA 60.336 47.619 0.00 0.00 0.00 2.44
320 321 0.242286 GCACCACACACACACACAAA 59.758 50.000 0.00 0.00 0.00 2.83
321 322 0.890996 TGCACCACACACACACACAA 60.891 50.000 0.00 0.00 0.00 3.33
322 323 1.302832 TGCACCACACACACACACA 60.303 52.632 0.00 0.00 0.00 3.72
323 324 1.429021 CTGCACCACACACACACAC 59.571 57.895 0.00 0.00 0.00 3.82
324 325 2.405805 GCTGCACCACACACACACA 61.406 57.895 0.00 0.00 0.00 3.72
325 326 2.408835 GCTGCACCACACACACAC 59.591 61.111 0.00 0.00 0.00 3.82
326 327 2.828095 GGCTGCACCACACACACA 60.828 61.111 0.50 0.00 38.86 3.72
327 328 2.516930 AGGCTGCACCACACACAC 60.517 61.111 0.50 0.00 43.14 3.82
328 329 2.516695 CAGGCTGCACCACACACA 60.517 61.111 0.00 0.00 43.14 3.72
329 330 2.516930 ACAGGCTGCACCACACAC 60.517 61.111 15.89 0.00 43.14 3.82
330 331 2.516695 CACAGGCTGCACCACACA 60.517 61.111 15.89 0.00 43.14 3.72
331 332 3.289834 CCACAGGCTGCACCACAC 61.290 66.667 15.89 0.00 43.14 3.82
332 333 4.584518 CCCACAGGCTGCACCACA 62.585 66.667 15.89 0.00 43.14 4.17
375 376 0.036952 CGATGCCGAGGCCTCATTAT 60.037 55.000 31.67 20.76 41.09 1.28
386 387 4.819761 GCTCACTGCCGATGCCGA 62.820 66.667 0.00 0.00 38.22 5.54
388 389 3.200593 CTGCTCACTGCCGATGCC 61.201 66.667 0.00 0.00 42.00 4.40
389 390 3.200593 CCTGCTCACTGCCGATGC 61.201 66.667 0.00 0.00 42.00 3.91
390 391 3.200593 GCCTGCTCACTGCCGATG 61.201 66.667 0.00 0.00 42.00 3.84
391 392 4.827087 CGCCTGCTCACTGCCGAT 62.827 66.667 0.00 0.00 42.00 4.18
400 401 3.687321 TTGGATCCTGCGCCTGCTC 62.687 63.158 14.23 0.00 43.34 4.26
431 432 1.620819 AGTGAGATTGCGTGGAGAGTT 59.379 47.619 0.00 0.00 0.00 3.01
470 471 4.088351 TCAGGGGATCCGGCTCCA 62.088 66.667 25.14 2.13 37.01 3.86
471 472 3.551407 GTCAGGGGATCCGGCTCC 61.551 72.222 16.35 16.35 38.33 4.70
472 473 3.917760 CGTCAGGGGATCCGGCTC 61.918 72.222 5.45 0.00 38.33 4.70
473 474 3.369410 TACGTCAGGGGATCCGGCT 62.369 63.158 5.45 0.00 38.33 5.52
474 475 2.836360 TACGTCAGGGGATCCGGC 60.836 66.667 5.45 0.00 38.33 6.13
475 476 2.842256 CGTACGTCAGGGGATCCGG 61.842 68.421 7.22 0.00 38.33 5.14
476 477 2.719979 CGTACGTCAGGGGATCCG 59.280 66.667 7.22 0.00 38.33 4.18
477 478 3.126528 CCGTACGTCAGGGGATCC 58.873 66.667 15.21 1.92 0.00 3.36
478 479 2.416260 GCCGTACGTCAGGGGATC 59.584 66.667 15.21 0.00 32.45 3.36
479 480 3.152400 GGCCGTACGTCAGGGGAT 61.152 66.667 15.21 0.00 32.45 3.85
