Multiple sequence alignment - TraesCS1B01G227400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G227400 chr1B 100.000 6476 0 0 1 6476 408661568 408655093 0.000000e+00 11960.0
1 TraesCS1B01G227400 chr1B 95.567 2053 65 7 2269 4319 407915201 407917229 0.000000e+00 3264.0
2 TraesCS1B01G227400 chr1B 96.479 1562 34 9 409 1958 407908460 407910012 0.000000e+00 2560.0
3 TraesCS1B01G227400 chr1B 89.462 1376 103 9 4318 5682 407932233 407933577 0.000000e+00 1700.0
4 TraesCS1B01G227400 chr1B 94.802 404 21 0 2711 3114 407937839 407937436 1.180000e-176 630.0
5 TraesCS1B01G227400 chr1B 91.726 423 33 2 2273 2695 407938305 407937885 2.600000e-163 586.0
6 TraesCS1B01G227400 chr1B 96.642 268 8 1 1963 2230 407914939 407915205 1.660000e-120 444.0
7 TraesCS1B01G227400 chr1B 96.629 267 6 1 1 264 407905906 407906172 2.140000e-119 440.0
8 TraesCS1B01G227400 chr1B 94.410 161 7 2 259 418 407907575 407907734 5.010000e-61 246.0
9 TraesCS1B01G227400 chr1B 97.619 42 1 0 1924 1965 407914946 407914987 9.010000e-09 73.1
10 TraesCS1B01G227400 chr1B 97.619 42 1 0 1924 1965 408659599 408659558 9.010000e-09 73.1
11 TraesCS1B01G227400 chr1B 97.619 42 1 0 1970 2011 408659645 408659604 9.010000e-09 73.1
12 TraesCS1B01G227400 chr1B 93.023 43 3 0 5854 5896 71189116 71189158 5.420000e-06 63.9
13 TraesCS1B01G227400 chr1A 92.331 2021 120 14 3744 5741 376982118 376984126 0.000000e+00 2841.0
14 TraesCS1B01G227400 chr1A 94.891 1331 56 4 2282 3600 376980738 376982068 0.000000e+00 2071.0
15 TraesCS1B01G227400 chr1A 86.611 239 31 1 5948 6186 376991737 376991974 4.980000e-66 263.0
16 TraesCS1B01G227400 chr1A 93.233 133 7 2 5827 5959 376984126 376984256 1.840000e-45 195.0
17 TraesCS1B01G227400 chr1A 96.341 82 2 1 6126 6206 376991984 376992065 4.070000e-27 134.0
18 TraesCS1B01G227400 chr1D 94.488 1288 56 11 2282 3564 302255349 302256626 0.000000e+00 1971.0
19 TraesCS1B01G227400 chr1D 94.406 1019 54 1 4015 5033 302256948 302257963 0.000000e+00 1563.0
20 TraesCS1B01G227400 chr1D 90.900 1055 70 10 5018 6069 302261490 302262521 0.000000e+00 1393.0
21 TraesCS1B01G227400 chr1D 85.477 241 15 4 6236 6473 302262705 302262928 3.900000e-57 233.0
22 TraesCS1B01G227400 chr1D 86.854 213 17 6 3749 3954 302256737 302256945 1.820000e-55 228.0
23 TraesCS1B01G227400 chr1D 75.298 587 78 34 1278 1827 248886090 248885534 1.090000e-52 219.0
24 TraesCS1B01G227400 chr3A 82.687 387 47 10 1280 1657 744920279 744919904 6.260000e-85 326.0
25 TraesCS1B01G227400 chr3A 82.687 387 46 11 1280 1657 744994667 744994293 2.250000e-84 324.0
26 TraesCS1B01G227400 chr3A 81.701 388 49 11 1280 1657 745071761 745071386 2.930000e-78 303.0
27 TraesCS1B01G227400 chr3A 89.510 143 13 1 2033 2175 43140924 43141064 5.160000e-41 180.0
28 TraesCS1B01G227400 chr3A 88.811 143 14 1 2033 2175 43730932 43731072 2.400000e-39 174.0
29 TraesCS1B01G227400 chr3B 76.429 560 80 20 1297 1827 779506806 779507342 8.330000e-64 255.0
30 TraesCS1B01G227400 chr4A 85.542 249 21 9 1278 1517 207749466 207749224 5.010000e-61 246.0
31 TraesCS1B01G227400 chr4A 79.012 243 35 8 1296 1533 79708481 79708250 1.120000e-32 152.0
32 TraesCS1B01G227400 chr6A 91.549 142 10 2 2033 2174 109060729 109060590 1.840000e-45 195.0
33 TraesCS1B01G227400 chr6A 91.549 142 10 2 2033 2174 109087774 109087635 1.840000e-45 195.0
34 TraesCS1B01G227400 chr6A 90.210 143 12 1 2033 2175 551093503 551093363 1.110000e-42 185.0
35 TraesCS1B01G227400 chr7A 89.510 143 13 1 2033 2175 347094142 347094002 5.160000e-41 180.0
36 TraesCS1B01G227400 chr6D 80.315 254 29 10 1278 1526 107801058 107800821 8.630000e-39 172.0
37 TraesCS1B01G227400 chr5A 88.652 141 14 1 2035 2175 478844370 478844508 3.100000e-38 171.0
38 TraesCS1B01G227400 chr5A 88.112 143 15 1 2033 2175 230807667 230807527 1.120000e-37 169.0
39 TraesCS1B01G227400 chr5A 88.889 45 4 1 5861 5904 634614796 634614840 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G227400 chr1B 408655093 408661568 6475 True 4035.400000 11960 98.412667 1 6476 3 chr1B.!!$R2 6475
1 TraesCS1B01G227400 chr1B 407932233 407933577 1344 False 1700.000000 1700 89.462000 4318 5682 1 chr1B.!!$F2 1364
2 TraesCS1B01G227400 chr1B 407914939 407917229 2290 False 1260.366667 3264 96.609333 1924 4319 3 chr1B.!!$F4 2395
3 TraesCS1B01G227400 chr1B 407905906 407910012 4106 False 1082.000000 2560 95.839333 1 1958 3 chr1B.!!$F3 1957
4 TraesCS1B01G227400 chr1B 407937436 407938305 869 True 608.000000 630 93.264000 2273 3114 2 chr1B.!!$R1 841
5 TraesCS1B01G227400 chr1A 376980738 376984256 3518 False 1702.333333 2841 93.485000 2282 5959 3 chr1A.!!$F1 3677
6 TraesCS1B01G227400 chr1D 302255349 302262928 7579 False 1077.600000 1971 90.425000 2282 6473 5 chr1D.!!$F1 4191
7 TraesCS1B01G227400 chr1D 248885534 248886090 556 True 219.000000 219 75.298000 1278 1827 1 chr1D.!!$R1 549
8 TraesCS1B01G227400 chr3B 779506806 779507342 536 False 255.000000 255 76.429000 1297 1827 1 chr3B.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 1834 0.540830 TTGCCGCCTTTATTGGGTGT 60.541 50.0 0.00 0.00 32.93 4.16 F
1963 4161 0.104304 CATACCTGGACGCTACCCAC 59.896 60.0 0.00 0.00 0.00 4.61 F
1964 4162 0.324923 ATACCTGGACGCTACCCACA 60.325 55.0 0.00 0.00 0.00 4.17 F
2017 4215 0.457337 GACGTTACCCACAGGCGTAG 60.457 60.0 0.00 0.00 35.86 3.51 F
2064 4262 0.661020 ACTCGTTTTCCTGGTTTGCG 59.339 50.0 0.00 0.00 0.00 4.85 F
2653 4853 1.039785 TCTCTGAGCACCTGGATCCG 61.040 60.0 7.39 1.76 0.00 4.18 F
3069 5305 1.105167 TCCGAGAACACACAGACGGT 61.105 55.0 0.00 0.00 40.93 4.83 F
4730 7070 0.670162 CGATGGATCCAAATGGGTGC 59.330 55.0 20.67 0.00 37.15 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2267 4465 0.033503 TCCTCCATGTCGGCTGACTA 60.034 55.000 25.54 12.97 45.70 2.59 R
3052 5282 0.311165 AGACCGTCTGTGTGTTCTCG 59.689 55.000 0.00 0.00 0.00 4.04 R
