Multiple sequence alignment - TraesCS1B01G227300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G227300 chr1B 100.000 6281 0 0 1 6281 408621050 408614770 0.000000e+00 11599.0
1 TraesCS1B01G227300 chr1B 89.899 1089 108 2 2722 3810 146771929 146770843 0.000000e+00 1400.0
2 TraesCS1B01G227300 chr1B 92.188 128 7 3 2367 2492 572202565 572202439 1.800000e-40 178.0
3 TraesCS1B01G227300 chr1B 86.395 147 17 3 2353 2498 374020922 374020778 2.340000e-34 158.0
4 TraesCS1B01G227300 chr1B 85.621 153 13 7 2348 2495 674480429 674480281 1.090000e-32 152.0
5 TraesCS1B01G227300 chr1B 91.525 59 1 3 6051 6109 542575362 542575416 1.880000e-10 78.7
6 TraesCS1B01G227300 chr1B 97.368 38 1 0 434 471 408620528 408620491 1.460000e-06 65.8
7 TraesCS1B01G227300 chr1B 97.368 38 1 0 523 560 408620617 408620580 1.460000e-06 65.8
8 TraesCS1B01G227300 chr1D 92.243 1792 70 22 1 1780 302348129 302349863 0.000000e+00 2475.0
9 TraesCS1B01G227300 chr1D 92.616 1246 63 14 4472 5690 302351335 302352578 0.000000e+00 1764.0
10 TraesCS1B01G227300 chr1D 93.844 601 17 6 3838 4430 302350744 302351332 0.000000e+00 887.0
11 TraesCS1B01G227300 chr1D 87.129 606 60 9 5693 6281 302352625 302353229 0.000000e+00 671.0
12 TraesCS1B01G227300 chr1D 89.541 545 31 10 1851 2378 302349973 302350508 0.000000e+00 667.0
13 TraesCS1B01G227300 chr1D 88.263 213 10 7 2487 2685 302350492 302350703 2.260000e-59 241.0
14 TraesCS1B01G227300 chr1D 100.000 35 0 0 1807 1841 2591930 2591896 1.460000e-06 65.8
15 TraesCS1B01G227300 chr1A 93.554 1629 74 18 3838 5442 377004421 377006042 0.000000e+00 2398.0
16 TraesCS1B01G227300 chr1A 90.730 1780 82 27 1 1773 377001855 377003558 0.000000e+00 2296.0
17 TraesCS1B01G227300 chr1A 88.139 548 40 8 1851 2381 377003677 377004216 4.130000e-176 628.0
18 TraesCS1B01G227300 chr1A 89.604 202 7 6 2487 2674 377004196 377004397 1.750000e-60 244.0
19 TraesCS1B01G227300 chr1A 95.000 40 2 0 1807 1846 548375571 548375532 5.260000e-06 63.9
20 TraesCS1B01G227300 chr4B 97.385 1109 29 0 2716 3824 660663996 660662888 0.000000e+00 1888.0
21 TraesCS1B01G227300 chr4B 95.173 1098 49 2 2716 3810 74674445 74673349 0.000000e+00 1731.0
22 TraesCS1B01G227300 chr4B 91.473 129 10 1 2366 2493 467273912 467273784 6.470000e-40 176.0
23 TraesCS1B01G227300 chr3B 95.886 1118 43 3 2709 3824 23785490 23784374 0.000000e+00 1807.0
24 TraesCS1B01G227300 chr3B 83.041 171 26 2 5866 6033 23401168 23401338 1.090000e-32 152.0
25 TraesCS1B01G227300 chr6B 95.860 1087 45 0 2716 3802 547004831 547005917 0.000000e+00 1759.0
26 TraesCS1B01G227300 chr6B 91.344 1109 92 3 2716 3824 437481274 437482378 0.000000e+00 1513.0
27 TraesCS1B01G227300 chr6B 92.857 56 4 0 6051 6106 56818888 56818833 1.450000e-11 82.4
28 TraesCS1B01G227300 chr5B 93.716 1114 63 6 2716 3824 33951967 33950856 0.000000e+00 1663.0
29 TraesCS1B01G227300 chr4A 94.970 1014 50 1 2716 3729 659019279 659018267 0.000000e+00 1589.0
30 TraesCS1B01G227300 chr4A 76.471 425 64 14 5719 6110 160247708 160247287 1.380000e-46 198.0
31 TraesCS1B01G227300 chr4A 91.406 128 10 1 2367 2493 4530097 4530224 2.330000e-39 174.0
32 TraesCS1B01G227300 chr4A 97.297 37 1 0 1804 1840 476991195 476991231 5.260000e-06 63.9
33 TraesCS1B01G227300 chr7B 89.225 1123 114 6 2704 3824 690596103 690597220 0.000000e+00 1397.0
34 TraesCS1B01G227300 chr6D 74.831 592 98 30 5514 6061 136125922 136126506 2.950000e-53 220.0
35 TraesCS1B01G227300 chr7A 93.846 130 6 2 2367 2495 115241319 115241447 1.790000e-45 195.0
36 TraesCS1B01G227300 chr7A 81.720 93 17 0 5823 5915 4533895 4533803 1.880000e-10 78.7
37 TraesCS1B01G227300 chr5D 78.767 292 44 8 5830 6105 338659435 338659724 5.000000e-41 180.0
38 TraesCS1B01G227300 chr5D 91.406 128 10 1 2366 2492 455607928 455608055 2.330000e-39 174.0
39 TraesCS1B01G227300 chr5D 86.755 151 13 7 2350 2497 403907845 403907991 1.810000e-35 161.0
40 TraesCS1B01G227300 chr5D 97.436 39 1 0 1807 1845 297986348 297986310 4.060000e-07 67.6
41 TraesCS1B01G227300 chr5D 97.436 39 0 1 1802 1839 438623532 438623494 1.460000e-06 65.8
42 TraesCS1B01G227300 chr7D 79.094 287 39 12 5851 6121 450271716 450271435 1.800000e-40 178.0
43 TraesCS1B01G227300 chr7D 73.892 406 61 22 5741 6107 549136641 549137040 3.080000e-23 121.0
44 TraesCS1B01G227300 chr7D 93.478 46 1 1 1796 1839 631856865 631856910 4.060000e-07 67.6
45 TraesCS1B01G227300 chr2B 91.473 129 10 1 2366 2493 25948793 25948921 6.470000e-40 176.0
46 TraesCS1B01G227300 chr2B 89.552 134 12 2 2361 2493 378986029 378986161 1.080000e-37 169.0
47 TraesCS1B01G227300 chr2B 79.752 242 41 4 5817 6056 596372887 596372652 1.080000e-37 169.0
48 TraesCS1B01G227300 chr2B 88.406 138 15 1 2356 2492 665184575 665184438 1.400000e-36 165.0
49 TraesCS1B01G227300 chr2B 79.828 233 36 8 5784 6007 742895651 742895421 6.520000e-35 159.0
50 TraesCS1B01G227300 chr2B 78.049 246 44 5 5852 6094 569975006 569974768 5.070000e-31 147.0
51 TraesCS1B01G227300 chr2A 90.769 130 11 1 2364 2492 754186070 754185941 8.370000e-39 172.0
52 TraesCS1B01G227300 chr3D 79.310 232 42 4 5817 6044 592008952 592009181 2.340000e-34 158.0
53 TraesCS1B01G227300 chr3D 75.084 297 47 18 5830 6107 604631352 604631640 5.150000e-21 113.0
54 TraesCS1B01G227300 chr2D 78.058 278 40 15 5748 6007 608982559 608982285 8.430000e-34 156.0
55 TraesCS1B01G227300 chr2D 89.062 64 5 1 6051 6114 7230447 7230386 1.880000e-10 78.7
56 TraesCS1B01G227300 chr2D 93.182 44 1 2 1807 1849 619479404 619479362 5.260000e-06 63.9
57 TraesCS1B01G227300 chr4D 81.522 184 31 2 5817 5998 40584531 40584349 1.410000e-31 148.0
58 TraesCS1B01G227300 chr3A 92.000 75 6 0 6207 6281 581620487 581620413 8.610000e-19 106.0
59 TraesCS1B01G227300 chr5A 100.000 33 0 0 1807 1839 375289748 375289780 1.890000e-05 62.1
60 TraesCS1B01G227300 chr5A 93.023 43 2 1 1807 1849 476958926 476958885 1.890000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G227300 chr1B 408614770 408621050 6280 True 3910.2 11599 98.245333 1 6281 3 chr1B.!!$R5 6280
1 TraesCS1B01G227300 chr1B 146770843 146771929 1086 True 1400.0 1400 89.899000 2722 3810 1 chr1B.!!$R1 1088
2 TraesCS1B01G227300 chr1D 302348129 302353229 5100 False 1117.5 2475 90.606000 1 6281 6 chr1D.!!$F1 6280
3 TraesCS1B01G227300 chr1A 377001855 377006042 4187 False 1391.5 2398 90.506750 1 5442 4 chr1A.!!$F1 5441
4 TraesCS1B01G227300 chr4B 660662888 660663996 1108 True 1888.0 1888 97.385000 2716 3824 1 chr4B.!!$R3 1108
5 TraesCS1B01G227300 chr4B 74673349 74674445 1096 True 1731.0 1731 95.173000 2716 3810 1 chr4B.!!$R1 1094