484 485 4.143333 CAGGGGGCCGTACGTCAG 62.143 72.222 15.21 0.00 0.00 3.51
535 536 2.972505 GGCCCACACACTGACGTG 60.973 66.667 0.00 0.00 46.63 4.49
536 537 4.602259 CGGCCCACACACTGACGT 62.602 66.667 0.00 0.00 0.00 4.34
537 538 3.215597 TACGGCCCACACACTGACG 62.216 63.158 0.00 0.00 0.00 4.35
538 539 1.666872 GTACGGCCCACACACTGAC 60.667 63.158 0.00 0.00 0.00 3.51
539 540 2.738480 GTACGGCCCACACACTGA 59.262 61.111 0.00 0.00 0.00 3.41
540 541 2.736995 CGTACGGCCCACACACTG 60.737 66.667 7.57 0.00 0.00 3.66
541 542 3.216944 GACGTACGGCCCACACACT 62.217 63.158 21.06 0.00 0.00 3.55
542 543 2.735857 GACGTACGGCCCACACAC 60.736 66.667 21.06 0.00 0.00 3.82
543 544 3.215597 CTGACGTACGGCCCACACA 62.216 63.158 20.48 0.00 0.00 3.72
544 545 2.431942 CTGACGTACGGCCCACAC 60.432 66.667 20.48 1.76 0.00 3.82
545 546 2.598099 TCTGACGTACGGCCCACA 60.598 61.111 20.48 9.53 0.00 4.17
546 547 2.126189 GTCTGACGTACGGCCCAC 60.126 66.667 20.48 11.37 0.00 4.61
547 548 3.740397 CGTCTGACGTACGGCCCA 61.740 66.667 20.48 12.43 36.74 5.36
548 549 3.392595 CTCGTCTGACGTACGGCCC 62.393 68.421 27.16 8.13 43.14 5.80
549 550 2.099831 CTCGTCTGACGTACGGCC 59.900 66.667 27.16 10.81 43.14 6.13
550 551 2.576317 GCTCGTCTGACGTACGGC 60.576 66.667 27.16 18.72 43.14 5.68
551 552 2.099831 GGCTCGTCTGACGTACGG 59.900 66.667 27.16 16.97 43.14 4.02
552 553 2.276493 CGGCTCGTCTGACGTACG 60.276 66.667 27.16 23.69 43.14 3.67
553 554 2.576317 GCGGCTCGTCTGACGTAC 60.576 66.667 27.16 19.93 43.14 3.67
554 555 4.156622 CGCGGCTCGTCTGACGTA 62.157 66.667 27.16 14.42 43.14 3.57
567 568 3.822192 TGAGATGGACGGACGCGG 61.822 66.667 12.47 0.00 0.00 6.46
568 569 2.579787 GTGAGATGGACGGACGCG 60.580 66.667 3.53 3.53 0.00 6.01
569 570 1.517257 CAGTGAGATGGACGGACGC 60.517 63.158 0.00 0.00 0.00 5.19
570 571 1.139734 CCAGTGAGATGGACGGACG 59.860 63.158 0.00 0.00 43.57 4.79
571 572 0.173708 GACCAGTGAGATGGACGGAC 59.826 60.000 0.00 0.00 43.57 4.79
572 573 0.970937 GGACCAGTGAGATGGACGGA 60.971 60.000 0.00 0.00 43.57 4.69
573 574 1.257750 TGGACCAGTGAGATGGACGG 61.258 60.000 0.00 0.00 43.57 4.79
574 575 0.826715 ATGGACCAGTGAGATGGACG 59.173 55.000 0.00 0.00 43.57 4.79
575 576 1.833630 TCATGGACCAGTGAGATGGAC 59.166 52.381 0.00 0.00 43.57 4.02
576 577 2.252535 TCATGGACCAGTGAGATGGA 57.747 50.000 0.00 0.00 43.57 3.41