3133 5372 1.303888 ACGGAGGAAGTAGACGGCA 60.304 57.895 0.00 0.00 0.00 5.69 R
3718 6053 1.839994 CCAATCAGAACTAGCCCCTGA 59.160 52.381 10.48 10.48 40.68 3.86 R
3721 6056 1.840635 AGACCAATCAGAACTAGCCCC 59.159 52.381 0.00 0.00 0.00 5.80 R
4630 6970 1.475403 TAGAGAAAGGGTCAGGAGCG 58.525 55.000 0.00 0.00 0.00 5.03 R
4763 7103 0.396811 AGGTCAACCTTCCCGTTCAG 59.603 55.000 0.00 0.00 46.09 3.02 R
6329 12286 0.036765 GCCAGACCCAATACGACACA 60.037 55.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.138283 TGGGTCCATTTTTCTGTCTCTGT 59.862 43.478 0.00 0.00 0.00 3.41
158 159 9.032624 AGATGATCATGAGGTTTTCAGATTTTT 57.967 29.630 14.30 0.00 39.68 1.94
228 232 6.598753 TGTAGACTAGTTCAAACAAAGTGC 57.401 37.500 0.00 0.00 30.58 4.40
248 252 5.769662 AGTGCCAGACTGATTTTTACATCAA 59.230 36.000 3.32 0.00 32.63 2.57
287 1698 5.714333 TCTTTCTGACTTACTGATCTGAGCT 59.286 40.000 6.60 0.00 0.00 4.09
374 1786 4.718961 ACACTGCCTTCCATATTACCATC 58.281 43.478 0.00 0.00 0.00 3.51
418 1830 1.818674 AGACTTTGCCGCCTTTATTGG 59.181 47.619 0.00 0.00 0.00 3.16
419 1831 0.894835 ACTTTGCCGCCTTTATTGGG 59.105 50.000 0.00 0.00 0.00 4.12
420 1832 0.894835 CTTTGCCGCCTTTATTGGGT 59.105 50.000 0.00 0.00 0.00 4.51
421 1833 0.605589 TTTGCCGCCTTTATTGGGTG 59.394 50.000 0.00 0.00 0.00 4.61
422 1834 0.540830 TTGCCGCCTTTATTGGGTGT 60.541 50.000 0.00 0.00 32.93 4.16
622 2772 3.119316 CGTTGTCCTGTAGATCAAGCTCT 60.119 47.826 0.00 0.00 0.00 4.09
696 2846 1.956477 AGTACAACAAGCTTGCCCAAG 59.044 47.619 26.27 13.43 41.24 3.61
721 2871 5.725325 AGACTGGAACTGGAACTAGTTAC 57.275 43.478 11.20 11.20 40.78 2.50
892 3044 4.041691 TCCCTAAATCTAAGCTACCATGGC 59.958 45.833 13.04 0.00 0.00 4.40
912 3064 5.412640 TGGCGATACTTTAAGAACGATGAA 58.587 37.500 0.00 0.00 0.00 2.57
945 3097 8.861086 GTTGATGAACTCCTAGGTATTCTGATA 58.139 37.037 21.03 8.00 0.00 2.15
1012 3168 4.100344 CCATCAAATCCATGCATTTCCTCA 59.900 41.667 0.00 0.00 0.00 3.86
1021 3177 2.726821 TGCATTTCCTCAGGTCATTCC 58.273 47.619 0.00 0.00 0.00 3.01
1061 3217 1.734047 CGCTCTACTCCTGAACTGTGC 60.734 57.143 0.00 0.00 0.00 4.57
1099 3255 1.671979 CTGGCATCACCACCATACAG 58.328 55.000 0.00 0.00 46.36 2.74
1112 3268 1.206132 CCATACAGTACTTGTCGGCCA 59.794 52.381 2.24 0.00 41.29 5.36
1348 3511 5.009710 CCAGTTTTCAGAGTAGGAAAAACCC 59.990 44.000 0.00 0.00 43.52 4.11
1360 3523 4.435425 AGGAAAAACCCGTTTTAAGTTGC 58.565 39.130 6.01 0.00 41.45 4.17
1591 3754 1.139816 CGACCACGTCATGTCCATCG 61.140 60.000 0.00 0.00 32.09 3.84
1834 4031 1.378531 CATCAACCCCACATACACGG 58.621 55.000 0.00 0.00 0.00 4.94
1901 4099 0.320771 TCTTGTCCTCGCCAAGAAGC 60.321 55.000 0.62 0.00 43.87 3.86
1912 4110 1.952367 GCCAAGAAGCAGTAGCCACAT 60.952 52.381 0.00 0.00 43.56 3.21
1941 4139 0.753867 TGGCTGACCTTGACGTAACA 59.246 50.000 0.00 0.00 36.63 2.41
1959 4157 4.752514 GGCATACCTGGACGCTAC 57.247 61.111 0.00 0.00 0.00 3.58
1960 4158 1.069258 GGCATACCTGGACGCTACC 59.931 63.158 0.00 0.00 0.00 3.18
1961 4159 1.069258 GCATACCTGGACGCTACCC 59.931 63.158 0.00 0.00 0.00 3.69
1962 4160 1.682451 GCATACCTGGACGCTACCCA 61.682 60.000 0.00 0.00 0.00 4.51
1963 4161 0.104304 CATACCTGGACGCTACCCAC 59.896 60.000 0.00 0.00 0.00 4.61
1964 4162 0.324923 ATACCTGGACGCTACCCACA 60.325 55.000 0.00 0.00 0.00 4.17
1965 4163 1.252904 TACCTGGACGCTACCCACAC 61.253 60.000 0.00 0.00 0.00 3.82
1966 4164 2.579657 CCTGGACGCTACCCACACA 61.580 63.158 0.00 0.00 0.00 3.72
2017 4215 0.457337 GACGTTACCCACAGGCGTAG 60.457 60.000 0.00 0.00 35.86 3.51
2064 4262 0.661020 ACTCGTTTTCCTGGTTTGCG 59.339 50.000 0.00 0.00 0.00 4.85
2096 4294 8.031277 CCAAGTTTTCCTTATCCTGAGATTTTG 58.969 37.037 0.00 0.00 33.67 2.44
2224 4422 2.765689 ATCCAAACAACCAAGGGTCA 57.234 45.000 0.00 0.00 33.12 4.02
2225 4423 2.065899 TCCAAACAACCAAGGGTCAG 57.934 50.000 0.00 0.00 33.12 3.51
2226 4424 1.566703 TCCAAACAACCAAGGGTCAGA 59.433 47.619 0.00 0.00 33.12 3.27
2227 4425 2.176798 TCCAAACAACCAAGGGTCAGAT 59.823 45.455 0.00 0.00 33.12 2.90
2228 4426 2.558359 CCAAACAACCAAGGGTCAGATC 59.442 50.000 0.00 0.00 33.12 2.75
2229 4427 3.221771 CAAACAACCAAGGGTCAGATCA 58.778 45.455 0.00 0.00 33.12 2.92
2230 4428 3.593442 AACAACCAAGGGTCAGATCAA 57.407 42.857 0.00 0.00 33.12 2.57
2231 4429 3.814504 ACAACCAAGGGTCAGATCAAT 57.185 42.857 0.00 0.00 33.12 2.57
2232 4430 4.927267 ACAACCAAGGGTCAGATCAATA 57.073 40.909 0.00 0.00 33.12 1.90
2233 4431 4.589908 ACAACCAAGGGTCAGATCAATAC 58.410 43.478 0.00 0.00 33.12 1.89
2234 4432 4.042809 ACAACCAAGGGTCAGATCAATACA 59.957 41.667 0.00 0.00 33.12 2.29
2235 4433 5.195940 CAACCAAGGGTCAGATCAATACAT 58.804 41.667 0.00 0.00 33.12 2.29
2236 4434 6.069673 ACAACCAAGGGTCAGATCAATACATA 60.070 38.462 0.00 0.00 33.12 2.29
2237 4435 6.179906 ACCAAGGGTCAGATCAATACATAG 57.820 41.667 0.00 0.00 0.00 2.23
2238 4436 5.072329 ACCAAGGGTCAGATCAATACATAGG 59.928 44.000 0.00 0.00 0.00 2.57
2239 4437 5.307976 CCAAGGGTCAGATCAATACATAGGA 59.692 44.000 0.00 0.00 0.00 2.94
2240 4438 6.183361 CCAAGGGTCAGATCAATACATAGGAA 60.183 42.308 0.00 0.00 0.00 3.36
2241 4439 7.282585 CAAGGGTCAGATCAATACATAGGAAA 58.717 38.462 0.00 0.00 0.00 3.13
2242 4440 7.639062 AGGGTCAGATCAATACATAGGAAAT 57.361 36.000 0.00 0.00 0.00 2.17
2243 4441 7.684529 AGGGTCAGATCAATACATAGGAAATC 58.315 38.462 0.00 0.00 0.00 2.17
2244 4442 6.591834 GGGTCAGATCAATACATAGGAAATCG 59.408 42.308 0.00 0.00 0.00 3.34
2245 4443 7.155328 GGTCAGATCAATACATAGGAAATCGT 58.845 38.462 0.00 0.00 0.00 3.73
2246 4444 8.304596 GGTCAGATCAATACATAGGAAATCGTA 58.695 37.037 0.00 0.00 0.00 3.43
2247 4445 9.862371 GTCAGATCAATACATAGGAAATCGTAT 57.138 33.333 0.00 0.00 0.00 3.06
2251 4449 9.250624 GATCAATACATAGGAAATCGTATAGGC 57.749 37.037 0.00 0.00 0.00 3.93
2252 4450 7.255569 TCAATACATAGGAAATCGTATAGGCG 58.744 38.462 0.00 0.00 0.00 5.52
2253 4451 6.770746 ATACATAGGAAATCGTATAGGCGT 57.229 37.500 0.00 0.00 0.00 5.68
2254 4452 5.056894 ACATAGGAAATCGTATAGGCGTC 57.943 43.478 0.00 0.00 0.00 5.19