6 TraesCS1B01G227300 chr3B 23784374 23785490 1116 True 1807.0 1807 95.886000 2709 3824 1 chr3B.!!$R1 1115
7 TraesCS1B01G227300 chr6B 547004831 547005917 1086 False 1759.0 1759 95.860000 2716 3802 1 chr6B.!!$F2 1086
8 TraesCS1B01G227300 chr6B 437481274 437482378 1104 False 1513.0 1513 91.344000 2716 3824 1 chr6B.!!$F1 1108
9 TraesCS1B01G227300 chr5B 33950856 33951967 1111 True 1663.0 1663 93.716000 2716 3824 1 chr5B.!!$R1 1108
10 TraesCS1B01G227300 chr4A 659018267 659019279 1012 True 1589.0 1589 94.970000 2716 3729 1 chr4A.!!$R2 1013
11 TraesCS1B01G227300 chr7B 690596103 690597220 1117 False 1397.0 1397 89.225000 2704 3824 1 chr7B.!!$F1 1120
12 TraesCS1B01G227300 chr6D 136125922 136126506 584 False 220.0 220 74.831000 5514 6061 1 chr6D.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 307 1.267806 GAACCAATGCAGGTGTCACAG 59.732 52.381 5.12 0.00 42.25 3.66 F
1617 1634 1.563879 CATGGACCACACCTCCCATTA 59.436 52.381 0.00 0.00 37.30 1.90 F
1945 2029 0.176680 AACAGTGCCTAGGAGCATCG 59.823 55.000 14.75 2.24 46.24 3.84 F
3617 3763 0.245266 TTTCGTCAGCGCCACATAGA 59.755 50.000 2.29 0.00 38.14 1.98 F
3925 4072 0.320374 TGGACAACGTCTCCATCACC 59.680 55.000 10.23 0.00 32.52 4.02 F
5112 5294 0.182061 AGCTACTCGGGGTATCGACA 59.818 55.000 0.00 0.00 35.18 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1715 0.394938 ACGTATGCACTGTGTCCCAA 59.605 50.0 9.86 0.0 0.00 4.12 R
3600 3746 0.179137 CTTCTATGTGGCGCTGACGA 60.179 55.0 7.64 0.0 43.93 4.20 R
3774 3921 1.452145 AACCACAACTTCGCGGCAAT 61.452 50.0 6.13 0.0 0.00 3.56 R
5040 5220 0.036765 AAATCGCGTCAGTAGGGCAA 60.037 50.0 5.77 0.0 0.00 4.52 R
5238 5420 0.745486 CATCGGACAGCATGCCTTCA 60.745 55.0 15.66 0.0 42.53 3.02 R
6208 6472 0.318120 GGCCTCTGCTAGAGATGCTC 59.682 60.0 12.91 0.0 45.07 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 5.465724 CCTTTTTCGCAGTTTACTACTCTGT 59.534 40.000 0.00 0.00 33.85 3.41
87 89 4.170292 TCGCAGTTTACTACTCTGTTCC 57.830 45.455 0.00 0.00 33.85 3.62
92 94 5.482908 CAGTTTACTACTCTGTTCCAGCAT 58.517 41.667 0.00 0.00 33.85 3.79
305 307 1.267806 GAACCAATGCAGGTGTCACAG 59.732 52.381 5.12 0.00 42.25 3.66
404 406 5.869344 TGTTCATTGCTTACTGCTACTACTG 59.131 40.000 0.00 0.00 43.37 2.74
437 439 8.214721 TCTTCCTGACCTTATTTTCCTTCTTA 57.785 34.615 0.00 0.00 0.00 2.10
439 441 8.807948 TTCCTGACCTTATTTTCCTTCTTATG 57.192 34.615 0.00 0.00 0.00 1.90
440 442 7.928873 TCCTGACCTTATTTTCCTTCTTATGT 58.071 34.615 0.00 0.00 0.00 2.29
441 443 8.390921 TCCTGACCTTATTTTCCTTCTTATGTT 58.609 33.333 0.00 0.00 0.00 2.71
442 444 8.462016 CCTGACCTTATTTTCCTTCTTATGTTG 58.538 37.037 0.00 0.00 0.00 3.33
443 445 8.934023 TGACCTTATTTTCCTTCTTATGTTGT 57.066 30.769 0.00 0.00 0.00 3.32
444 446 9.362151 TGACCTTATTTTCCTTCTTATGTTGTT 57.638 29.630 0.00 0.00 0.00 2.83
445 447 9.626045 GACCTTATTTTCCTTCTTATGTTGTTG 57.374 33.333 0.00 0.00 0.00 3.33
446 448 9.143155 ACCTTATTTTCCTTCTTATGTTGTTGT 57.857 29.630 0.00 0.00 0.00 3.32
447 449 9.981114 CCTTATTTTCCTTCTTATGTTGTTGTT 57.019 29.630 0.00 0.00 0.00 2.83
451 453 9.758651 ATTTTCCTTCTTATGTTGTTGTTTACC 57.241 29.630 0.00 0.00 0.00 2.85
452 454 6.548441 TCCTTCTTATGTTGTTGTTTACCG 57.452 37.500 0.00 0.00 0.00 4.02
453 455 6.056884 TCCTTCTTATGTTGTTGTTTACCGT 58.943 36.000 0.00 0.00 0.00 4.83
454 456 7.215789 TCCTTCTTATGTTGTTGTTTACCGTA 58.784 34.615 0.00 0.00 0.00 4.02
455 457 7.171337 TCCTTCTTATGTTGTTGTTTACCGTAC 59.829 37.037 0.00 0.00 0.00 3.67
456 458 7.041916 CCTTCTTATGTTGTTGTTTACCGTACA 60.042 37.037 0.00 0.00 0.00 2.90
457 459 7.966246 TCTTATGTTGTTGTTTACCGTACAT 57.034 32.000 0.00 0.00 0.00 2.29
458 460 9.486497 TTCTTATGTTGTTGTTTACCGTACATA 57.514 29.630 0.00 0.00 0.00 2.29
459 461 9.656040 TCTTATGTTGTTGTTTACCGTACATAT 57.344 29.630 0.00 0.00 30.96 1.78
460 462 9.697250 CTTATGTTGTTGTTTACCGTACATATG 57.303 33.333 0.00 0.00 30.96 1.78
461 463 7.908827 ATGTTGTTGTTTACCGTACATATGA 57.091 32.000 10.38 0.00 0.00 2.15
462 464 7.908827 TGTTGTTGTTTACCGTACATATGAT 57.091 32.000 10.38 0.00 0.00 2.45
463 465 7.744059 TGTTGTTGTTTACCGTACATATGATG 58.256 34.615 10.38 0.00 0.00 3.07
464 466 7.388224 TGTTGTTGTTTACCGTACATATGATGT 59.612 33.333 10.38 3.36 46.92 3.06
471 473 8.806634 GTTTACCGTACATATGATGTTTCGTAA 58.193 33.333 10.38 4.04 41.63 3.18
541 543 8.958175 TGCTAATCTTATTTTGTTGTTTACCG 57.042 30.769 0.00 0.00 0.00 4.02
708 710 3.644966 TTGTCTCACCTGAAACTTGGT 57.355 42.857 0.00 0.00 36.96 3.67
782 787 7.697691 TCTAATAATTGCAGCTGTTCTTTAGC 58.302 34.615 16.64 0.00 41.43 3.09
806 811 4.326826 CCTGTTCTCTAGCAAATTGTCCA 58.673 43.478 0.00 0.00 0.00 4.02
825 830 2.540973 CCATAGCGAGAACGACGAATCA 60.541 50.000 0.00 0.00 42.66 2.57
839 844 4.085363 CGACGAATCATGATACTGTGAAGC 60.085 45.833 9.04 0.00 0.00 3.86
913 921 4.263506 GGCCCTGACTATAAATAGGCATGT 60.264 45.833 6.00 0.00 46.65 3.21
1115 1130 5.751028 GCTTGCTTCGTACTCTTCTCATAAT 59.249 40.000 0.00 0.00 0.00 1.28
1118 1133 9.469807 CTTGCTTCGTACTCTTCTCATAATATT 57.530 33.333 0.00 0.00 0.00 1.28
1252 1268 4.630111 CATCTTAGGACAGGATTCAGAGC 58.370 47.826 0.00 0.00 0.00 4.09
1266 1283 5.239087 GGATTCAGAGCAAGGATCATCTTTC 59.761 44.000 0.00 0.00 0.00 2.62
1267 1284 4.831674 TCAGAGCAAGGATCATCTTTCA 57.168 40.909 0.00 0.00 0.00 2.69
1268 1285 5.169992 TCAGAGCAAGGATCATCTTTCAA 57.830 39.130 0.00 0.00 0.00 2.69
1271 1288 7.341030 TCAGAGCAAGGATCATCTTTCAATTA 58.659 34.615 0.00 0.00 0.00 1.40
1272 1289 7.281774 TCAGAGCAAGGATCATCTTTCAATTAC 59.718 37.037 0.00 0.00 0.00 1.89
1273 1290 7.282675 CAGAGCAAGGATCATCTTTCAATTACT 59.717 37.037 0.00 0.00 0.00 2.24
1274 1291 7.833183 AGAGCAAGGATCATCTTTCAATTACTT 59.167 33.333 0.00 0.00 0.00 2.24
1275 1292 7.994194 AGCAAGGATCATCTTTCAATTACTTC 58.006 34.615 0.00 0.00 0.00 3.01
1276 1293 7.833183 AGCAAGGATCATCTTTCAATTACTTCT 59.167 33.333 0.00 0.00 0.00 2.85
1277 1294 8.465201 GCAAGGATCATCTTTCAATTACTTCTT 58.535 33.333 0.00 0.00 0.00 2.52
1338 1355 2.768698 AGTGCATCTCTATCAGCATGC 58.231 47.619 10.51 10.51 41.75 4.06
1361 1378 6.071108 TGCTCTGATTTCTTAGCTAGTGACTT 60.071 38.462 0.00 0.00 35.95 3.01
1582 1599 3.426787 CACCCCCAGTGTATGTTTACA 57.573 47.619 0.00 0.00 41.93 2.41
1583 1600 3.963129 CACCCCCAGTGTATGTTTACAT 58.037 45.455 0.53 0.53 40.35 2.29
1584 1601 3.694072 CACCCCCAGTGTATGTTTACATG 59.306 47.826 5.64 0.00 40.35 3.21
1585 1602 2.687935 CCCCCAGTGTATGTTTACATGC 59.312 50.000 5.64 4.93 40.35 4.06
1586 1603 3.351740 CCCCAGTGTATGTTTACATGCA 58.648 45.455 9.18 9.18 44.61 3.96
1593 1610 5.295431 TGTATGTTTACATGCAACTCTGC 57.705 39.130 10.58 0.00 44.03 4.26