577 578 3.645212 AGTATCATGGACCAGTGAGATGG 59.355 47.826 0.00 0.00 46.47 3.51
578 579 4.952071 AGTATCATGGACCAGTGAGATG 57.048 45.455 0.00 0.00 0.00 2.90
579 580 4.520874 CGTAGTATCATGGACCAGTGAGAT 59.479 45.833 0.00 3.75 0.00 2.75
580 581 3.883489 CGTAGTATCATGGACCAGTGAGA 59.117 47.826 0.00 0.00 0.00 3.27
581 582 3.883489 TCGTAGTATCATGGACCAGTGAG 59.117 47.826 0.00 0.00 0.00 3.51
582 583 3.893521 TCGTAGTATCATGGACCAGTGA 58.106 45.455 0.00 4.77 0.00 3.41
597 598 3.131400 GGAGAAGAAGGAAGCATCGTAGT 59.869 47.826 0.00 0.00 0.00 2.73
647 648 2.099141 AGCCGACAGTACACGTACTA 57.901 50.000 9.45 0.00 43.98 1.82
713 714 1.078497 CGTAGGCAGAATGGTGGCA 60.078 57.895 4.21 0.00 45.34 4.92
768 793 2.215942 TGACTGTACTGGCTAGCTGA 57.784 50.000 15.72 0.39 0.00 4.26
801 826 2.289979 AGGGGGAGGGAGGGAGAT 60.290 66.667 0.00 0.00 0.00 2.75
802 827 3.036959 GAGGGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
810 842 1.422531 CAATGAGAGAGAGGGGGAGG 58.577 60.000 0.00 0.00 0.00 4.30
814 846 0.179051 GCAGCAATGAGAGAGAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
816 848 1.942677 CTGCAGCAATGAGAGAGAGG 58.057 55.000 0.00 0.00 0.00 3.69
889 921 1.402259 CCGATGTGTAGCTTCTCGTCT 59.598 52.381 11.34 0.00 0.00 4.18
947 1001 0.030101 CTGCTTCTCTCCGGTCGATC 59.970 60.000 0.00 0.00 0.00 3.69
985 1041 4.584743 AGGCTGCATCGGATATATATCGAA 59.415 41.667 15.06 7.25 33.52 3.71
1044 1103 4.927782 GACGCCAGCACCACCACA 62.928 66.667 0.00 0.00 0.00 4.17
1123 1182 3.735029 GACGACCTCCACGCTCGT 61.735 66.667 0.00 0.00 43.16 4.18
1136 1195 4.193334 CGGCGCTCTGGATGACGA 62.193 66.667 7.64 0.00 0.00 4.20
1268 1350 5.807520 TGAGCAAACTAGCTAGAAGAAATCG 59.192 40.000 27.45 7.38 46.75 3.34
1269 1351 6.036626 GGTGAGCAAACTAGCTAGAAGAAATC 59.963 42.308 27.45 16.09 46.75 2.17
1297 1389 3.061231 ATGCATTGTGCCGCCGAA 61.061 55.556 0.00 0.00 44.23 4.30
1358 1450 1.663739 CGTCTTCTCCGTGTTGGGA 59.336 57.895 0.00 0.00 38.76 4.37
1551 1643 1.068474 GAGGTTTGACATCGTCACCG 58.932 55.000 0.00 0.00 42.60 4.94
1607 1723 9.753674 AACTAGAATAAACAATGGAAATGGAGA 57.246 29.630 0.00 0.00 0.00 3.71
1609 1725 9.753674 AGAACTAGAATAAACAATGGAAATGGA 57.246 29.630 0.00 0.00 0.00 3.41
1646 1762 5.984233 TCGATGTGCCAATAGTCAAATAC 57.016 39.130 0.00 0.00 0.00 1.89
1714 1830 0.907704 ACAACATGCCGTCCCTCCTA 60.908 55.000 0.00 0.00 0.00 2.94