2255 4453 4.082354 ACATAGGAAATCGTATAGGCGTCC 60.082 45.833 0.00 0.00 0.00 4.79
2256 4454 2.595238 AGGAAATCGTATAGGCGTCCT 58.405 47.619 3.87 3.87 37.71 3.85
2257 4455 2.296471 AGGAAATCGTATAGGCGTCCTG 59.704 50.000 8.44 0.00 34.84 3.86
2258 4456 2.035576 GGAAATCGTATAGGCGTCCTGT 59.964 50.000 8.44 4.78 34.61 4.00
2259 4457 3.492137 GGAAATCGTATAGGCGTCCTGTT 60.492 47.826 8.44 0.01 34.61 3.16
2260 4458 3.814005 AATCGTATAGGCGTCCTGTTT 57.186 42.857 8.44 0.00 34.61 2.83
2261 4459 3.814005 ATCGTATAGGCGTCCTGTTTT 57.186 42.857 8.44 0.00 34.61 2.43
2262 4460 3.598019 TCGTATAGGCGTCCTGTTTTT 57.402 42.857 8.44 0.00 34.61 1.94
2263 4461 3.514645 TCGTATAGGCGTCCTGTTTTTC 58.485 45.455 8.44 0.00 34.61 2.29
2264 4462 3.194116 TCGTATAGGCGTCCTGTTTTTCT 59.806 43.478 8.44 0.00 34.61 2.52
2265 4463 3.930848 CGTATAGGCGTCCTGTTTTTCTT 59.069 43.478 8.44 0.00 34.61 2.52
2266 4464 4.032558 CGTATAGGCGTCCTGTTTTTCTTC 59.967 45.833 8.44 0.00 34.61 2.87
2267 4465 2.640316 AGGCGTCCTGTTTTTCTTCT 57.360 45.000 0.00 0.00 29.57 2.85
2315 4513 2.890474 GCACCCTGTACCGATGCG 60.890 66.667 0.00 0.00 0.00 4.73
2653 4853 1.039785 TCTCTGAGCACCTGGATCCG 61.040 60.000 7.39 1.76 0.00 4.18
2660 4860 2.285368 ACCTGGATCCGGGCAAGA 60.285 61.111 35.81 2.22 46.14 3.02
2803 5033 2.520069 CTCTGGGCTCCATACGTCTAT 58.480 52.381 0.00 0.00 30.82 1.98
3069 5305 1.105167 TCCGAGAACACACAGACGGT 61.105 55.000 0.00 0.00 40.93 4.83
3118 5354 8.535335 GGTGTATACATACAAGGAGATGATGAT 58.465 37.037 9.18 0.00 44.11 2.45
3133 5372 7.364851 GGAGATGATGATACAGATGATGATGGT 60.365 40.741 0.00 0.00 0.00 3.55
3466 5709 1.618837 GTGCTCTCTGTTGGACTACCA 59.381 52.381 0.00 0.00 45.34 3.25
3545 5788 8.355913 TCATCATTGTGTTTGTTTGCATTACTA 58.644 29.630 0.00 0.00 0.00 1.82
3689 6024 2.574399 GACTCTCCCGTGGTGCTC 59.426 66.667 0.00 0.00 0.00 4.26
3690 6025 2.203640 ACTCTCCCGTGGTGCTCA 60.204 61.111 0.00 0.00 0.00 4.26
3691 6026 2.219325 GACTCTCCCGTGGTGCTCAG 62.219 65.000 0.00 0.00 0.00 3.35
3692 6027 3.655810 CTCTCCCGTGGTGCTCAGC 62.656 68.421 0.00 0.00 0.00 4.26
3693 6028 3.699894 CTCCCGTGGTGCTCAGCT 61.700 66.667 0.00 0.00 0.00 4.24
3694 6029 3.241530 TCCCGTGGTGCTCAGCTT 61.242 61.111 0.00 0.00 0.00 3.74
3695 6030 3.052082 CCCGTGGTGCTCAGCTTG 61.052 66.667 0.00 0.00 0.00 4.01
3696 6031 2.281070 CCGTGGTGCTCAGCTTGT 60.281 61.111 0.00 0.00 0.00 3.16
3697 6032 1.893808 CCGTGGTGCTCAGCTTGTT 60.894 57.895 0.00 0.00 0.00 2.83
3698 6033 1.447317 CCGTGGTGCTCAGCTTGTTT 61.447 55.000 0.00 0.00 0.00 2.83
3721 6056 9.674824 GTTTCTTCTATCAAAATATGCCATCAG 57.325 33.333 0.00 0.00 0.00 2.90
3739 6074 1.561542 CAGGGGCTAGTTCTGATTGGT 59.438 52.381 0.00 0.00 0.00 3.67
3747 6082 4.691216 GCTAGTTCTGATTGGTCTCGTTTT 59.309 41.667 0.00 0.00 0.00 2.43
3942 6282 2.220653 ACATGGCCAAAGTATGTGCT 57.779 45.000 10.96 0.00 34.04 4.40
3954 6294 4.473477 AGTATGTGCTGTCTAACTTCCC 57.527 45.455 0.00 0.00 0.00 3.97
4288 6628 7.656412 TGTGCAGCAATTTTCTATCTGTAAAA 58.344 30.769 0.00 0.00 0.00 1.52
4342 6682 1.211457 GACCCAGCTGTCCAGATCAAT 59.789 52.381 13.81 0.00 0.00 2.57
4469 6809 4.406972 AGCATGCTCTGGTCTTATCTTACA 59.593 41.667 16.30 0.00 0.00 2.41
4481 6821 6.472808 GGTCTTATCTTACAACACTGACGATC 59.527 42.308 0.00 0.00 0.00 3.69
4630 6970 4.864334 CCATGCACGGAGCCTCCC 62.864 72.222 4.85 0.00 44.83 4.30
4730 7070 0.670162 CGATGGATCCAAATGGGTGC 59.330 55.000 20.67 0.00 37.15 5.01
4825 7165 2.882137 TGACAATTCCTTCGTGGTTTCC 59.118 45.455 0.00 0.00 37.07 3.13
4858 7198 4.099573 ACAGGTTCGATCCTTATGTTCGAT 59.900 41.667 12.50 0.00 42.87 3.59
4880 7220 1.809869 CGTTCCGAGAGATGGAGCA 59.190 57.895 0.00 0.00 36.61 4.26
5014 7354 2.034305 GGTTGATCAGCAAGATGATGGC 59.966 50.000 11.93 0.00 40.02 4.40
5026 7366 0.627451 ATGATGGCAAGGAGCTTGGA 59.373 50.000 0.00 0.00 41.31 3.53
5066 10948 1.287730 CTCGTGGCAGTTGTCAGAGC 61.288 60.000 0.00 0.00 0.00 4.09
5137 11019 2.947652 CAAGATCCCTGATGCGATTGTT 59.052 45.455 0.00 0.00 0.00 2.83
5189 11071 5.241403 TCTCACTTCATTGCTCCCTTTTA 57.759 39.130 0.00 0.00 0.00 1.52
5225 11113 9.141400 ACTTCGTTAGTTCTTGAAAGACATATC 57.859 33.333 0.00 0.00 34.13 1.63
5226 11114 7.736031 TCGTTAGTTCTTGAAAGACATATCG 57.264 36.000 0.00 1.37 34.13 2.92
5227 11115 7.310664 TCGTTAGTTCTTGAAAGACATATCGT 58.689 34.615 0.00 0.00 34.13 3.73
5228 11116 7.811236 TCGTTAGTTCTTGAAAGACATATCGTT 59.189 33.333 0.00 0.00 34.13 3.85
5229 11117 7.893236 CGTTAGTTCTTGAAAGACATATCGTTG 59.107 37.037 0.00 0.00 34.13 4.10
5230 11118 8.709646 GTTAGTTCTTGAAAGACATATCGTTGT 58.290 33.333 0.00 0.00 34.13 3.32
5362 11250 3.938963 GGTGAAGACTGAAAGAACACACA 59.061 43.478 0.00 0.00 37.43 3.72
5365 11253 4.870426 TGAAGACTGAAAGAACACACAGAC 59.130 41.667 0.00 0.00 37.43 3.51
5489 11379 4.040047 TCTTCTTGATCTCTAATGCCCCA 58.960 43.478 0.00 0.00 0.00 4.96
5498 11388 2.103094 CTCTAATGCCCCATGAAGTCGA 59.897 50.000 0.00 0.00 0.00 4.20
5508 11398 2.048127 GAAGTCGACCGCCTTGCT 60.048 61.111 13.01 0.00 0.00 3.91
5534 11424 6.765989 TGTGTTCACAAAAGCACTATCTTAGT 59.234 34.615 2.99 0.00 40.28 2.24
5581 11479 5.440610 CCTATCTTGGCTTTCCACTTGTAT 58.559 41.667 0.00 0.00 43.33 2.29
5585 11483 5.815581 TCTTGGCTTTCCACTTGTATGTAT 58.184 37.500 0.00 0.00 43.33 2.29
5588 11486 6.056090 TGGCTTTCCACTTGTATGTATGTA 57.944 37.500 0.00 0.00 37.47 2.29
5684 11603 6.620877 TTCTGCTCCAAAATACTTCCTCTA 57.379 37.500 0.00 0.00 0.00 2.43
5686 11605 5.099042 TGCTCCAAAATACTTCCTCTACC 57.901 43.478 0.00 0.00 0.00 3.18
5717 11636 4.720530 AAGACGTTTTTATCACCACGAC 57.279 40.909 0.00 0.00 36.48 4.34
5773 11692 4.817318 AAGCTTTTCAGGTTTGACCAAA 57.183 36.364 0.00 0.00 41.95 3.28
5774 11693 4.935205 AAAGCTTTTCAGGTTTGACCAAAC 59.065 37.500 15.19 15.19 46.72 2.93
5960 11879 1.919240 AATTTTGGAACGGAGGGACC 58.081 50.000 0.00 0.00 0.00 4.46
5964 11883 1.057851 TTGGAACGGAGGGACCAAGT 61.058 55.000 0.00 0.00 37.46 3.16