1617 1634 1.563879 CATGGACCACACCTCCCATTA 59.436 52.381 0.00 0.00 37.30 1.90
1618 1635 1.979809 TGGACCACACCTCCCATTAT 58.020 50.000 0.00 0.00 0.00 1.28
1619 1636 3.138123 TGGACCACACCTCCCATTATA 57.862 47.619 0.00 0.00 0.00 0.98
1620 1637 2.775384 TGGACCACACCTCCCATTATAC 59.225 50.000 0.00 0.00 0.00 1.47
1621 1638 3.046374 GGACCACACCTCCCATTATACT 58.954 50.000 0.00 0.00 0.00 2.12
1622 1639 3.181454 GGACCACACCTCCCATTATACTG 60.181 52.174 0.00 0.00 0.00 2.74
1623 1640 3.454812 GACCACACCTCCCATTATACTGT 59.545 47.826 0.00 0.00 0.00 3.55
1660 1677 4.296690 GCGGCTAACGTTGATAATCTAGT 58.703 43.478 11.99 0.00 46.52 2.57
1687 1704 8.523915 TGAGGTCATTTCATTATACTTTGCAT 57.476 30.769 0.00 0.00 0.00 3.96
1688 1705 8.970020 TGAGGTCATTTCATTATACTTTGCATT 58.030 29.630 0.00 0.00 0.00 3.56
1689 1706 9.807649 GAGGTCATTTCATTATACTTTGCATTT 57.192 29.630 0.00 0.00 0.00 2.32
1690 1707 9.590451 AGGTCATTTCATTATACTTTGCATTTG 57.410 29.630 0.00 0.00 0.00 2.32
1691 1708 8.330302 GGTCATTTCATTATACTTTGCATTTGC 58.670 33.333 0.00 0.00 42.50 3.68
1714 1731 2.305635 ACTCATTGGGACACAGTGCATA 59.694 45.455 0.00 0.00 39.29 3.14
1729 1746 2.096496 GTGCATACGTACTACTCGGTGT 59.904 50.000 0.00 0.00 0.00 4.16
1744 1761 0.320421 GGTGTGCGTGCTCTCCTTTA 60.320 55.000 7.54 0.00 0.00 1.85
1755 1772 5.463724 CGTGCTCTCCTTTAATAAGATCCAC 59.536 44.000 0.00 0.00 32.92 4.02
1780 1797 9.280174 ACAAAATTTCTAAAAGATGAGTACCGA 57.720 29.630 0.00 0.00 0.00 4.69
1783 1800 6.939551 TTTCTAAAAGATGAGTACCGAACG 57.060 37.500 0.00 0.00 0.00 3.95
1798 1828 3.572584 CCGAACGGTAGTAATATGCTCC 58.427 50.000 4.99 0.00 0.00 4.70
1800 1830 3.255149 CGAACGGTAGTAATATGCTCCCT 59.745 47.826 0.00 0.00 0.00 4.20
1801 1831 4.615452 CGAACGGTAGTAATATGCTCCCTC 60.615 50.000 0.00 0.00 0.00 4.30
1802 1832 3.163467 ACGGTAGTAATATGCTCCCTCC 58.837 50.000 0.00 0.00 0.00 4.30
1803 1833 2.163815 CGGTAGTAATATGCTCCCTCCG 59.836 54.545 0.00 0.00 0.00 4.63
1804 1834 3.163467 GGTAGTAATATGCTCCCTCCGT 58.837 50.000 0.00 0.00 0.00 4.69
1805 1835 3.577415 GGTAGTAATATGCTCCCTCCGTT 59.423 47.826 0.00 0.00 0.00 4.44
1808 1838 5.881923 AGTAATATGCTCCCTCCGTTAAA 57.118 39.130 0.00 0.00 0.00 1.52
1809 1839 6.243216 AGTAATATGCTCCCTCCGTTAAAA 57.757 37.500 0.00 0.00 0.00 1.52
1810 1840 6.053650 AGTAATATGCTCCCTCCGTTAAAAC 58.946 40.000 0.00 0.00 0.00 2.43
1839 1911 9.011860 TCTTATATTATAGGACGGAGGGAGTAT 57.988 37.037 0.00 0.00 0.00 2.12
1843 1915 6.460103 TTATAGGACGGAGGGAGTATTACT 57.540 41.667 0.00 0.00 0.00 2.24
1844 1916 3.226682 AGGACGGAGGGAGTATTACTC 57.773 52.381 14.34 14.34 44.32 2.59
1845 1917 2.512896 AGGACGGAGGGAGTATTACTCA 59.487 50.000 22.10 0.00 46.79 3.41
1846 1918 3.140519 AGGACGGAGGGAGTATTACTCAT 59.859 47.826 22.10 12.03 46.79 2.90
1847 1919 3.506844 GGACGGAGGGAGTATTACTCATC 59.493 52.174 22.10 18.24 46.79 2.92
1848 1920 4.142790 GACGGAGGGAGTATTACTCATCA 58.857 47.826 22.10 0.00 46.79 3.07
1849 1921 4.742012 ACGGAGGGAGTATTACTCATCAT 58.258 43.478 22.10 6.57 46.79 2.45
1850 1922 4.524714 ACGGAGGGAGTATTACTCATCATG 59.475 45.833 22.10 16.59 46.79 3.07
1851 1923 4.524714 CGGAGGGAGTATTACTCATCATGT 59.475 45.833 22.10 3.23 46.79 3.21
1852 1924 5.710567 CGGAGGGAGTATTACTCATCATGTA 59.289 44.000 22.10 0.00 46.79 2.29
1853 1925 6.349445 CGGAGGGAGTATTACTCATCATGTAC 60.349 46.154 22.10 5.35 46.79 2.90
1854 1926 6.722129 GGAGGGAGTATTACTCATCATGTACT 59.278 42.308 22.10 8.82 46.79 2.73
1855 1927 7.889073 GGAGGGAGTATTACTCATCATGTACTA 59.111 40.741 22.10 0.00 46.79 1.82
1856 1928 8.871629 AGGGAGTATTACTCATCATGTACTAG 57.128 38.462 22.10 0.00 46.79 2.57
1869 1941 9.481340 TCATCATGTACTAGTTTCTATTGCATC 57.519 33.333 0.00 0.00 0.00 3.91
1875 1947 8.749354 TGTACTAGTTTCTATTGCATCTCTCAA 58.251 33.333 0.00 0.00 0.00 3.02
1886 1958 9.755804 CTATTGCATCTCTCAAGTGTAGATTAA 57.244 33.333 0.00 0.00 0.00 1.40
1920 2004 2.033801 CACCTTCTGACTGCTGGTTTTG 59.966 50.000 0.00 0.00 0.00 2.44
1923 2007 3.882888 CCTTCTGACTGCTGGTTTTGTAA 59.117 43.478 0.00 0.00 0.00 2.41
1945 2029 0.176680 AACAGTGCCTAGGAGCATCG 59.823 55.000 14.75 2.24 46.24 3.84
1947 2031 2.136878 AGTGCCTAGGAGCATCGGG 61.137 63.158 14.75 0.00 46.24 5.14
1986 2070 1.514443 GCGAGACGAAGGAAGACGG 60.514 63.158 0.00 0.00 0.00 4.79
2005 2089 2.678324 GGAGACGGAGACAAAGAAGTG 58.322 52.381 0.00 0.00 0.00 3.16
2010 2094 2.632996 ACGGAGACAAAGAAGTGGATGA 59.367 45.455 0.00 0.00 0.00 2.92
2017 2101 2.744202 CAAAGAAGTGGATGAGGTTCGG 59.256 50.000 0.00 0.00 0.00 4.30
2046 2130 2.986479 GCGGTAAAAGCCAATTGTTCAG 59.014 45.455 4.43 0.00 0.00 3.02
2069 2153 1.273606 AGATTCAGACGTGGGTGAGTG 59.726 52.381 0.00 0.00 0.00 3.51
2071 2155 0.387929 TTCAGACGTGGGTGAGTGAC 59.612 55.000 0.00 0.00 0.00 3.67
2097 2181 6.693545 TGAGTTGTTGTTAAACTTTTATGGCG 59.306 34.615 0.00 0.00 37.98 5.69
2098 2182 6.797454 AGTTGTTGTTAAACTTTTATGGCGA 58.203 32.000 0.00 0.00 34.16 5.54
2102 2186 6.144724 TGTTGTTAAACTTTTATGGCGATTGC 59.855 34.615 0.00 0.00 37.19 3.56
2284 2383 4.699735 CACAAGGACAATACTAACATGGCA 59.300 41.667 0.00 0.00 0.00 4.92
2365 2464 6.812160 GCCAAACAGTATAGGATATTAGGACG 59.188 42.308 0.00 0.00 0.00 4.79
2366 2465 7.525029 GCCAAACAGTATAGGATATTAGGACGT 60.525 40.741 0.00 0.00 0.00 4.34
2367 2466 9.017509 CCAAACAGTATAGGATATTAGGACGTA 57.982 37.037 0.00 0.00 0.00 3.57
2368 2467 9.837525 CAAACAGTATAGGATATTAGGACGTAC 57.162 37.037 0.00 0.00 0.00 3.67
2369 2468 9.804977 AAACAGTATAGGATATTAGGACGTACT 57.195 33.333 5.18 5.18 0.00 2.73
2370 2469 9.447157 AACAGTATAGGATATTAGGACGTACTC 57.553 37.037 1.79 0.00 0.00 2.59
2371 2470 8.600668 ACAGTATAGGATATTAGGACGTACTCA 58.399 37.037 1.79 0.00 0.00 3.41
2372 2471 8.881743 CAGTATAGGATATTAGGACGTACTCAC 58.118 40.741 1.79 0.00 0.00 3.51
2373 2472 8.824783 AGTATAGGATATTAGGACGTACTCACT 58.175 37.037 1.79 0.00 0.00 3.41
2374 2473 9.097257 GTATAGGATATTAGGACGTACTCACTC 57.903 40.741 1.79 0.00 0.00 3.51
2375 2474 5.315348 AGGATATTAGGACGTACTCACTCC 58.685 45.833 1.79 7.04 0.00 3.85
2376 2475 4.153835 GGATATTAGGACGTACTCACTCCG 59.846 50.000 1.79 0.00 31.19 4.63
2377 2476 2.479566 TTAGGACGTACTCACTCCGT 57.520 50.000 1.79 0.00 37.56 4.69
2380 2479 1.423056 GACGTACTCACTCCGTCCG 59.577 63.158 0.00 0.00 43.77 4.79
2381 2480 1.975363 GACGTACTCACTCCGTCCGG 61.975 65.000 0.00 0.00 43.77 5.14
2382 2481 1.742880 CGTACTCACTCCGTCCGGA 60.743 63.158 0.00 0.00 42.90 5.14
2383 2482 1.300971 CGTACTCACTCCGTCCGGAA 61.301 60.000 5.23 0.00 44.66 4.30
2384 2483 0.883833 GTACTCACTCCGTCCGGAAA 59.116 55.000 5.23 0.00 44.66 3.13
2385 2484 1.475682 GTACTCACTCCGTCCGGAAAT 59.524 52.381 5.23 0.00 44.66 2.17
