Multiple sequence alignment - TraesCS1B01G227000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G227000 chr1B 100.000 4080 0 0 1 4080 407601662 407597583 0.000000e+00 7535
1 TraesCS1B01G227000 chr1B 93.176 381 21 5 56 432 352768768 352768389 4.610000e-154 555
2 TraesCS1B01G227000 chr1B 92.857 378 23 4 58 432 394447539 394447163 2.770000e-151 545
3 TraesCS1B01G227000 chr1B 97.021 235 6 1 462 695 303723264 303723030 1.060000e-105 394
4 TraesCS1B01G227000 chr1B 96.596 235 7 1 462 695 322441421 322441655 4.950000e-104 388
5 TraesCS1B01G227000 chr1B 96.581 234 7 1 462 695 256537580 256537348 1.780000e-103 387
6 TraesCS1B01G227000 chr1D 92.864 2046 99 22 2006 4030 302076239 302074220 0.000000e+00 2926
7 TraesCS1B01G227000 chr1D 94.840 1221 41 10 773 1984 302077846 302076639 0.000000e+00 1886
8 TraesCS1B01G227000 chr1A 93.736 1804 77 8 756 2529 376758160 376756363 0.000000e+00 2673
9 TraesCS1B01G227000 chr1A 91.728 1487 73 30 2561 4030 376756236 376754783 0.000000e+00 2019
10 TraesCS1B01G227000 chr7B 93.023 387 21 6 50 432 213430397 213430013 9.900000e-156 560
11 TraesCS1B01G227000 chr7B 92.876 379 22 5 58 432 563725748 563726125 2.770000e-151 545
12 TraesCS1B01G227000 chr7B 97.021 235 6 1 462 695 213429770 213429536 1.060000e-105 394
13 TraesCS1B01G227000 chr5A 93.158 380 22 4 57 432 353171262 353170883 4.610000e-154 555
14 TraesCS1B01G227000 chr5A 92.857 378 24 3 58 432 305519806 305519429 2.770000e-151 545
15 TraesCS1B01G227000 chr3B 93.158 380 22 4 56 432 293545652 293546030 4.610000e-154 555
16 TraesCS1B01G227000 chr3B 96.581 234 8 0 462 695 293546268 293546501 4.950000e-104 388
17 TraesCS1B01G227000 chr3B 96.596 235 7 1 462 695 676938837 676939071 4.950000e-104 388
18 TraesCS1B01G227000 chr6B 92.689 383 23 5 54 432 449992496 449992115 7.710000e-152 547
19 TraesCS1B01G227000 chr2B 92.857 378 23 4 58 432 28765268 28765644 2.770000e-151 545
20 TraesCS1B01G227000 chr5B 96.581 234 8 0 462 695 540878089 540877856 4.950000e-104 388
21 TraesCS1B01G227000 chr4A 96.596 235 7 1 462 695 724988083 724988317 4.950000e-104 388
22 TraesCS1B01G227000 chr2A 96.581 234 8 0 462 695 344455022 344455255 4.950000e-104 388


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G227000 chr1B 407597583 407601662 4079 True 7535.0 7535 100.0000 1 4080 1 chr1B.!!$R5 4079
1 TraesCS1B01G227000 chr1D 302074220 302077846 3626 True 2406.0 2926 93.8520 773 4030 2 chr1D.!!$R1 3257
2 TraesCS1B01G227000 chr1A 376754783 376758160 3377 True 2346.0 2673 92.7320 756 4030 2 chr1A.!!$R1 3274