5976 11895 1.555075 GGACCAAGTGCATCTCCAGTA 59.445 52.381 0.00 0.00 0.00 2.74
5984 11903 1.630369 TGCATCTCCAGTATATGCCCC 59.370 52.381 0.00 0.00 44.26 5.80
5985 11904 1.630369 GCATCTCCAGTATATGCCCCA 59.370 52.381 0.00 0.00 40.06 4.96
5987 11906 3.308688 GCATCTCCAGTATATGCCCCATT 60.309 47.826 0.00 0.00 40.06 3.16
5989 11908 2.912956 TCTCCAGTATATGCCCCATTCC 59.087 50.000 0.00 0.00 0.00 3.01
5990 11909 1.628340 TCCAGTATATGCCCCATTCCG 59.372 52.381 0.00 0.00 0.00 4.30
5991 11910 1.453155 CAGTATATGCCCCATTCCGC 58.547 55.000 0.00 0.00 0.00 5.54
5992 11911 0.328258 AGTATATGCCCCATTCCGCC 59.672 55.000 0.00 0.00 0.00 6.13
5998 11917 2.603008 CCCCATTCCGCCTCCATT 59.397 61.111 0.00 0.00 0.00 3.16
5999 11918 1.076044 CCCCATTCCGCCTCCATTT 60.076 57.895 0.00 0.00 0.00 2.32
6000 11919 1.394266 CCCCATTCCGCCTCCATTTG 61.394 60.000 0.00 0.00 0.00 2.32
6001 11920 0.684153 CCCATTCCGCCTCCATTTGT 60.684 55.000 0.00 0.00 0.00 2.83
6002 11921 0.740737 CCATTCCGCCTCCATTTGTC 59.259 55.000 0.00 0.00 0.00 3.18
6003 11922 1.462616 CATTCCGCCTCCATTTGTCA 58.537 50.000 0.00 0.00 0.00 3.58
6004 11923 1.402968 CATTCCGCCTCCATTTGTCAG 59.597 52.381 0.00 0.00 0.00 3.51
6005 11924 0.322456 TTCCGCCTCCATTTGTCAGG 60.322 55.000 0.00 0.00 0.00 3.86
6006 11925 1.750399 CCGCCTCCATTTGTCAGGG 60.750 63.158 0.00 0.00 0.00 4.45
6007 11926 1.750399 CGCCTCCATTTGTCAGGGG 60.750 63.158 0.00 0.00 34.26 4.79
6008 11927 2.054453 GCCTCCATTTGTCAGGGGC 61.054 63.158 0.00 0.00 35.23 5.80
6009 11928 1.693640 CCTCCATTTGTCAGGGGCT 59.306 57.895 0.00 0.00 0.00 5.19
6010 11929 0.682209 CCTCCATTTGTCAGGGGCTG 60.682 60.000 0.00 0.00 0.00 4.85
6011 11930 0.038744 CTCCATTTGTCAGGGGCTGT 59.961 55.000 0.00 0.00 32.61 4.40
6012 11931 0.482446 TCCATTTGTCAGGGGCTGTT 59.518 50.000 0.00 0.00 32.61 3.16
6013 11932 0.890683 CCATTTGTCAGGGGCTGTTC 59.109 55.000 0.00 0.00 32.61 3.18
6014 11933 1.619654 CATTTGTCAGGGGCTGTTCA 58.380 50.000 0.00 0.00 32.61 3.18
6015 11934 1.542915 CATTTGTCAGGGGCTGTTCAG 59.457 52.381 0.00 0.00 32.61 3.02
6056 11975 5.395611 ACAACCTCCTATACTTAGGCTAGG 58.604 45.833 1.57 1.57 44.20 3.02
6057 11976 5.135705 ACAACCTCCTATACTTAGGCTAGGA 59.864 44.000 10.97 5.97 44.20 2.94
6058 11977 6.183361 ACAACCTCCTATACTTAGGCTAGGAT 60.183 42.308 10.97 2.63 44.20 3.24
6059 11978 7.019356 ACAACCTCCTATACTTAGGCTAGGATA 59.981 40.741 10.97 3.63 44.20 2.59
6060 11979 7.215743 ACCTCCTATACTTAGGCTAGGATAG 57.784 44.000 10.97 12.02 44.20 2.08
6061 11980 6.741441 ACCTCCTATACTTAGGCTAGGATAGT 59.259 42.308 10.97 6.26 44.20 2.12
6062 11981 7.092309 ACCTCCTATACTTAGGCTAGGATAGTC 60.092 44.444 10.97 0.00 45.65 2.59
6076 11995 3.054287 AGGATAGTCTCGACTGTCTGGAA 60.054 47.826 18.91 0.00 45.32 3.53
6086 12005 5.989477 TCGACTGTCTGGAATTCCATAATT 58.011 37.500 27.20 11.06 46.46 1.40
6087 12006 7.069455 TCTCGACTGTCTGGAATTCCATAATTA 59.931 37.037 27.20 11.33 46.46 1.40
6088 12007 7.561251 TCGACTGTCTGGAATTCCATAATTAA 58.439 34.615 27.20 9.43 46.46 1.40
6090 12009 7.279981 CGACTGTCTGGAATTCCATAATTAACA 59.720 37.037 27.20 20.00 46.46 2.41
6091 12010 8.877864 ACTGTCTGGAATTCCATAATTAACAA 57.122 30.769 27.20 0.54 46.46 2.83
6092 12011 8.739972 ACTGTCTGGAATTCCATAATTAACAAC 58.260 33.333 27.20 13.55 46.46 3.32
6093 12012 8.642935 TGTCTGGAATTCCATAATTAACAACA 57.357 30.769 27.20 15.54 46.46 3.33
6094 12013 9.083422 TGTCTGGAATTCCATAATTAACAACAA 57.917 29.630 27.20 0.00 46.46 2.83
6118 12037 9.688592 CAATCAAATTCTCTATTCCCAAATAGC 57.311 33.333 1.18 0.00 42.75 2.97
6119 12038 9.652114 AATCAAATTCTCTATTCCCAAATAGCT 57.348 29.630 0.00 0.00 42.75 3.32
6124 12043 9.732130 AATTCTCTATTCCCAAATAGCTATGAC 57.268 33.333 7.09 0.00 42.75 3.06
6125 12044 7.246171 TCTCTATTCCCAAATAGCTATGACC 57.754 40.000 7.09 0.00 42.75 4.02
6126 12045 6.213600 TCTCTATTCCCAAATAGCTATGACCC 59.786 42.308 7.09 0.00 42.75 4.46
6127 12046 3.485463 TTCCCAAATAGCTATGACCCG 57.515 47.619 7.09 0.00 0.00 5.28
6128 12047 1.071699 TCCCAAATAGCTATGACCCGC 59.928 52.381 7.09 0.00 0.00 6.13
6129 12048 1.072331 CCCAAATAGCTATGACCCGCT 59.928 52.381 7.09 0.00 40.15 5.52
6130 12049 2.301870 CCCAAATAGCTATGACCCGCTA 59.698 50.000 7.09 0.00 42.33 4.26
6131 12050 3.326747 CCAAATAGCTATGACCCGCTAC 58.673 50.000 7.09 0.00 41.10 3.58
6132 12051 3.326747 CAAATAGCTATGACCCGCTACC 58.673 50.000 7.09 0.00 41.10 3.18
6135 12054 2.376695 AGCTATGACCCGCTACCTAA 57.623 50.000 0.00 0.00 34.11 2.69
6136 12055 2.890814 AGCTATGACCCGCTACCTAAT 58.109 47.619 0.00 0.00 34.11 1.73
6137 12056 3.240302 AGCTATGACCCGCTACCTAATT 58.760 45.455 0.00 0.00 34.11 1.40
6138 12057 3.646637 AGCTATGACCCGCTACCTAATTT 59.353 43.478 0.00 0.00 34.11 1.82
6139 12058 4.102681 AGCTATGACCCGCTACCTAATTTT 59.897 41.667 0.00 0.00 34.11 1.82
6140 12059 4.820173 GCTATGACCCGCTACCTAATTTTT 59.180 41.667 0.00 0.00 0.00 1.94
6141 12060 5.993441 GCTATGACCCGCTACCTAATTTTTA 59.007 40.000 0.00 0.00 0.00 1.52
6143 12062 7.820872 GCTATGACCCGCTACCTAATTTTTATA 59.179 37.037 0.00 0.00 0.00 0.98
6144 12063 9.715121 CTATGACCCGCTACCTAATTTTTATAA 57.285 33.333 0.00 0.00 0.00 0.98
6145 12064 8.617290 ATGACCCGCTACCTAATTTTTATAAG 57.383 34.615 0.00 0.00 0.00 1.73
6146 12065 6.484308 TGACCCGCTACCTAATTTTTATAAGC 59.516 38.462 0.00 0.00 0.00 3.09
6147 12066 6.358991 ACCCGCTACCTAATTTTTATAAGCA 58.641 36.000 0.00 0.00 0.00 3.91
6148 12067 7.002276 ACCCGCTACCTAATTTTTATAAGCAT 58.998 34.615 0.00 0.00 0.00 3.79
6149 12068 7.040686 ACCCGCTACCTAATTTTTATAAGCATG 60.041 37.037 0.00 0.00 0.00 4.06
6150 12069 7.040686 CCCGCTACCTAATTTTTATAAGCATGT 60.041 37.037 0.00 0.00 0.00 3.21
6151 12070 8.995220 CCGCTACCTAATTTTTATAAGCATGTA 58.005 33.333 0.00 0.00 0.00 2.29
6169 12088 5.861725 CATGTAGTCATGTCATGTCAACAC 58.138 41.667 12.54 3.38 44.37 3.32
6170 12089 4.314961 TGTAGTCATGTCATGTCAACACC 58.685 43.478 12.54 0.35 0.00 4.16
6172 12091 4.890158 AGTCATGTCATGTCAACACCTA 57.110 40.909 12.54 0.00 0.00 3.08