2386 2485 1.843368 ACTCACTCCGTCCGGAAATA 58.157 50.000 5.23 0.00 44.66 1.40
2387 2486 1.475682 ACTCACTCCGTCCGGAAATAC 59.524 52.381 5.23 0.00 44.66 1.89
2388 2487 1.749634 CTCACTCCGTCCGGAAATACT 59.250 52.381 5.23 0.00 44.66 2.12
2389 2488 2.165845 CTCACTCCGTCCGGAAATACTT 59.834 50.000 5.23 0.00 44.66 2.24
2390 2489 2.094390 TCACTCCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 44.66 3.16
2391 2490 1.897802 ACTCCGTCCGGAAATACTTGT 59.102 47.619 5.23 0.00 44.66 3.16
2392 2491 3.091545 ACTCCGTCCGGAAATACTTGTA 58.908 45.455 5.23 0.00 44.66 2.41
2393 2492 3.703052 ACTCCGTCCGGAAATACTTGTAT 59.297 43.478 5.23 0.00 44.66 2.29
2394 2493 4.202090 ACTCCGTCCGGAAATACTTGTATC 60.202 45.833 5.23 0.00 44.66 2.24
2395 2494 3.700539 TCCGTCCGGAAATACTTGTATCA 59.299 43.478 5.23 0.00 42.05 2.15
2396 2495 4.160065 TCCGTCCGGAAATACTTGTATCAA 59.840 41.667 5.23 0.00 42.05 2.57
2397 2496 4.871557 CCGTCCGGAAATACTTGTATCAAA 59.128 41.667 5.23 0.00 37.50 2.69
2398 2497 5.352016 CCGTCCGGAAATACTTGTATCAAAA 59.648 40.000 5.23 0.00 37.50 2.44
2399 2498 6.037830 CCGTCCGGAAATACTTGTATCAAAAT 59.962 38.462 5.23 0.00 37.50 1.82
2400 2499 6.905076 CGTCCGGAAATACTTGTATCAAAATG 59.095 38.462 5.23 0.00 0.00 2.32
2401 2500 7.201574 CGTCCGGAAATACTTGTATCAAAATGA 60.202 37.037 5.23 0.00 0.00 2.57
2402 2501 8.455682 GTCCGGAAATACTTGTATCAAAATGAA 58.544 33.333 5.23 0.00 0.00 2.57
2403 2502 9.184523 TCCGGAAATACTTGTATCAAAATGAAT 57.815 29.630 0.00 0.00 0.00 2.57
2404 2503 9.236691 CCGGAAATACTTGTATCAAAATGAATG 57.763 33.333 0.00 0.00 0.00 2.67
2482 2581 8.889849 ATTTGAATAACAAGTATTTTCGGACG 57.110 30.769 0.00 0.00 39.77 4.79
2483 2582 6.411630 TGAATAACAAGTATTTTCGGACGG 57.588 37.500 0.00 0.00 32.26 4.79
2484 2583 6.164876 TGAATAACAAGTATTTTCGGACGGA 58.835 36.000 0.00 0.00 32.26 4.69
2485 2584 6.311935 TGAATAACAAGTATTTTCGGACGGAG 59.688 38.462 0.00 0.00 32.26 4.63
2486 2585 2.968675 ACAAGTATTTTCGGACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
2487 2586 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2488 2587 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2494 2593 2.437359 CGGACGGAGGGAGTACGT 60.437 66.667 0.00 0.00 40.75 3.57
2498 2597 0.460284 GACGGAGGGAGTACGTACGA 60.460 60.000 24.41 2.43 43.80 3.43
2530 2629 5.802956 CCTCTGATCTTTCTTACTTGTCGTC 59.197 44.000 0.00 0.00 0.00 4.20
2637 2736 5.746284 AGCAGAAAAAGGAAGGGTATAGTC 58.254 41.667 0.00 0.00 0.00 2.59
2642 2754 6.500751 AGAAAAAGGAAGGGTATAGTCAGTGA 59.499 38.462 0.00 0.00 0.00 3.41
2674 2813 7.767659 AGTGAAGTGATACTGTGATAGTACGTA 59.232 37.037 0.00 0.00 44.30 3.57
2675 2814 8.557864 GTGAAGTGATACTGTGATAGTACGTAT 58.442 37.037 0.00 0.00 44.30 3.06
2676 2815 8.557029 TGAAGTGATACTGTGATAGTACGTATG 58.443 37.037 0.00 0.00 44.30 2.39
2677 2816 7.436430 AGTGATACTGTGATAGTACGTATGG 57.564 40.000 0.00 0.00 44.30 2.74
2678 2817 7.222161 AGTGATACTGTGATAGTACGTATGGA 58.778 38.462 0.00 0.00 44.30 3.41
2680 2819 8.347771 GTGATACTGTGATAGTACGTATGGAAA 58.652 37.037 0.00 0.00 44.30 3.13
2684 2823 8.461249 ACTGTGATAGTACGTATGGAAATACT 57.539 34.615 0.00 0.00 38.04 2.12
2685 2824 9.565090 ACTGTGATAGTACGTATGGAAATACTA 57.435 33.333 0.00 0.00 38.04 1.82
2686 2825 9.823098 CTGTGATAGTACGTATGGAAATACTAC 57.177 37.037 0.00 0.00 33.97 2.73
2687 2826 9.565090 TGTGATAGTACGTATGGAAATACTACT 57.435 33.333 0.00 0.00 33.97 2.57
2688 2827 9.823098 GTGATAGTACGTATGGAAATACTACTG 57.177 37.037 0.00 0.00 33.97 2.74
2689 2828 9.006839 TGATAGTACGTATGGAAATACTACTGG 57.993 37.037 0.00 0.00 33.97 4.00
2690 2829 6.081872 AGTACGTATGGAAATACTACTGGC 57.918 41.667 0.00 0.00 0.00 4.85
2691 2830 5.595542 AGTACGTATGGAAATACTACTGGCA 59.404 40.000 0.00 0.00 0.00 4.92
2692 2831 4.690122 ACGTATGGAAATACTACTGGCAC 58.310 43.478 0.00 0.00 0.00 5.01
2693 2832 4.160814 ACGTATGGAAATACTACTGGCACA 59.839 41.667 0.00 0.00 0.00 4.57
2818 2959 7.174946 CCACAACTTCAGGTCAACTTATAACAT 59.825 37.037 0.00 0.00 0.00 2.71
2945 3086 4.079500 TGATTGACTGGGCCCACATATTAA 60.080 41.667 24.45 10.24 0.00 1.40
2947 3088 2.849943 TGACTGGGCCCACATATTAAGT 59.150 45.455 24.45 15.42 0.00 2.24
3352 3495 1.341581 ACTAGACAGAGAGGTCCTGGC 60.342 57.143 0.00 0.00 39.93 4.85
3353 3496 0.704664 TAGACAGAGAGGTCCTGGCA 59.295 55.000 0.00 0.00 42.04 4.92
3600 3746 5.562696 GCACACTGCTATGTTACACACATTT 60.563 40.000 0.00 0.00 40.99 2.32
3617 3763 0.245266 TTTCGTCAGCGCCACATAGA 59.755 50.000 2.29 0.00 38.14 1.98
3850 3997 7.903995 ACATTTGAATTTTTGACAACAGTGT 57.096 28.000 0.00 0.00 42.10 3.55
3925 4072 0.320374 TGGACAACGTCTCCATCACC 59.680 55.000 10.23 0.00 32.52 4.02
4319 4466 3.591835 CCAACGCCAACGCCAACT 61.592 61.111 0.00 0.00 45.53 3.16
4393 4540 2.029307 GCCTACCCTGCGGTAAGAGG 62.029 65.000 0.00 0.00 44.26 3.69
4395 4542 1.033574 CTACCCTGCGGTAAGAGGAG 58.966 60.000 0.00 0.00 44.26 3.69
4396 4543 0.333993 TACCCTGCGGTAAGAGGAGT 59.666 55.000 0.00 0.00 41.91 3.85
4406 4561 4.337555 GCGGTAAGAGGAGTACTATTGACA 59.662 45.833 0.00 0.00 31.96 3.58
4409 4564 4.373348 AAGAGGAGTACTATTGACACGC 57.627 45.455 0.00 0.00 0.00 5.34
4452 4607 2.598439 GCAAATGTGATCGATCGACTGC 60.598 50.000 22.06 18.03 0.00 4.40
4453 4608 1.858091 AATGTGATCGATCGACTGCC 58.142 50.000 22.06 10.51 0.00 4.85
4458 4613 1.203928 GATCGATCGACTGCCAACTG 58.796 55.000 22.06 0.00 0.00 3.16
4460 4615 2.792290 CGATCGACTGCCAACTGCG 61.792 63.158 10.26 0.00 45.60 5.18
4468 4623 1.682849 TGCCAACTGCGGACCTAAT 59.317 52.632 0.00 0.00 45.60 1.73
4478 4633 6.290294 ACTGCGGACCTAATAAGTTAAGAA 57.710 37.500 0.00 0.00 0.00 2.52
4486 4641 6.053650 ACCTAATAAGTTAAGAACCGCCATC 58.946 40.000 0.00 0.00 0.00 3.51
4624 4782 7.496584 CGACGACCGTAAGATATTAATTTTCC 58.503 38.462 0.00 0.00 43.02 3.13
4625 4783 7.380602 CGACGACCGTAAGATATTAATTTTCCT 59.619 37.037 0.00 0.00 43.02 3.36
4626 4784 8.953368 ACGACCGTAAGATATTAATTTTCCTT 57.047 30.769 0.00 0.00 43.02 3.36
4627 4785 8.823818 ACGACCGTAAGATATTAATTTTCCTTG 58.176 33.333 0.00 0.00 43.02 3.61
4628 4786 8.280497 CGACCGTAAGATATTAATTTTCCTTGG 58.720 37.037 0.00 0.00 43.02 3.61
4630 4788 8.899771 ACCGTAAGATATTAATTTTCCTTGGTG 58.100 33.333 0.00 0.00 43.02 4.17
4631 4789 9.116067 CCGTAAGATATTAATTTTCCTTGGTGA 57.884 33.333 0.00 0.00 43.02 4.02
4650 4824 4.495019 GGTGATTAATTACGCACGCATCAA 60.495 41.667 4.46 0.00 32.24 2.57
4655 4829 0.787787 TTACGCACGCATCAACTGAC 59.212 50.000 0.00 0.00 0.00 3.51
4668 4842 3.857854 CTGACCATCAGCGCGCAC 61.858 66.667 35.10 14.66 37.72 5.34
4684 4858 1.503994 CACACGCACCACACAAACA 59.496 52.632 0.00 0.00 0.00 2.83
4785 4963 1.368641 GCATAAGTCATGACCGCACA 58.631 50.000 22.21 3.74 36.69 4.57