1781 1897 0.253044 AACATGGCTATCGCAGTGGT 59.747 50.000 0.00 0.00 38.10 4.16
1786 1902 0.679321 TGGCAAACATGGCTATCGCA 60.679 50.000 0.00 0.00 38.10 5.10
1825 1941 1.504912 CCATGAGGGTGGTCATCTCT 58.495 55.000 0.00 0.00 34.81 3.10
1859 1975 2.675348 GTTGATGAAGAGAGAAAGGGCG 59.325 50.000 0.00 0.00 0.00 6.13
1860 1976 3.949132 AGTTGATGAAGAGAGAAAGGGC 58.051 45.455 0.00 0.00 0.00 5.19
1865 1982 7.487822 ACCAAGATAGTTGATGAAGAGAGAA 57.512 36.000 0.00 0.00 0.00 2.87
1898 2049 1.308783 GGCAAAGGACTGCTAGTGGC 61.309 60.000 0.00 0.00 42.25 5.01
1916 2067 1.501582 AGGCCTTGTTCTAGCTAGGG 58.498 55.000 20.58 13.86 33.09 3.53
1934 2085 6.206498 CAAGTGTTGATGCATCATGGAATAG 58.794 40.000 29.13 13.28 36.56 1.73
1944 2095 3.827876 TGACATTCCAAGTGTTGATGCAT 59.172 39.130 0.00 0.00 0.00 3.96
2085 2263 7.957992 AGCTAGGTACTTAGTTGAATACTGT 57.042 36.000 13.04 0.00 41.75 3.55
2108 2286 6.143496 CGGCAGAATACTATACACACACTAG 58.857 44.000 0.00 0.00 0.00 2.57
2109 2287 5.591472 ACGGCAGAATACTATACACACACTA 59.409 40.000 0.00 0.00 0.00 2.74
2110 2288 4.401519 ACGGCAGAATACTATACACACACT 59.598 41.667 0.00 0.00 0.00 3.55
2111 2289 4.679662 ACGGCAGAATACTATACACACAC 58.320 43.478 0.00 0.00 0.00 3.82
2115 2293 5.342525 CGATCAACGGCAGAATACTATACAC 59.657 44.000 0.00 0.00 38.46 2.90
2131 2309 1.066152 TGCCTCAGATCTCGATCAACG 59.934 52.381 9.38 0.00 40.22 4.10
2162 2340 1.127951 GTGCGATTGTTACTTGACCCG 59.872 52.381 0.00 0.00 0.00 5.28
2167 2345 3.600717 TGTGTGTGCGATTGTTACTTG 57.399 42.857 0.00 0.00 0.00 3.16
2168 2346 4.624336 TTTGTGTGTGCGATTGTTACTT 57.376 36.364 0.00 0.00 0.00 2.24
2196 2374 7.094508 TCTTACAGCAGTTGAAATTTTGACA 57.905 32.000 0.00 0.00 0.00 3.58
2232 2410 4.261489 GCAATGGAGGTGCTCAGATTATTG 60.261 45.833 0.00 0.00 39.00 1.90
2339 2539 4.326766 CTTGCCGGTGCCGTTGTG 62.327 66.667 1.90 0.00 37.81 3.33
2383 2583 2.110213 GTTGTCAGGACCCACGCA 59.890 61.111 0.00 0.00 0.00 5.24
2478 2678 4.774726 TCTTGATCTGGTTGAAGTAGCTCT 59.225 41.667 0.00 0.00 0.00 4.09
2578 2778 1.759236 GGGGAAGAAGTCGGTGGTT 59.241 57.895 0.00 0.00 0.00 3.67
2624 2824 4.856607 GACTTCGAGGGCGGCGAG 62.857 72.222 12.98 0.00 39.14 5.03
2626 2826 4.735132 TTGACTTCGAGGGCGGCG 62.735 66.667 0.51 0.51 38.28 6.46
2701 2901 8.315482 TGTGGTGTCTATAGCAATAAACTTGTA 58.685 33.333 0.00 0.00 0.00 2.41