6173 12092 5.426689 AGTCATGTCATGTCAACACCTAT 57.573 39.130 12.54 0.00 0.00 2.57
6174 12093 5.181009 AGTCATGTCATGTCAACACCTATG 58.819 41.667 12.54 0.00 0.00 2.23
6175 12094 3.940852 TCATGTCATGTCAACACCTATGC 59.059 43.478 12.54 0.00 0.00 3.14
6177 12096 3.954200 TGTCATGTCAACACCTATGCAT 58.046 40.909 3.79 3.79 0.00 3.96
6178 12097 3.690628 TGTCATGTCAACACCTATGCATG 59.309 43.478 10.16 0.00 35.51 4.06
6179 12098 3.691118 GTCATGTCAACACCTATGCATGT 59.309 43.478 10.16 0.00 35.60 3.21
6180 12099 4.156556 GTCATGTCAACACCTATGCATGTT 59.843 41.667 10.16 3.16 39.63 2.71
6181 12100 5.353956 GTCATGTCAACACCTATGCATGTTA 59.646 40.000 10.16 0.00 36.92 2.41
6182 12101 5.942826 TCATGTCAACACCTATGCATGTTAA 59.057 36.000 10.16 0.00 36.92 2.01
6183 12102 6.602803 TCATGTCAACACCTATGCATGTTAAT 59.397 34.615 10.16 0.00 36.92 1.40
6184 12103 6.435430 TGTCAACACCTATGCATGTTAATC 57.565 37.500 10.16 1.62 36.92 1.75
6186 12105 6.602803 TGTCAACACCTATGCATGTTAATCAT 59.397 34.615 10.16 0.00 36.92 2.45
6187 12106 7.772757 TGTCAACACCTATGCATGTTAATCATA 59.227 33.333 10.16 0.00 36.92 2.15
6188 12107 8.620416 GTCAACACCTATGCATGTTAATCATAA 58.380 33.333 10.16 0.00 36.92 1.90
6189 12108 8.839343 TCAACACCTATGCATGTTAATCATAAG 58.161 33.333 10.16 0.00 36.92 1.73
6191 12110 8.752005 ACACCTATGCATGTTAATCATAAGTT 57.248 30.769 10.16 0.00 34.67 2.66
6192 12111 9.845740 ACACCTATGCATGTTAATCATAAGTTA 57.154 29.630 10.16 0.00 34.67 2.24
6229 12186 6.210385 TGCAACCTAATTTTCCTAAGCATGAA 59.790 34.615 0.00 0.00 0.00 2.57
6230 12187 6.753744 GCAACCTAATTTTCCTAAGCATGAAG 59.246 38.462 0.00 0.00 0.00 3.02
6231 12188 6.456795 ACCTAATTTTCCTAAGCATGAAGC 57.543 37.500 0.00 0.00 46.19 3.86
6268 12225 4.100707 TGCACTTCAATCATTAGCAAGC 57.899 40.909 0.00 0.00 0.00 4.01
6270 12227 3.426695 GCACTTCAATCATTAGCAAGCGT 60.427 43.478 0.00 0.00 0.00 5.07
6306 12263 1.837439 TCTCGTCCATGTAAGCCCAAT 59.163 47.619 0.00 0.00 0.00 3.16
6328 12285 3.947196 TGAAATAGCATAGCCCACTTGTG 59.053 43.478 0.00 0.00 0.00 3.33
6329 12286 3.652057 AATAGCATAGCCCACTTGTGT 57.348 42.857 0.00 0.00 0.00 3.72
6330 12287 2.401583 TAGCATAGCCCACTTGTGTG 57.598 50.000 0.00 0.00 43.45 3.82
6331 12288 0.401738 AGCATAGCCCACTTGTGTGT 59.598 50.000 0.00 0.00 42.34 3.72
6332 12289 0.523072 GCATAGCCCACTTGTGTGTG 59.477 55.000 0.00 0.00 42.34 3.82
6333 12290 1.896220 CATAGCCCACTTGTGTGTGT 58.104 50.000 0.00 0.00 42.34 3.72
6334 12291 1.806542 CATAGCCCACTTGTGTGTGTC 59.193 52.381 0.00 0.00 42.34 3.67
6335 12292 0.249699 TAGCCCACTTGTGTGTGTCG 60.250 55.000 0.00 0.00 42.34 4.35
6336 12293 1.817941 GCCCACTTGTGTGTGTCGT 60.818 57.895 0.00 0.00 42.34 4.34
6337 12294 0.531090 GCCCACTTGTGTGTGTCGTA 60.531 55.000 0.00 0.00 42.34 3.43
6338 12295 1.876416 GCCCACTTGTGTGTGTCGTAT 60.876 52.381 0.00 0.00 42.34 3.06
6339 12296 2.489971 CCCACTTGTGTGTGTCGTATT 58.510 47.619 0.00 0.00 42.34 1.89
6340 12297 2.223144 CCCACTTGTGTGTGTCGTATTG 59.777 50.000 0.00 0.00 42.34 1.90
6341 12298 2.223144 CCACTTGTGTGTGTCGTATTGG 59.777 50.000 0.00 0.00 42.34 3.16
6342 12299 2.223144 CACTTGTGTGTGTCGTATTGGG 59.777 50.000 0.00 0.00 39.24 4.12
6343 12300 2.158871 ACTTGTGTGTGTCGTATTGGGT 60.159 45.455 0.00 0.00 0.00 4.51
6344 12301 2.157834 TGTGTGTGTCGTATTGGGTC 57.842 50.000 0.00 0.00 0.00 4.46
6345 12302 1.689813 TGTGTGTGTCGTATTGGGTCT 59.310 47.619 0.00 0.00 0.00 3.85
6372 12329 3.185797 CGTGTTTGTGAGGTTAAGTAGCC 59.814 47.826 0.00 0.00 0.00 3.93
6380 12337 0.794473 GGTTAAGTAGCCGTGCACAC 59.206 55.000 18.64 8.30 0.00 3.82
6432 12392 6.976934 AAAGTGATTGGGTGAACAAACTAT 57.023 33.333 0.00 0.00 33.48 2.12
6443 12403 8.000127 TGGGTGAACAAACTATAACCTTAAACT 59.000 33.333 0.00 0.00 0.00 2.66
6444 12404 8.509690 GGGTGAACAAACTATAACCTTAAACTC 58.490 37.037 0.00 0.00 0.00 3.01
6447 12407 8.981647 TGAACAAACTATAACCTTAAACTCGAC 58.018 33.333 0.00 0.00 0.00 4.20
6473 12433 3.296322 AATTGCCCATGTGTTACAACG 57.704 42.857 0.00 0.00 0.00 4.10
6474 12434 0.955178 TTGCCCATGTGTTACAACGG 59.045 50.000 0.00 0.00 0.00 4.44
6475 12435 1.211709 GCCCATGTGTTACAACGGC 59.788 57.895 6.83 6.83 38.57 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.064388 TCAGCAATCGAGACAACATCAAA 58.936 39.130 0.00 0.00 0.00 2.69
158 159 3.133542 CCACCTTCATGCAGAGATCTACA 59.866 47.826 0.00 0.00 0.00 2.74
222 226 6.265196 TGATGTAAAAATCAGTCTGGCACTTT 59.735 34.615 0.00 0.00 32.75 2.66
264 268 5.964758 AGCTCAGATCAGTAAGTCAGAAAG 58.035 41.667 0.00 0.00 0.00 2.62
270 1681 8.410141 ACACTAATAAGCTCAGATCAGTAAGTC 58.590 37.037 0.00 0.00 0.00 3.01
279 1690 8.854614 AAGAAAACACACTAATAAGCTCAGAT 57.145 30.769 0.00 0.00 0.00 2.90
335 1746 4.290155 CAGTGTTGCACATGAGTTAAACC 58.710 43.478 0.00 0.00 36.74 3.27
390 1802 2.105477 AGGCGGCAAAGTCTGATGATAT 59.895 45.455 13.08 0.00 0.00 1.63
419 1831 9.862585 GATTGTTGAAAAATGATGGTAAAACAC 57.137 29.630 0.00 0.00 0.00 3.32
420 1832 9.829507 AGATTGTTGAAAAATGATGGTAAAACA 57.170 25.926 0.00 0.00 0.00 2.83
696 2846 5.725325 ACTAGTTCCAGTTCCAGTCTTAC 57.275 43.478 0.00 0.00 0.00 2.34
721 2871 0.676466 TGCTACTGGTCCGCATTTGG 60.676 55.000 0.00 0.00 0.00 3.28
873 3025 4.948341 TCGCCATGGTAGCTTAGATTTA 57.052 40.909 14.67 0.00 0.00 1.40
874 3026 3.838244 TCGCCATGGTAGCTTAGATTT 57.162 42.857 14.67 0.00 0.00 2.17
892 3044 6.880822 TGGTTCATCGTTCTTAAAGTATCG 57.119 37.500 0.00 0.00 0.00 2.92
912 3064 5.222130 ACCTAGGAGTTCATCAACAAATGGT 60.222 40.000 17.98 0.00 34.60 3.55
945 3097 2.303022 AGATGGCCAATCGTCCGATTAT 59.697 45.455 10.96 5.08 42.30 1.28
1061 3217 4.039092 CACCTGGGGCCTGAGTGG 62.039 72.222 0.84 0.71 39.35 4.00
1099 3255 0.245539 TAGCAGTGGCCGACAAGTAC 59.754 55.000 0.00 0.00 42.56 2.73
1112 3268 5.060427 AGATAGACAGACCTGATAGCAGT 57.940 43.478 7.31 0.00 40.63 4.40
1492 3655 2.358615 TGTGCAGTGGTCGGCATC 60.359 61.111 0.00 0.00 45.20 3.91
1496 3659 2.310233 CGAACTGTGCAGTGGTCGG 61.310 63.158 15.92 0.00 41.58 4.79