4923 5101 2.050714 TTGTCTCGTCGTCGCCAC 60.051 61.111 0.00 0.00 36.96 5.01
4985 5163 4.329545 GGACTCCGGCCACTTGCA 62.330 66.667 2.24 0.00 43.89 4.08
5040 5220 1.823797 GTCTCCTCTACGTGTCTGGT 58.176 55.000 0.00 0.00 0.00 4.00
5045 5225 0.389948 CTCTACGTGTCTGGTTGCCC 60.390 60.000 0.00 0.00 0.00 5.36
5091 5273 1.292061 CGTTTTGTCGTGGTCCAGAA 58.708 50.000 0.00 0.00 0.00 3.02
5106 5288 1.409802 CCAGAAGAGCTACTCGGGGTA 60.410 57.143 5.97 0.00 35.36 3.69
5112 5294 0.182061 AGCTACTCGGGGTATCGACA 59.818 55.000 0.00 0.00 35.18 4.35
5119 5301 3.845259 GGGTATCGACAGGCGGCA 61.845 66.667 13.08 0.00 41.33 5.69
5238 5420 2.044946 GTCTGGAAGGCCGCCATT 60.045 61.111 18.97 2.85 36.79 3.16
5271 5453 0.109597 CCGATGCAAACCTCAAGCAC 60.110 55.000 0.00 0.00 41.60 4.40
5443 5626 7.382218 GTGGATTTGTTTAGTTGAGATTTGTGG 59.618 37.037 0.00 0.00 0.00 4.17
5444 5627 7.286546 TGGATTTGTTTAGTTGAGATTTGTGGA 59.713 33.333 0.00 0.00 0.00 4.02
5504 5689 2.249844 ATTTCCATTAGCCGTACCCG 57.750 50.000 0.00 0.00 0.00 5.28
5551 5738 0.976073 CTAGGGTTTCTCGCCTCCCA 60.976 60.000 0.00 0.00 42.12 4.37
5576 5763 2.917227 TGCCGTCAGTCTGCCTCA 60.917 61.111 0.00 0.00 0.00 3.86
5621 5812 3.461773 CGCAGTGGATCCCGGACT 61.462 66.667 9.90 2.98 0.00 3.85
5626 5817 1.553248 CAGTGGATCCCGGACTTTGTA 59.447 52.381 9.90 0.00 0.00 2.41
5669 5861 5.666969 TTATGTCTCCGTGAGTTTTGTTG 57.333 39.130 1.60 0.00 0.00 3.33
5671 5863 2.285977 GTCTCCGTGAGTTTTGTTGGT 58.714 47.619 1.60 0.00 0.00 3.67
5678 5870 4.379603 CCGTGAGTTTTGTTGGTGTTTGTA 60.380 41.667 0.00 0.00 0.00 2.41
5710 5902 1.577736 AGCCTAGCTCATGTCCTGTT 58.422 50.000 0.00 0.00 30.62 3.16
5711 5903 2.752030 AGCCTAGCTCATGTCCTGTTA 58.248 47.619 0.00 0.00 30.62 2.41
5758 5994 1.880675 GATTCTAGCATCGTCGGAGGA 59.119 52.381 2.53 2.53 0.00 3.71
5760 5996 0.107361 TCTAGCATCGTCGGAGGACA 60.107 55.000 2.02 0.00 43.61 4.02
5791 6027 1.412710 TGTCTATGGCGGGATTCAGTC 59.587 52.381 0.00 0.00 0.00 3.51
5813 6059 1.076332 CGTTTTGTCTCCGGTGGATC 58.924 55.000 0.00 0.00 0.00 3.36
5818 6064 0.970937 TGTCTCCGGTGGATCCAGTC 60.971 60.000 16.81 9.86 35.57 3.51
5825 6071 1.270839 CGGTGGATCCAGTCTGTGTTT 60.271 52.381 16.81 0.00 35.57 2.83
5838 6094 4.058124 GTCTGTGTTTGCATGTCTACAGA 58.942 43.478 12.71 12.71 41.35 3.41
5867 6123 3.383185 CCCTCTGATCTACGCTTCTCTTT 59.617 47.826 0.00 0.00 0.00 2.52
5909 6165 1.838077 GGTGCACTAGTTCTATGGGGT 59.162 52.381 17.98 0.00 0.00 4.95
5921 6177 0.613572 TATGGGGTCTCAGCACGACA 60.614 55.000 0.00 0.00 33.11 4.35
5928 6184 1.040646 TCTCAGCACGACAACTTCCT 58.959 50.000 0.00 0.00 0.00 3.36
5933 6189 1.154197 GCACGACAACTTCCTAACCC 58.846 55.000 0.00 0.00 0.00 4.11
5962 6218 1.072505 GAAGGTTTGTCCGGCTCCA 59.927 57.895 0.00 0.00 41.99 3.86
5969 6225 2.680352 GTCCGGCTCCAGTGAGGA 60.680 66.667 0.00 0.00 46.75 3.71
5982 6238 1.612146 TGAGGAAGGGGCGATGACA 60.612 57.895 0.00 0.00 0.00 3.58
6009 6267 3.573772 TTCGGCTCGCTCCAGTGTG 62.574 63.158 0.00 0.00 0.00 3.82
6018 6276 1.738099 CTCCAGTGTGTGTAGCCGC 60.738 63.158 0.00 0.00 0.00 6.53
6155 6419 8.434589 AAAAATACAGGAAATCATGGGAAAGA 57.565 30.769 0.00 0.00 30.95 2.52
6159 6423 9.713684 AATACAGGAAATCATGGGAAAGAATAA 57.286 29.630 0.00 0.00 30.95 1.40
6161 6425 8.071177 ACAGGAAATCATGGGAAAGAATAAAG 57.929 34.615 0.00 0.00 30.95 1.85
6183 6447 6.144078 AGTTCTTCTTGGCGTACAATTTTT 57.856 33.333 0.00 0.00 38.65 1.94
6187 6451 3.376540 TCTTGGCGTACAATTTTTGCAC 58.623 40.909 0.00 0.00 38.65 4.57
6208 6472 2.156504 CGTGAGTGTTTGAAGCTGCTAG 59.843 50.000 0.90 0.00 0.00 3.42
6209 6473 3.393800 GTGAGTGTTTGAAGCTGCTAGA 58.606 45.455 0.90 0.00 0.00 2.43
6266 6531 6.848069 TCAAACCCTCTTCCTATCTCAAAAA 58.152 36.000 0.00 0.00 0.00 1.94
6267 6532 6.942576 TCAAACCCTCTTCCTATCTCAAAAAG 59.057 38.462 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.095332 TGGATCTCTGAAGACTGACCAG 58.905 50.000 0.00 0.00 33.32 4.00
16 17 4.356436 TGGAATGGATCTCTGAAGACTGA 58.644 43.478 0.00 0.00 33.32 3.41
87 89 2.289756 CCATCCAGGATCTCTGATGCTG 60.290 54.545 18.05 18.05 46.18 4.41
404 406 7.981102 AAATAAGGTCAGGAAGAACTGTAAC 57.019 36.000 0.00 0.00 45.79 2.50
437 439 7.908827 TCATATGTACGGTAAACAACAACAT 57.091 32.000 1.90 0.00 34.11 2.71
439 441 7.745015 ACATCATATGTACGGTAAACAACAAC 58.255 34.615 1.90 0.00 42.78 3.32
440 442 7.908827 ACATCATATGTACGGTAAACAACAA 57.091 32.000 1.90 0.00 42.78 2.83
441 443 7.908827 AACATCATATGTACGGTAAACAACA 57.091 32.000 1.90 0.00 44.07 3.33
442 444 7.633281 CGAAACATCATATGTACGGTAAACAAC 59.367 37.037 1.90 0.00 44.07 3.32
443 445 7.331440 ACGAAACATCATATGTACGGTAAACAA 59.669 33.333 17.22 0.00 44.07 2.83
444 446 6.812656 ACGAAACATCATATGTACGGTAAACA 59.187 34.615 17.22 0.00 44.07 2.83
445 447 7.225523 ACGAAACATCATATGTACGGTAAAC 57.774 36.000 17.22 0.00 44.07 2.01
446 448 8.806634 GTTACGAAACATCATATGTACGGTAAA 58.193 33.333 17.22 0.00 44.07 2.01
447 449 8.190122 AGTTACGAAACATCATATGTACGGTAA 58.810 33.333 17.22 11.69 44.07 2.85
448 450 7.706159 AGTTACGAAACATCATATGTACGGTA 58.294 34.615 17.22 7.94 44.07 4.02
449 451 6.567050 AGTTACGAAACATCATATGTACGGT 58.433 36.000 17.22 8.63 44.07 4.83
450 452 8.564648 TTAGTTACGAAACATCATATGTACGG 57.435 34.615 17.22 0.00 44.07 4.02
457 459 9.529325 CAGAGGATTTAGTTACGAAACATCATA 57.471 33.333 0.00 0.00 38.12 2.15
458 460 8.258007 TCAGAGGATTTAGTTACGAAACATCAT 58.742 33.333 0.00 0.00 38.12 2.45
459 461 7.608153 TCAGAGGATTTAGTTACGAAACATCA 58.392 34.615 0.00 0.00 38.12 3.07
460 462 8.475331 TTCAGAGGATTTAGTTACGAAACATC 57.525 34.615 0.00 0.00 38.12 3.06
461 463 8.095169 ACTTCAGAGGATTTAGTTACGAAACAT 58.905 33.333 0.00 0.00 38.12 2.71
462 464 7.439381 ACTTCAGAGGATTTAGTTACGAAACA 58.561 34.615 0.00 0.00 38.12 2.83
463 465 7.886405 ACTTCAGAGGATTTAGTTACGAAAC 57.114 36.000 0.00 0.00 35.72 2.78
464 466 9.798994 GATACTTCAGAGGATTTAGTTACGAAA 57.201 33.333 0.00 0.00 0.00 3.46
471 473 5.964477 TGGTGGATACTTCAGAGGATTTAGT 59.036 40.000 0.00 0.00 37.61 2.24
685 687 3.503748 CCAAGTTTCAGGTGAGACAATCC 59.496 47.826 3.72 0.00 32.20 3.01
708 710 5.023452 TGTAGGCAGAGAACTATTGGAGAA 58.977 41.667 0.00 0.00 0.00 2.87
718 720 3.386768 TTGACACTGTAGGCAGAGAAC 57.613 47.619 1.30 0.00 45.28 3.01
782 787 2.744202 ACAATTTGCTAGAGAACAGGCG 59.256 45.455 0.00 0.00 0.00 5.52
806 811 3.003378 TCATGATTCGTCGTTCTCGCTAT 59.997 43.478 0.00 0.00 36.96 2.97
825 830 7.147655 ACCAACAGTATAGCTTCACAGTATCAT 60.148 37.037 0.00 0.00 0.00 2.45
913 921 5.745312 TGGAGTAATGAGAGCTCAAAGAA 57.255 39.130 17.77 0.00 43.58 2.52
1141 1157 7.935755 AGGCCACACATCTATGCATATTATATC 59.064 37.037 6.92 0.00 0.00 1.63
1187 1203 7.370383 ACAAACAGTGCTTAAGATTTGTATGG 58.630 34.615 6.67 3.08 38.22 2.74