2806 3012 1.818674 CGATCCTTGACAAAAAGGGGG 59.181 52.381 3.27 0.00 45.85 5.40
2838 3045 2.619177 CTCAGGTGGACCGACTACTATG 59.381 54.545 0.00 0.00 42.08 2.23
2933 3144 5.514274 TGATCTTGTGGGAAAACAAAGTC 57.486 39.130 0.00 0.00 39.47 3.01
2948 3159 9.551734 TTCTCCTTGTATTGTATGATGATCTTG 57.448 33.333 0.00 0.00 0.00 3.02
3017 3257 3.057548 TGCGGTCATGCCAAGCAG 61.058 61.111 6.92 0.00 43.65 4.24
3091 3634 7.870954 TGTGGCTACATTACTCCTAATTAATCG 59.129 37.037 0.00 0.00 0.00 3.34
3142 3688 3.388024 TCTGTGTGCTTCCTAGTTTCAGT 59.612 43.478 0.00 0.00 0.00 3.41
3161 3707 2.336945 TGCACTCTGCCCATATTCTG 57.663 50.000 0.00 0.00 44.23 3.02
3170 3716 2.124403 CTGGGGATGCACTCTGCC 60.124 66.667 0.00 0.00 44.23 4.85
3219 3765 3.066208 AGATTCCTCTTGCATCCCCTA 57.934 47.619 0.00 0.00 0.00 3.53
3258 3811 2.034842 CCAGACGCGCGTAATAAGAAAG 60.035 50.000 37.91 16.28 0.00 2.62
3318 3873 2.029020 GGTTCAGTTCAATTGCCCCTTC 60.029 50.000 0.00 0.00 0.00 3.46
3321 3876 1.337118 TGGTTCAGTTCAATTGCCCC 58.663 50.000 0.00 0.00 0.00 5.80
3446 4004 8.164733 TGGTTTTTCTTATACCTACCATGACAA 58.835 33.333 0.00 0.00 33.05 3.18
3447 4005 7.691213 TGGTTTTTCTTATACCTACCATGACA 58.309 34.615 0.00 0.00 33.05 3.58
3469 4027 2.308866 CCAGGGAATGTTACCTTCTGGT 59.691 50.000 0.00 0.00 38.83 4.00
3470 4028 2.945890 GCCAGGGAATGTTACCTTCTGG 60.946 54.545 0.00 0.00 38.83 3.86
3528 4094 1.469940 CCTAGCTAGCTGTGTTGACCG 60.470 57.143 27.68 2.71 0.00 4.79
3618 4189 3.991773 GCATGGTACGTAGTTTGTGAGAA 59.008 43.478 0.00 0.00 37.78 2.87
3619 4190 3.006003 TGCATGGTACGTAGTTTGTGAGA 59.994 43.478 0.00 0.00 37.78 3.27
3620 4191 3.322369 TGCATGGTACGTAGTTTGTGAG 58.678 45.455 0.00 0.00 37.78 3.51
3621 4192 3.388345 TGCATGGTACGTAGTTTGTGA 57.612 42.857 0.00 0.00 37.78 3.58
3622 4193 3.181511 CCATGCATGGTACGTAGTTTGTG 60.182 47.826 33.68 6.50 40.03 3.33
3623 4194 3.006940 CCATGCATGGTACGTAGTTTGT 58.993 45.455 33.68 0.00 40.03 2.83
3624 4195 3.673746 CCATGCATGGTACGTAGTTTG 57.326 47.619 33.68 7.13 40.03 2.93
3636 4207 6.455360 AACAAATACTACCTTCCATGCATG 57.545 37.500 20.19 20.19 0.00 4.06
3667 4238 1.673033 CCACAGAAGCTACCTTCCACG 60.673 57.143 0.00 0.00 46.97 4.94
3671 4242 2.427506 CCAACCACAGAAGCTACCTTC 58.572 52.381 0.00 0.00 46.29 3.46
3673 4244 0.036875 GCCAACCACAGAAGCTACCT 59.963 55.000 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.