1533 3696 4.832608 GTCCGTGATGGGCCCGTC 62.833 72.222 33.84 33.84 35.79 4.79
1535 3698 2.802724 TATGTCCGTGATGGGCCCG 61.803 63.158 19.37 3.98 43.96 6.13
1536 3699 1.227853 GTATGTCCGTGATGGGCCC 60.228 63.158 17.59 17.59 43.96 5.80
1537 3700 0.108585 ATGTATGTCCGTGATGGGCC 59.891 55.000 0.00 0.00 43.96 5.80
1538 3701 2.299013 TCTATGTATGTCCGTGATGGGC 59.701 50.000 0.00 0.00 45.24 5.36
1539 3702 3.615110 GCTCTATGTATGTCCGTGATGGG 60.615 52.174 0.00 0.00 38.76 4.00
1648 3812 3.071206 TCCTCGGCTCTCAGTGGC 61.071 66.667 0.00 0.00 0.00 5.01
1901 4099 0.904649 TCCAGGTGATGTGGCTACTG 59.095 55.000 0.64 0.00 34.77 2.74
1912 4110 0.842030 AGGTCAGCCATTCCAGGTGA 60.842 55.000 0.00 0.00 39.31 4.02
1958 4156 2.510906 GTCAGCCTGTGTGTGGGT 59.489 61.111 0.00 0.00 35.45 4.51
1959 4157 2.281761 GGTCAGCCTGTGTGTGGG 60.282 66.667 0.00 0.00 0.00 4.61
1960 4158 1.149174 AAGGTCAGCCTGTGTGTGG 59.851 57.895 0.00 0.00 46.33 4.17
1961 4159 0.179048 TCAAGGTCAGCCTGTGTGTG 60.179 55.000 0.00 0.00 46.33 3.82
1962 4160 0.179045 GTCAAGGTCAGCCTGTGTGT 60.179 55.000 0.00 0.00 46.33 3.72
1963 4161 1.224069 CGTCAAGGTCAGCCTGTGTG 61.224 60.000 0.00 0.00 46.33 3.82
1964 4162 1.069765 CGTCAAGGTCAGCCTGTGT 59.930 57.895 0.00 0.00 46.33 3.72
1965 4163 0.317160 TACGTCAAGGTCAGCCTGTG 59.683 55.000 0.00 0.00 46.33 3.66
1966 4164 1.045407 TTACGTCAAGGTCAGCCTGT 58.955 50.000 0.00 0.00 46.33 4.00
2017 4215 3.985279 GGAAAACGTCCATAAACCAAAGC 59.015 43.478 0.00 0.00 46.97 3.51
2031 4229 5.503662 AAAACGAGTATTTGGGAAAACGT 57.496 34.783 0.00 0.00 0.00 3.99
2153 4351 3.881089 CCGGGATTTATACCAAACCTGTC 59.119 47.826 0.00 0.00 0.00 3.51
2199 4397 2.553466 CCTTGGTTGTTTGGATACGGGA 60.553 50.000 0.00 0.00 42.51 5.14
2225 4423 9.250624 GCCTATACGATTTCCTATGTATTGATC 57.749 37.037 0.00 0.00 0.00 2.92
2226 4424 7.921214 CGCCTATACGATTTCCTATGTATTGAT 59.079 37.037 0.00 0.00 34.06 2.57
2227 4425 7.094075 ACGCCTATACGATTTCCTATGTATTGA 60.094 37.037 0.00 0.00 36.70 2.57
2228 4426 7.033791 ACGCCTATACGATTTCCTATGTATTG 58.966 38.462 0.00 0.00 36.70 1.90
2229 4427 7.166691 ACGCCTATACGATTTCCTATGTATT 57.833 36.000 0.00 0.00 36.70 1.89
2230 4428 6.183360 GGACGCCTATACGATTTCCTATGTAT 60.183 42.308 0.00 0.00 36.70 2.29
2231 4429 5.124457 GGACGCCTATACGATTTCCTATGTA 59.876 44.000 0.00 0.00 36.70 2.29
2232 4430 4.082354 GGACGCCTATACGATTTCCTATGT 60.082 45.833 0.00 0.00 36.70 2.29
2233 4431 4.158025 AGGACGCCTATACGATTTCCTATG 59.842 45.833 0.00 0.00 35.15 2.23
2234 4432 4.158025 CAGGACGCCTATACGATTTCCTAT 59.842 45.833 0.00 0.00 34.81 2.57
2235 4433 3.504906 CAGGACGCCTATACGATTTCCTA 59.495 47.826 0.00 0.00 34.81 2.94
2236 4434 2.296471 CAGGACGCCTATACGATTTCCT 59.704 50.000 0.00 0.00 36.74 3.36
2237 4435 2.035576 ACAGGACGCCTATACGATTTCC 59.964 50.000 0.00 0.00 36.70 3.13
2238 4436 3.366440 ACAGGACGCCTATACGATTTC 57.634 47.619 0.00 0.00 36.70 2.17
2239 4437 3.814005 AACAGGACGCCTATACGATTT 57.186 42.857 0.00 0.00 36.70 2.17
2240 4438 3.814005 AAACAGGACGCCTATACGATT 57.186 42.857 0.00 0.00 36.70 3.34
2241 4439 3.814005 AAAACAGGACGCCTATACGAT 57.186 42.857 0.00 0.00 36.70 3.73
2242 4440 3.194116 AGAAAAACAGGACGCCTATACGA 59.806 43.478 0.00 0.00 36.70 3.43
2243 4441 3.518590 AGAAAAACAGGACGCCTATACG 58.481 45.455 0.00 0.00 39.50 3.06
2244 4442 5.176592 AGAAGAAAAACAGGACGCCTATAC 58.823 41.667 0.00 0.00 29.64 1.47
2245 4443 5.416271 AGAAGAAAAACAGGACGCCTATA 57.584 39.130 0.00 0.00 29.64 1.31
2246 4444 4.287766 AGAAGAAAAACAGGACGCCTAT 57.712 40.909 0.00 0.00 29.64 2.57
2247 4445 3.764237 AGAAGAAAAACAGGACGCCTA 57.236 42.857 0.00 0.00 29.64 3.93
2248 4446 2.640316 AGAAGAAAAACAGGACGCCT 57.360 45.000 0.00 0.00 0.00 5.52
2249 4447 3.400255 ACTAGAAGAAAAACAGGACGCC 58.600 45.455 0.00 0.00 0.00 5.68
2250 4448 4.056050 TGACTAGAAGAAAAACAGGACGC 58.944 43.478 0.00 0.00 0.00 5.19
2251 4449 4.150804 GCTGACTAGAAGAAAAACAGGACG 59.849 45.833 0.00 0.00 0.00 4.79
2252 4450 4.452795 GGCTGACTAGAAGAAAAACAGGAC 59.547 45.833 0.00 0.00 0.00 3.85
2253 4451 4.642429 GGCTGACTAGAAGAAAAACAGGA 58.358 43.478 0.00 0.00 0.00 3.86
2254 4452 3.433615 CGGCTGACTAGAAGAAAAACAGG 59.566 47.826 0.00 0.00 0.00 4.00
2255 4453 4.150804 GTCGGCTGACTAGAAGAAAAACAG 59.849 45.833 18.76 0.00 42.08 3.16
2256 4454 4.056050 GTCGGCTGACTAGAAGAAAAACA 58.944 43.478 18.76 0.00 42.08 2.83
2257 4455 4.056050 TGTCGGCTGACTAGAAGAAAAAC 58.944 43.478 25.54 0.00 45.70 2.43
2258 4456 4.330944 TGTCGGCTGACTAGAAGAAAAA 57.669 40.909 25.54 0.00 45.70 1.94
2259 4457 4.245660 CATGTCGGCTGACTAGAAGAAAA 58.754 43.478 25.54 3.12 45.70 2.29
2260 4458 3.368427 CCATGTCGGCTGACTAGAAGAAA 60.368 47.826 25.54 3.88 45.70 2.52
2261 4459 2.166459 CCATGTCGGCTGACTAGAAGAA 59.834 50.000 25.54 4.64 45.70 2.52
2262 4460 1.751351 CCATGTCGGCTGACTAGAAGA 59.249 52.381 25.54 5.40 45.70 2.87
2263 4461 1.751351 TCCATGTCGGCTGACTAGAAG 59.249 52.381 25.54 10.58 45.70 2.85
2264 4462 1.751351 CTCCATGTCGGCTGACTAGAA 59.249 52.381 25.54 6.56 45.70 2.10
2265 4463 1.393603 CTCCATGTCGGCTGACTAGA 58.606 55.000 25.54 17.30 45.70 2.43
2266 4464 0.387202 CCTCCATGTCGGCTGACTAG 59.613 60.000 25.54 17.11 45.70 2.57
2267 4465 0.033503 TCCTCCATGTCGGCTGACTA 60.034 55.000 25.54 12.97 45.70 2.59
2530 4728 3.083997 AGGGTGTCGAGGGCATCC 61.084 66.667 0.00 0.00 37.39 3.51
2653 4853 3.119096 GTCGCCGAGTTCTTGCCC 61.119 66.667 0.00 0.00 0.00 5.36
2708 4908 2.821366 CAGCTCGGACATGGTGGC 60.821 66.667 0.00 0.00 0.00 5.01
2803 5033 3.343617 GCACTTGCCTACATACTCCAAA 58.656 45.455 0.00 0.00 34.31 3.28
3052 5282 0.311165 AGACCGTCTGTGTGTTCTCG 59.689 55.000 0.00 0.00 0.00 4.04
3118 5354 1.762370 ACGGCACCATCATCATCTGTA 59.238 47.619 0.00 0.00 0.00 2.74
3133 5372 1.303888 ACGGAGGAAGTAGACGGCA 60.304 57.895 0.00 0.00 0.00 5.69
3466 5709 3.463048 AGGAAGCAGAATTCATGGGTT 57.537 42.857 8.44 8.40 0.00 4.11
3656 5991 3.447040 TCGAAACTCGAACCCGGT 58.553 55.556 0.00 0.00 46.90 5.28