1266 1283 8.554528 CACCATGCTGACTATAAGAAGTAATTG 58.445 37.037 0.00 0.00 0.00 2.32
1267 1284 7.227512 GCACCATGCTGACTATAAGAAGTAATT 59.772 37.037 0.00 0.00 40.96 1.40
1268 1285 6.708054 GCACCATGCTGACTATAAGAAGTAAT 59.292 38.462 0.00 0.00 40.96 1.89
1271 1288 4.446371 GCACCATGCTGACTATAAGAAGT 58.554 43.478 0.00 0.00 40.96 3.01
1272 1289 3.812053 GGCACCATGCTGACTATAAGAAG 59.188 47.826 0.13 0.00 44.28 2.85
1273 1290 3.808728 GGCACCATGCTGACTATAAGAA 58.191 45.455 0.13 0.00 44.28 2.52
1274 1291 3.475566 GGCACCATGCTGACTATAAGA 57.524 47.619 0.13 0.00 44.28 2.10
1319 1336 2.737783 GAGCATGCTGATAGAGATGCAC 59.262 50.000 28.27 1.07 43.04 4.57
1338 1355 7.918562 GGTAAGTCACTAGCTAAGAAATCAGAG 59.081 40.741 0.00 0.00 0.00 3.35
1361 1378 3.708121 AGCACATGATCACTGAGATGGTA 59.292 43.478 0.00 0.00 37.00 3.25
1585 1602 2.679837 GTGGTCCATGTATGCAGAGTTG 59.320 50.000 0.00 0.00 0.00 3.16
1586 1603 2.305635 TGTGGTCCATGTATGCAGAGTT 59.694 45.455 0.00 0.00 0.00 3.01
1587 1604 1.908619 TGTGGTCCATGTATGCAGAGT 59.091 47.619 0.00 0.00 0.00 3.24
1588 1605 2.283298 GTGTGGTCCATGTATGCAGAG 58.717 52.381 0.00 0.00 0.00 3.35
1589 1606 1.065491 GGTGTGGTCCATGTATGCAGA 60.065 52.381 0.00 0.00 0.00 4.26
1590 1607 1.065199 AGGTGTGGTCCATGTATGCAG 60.065 52.381 0.00 0.00 0.00 4.41
1591 1608 0.991146 AGGTGTGGTCCATGTATGCA 59.009 50.000 0.00 0.00 0.00 3.96
1592 1609 1.668419 GAGGTGTGGTCCATGTATGC 58.332 55.000 0.00 0.00 0.00 3.14
1593 1610 1.134098 GGGAGGTGTGGTCCATGTATG 60.134 57.143 0.00 0.00 35.57 2.39
1594 1611 1.213296 GGGAGGTGTGGTCCATGTAT 58.787 55.000 0.00 0.00 35.57 2.29
1617 1634 5.815740 CCGCCTCTGTTGTTTAATACAGTAT 59.184 40.000 10.74 0.00 41.87 2.12
1618 1635 5.172934 CCGCCTCTGTTGTTTAATACAGTA 58.827 41.667 10.74 0.00 41.87 2.74
1619 1636 4.000988 CCGCCTCTGTTGTTTAATACAGT 58.999 43.478 10.74 0.00 41.87 3.55
1620 1637 3.181510 GCCGCCTCTGTTGTTTAATACAG 60.182 47.826 0.00 0.00 42.41 2.74
1621 1638 2.745281 GCCGCCTCTGTTGTTTAATACA 59.255 45.455 0.00 0.00 34.12 2.29
1622 1639 3.007635 AGCCGCCTCTGTTGTTTAATAC 58.992 45.455 0.00 0.00 0.00 1.89
1623 1640 3.343941 AGCCGCCTCTGTTGTTTAATA 57.656 42.857 0.00 0.00 0.00 0.98
1660 1677 9.625747 TGCAAAGTATAATGAAATGACCTCATA 57.374 29.630 0.00 0.00 35.10 2.15
1687 1704 2.361757 CTGTGTCCCAATGAGTTGCAAA 59.638 45.455 0.00 0.00 33.90 3.68
1688 1705 1.955778 CTGTGTCCCAATGAGTTGCAA 59.044 47.619 0.00 0.00 33.90 4.08
1689 1706 1.133823 ACTGTGTCCCAATGAGTTGCA 60.134 47.619 0.00 0.00 33.90 4.08
1690 1707 1.267806 CACTGTGTCCCAATGAGTTGC 59.732 52.381 0.00 0.00 33.90 4.17
1691 1708 1.267806 GCACTGTGTCCCAATGAGTTG 59.732 52.381 9.86 0.00 35.05 3.16
1692 1709 1.133823 TGCACTGTGTCCCAATGAGTT 60.134 47.619 9.86 0.00 0.00 3.01
1698 1715 0.394938 ACGTATGCACTGTGTCCCAA 59.605 50.000 9.86 0.00 0.00 4.12
1714 1731 1.230635 ACGCACACCGAGTAGTACGT 61.231 55.000 0.00 0.00 41.02 3.57
1729 1746 4.465632 TCTTATTAAAGGAGAGCACGCA 57.534 40.909 0.00 0.00 33.22 5.24
1773 1790 4.823989 AGCATATTACTACCGTTCGGTACT 59.176 41.667 18.34 12.76 39.52 2.73
1780 1797 3.577415 GGAGGGAGCATATTACTACCGTT 59.423 47.826 0.00 0.00 43.60 4.44
1781 1798 3.163467 GGAGGGAGCATATTACTACCGT 58.837 50.000 0.00 0.00 43.60 4.83
1782 1799 2.163815 CGGAGGGAGCATATTACTACCG 59.836 54.545 0.00 0.00 43.60 4.02
1783 1800 3.163467 ACGGAGGGAGCATATTACTACC 58.837 50.000 0.00 0.00 38.57 3.18
1804 1834 9.630098 CCGTCCTATAATATAAGAGCGTTTTAA 57.370 33.333 0.00 0.00 0.00 1.52
1805 1835 9.013229 TCCGTCCTATAATATAAGAGCGTTTTA 57.987 33.333 0.00 0.00 0.00 1.52
1808 1838 6.095160 CCTCCGTCCTATAATATAAGAGCGTT 59.905 42.308 0.00 0.00 0.00 4.84
1809 1839 5.589452 CCTCCGTCCTATAATATAAGAGCGT 59.411 44.000 0.00 0.00 0.00 5.07
1810 1840 5.008811 CCCTCCGTCCTATAATATAAGAGCG 59.991 48.000 0.00 0.00 0.00 5.03
1811 1841 6.127793 TCCCTCCGTCCTATAATATAAGAGC 58.872 44.000 0.00 0.00 0.00 4.09
1813 1843 7.281366 ACTCCCTCCGTCCTATAATATAAGA 57.719 40.000 0.00 0.00 0.00 2.10
1814 1844 9.643735 AATACTCCCTCCGTCCTATAATATAAG 57.356 37.037 0.00 0.00 0.00 1.73
1817 1847 8.789782 AGTAATACTCCCTCCGTCCTATAATAT 58.210 37.037 0.00 0.00 0.00 1.28
1818 1848 8.167691 AGTAATACTCCCTCCGTCCTATAATA 57.832 38.462 0.00 0.00 0.00 0.98
1820 1850 6.044754 TGAGTAATACTCCCTCCGTCCTATAA 59.955 42.308 16.89 0.00 44.44 0.98
1822 1852 4.353191 TGAGTAATACTCCCTCCGTCCTAT 59.647 45.833 16.89 0.00 44.44 2.57
1823 1853 3.718434 TGAGTAATACTCCCTCCGTCCTA 59.282 47.826 16.89 0.00 44.44 2.94
1829 1901 6.722129 AGTACATGATGAGTAATACTCCCTCC 59.278 42.308 16.89 5.09 44.44 4.30
1843 1915 9.481340 GATGCAATAGAAACTAGTACATGATGA 57.519 33.333 0.00 0.00 0.00 2.92
1844 1916 9.486497 AGATGCAATAGAAACTAGTACATGATG 57.514 33.333 0.00 0.00 0.00 3.07
1845 1917 9.703892 GAGATGCAATAGAAACTAGTACATGAT 57.296 33.333 0.00 0.00 0.00 2.45
1846 1918 8.918116 AGAGATGCAATAGAAACTAGTACATGA 58.082 33.333 0.00 0.00 0.00 3.07
1847 1919 9.190858 GAGAGATGCAATAGAAACTAGTACATG 57.809 37.037 0.00 0.00 0.00 3.21
1848 1920 8.918116 TGAGAGATGCAATAGAAACTAGTACAT 58.082 33.333 0.00 0.00 0.00 2.29
1849 1921 8.293699 TGAGAGATGCAATAGAAACTAGTACA 57.706 34.615 0.00 0.00 0.00 2.90
1850 1922 9.243637 CTTGAGAGATGCAATAGAAACTAGTAC 57.756 37.037 0.00 0.00 0.00 2.73
1851 1923 8.972127 ACTTGAGAGATGCAATAGAAACTAGTA 58.028 33.333 0.00 0.00 0.00 1.82
1852 1924 7.763528 CACTTGAGAGATGCAATAGAAACTAGT 59.236 37.037 0.00 0.00 0.00 2.57
1853 1925 7.763528 ACACTTGAGAGATGCAATAGAAACTAG 59.236 37.037 0.00 0.00 0.00 2.57
1854 1926 7.615403 ACACTTGAGAGATGCAATAGAAACTA 58.385 34.615 0.00 0.00 0.00 2.24
1855 1927 6.471146 ACACTTGAGAGATGCAATAGAAACT 58.529 36.000 0.00 0.00 0.00 2.66
1856 1928 6.734104 ACACTTGAGAGATGCAATAGAAAC 57.266 37.500 0.00 0.00 0.00 2.78
1869 1941 9.645059 TGAACATTCTTAATCTACACTTGAGAG 57.355 33.333 0.00 0.00 0.00 3.20
1875 1947 9.601217 GTGGTATGAACATTCTTAATCTACACT 57.399 33.333 0.00 0.00 0.00 3.55
1886 1958 5.249393 AGTCAGAAGGTGGTATGAACATTCT 59.751 40.000 0.00 0.00 46.42 2.40
1920 2004 2.742589 GCTCCTAGGCACTGTTTGTTAC 59.257 50.000 2.96 0.00 41.52 2.50
1923 2007 0.764890 TGCTCCTAGGCACTGTTTGT 59.235 50.000 2.96 0.00 41.52 2.83
1945 2029 1.839994 TCTCCATGATGGTCTTGTCCC 59.160 52.381 11.87 0.00 39.03 4.46
1947 2031 3.539604 CCTTCTCCATGATGGTCTTGTC 58.460 50.000 11.87 0.00 39.03 3.18
1986 2070 2.296471 TCCACTTCTTTGTCTCCGTCTC 59.704 50.000 0.00 0.00 0.00 3.36
2003 2087 0.744874 TCGATCCGAACCTCATCCAC 59.255 55.000 0.00 0.00 31.06 4.02
2005 2089 1.337260 CCATCGATCCGAACCTCATCC 60.337 57.143 0.00 0.00 39.99 3.51
2010 2094 2.417516 CGCCATCGATCCGAACCT 59.582 61.111 8.84 0.00 39.99 3.50
2017 2101 0.586802 GGCTTTTACCGCCATCGATC 59.413 55.000 0.00 0.00 46.77 3.69
2046 2130 1.272490 TCACCCACGTCTGAATCTGAC 59.728 52.381 9.81 9.81 0.00 3.51
2069 2153 9.233232 CCATAAAAGTTTAACAACAACTCAGTC 57.767 33.333 0.00 0.00 33.12 3.51
2071 2155 7.096640 CGCCATAAAAGTTTAACAACAACTCAG 60.097 37.037 0.00 0.00 33.12 3.35
2097 2181 7.359933 GGAAGATCATAAGATGTCTTCGCAATC 60.360 40.741 16.62 0.32 42.14 2.67
2098 2182 6.426328 GGAAGATCATAAGATGTCTTCGCAAT 59.574 38.462 16.62 0.00 42.14 3.56
2102 2186 5.925397 CAGGGAAGATCATAAGATGTCTTCG 59.075 44.000 16.62 0.00 42.14 3.79
2284 2383 9.509956 TTTGGCTGTTTGTTATACTACTATGTT 57.490 29.630 0.00 0.00 0.00 2.71
2350 2449 7.111466 GGAGTGAGTACGTCCTAATATCCTAT 58.889 42.308 0.00 0.00 0.00 2.57
2372 2471 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
2373 2472 3.700539 TGATACAAGTATTTCCGGACGGA 59.299 43.478 1.83 9.76 43.52 4.69
2374 2473 4.049546 TGATACAAGTATTTCCGGACGG 57.950 45.455 1.83 3.96 0.00 4.79
2375 2474 6.411630 TTTTGATACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
2376 2475 7.981142 TCATTTTGATACAAGTATTTCCGGAC 58.019 34.615 1.83 0.00 0.00 4.79
2377 2476 8.568676 TTCATTTTGATACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 0.00 5.14
2378 2477 9.236691 CATTCATTTTGATACAAGTATTTCCGG 57.763 33.333 0.00 0.00 0.00 5.14
2456 2555 9.337091 CGTCCGAAAATACTTGTTATTCAAATT 57.663 29.630 0.00 0.00 35.48 1.82
2457 2556 7.966204 CCGTCCGAAAATACTTGTTATTCAAAT 59.034 33.333 0.00 0.00 35.48 2.32
2458 2557 7.172875 TCCGTCCGAAAATACTTGTTATTCAAA 59.827 33.333 0.00 0.00 35.48 2.69
2459 2558 6.649973 TCCGTCCGAAAATACTTGTTATTCAA 59.350 34.615 0.00 0.00 29.39 2.69
2460 2559 6.164876 TCCGTCCGAAAATACTTGTTATTCA 58.835 36.000 0.00 0.00 29.39 2.57
2461 2560 6.238022 CCTCCGTCCGAAAATACTTGTTATTC 60.238 42.308 0.00 0.00 29.39 1.75
2462 2561 5.583457 CCTCCGTCCGAAAATACTTGTTATT 59.417 40.000 0.00 0.00 31.07 1.40
2463 2562 5.114081 CCTCCGTCCGAAAATACTTGTTAT 58.886 41.667 0.00 0.00 0.00 1.89
2464 2563 4.497300 CCTCCGTCCGAAAATACTTGTTA 58.503 43.478 0.00 0.00 0.00 2.41
2465 2564 3.332034 CCTCCGTCCGAAAATACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
2466 2565 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2467 2566 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2468 2567 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2469 2568 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2470 2569 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2471 2570 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2472 2571 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2473 2572 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2474 2573 1.308069 CGTACTCCCTCCGTCCGAAA 61.308 60.000 0.00 0.00 0.00 3.46
2475 2574 1.746615 CGTACTCCCTCCGTCCGAA 60.747 63.158 0.00 0.00 0.00 4.30
2476 2575 1.613317 TACGTACTCCCTCCGTCCGA 61.613 60.000 0.00 0.00 36.12 4.55
2477 2576 1.153369 TACGTACTCCCTCCGTCCG 60.153 63.158 0.00 0.00 36.12 4.79
2478 2577 1.432270 CGTACGTACTCCCTCCGTCC 61.432 65.000 22.55 0.00 36.12 4.79
2479 2578 0.460284 TCGTACGTACTCCCTCCGTC 60.460 60.000 22.55 0.00 36.12 4.79
2480 2579 0.741221 GTCGTACGTACTCCCTCCGT 60.741 60.000 22.55 0.00 38.53 4.69
2481 2580 1.756375 CGTCGTACGTACTCCCTCCG 61.756 65.000 22.55 8.51 36.74 4.63
2482 2581 2.009888 CGTCGTACGTACTCCCTCC 58.990 63.158 22.55 4.11 36.74 4.30
2494 2593 4.111016 CAGAGGCGCCACGTCGTA 62.111 66.667 31.54 0.00 36.23 3.43
2498 2597 2.172483 AAAGATCAGAGGCGCCACGT 62.172 55.000 31.54 14.19 0.00 4.49
2530 2629 6.303021 GGTCTAACTGTACCGATCTCTAAG 57.697 45.833 0.00 0.00 0.00 2.18
2637 2736 3.103447 TCACTTCACTGCTCTTCACTG 57.897 47.619 0.00 0.00 0.00 3.66
2642 2754 4.281941 TCACAGTATCACTTCACTGCTCTT 59.718 41.667 1.78 0.00 44.89 2.85
2674 2813 4.844349 ACTGTGCCAGTAGTATTTCCAT 57.156 40.909 6.10 0.00 43.46 3.41
2675 2814 4.634012 AACTGTGCCAGTAGTATTTCCA 57.366 40.909 8.07 0.00 44.62 3.53
2676 2815 5.296813 CAAACTGTGCCAGTAGTATTTCC 57.703 43.478 8.07 0.00 44.62 3.13
2698 2837 0.861837 CTCGACAATATGCTTCCCGC 59.138 55.000 0.00 0.00 39.77 6.13
2699 2838 2.225068 ACTCGACAATATGCTTCCCG 57.775 50.000 0.00 0.00 0.00 5.14
2700 2839 6.619801 AATTAACTCGACAATATGCTTCCC 57.380 37.500 0.00 0.00 0.00 3.97
2701 2840 8.062448 GTGTAATTAACTCGACAATATGCTTCC 58.938 37.037 0.00 0.00 0.00 3.46
2702 2841 8.600625 TGTGTAATTAACTCGACAATATGCTTC 58.399 33.333 0.00 0.00 0.00 3.86
2818 2959 8.664211 ACAAAAACTCAAAAGTTGTGGTAAAA 57.336 26.923 0.00 0.00 45.07 1.52
2945 3086 4.652822 CCACCTTTTTCCTGCTTAGTACT 58.347 43.478 0.00 0.00 0.00 2.73
2947 3088 3.181438 TGCCACCTTTTTCCTGCTTAGTA 60.181 43.478 0.00 0.00 0.00 1.82
3572 3718 5.427378 TGTGTAACATAGCAGTGTGCATAT 58.573 37.500 1.08 0.00 45.67 1.78
3600 3746 0.179137 CTTCTATGTGGCGCTGACGA 60.179 55.000 7.64 0.00 43.93 4.20
3617 3763 1.550976 CTCTAGGCGACAAGTTCCCTT 59.449 52.381 0.00 0.00 0.00 3.95
3774 3921 1.452145 AACCACAACTTCGCGGCAAT 61.452 50.000 6.13 0.00 0.00 3.56
3810 3957 4.876679 TCAAATGTTGTTACCACGACTTCA 59.123 37.500 0.00 0.00 38.09 3.02
3811 3958 5.412526 TCAAATGTTGTTACCACGACTTC 57.587 39.130 0.00 0.00 38.09 3.01
3813 3960 6.385649 AATTCAAATGTTGTTACCACGACT 57.614 33.333 0.00 0.00 38.09 4.18
3816 3963 7.843686 GTCAAAAATTCAAATGTTGTTACCACG 59.156 33.333 0.00 0.00 0.00 4.94
3824 3971 8.229137 ACACTGTTGTCAAAAATTCAAATGTTG 58.771 29.630 0.00 0.00 0.00 3.33
3825 3972 8.321650 ACACTGTTGTCAAAAATTCAAATGTT 57.678 26.923 0.00 0.00 0.00 2.71
3826 3973 7.903995 ACACTGTTGTCAAAAATTCAAATGT 57.096 28.000 0.00 0.00 0.00 2.71
3827 3974 9.852481 CATACACTGTTGTCAAAAATTCAAATG 57.148 29.630 0.00 0.00 37.15 2.32
3828 3975 9.598517 ACATACACTGTTGTCAAAAATTCAAAT 57.401 25.926 0.00 0.00 37.15 2.32
3829 3976 8.994429 ACATACACTGTTGTCAAAAATTCAAA 57.006 26.923 0.00 0.00 37.15 2.69
3830 3977 8.994429 AACATACACTGTTGTCAAAAATTCAA 57.006 26.923 0.00 0.00 46.37 2.69
3850 3997 2.226330 ACGTTCAGCTGCCAAAACATA 58.774 42.857 9.47 0.00 0.00 2.29
4302 4449 3.536498 GAGTTGGCGTTGGCGTTGG 62.536 63.158 0.00 0.00 41.24 3.77
4319 4466 0.250166 CTGATGCTCATGGCCATCGA 60.250 55.000 17.61 15.69 40.92 3.59
4393 4540 2.541178 CCGAGGCGTGTCAATAGTACTC 60.541 54.545 0.00 0.00 0.00 2.59
4395 4542 1.836383 CCGAGGCGTGTCAATAGTAC 58.164 55.000 0.00 0.00 0.00 2.73
4396 4543 0.101759 GCCGAGGCGTGTCAATAGTA 59.898 55.000 0.00 0.00 0.00 1.82
4425 4580 2.565210 TCGATCACATTTGCATTGCC 57.435 45.000 6.12 0.00 0.00 4.52
4432 4587 2.033407 GGCAGTCGATCGATCACATTTG 60.033 50.000 22.50 14.83 0.00 2.32
4452 4607 3.261981 ACTTATTAGGTCCGCAGTTGG 57.738 47.619 0.00 0.00 0.00 3.77