3689 6024 9.017669 GCATATTTTGATAGAAGAAACAAGCTG 57.982 33.333 0.00 0.00 0.00 4.24
3690 6025 8.193438 GGCATATTTTGATAGAAGAAACAAGCT 58.807 33.333 0.00 0.00 0.00 3.74
3691 6026 7.975616 TGGCATATTTTGATAGAAGAAACAAGC 59.024 33.333 0.00 0.00 0.00 4.01
3694 6029 9.187996 TGATGGCATATTTTGATAGAAGAAACA 57.812 29.630 0.00 0.00 0.00 2.83
3695 6030 9.674824 CTGATGGCATATTTTGATAGAAGAAAC 57.325 33.333 0.00 0.00 0.00 2.78
3696 6031 8.853126 CCTGATGGCATATTTTGATAGAAGAAA 58.147 33.333 0.00 0.00 0.00 2.52
3697 6032 7.449395 CCCTGATGGCATATTTTGATAGAAGAA 59.551 37.037 0.00 0.00 0.00 2.52
3698 6033 6.944290 CCCTGATGGCATATTTTGATAGAAGA 59.056 38.462 0.00 0.00 0.00 2.87
3718 6053 1.839994 CCAATCAGAACTAGCCCCTGA 59.160 52.381 10.48 10.48 40.68 3.86
3721 6056 1.840635 AGACCAATCAGAACTAGCCCC 59.159 52.381 0.00 0.00 0.00 5.80
3754 6089 4.275689 TGCATCGTTTCACTTCAGACATTT 59.724 37.500 0.00 0.00 0.00 2.32
3755 6090 3.814842 TGCATCGTTTCACTTCAGACATT 59.185 39.130 0.00 0.00 0.00 2.71
3756 6091 3.402110 TGCATCGTTTCACTTCAGACAT 58.598 40.909 0.00 0.00 0.00 3.06
3903 6241 6.148150 CCATGTTTGTGGGAAAAATCATCAAG 59.852 38.462 0.00 0.00 35.55 3.02
4288 6628 1.619827 TCAAACTCGTAATGTCCCGGT 59.380 47.619 0.00 0.00 0.00 5.28
4342 6682 9.595823 GCTTCGCAAATAATATATAGGTCCTTA 57.404 33.333 0.00 0.00 0.00 2.69
4372 6712 5.336690 GGCAACATACACAATTGTCTGGAAT 60.337 40.000 8.48 0.00 34.79 3.01
4469 6809 4.894784 ACAAGGTAATGATCGTCAGTGTT 58.105 39.130 0.00 0.00 0.00 3.32
4630 6970 1.475403 TAGAGAAAGGGTCAGGAGCG 58.525 55.000 0.00 0.00 0.00 5.03
4743 7083 2.359214 AGAGCAAGATATTCGTCTGCGA 59.641 45.455 0.00 0.00 46.36 5.10
4755 7095 1.065854 CCTTCCCGTTCAGAGCAAGAT 60.066 52.381 0.00 0.00 0.00 2.40
4763 7103 0.396811 AGGTCAACCTTCCCGTTCAG 59.603 55.000 0.00 0.00 46.09 3.02
4783 7123 1.745890 CAGGACCGCATATCCCGAA 59.254 57.895 0.00 0.00 36.86 4.30
4786 7126 2.147387 ACCCAGGACCGCATATCCC 61.147 63.158 0.00 0.00 36.86 3.85
4844 7184 3.735237 ACGCAGATCGAACATAAGGAT 57.265 42.857 0.00 0.00 41.67 3.24
4880 7220 1.509463 CAGAAGCATGCCGCACAAT 59.491 52.632 15.66 0.00 46.13 2.71
4890 7230 2.393768 CCGCACGAAGCAGAAGCAT 61.394 57.895 0.00 0.00 46.13 3.79
4910 7250 1.515521 CTCCCGTTCAACACTTGGGC 61.516 60.000 0.00 0.00 39.82 5.36
4916 7256 2.069273 CACAGATCTCCCGTTCAACAC 58.931 52.381 0.00 0.00 0.00 3.32
5014 7354 1.077858 GGGCTCTCCAAGCTCCTTG 60.078 63.158 0.00 0.00 46.68 3.61
5026 7366 2.604686 TGCAAGAGGACGGGCTCT 60.605 61.111 0.00 0.00 0.00 4.09
5137 11019 1.102154 CACCTTGCACCACACAGAAA 58.898 50.000 0.00 0.00 0.00 2.52
5225 11113 7.452231 AGAAAACACAAAAGCATTAAACAACG 58.548 30.769 0.00 0.00 0.00 4.10
5226 11114 9.683651 GTAGAAAACACAAAAGCATTAAACAAC 57.316 29.630 0.00 0.00 0.00 3.32
5227 11115 9.646427 AGTAGAAAACACAAAAGCATTAAACAA 57.354 25.926 0.00 0.00 0.00 2.83
5362 11250 1.302832 CTGGCCTCCTTTTGCGTCT 60.303 57.895 3.32 0.00 0.00 4.18
5365 11253 1.003355 TCTCTGGCCTCCTTTTGCG 60.003 57.895 3.32 0.00 0.00 4.85
5436 11324 2.116827 AACAACGTTTGGTCCAGACA 57.883 45.000 12.73 0.00 34.12 3.41
5489 11379 1.741770 GCAAGGCGGTCGACTTCAT 60.742 57.895 16.46 2.12 42.42 2.57
5498 11388 1.453015 TGAACACAAGCAAGGCGGT 60.453 52.632 0.00 0.00 0.00 5.68
5508 11398 7.282224 ACTAAGATAGTGCTTTTGTGAACACAA 59.718 33.333 15.04 15.04 42.41 3.33
5618 11519 7.450323 CGGGTTTCATGGGTATAAGGAAATATT 59.550 37.037 0.00 0.00 31.06 1.28
5620 11521 6.300703 CGGGTTTCATGGGTATAAGGAAATA 58.699 40.000 0.00 0.00 31.06 1.40
5640 11549 1.614241 GGACCACATAGTCAGCGGGT 61.614 60.000 0.00 0.00 38.59 5.28
5641 11550 1.144057 GGACCACATAGTCAGCGGG 59.856 63.158 0.00 0.00 38.59 6.13
5712 11631 5.779806 AGAATTTCAATTACTCCGTCGTG 57.220 39.130 0.00 0.00 0.00 4.35
5743 11662 2.760092 ACCTGAAAAGCTTTGTCTTGCA 59.240 40.909 13.54 4.05 0.00 4.08
5745 11664 5.289434 GTCAAACCTGAAAAGCTTTGTCTTG 59.711 40.000 13.54 12.21 31.88 3.02
5960 11879 3.750130 GGCATATACTGGAGATGCACTTG 59.250 47.826 20.10 0.00 46.29 3.16
5964 11883 1.630369 GGGGCATATACTGGAGATGCA 59.370 52.381 20.10 0.00 46.29 3.96
5976 11895 1.380302 GAGGCGGAATGGGGCATAT 59.620 57.895 0.00 0.00 0.00 1.78
5984 11903 1.402968 CTGACAAATGGAGGCGGAATG 59.597 52.381 0.00 0.00 0.00 2.67
5985 11904 1.683011 CCTGACAAATGGAGGCGGAAT 60.683 52.381 0.00 0.00 0.00 3.01
5987 11906 1.299648 CCTGACAAATGGAGGCGGA 59.700 57.895 0.00 0.00 0.00 5.54
5989 11908 1.750399 CCCCTGACAAATGGAGGCG 60.750 63.158 0.00 0.00 0.00 5.52
5990 11909 2.054453 GCCCCTGACAAATGGAGGC 61.054 63.158 0.00 0.00 34.37 4.70
5991 11910 0.682209 CAGCCCCTGACAAATGGAGG 60.682 60.000 0.00 0.00 32.44 4.30
5992 11911 0.038744 ACAGCCCCTGACAAATGGAG 59.961 55.000 0.00 0.00 35.18 3.86
5998 11917 1.455849 CCTGAACAGCCCCTGACAA 59.544 57.895 0.00 0.00 35.18 3.18
5999 11918 3.160585 CCTGAACAGCCCCTGACA 58.839 61.111 0.00 0.00 35.18 3.58
6000 11919 2.360475 GCCTGAACAGCCCCTGAC 60.360 66.667 0.00 0.00 35.18 3.51
6001 11920 3.650950 GGCCTGAACAGCCCCTGA 61.651 66.667 0.00 0.00 45.16 3.86
6056 11975 5.506649 GGAATTCCAGACAGTCGAGACTATC 60.507 48.000 20.04 4.37 36.48 2.08
6057 11976 4.339814 GGAATTCCAGACAGTCGAGACTAT 59.660 45.833 20.04 0.00 36.48 2.12
6058 11977 3.695060 GGAATTCCAGACAGTCGAGACTA 59.305 47.826 20.04 0.00 36.48 2.59
6059 11978 2.494073 GGAATTCCAGACAGTCGAGACT 59.506 50.000 20.04 0.00 37.87 3.24
6060 11979 2.231478 TGGAATTCCAGACAGTCGAGAC 59.769 50.000 23.63 0.00 42.01 3.36
6061 11980 2.525368 TGGAATTCCAGACAGTCGAGA 58.475 47.619 23.63 0.00 42.01 4.04
6086 12005 9.527157 TGGGAATAGAGAATTTGATTGTTGTTA 57.473 29.630 0.00 0.00 0.00 2.41
6087 12006 8.421249 TGGGAATAGAGAATTTGATTGTTGTT 57.579 30.769 0.00 0.00 0.00 2.83
6088 12007 8.421249 TTGGGAATAGAGAATTTGATTGTTGT 57.579 30.769 0.00 0.00 0.00 3.32
6092 12011 9.688592 GCTATTTGGGAATAGAGAATTTGATTG 57.311 33.333 9.67 0.00 44.95 2.67
6093 12012 9.652114 AGCTATTTGGGAATAGAGAATTTGATT 57.348 29.630 9.67 0.00 44.95 2.57