4453 4608 6.103997 TCTTAACTTATTAGGTCCGCAGTTG 58.896 40.000 0.00 0.00 0.00 3.16
4458 4613 4.505556 CGGTTCTTAACTTATTAGGTCCGC 59.494 45.833 0.00 0.00 33.50 5.54
4460 4615 4.813161 GGCGGTTCTTAACTTATTAGGTCC 59.187 45.833 0.00 0.00 0.00 4.46
4486 4641 1.296056 CGTACCTTCCCTGCAAACCG 61.296 60.000 0.00 0.00 0.00 4.44
4615 4773 9.575783 GCGTAATTAATCACCAAGGAAAATTAA 57.424 29.630 0.00 1.24 0.00 1.40
4619 4777 6.383415 GTGCGTAATTAATCACCAAGGAAAA 58.617 36.000 6.96 0.00 0.00 2.29
4620 4778 5.391097 CGTGCGTAATTAATCACCAAGGAAA 60.391 40.000 10.84 0.00 0.00 3.13
4622 4780 3.619483 CGTGCGTAATTAATCACCAAGGA 59.381 43.478 10.84 0.00 0.00 3.36
4623 4781 3.787476 GCGTGCGTAATTAATCACCAAGG 60.787 47.826 10.84 0.00 0.00 3.61
4624 4782 3.181515 TGCGTGCGTAATTAATCACCAAG 60.182 43.478 10.84 0.00 0.00 3.61
4625 4783 2.742589 TGCGTGCGTAATTAATCACCAA 59.257 40.909 10.84 0.76 0.00 3.67
4626 4784 2.347731 TGCGTGCGTAATTAATCACCA 58.652 42.857 10.84 8.18 0.00 4.17
4627 4785 3.001838 TGATGCGTGCGTAATTAATCACC 59.998 43.478 10.84 6.43 0.00 4.02
4628 4786 4.190304 TGATGCGTGCGTAATTAATCAC 57.810 40.909 7.81 7.81 0.00 3.06
4630 4788 4.666176 CAGTTGATGCGTGCGTAATTAATC 59.334 41.667 0.00 0.00 0.00 1.75
4631 4789 4.331443 TCAGTTGATGCGTGCGTAATTAAT 59.669 37.500 0.00 0.00 0.00 1.40
4633 4791 3.061563 GTCAGTTGATGCGTGCGTAATTA 59.938 43.478 0.00 0.00 0.00 1.40
4634 4792 2.073056 TCAGTTGATGCGTGCGTAATT 58.927 42.857 0.00 0.00 0.00 1.40
4635 4793 1.393539 GTCAGTTGATGCGTGCGTAAT 59.606 47.619 0.00 0.00 0.00 1.89
4636 4794 0.787787 GTCAGTTGATGCGTGCGTAA 59.212 50.000 0.00 0.00 0.00 3.18
4650 4824 4.377708 TGCGCGCTGATGGTCAGT 62.378 61.111 33.29 0.00 45.94 3.41
4668 4842 1.582424 CGTGTTTGTGTGGTGCGTG 60.582 57.895 0.00 0.00 0.00 5.34
4684 4858 2.400269 TTTAAAGGGACGGGCTGCGT 62.400 55.000 0.00 0.00 0.00 5.24
4859 5037 2.032071 AGGTTGTGCGTGTAGGGC 59.968 61.111 0.00 0.00 0.00 5.19
4923 5101 1.563111 GACCATGCAAAATCCATGCG 58.437 50.000 0.00 0.00 46.76 4.73
4984 5162 1.422388 CCGATGTCTCAGTGTGTGTG 58.578 55.000 0.00 0.00 0.00 3.82
4985 5163 0.319900 GCCGATGTCTCAGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
5040 5220 0.036765 AAATCGCGTCAGTAGGGCAA 60.037 50.000 5.77 0.00 0.00 4.52
5045 5225 3.921021 ACAGAAAGAAATCGCGTCAGTAG 59.079 43.478 5.77 0.00 0.00 2.57
5091 5273 0.763652 TCGATACCCCGAGTAGCTCT 59.236 55.000 0.00 0.00 35.10 4.09
5238 5420 0.745486 CATCGGACAGCATGCCTTCA 60.745 55.000 15.66 0.00 42.53 3.02
5291 5473 6.251655 ACTTTGCATGCTTTTCTAAGAGAG 57.748 37.500 20.33 2.12 32.92 3.20
5409 5592 9.612620 CTCAACTAAACAAATCCACAAATCTAC 57.387 33.333 0.00 0.00 0.00 2.59
5558 5745 2.433318 GAGGCAGACTGACGGCAC 60.433 66.667 6.65 0.00 41.24 5.01
5576 5763 2.305095 CCTTGAGGCCACAGGAGAT 58.695 57.895 13.97 0.00 0.00 2.75
5619 5810 1.002502 GCCCTTCCGCCTACAAAGT 60.003 57.895 0.00 0.00 0.00 2.66
5621 5812 1.198759 AGAGCCCTTCCGCCTACAAA 61.199 55.000 0.00 0.00 0.00 2.83
5626 5817 2.069165 AAAACAGAGCCCTTCCGCCT 62.069 55.000 0.00 0.00 0.00 5.52
5655 5847 2.920490 CAAACACCAACAAAACTCACGG 59.080 45.455 0.00 0.00 0.00 4.94
5656 5848 3.570559 ACAAACACCAACAAAACTCACG 58.429 40.909 0.00 0.00 0.00 4.35
5657 5849 5.746721 GGATACAAACACCAACAAAACTCAC 59.253 40.000 0.00 0.00 0.00 3.51
5669 5861 1.066430 TCCGAGCAGGATACAAACACC 60.066 52.381 0.00 0.00 45.98 4.16
5693 5885 3.739519 GCACTAACAGGACATGAGCTAGG 60.740 52.174 0.00 0.00 0.00 3.02
5695 5887 3.099905 AGCACTAACAGGACATGAGCTA 58.900 45.455 0.00 0.00 0.00 3.32
5698 5890 4.199432 AGAAGCACTAACAGGACATGAG 57.801 45.455 0.00 0.00 0.00 2.90
5699 5891 4.382040 GCTAGAAGCACTAACAGGACATGA 60.382 45.833 0.00 0.00 41.89 3.07
5700 5892 3.868077 GCTAGAAGCACTAACAGGACATG 59.132 47.826 0.00 0.00 41.89 3.21
5701 5893 3.118592 GGCTAGAAGCACTAACAGGACAT 60.119 47.826 0.00 0.00 44.75 3.06
5702 5894 2.233922 GGCTAGAAGCACTAACAGGACA 59.766 50.000 0.00 0.00 44.75 4.02
5706 5898 2.480416 CGGAGGCTAGAAGCACTAACAG 60.480 54.545 0.00 0.00 44.75 3.16
5707 5899 1.476891 CGGAGGCTAGAAGCACTAACA 59.523 52.381 0.00 0.00 44.75 2.41
5708 5900 1.477295 ACGGAGGCTAGAAGCACTAAC 59.523 52.381 0.00 0.00 44.75 2.34
5710 5902 1.390565 GACGGAGGCTAGAAGCACTA 58.609 55.000 0.00 0.00 44.75 2.74
5711 5903 1.324005 GGACGGAGGCTAGAAGCACT 61.324 60.000 0.00 0.00 44.75 4.40
5737 5973 1.883275 CCTCCGACGATGCTAGAATCT 59.117 52.381 9.13 0.00 0.00 2.40
5739 5975 1.609555 GTCCTCCGACGATGCTAGAAT 59.390 52.381 0.00 0.00 0.00 2.40
5758 5994 3.873801 GCCATAGACAAACCTCCACATGT 60.874 47.826 0.00 0.00 0.00 3.21
5760 5996 2.680805 CGCCATAGACAAACCTCCACAT 60.681 50.000 0.00 0.00 0.00 3.21
5813 6059 2.224606 AGACATGCAAACACAGACTGG 58.775 47.619 7.51 0.00 0.00 4.00
5818 6064 5.179929 TCAATCTGTAGACATGCAAACACAG 59.820 40.000 0.00 0.47 35.76 3.66
5825 6071 4.164796 AGGGATTCAATCTGTAGACATGCA 59.835 41.667 0.00 0.00 0.00 3.96
5838 6094 3.900601 AGCGTAGATCAGAGGGATTCAAT 59.099 43.478 0.00 0.00 36.00 2.57
5867 6123 2.202824 CAAGAACCGCCGCCGATA 60.203 61.111 0.00 0.00 36.29 2.92
5909 6165 1.040646 AGGAAGTTGTCGTGCTGAGA 58.959 50.000 0.00 0.00 0.00 3.27
5921 6177 6.559429 TCTTGTAGTAGAGGGTTAGGAAGTT 58.441 40.000 0.00 0.00 0.00 2.66
5933 6189 5.162075 CGGACAAACCTTCTTGTAGTAGAG 58.838 45.833 0.00 0.00 39.63 2.43
5962 6218 1.306141 TCATCGCCCCTTCCTCACT 60.306 57.895 0.00 0.00 0.00 3.41
5969 6225 4.473520 CCGCTGTCATCGCCCCTT 62.474 66.667 0.00 0.00 0.00 3.95
6018 6276 1.012486 GTTCGTCAACCACCTAGCGG 61.012 60.000 0.00 0.00 0.00 5.52
6030 6288 6.479972 AGAATTACATATCCAGGTTCGTCA 57.520 37.500 0.00 0.00 0.00 4.35
6031 6289 7.280205 ACAAAGAATTACATATCCAGGTTCGTC 59.720 37.037 0.00 0.00 0.00 4.20
6121 6385 6.491745 TGATTTCCTGTATTTTTAGGTGCACA 59.508 34.615 20.43 0.00 35.54 4.57
6155 6419 6.870971 TTGTACGCCAAGAAGAACTTTATT 57.129 33.333 0.00 0.00 36.61 1.40
6159 6423 5.767816 AAATTGTACGCCAAGAAGAACTT 57.232 34.783 0.00 0.00 36.25 2.66
6161 6425 5.332280 GCAAAAATTGTACGCCAAGAAGAAC 60.332 40.000 0.00 0.00 36.25 3.01
6183 6447 0.376852 GCTTCAAACACTCACGTGCA 59.623 50.000 11.67 0.00 45.10 4.57
6187 6451 0.940126 AGCAGCTTCAAACACTCACG 59.060 50.000 0.00 0.00 0.00 4.35
6208 6472 0.318120 GGCCTCTGCTAGAGATGCTC 59.682 60.000 12.91 0.00 45.07 4.26
6209 6473 1.120795 GGGCCTCTGCTAGAGATGCT 61.121 60.000 0.84 0.00 45.07 3.79
6220 6485 3.459969 AGGGATTAAGTTTAGGGCCTCTG 59.540 47.826 10.74 0.00 0.00 3.35
6222 6487 3.458487 TGAGGGATTAAGTTTAGGGCCTC 59.542 47.826 10.74 0.00 0.00 4.70
6225 6490 4.401519 GGTTTGAGGGATTAAGTTTAGGGC 59.598 45.833 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.