6098 12017 9.732130 GTCATAGCTATTTGGGAATAGAGAATT 57.268 33.333 2.64 0.00 44.95 2.17
6100 12019 7.256691 GGGTCATAGCTATTTGGGAATAGAGAA 60.257 40.741 2.64 0.00 44.95 2.87
6101 12020 6.213600 GGGTCATAGCTATTTGGGAATAGAGA 59.786 42.308 2.64 0.00 44.95 3.10
6102 12021 6.410540 GGGTCATAGCTATTTGGGAATAGAG 58.589 44.000 2.64 0.00 44.95 2.43
6105 12024 4.564821 GCGGGTCATAGCTATTTGGGAATA 60.565 45.833 2.64 0.00 0.00 1.75
6106 12025 3.810743 GCGGGTCATAGCTATTTGGGAAT 60.811 47.826 2.64 0.00 0.00 3.01
6107 12026 2.486548 GCGGGTCATAGCTATTTGGGAA 60.487 50.000 2.64 0.00 0.00 3.97
6108 12027 1.071699 GCGGGTCATAGCTATTTGGGA 59.928 52.381 2.64 0.00 0.00 4.37
6109 12028 1.072331 AGCGGGTCATAGCTATTTGGG 59.928 52.381 2.64 0.00 42.60 4.12
6110 12029 2.550830 AGCGGGTCATAGCTATTTGG 57.449 50.000 2.64 0.00 42.60 3.28
6111 12030 3.006967 AGGTAGCGGGTCATAGCTATTTG 59.993 47.826 2.64 0.00 46.07 2.32
6116 12035 2.376695 TTAGGTAGCGGGTCATAGCT 57.623 50.000 0.00 0.00 46.53 3.32
6117 12036 3.679824 AATTAGGTAGCGGGTCATAGC 57.320 47.619 0.00 0.00 0.00 2.97
6118 12037 9.715121 TTATAAAAATTAGGTAGCGGGTCATAG 57.285 33.333 0.00 0.00 0.00 2.23
6119 12038 9.715121 CTTATAAAAATTAGGTAGCGGGTCATA 57.285 33.333 0.00 0.00 0.00 2.15
6120 12039 7.174426 GCTTATAAAAATTAGGTAGCGGGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
6121 12040 6.484308 GCTTATAAAAATTAGGTAGCGGGTCA 59.516 38.462 0.00 0.00 0.00 4.02
6122 12041 6.484308 TGCTTATAAAAATTAGGTAGCGGGTC 59.516 38.462 0.00 0.00 0.00 4.46
6123 12042 6.358991 TGCTTATAAAAATTAGGTAGCGGGT 58.641 36.000 0.00 0.00 0.00 5.28
6124 12043 6.870971 TGCTTATAAAAATTAGGTAGCGGG 57.129 37.500 0.00 0.00 0.00 6.13
6125 12044 7.871853 ACATGCTTATAAAAATTAGGTAGCGG 58.128 34.615 0.00 0.00 0.00 5.52
6147 12066 4.937620 GGTGTTGACATGACATGACTACAT 59.062 41.667 26.81 6.16 40.72 2.29
6148 12067 4.040339 AGGTGTTGACATGACATGACTACA 59.960 41.667 22.96 22.96 37.99 2.74
6149 12068 4.569943 AGGTGTTGACATGACATGACTAC 58.430 43.478 22.19 20.57 33.31 2.73
6150 12069 4.890158 AGGTGTTGACATGACATGACTA 57.110 40.909 22.19 9.99 0.00 2.59
6151 12070 3.777106 AGGTGTTGACATGACATGACT 57.223 42.857 22.19 0.00 0.00 3.41
6152 12071 4.201851 GCATAGGTGTTGACATGACATGAC 60.202 45.833 22.19 16.03 0.00 3.06
6153 12072 3.940852 GCATAGGTGTTGACATGACATGA 59.059 43.478 22.19 0.00 0.00 3.07
6154 12073 3.690628 TGCATAGGTGTTGACATGACATG 59.309 43.478 14.02 14.02 0.00 3.21
6155 12074 3.954200 TGCATAGGTGTTGACATGACAT 58.046 40.909 0.00 0.00 0.00 3.06
6156 12075 3.415457 TGCATAGGTGTTGACATGACA 57.585 42.857 0.00 0.00 0.00 3.58
6157 12076 3.691118 ACATGCATAGGTGTTGACATGAC 59.309 43.478 0.00 0.00 38.55 3.06
6158 12077 3.954200 ACATGCATAGGTGTTGACATGA 58.046 40.909 0.00 0.00 38.55 3.07
6159 12078 4.707030 AACATGCATAGGTGTTGACATG 57.293 40.909 0.00 0.00 40.48 3.21
6160 12079 6.602803 TGATTAACATGCATAGGTGTTGACAT 59.397 34.615 12.56 3.60 38.84 3.06
6161 12080 5.942826 TGATTAACATGCATAGGTGTTGACA 59.057 36.000 12.56 7.64 38.84 3.58
6162 12081 6.435430 TGATTAACATGCATAGGTGTTGAC 57.565 37.500 12.56 5.63 38.84 3.18
6164 12083 8.623903 ACTTATGATTAACATGCATAGGTGTTG 58.376 33.333 12.56 0.00 38.84 3.33
6165 12084 8.752005 ACTTATGATTAACATGCATAGGTGTT 57.248 30.769 0.00 3.46 41.16 3.32
6166 12085 8.752005 AACTTATGATTAACATGCATAGGTGT 57.248 30.769 0.00 0.00 39.77 4.16
6196 12115 6.060788 AGGAAAATTAGGTTGCATGCAAAAA 58.939 32.000 33.42 25.62 37.70 1.94
6197 12116 5.619220 AGGAAAATTAGGTTGCATGCAAAA 58.381 33.333 33.42 24.07 37.70 2.44
6198 12117 5.226194 AGGAAAATTAGGTTGCATGCAAA 57.774 34.783 33.42 19.22 37.70 3.68
6199 12118 4.888326 AGGAAAATTAGGTTGCATGCAA 57.112 36.364 28.80 28.80 0.00 4.08
6200 12119 5.624281 GCTTAGGAAAATTAGGTTGCATGCA 60.624 40.000 18.46 18.46 0.00 3.96
6202 12121 5.964758 TGCTTAGGAAAATTAGGTTGCATG 58.035 37.500 0.00 0.00 0.00 4.06
6203 12122 6.380846 TCATGCTTAGGAAAATTAGGTTGCAT 59.619 34.615 0.00 0.00 37.83 3.96
6204 12123 5.714333 TCATGCTTAGGAAAATTAGGTTGCA 59.286 36.000 0.00 0.00 0.00 4.08
6206 12125 6.753744 GCTTCATGCTTAGGAAAATTAGGTTG 59.246 38.462 0.00 0.00 38.95 3.77
6207 12126 6.127338 GGCTTCATGCTTAGGAAAATTAGGTT 60.127 38.462 0.00 0.00 42.39 3.50
6208 12127 5.360999 GGCTTCATGCTTAGGAAAATTAGGT 59.639 40.000 0.00 0.00 42.39 3.08
6239 12196 9.123902 TGCTAATGATTGAAGTGCATAACTAAT 57.876 29.630 0.00 0.00 38.56 1.73
6240 12197 8.504812 TGCTAATGATTGAAGTGCATAACTAA 57.495 30.769 0.00 0.00 38.56 2.24
6277 12234 1.381056 ATGGACGAGAGCTGCTCCT 60.381 57.895 25.09 13.03 40.70 3.69
6306 12263 3.947196 CACAAGTGGGCTATGCTATTTCA 59.053 43.478 0.00 0.00 0.00 2.69
6328 12285 1.722011 CCAGACCCAATACGACACAC 58.278 55.000 0.00 0.00 0.00 3.82
6329 12286 0.036765 GCCAGACCCAATACGACACA 60.037 55.000 0.00 0.00 0.00 3.72
6330 12287 0.743345 GGCCAGACCCAATACGACAC 60.743 60.000 0.00 0.00 0.00 3.67
6331 12288 1.600107 GGCCAGACCCAATACGACA 59.400 57.895 0.00 0.00 0.00 4.35
6332 12289 4.534401 GGCCAGACCCAATACGAC 57.466 61.111 0.00 0.00 0.00 4.34
6341 12298 2.203294 ACAAACACGGGCCAGACC 60.203 61.111 10.86 0.00 37.93 3.85
6342 12299 1.507141 CTCACAAACACGGGCCAGAC 61.507 60.000 10.86 0.00 0.00 3.51
6343 12300 1.227823 CTCACAAACACGGGCCAGA 60.228 57.895 10.86 0.00 0.00 3.86
6344 12301 2.260869 CCTCACAAACACGGGCCAG 61.261 63.158 4.39 1.85 0.00 4.85
6345 12302 2.203280 CCTCACAAACACGGGCCA 60.203 61.111 4.39 0.00 0.00 5.36
6380 12337 4.675404 GGTTCACCCAGTCACTCG 57.325 61.111 0.00 0.00 0.00 4.18
6432 12392 9.525409 GCAATTATCTAGTCGAGTTTAAGGTTA 57.475 33.333 0.00 0.00 0.00 2.85
6443 12403 4.100963 ACACATGGGCAATTATCTAGTCGA 59.899 41.667 0.00 0.00 0.00 4.20
6444 12404 4.380531 ACACATGGGCAATTATCTAGTCG 58.619 43.478 0.00 0.00 0.00 4.18
6447 12407 7.417612 GTTGTAACACATGGGCAATTATCTAG 58.582 38.462 0.00 0.00 0.00 2.43
6451 12411 4.142271 CCGTTGTAACACATGGGCAATTAT 60.142 41.667 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.