3 TraesCS1B01G227000 chr7B 213429536 213430397 861 True 477.0 560 95.0220 50 695 2 chr7B.!!$R1 645
4 TraesCS1B01G227000 chr3B 293545652 293546501 849 False 471.5 555 94.8695 56 695 2 chr3B.!!$F2 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 981 0.320697 AACCCGAGTTAGCACAGTCC 59.679 55.000 0.0 0.0 33.27 3.85 F
751 982 0.542232 ACCCGAGTTAGCACAGTCCT 60.542 55.000 0.0 0.0 0.00 3.85 F
1732 1965 1.072331 AGTGGGTGAGTTGTTAGCTGG 59.928 52.381 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2771 1.166531 GGCACAACCGAGACAGCTTT 61.167 55.000 0.00 0.0 0.00 3.51 R
2152 2772 1.598130 GGCACAACCGAGACAGCTT 60.598 57.895 0.00 0.0 0.00 3.74 R
3715 4466 0.386478 GTACGTCGCGTCCAACTTCT 60.386 55.000 5.77 0.0 41.54 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.661304 ACGAAAGGAGTAGTTAGAAAGGAA 57.339 37.500 0.00 0.00 0.00 3.36
24 25 6.689554 ACGAAAGGAGTAGTTAGAAAGGAAG 58.310 40.000 0.00 0.00 0.00 3.46
25 26 6.492772 ACGAAAGGAGTAGTTAGAAAGGAAGA 59.507 38.462 0.00 0.00 0.00 2.87
26 27 7.030768 CGAAAGGAGTAGTTAGAAAGGAAGAG 58.969 42.308 0.00 0.00 0.00 2.85
27 28 7.094291 CGAAAGGAGTAGTTAGAAAGGAAGAGA 60.094 40.741 0.00 0.00 0.00 3.10
28 29 8.493787 AAAGGAGTAGTTAGAAAGGAAGAGAA 57.506 34.615 0.00 0.00 0.00 2.87
29 30 8.493787 AAGGAGTAGTTAGAAAGGAAGAGAAA 57.506 34.615 0.00 0.00 0.00 2.52
30 31 8.129496 AGGAGTAGTTAGAAAGGAAGAGAAAG 57.871 38.462 0.00 0.00 0.00 2.62
31 32 7.731235 AGGAGTAGTTAGAAAGGAAGAGAAAGT 59.269 37.037 0.00 0.00 0.00 2.66
32 33 7.815549 GGAGTAGTTAGAAAGGAAGAGAAAGTG 59.184 40.741 0.00 0.00 0.00 3.16
33 34 7.672240 AGTAGTTAGAAAGGAAGAGAAAGTGG 58.328 38.462 0.00 0.00 0.00 4.00
34 35 5.870706 AGTTAGAAAGGAAGAGAAAGTGGG 58.129 41.667 0.00 0.00 0.00 4.61
35 36 5.607171 AGTTAGAAAGGAAGAGAAAGTGGGA 59.393 40.000 0.00 0.00 0.00 4.37
36 37 6.273495 AGTTAGAAAGGAAGAGAAAGTGGGAT 59.727 38.462 0.00 0.00 0.00 3.85
37 38 5.172687 AGAAAGGAAGAGAAAGTGGGATC 57.827 43.478 0.00 0.00 0.00 3.36
38 39 4.018870 AGAAAGGAAGAGAAAGTGGGATCC 60.019 45.833 1.92 1.92 0.00 3.36
39 40 2.921221 AGGAAGAGAAAGTGGGATCCA 58.079 47.619 15.23 0.00 0.00 3.41
40 41 3.468850 AGGAAGAGAAAGTGGGATCCAT 58.531 45.455 15.23 0.00 35.28 3.41
41 42 4.635473 AGGAAGAGAAAGTGGGATCCATA 58.365 43.478 15.23 0.00 35.28 2.74
42 43 4.657969 AGGAAGAGAAAGTGGGATCCATAG 59.342 45.833 15.23 0.00 35.28 2.23
43 44 4.656112 GGAAGAGAAAGTGGGATCCATAGA 59.344 45.833 15.23 0.00 35.28 1.98
44 45 5.131142 GGAAGAGAAAGTGGGATCCATAGAA 59.869 44.000 15.23 0.00 35.28 2.10
45 46 6.353082 GGAAGAGAAAGTGGGATCCATAGAAA 60.353 42.308 15.23 0.00 35.28 2.52
46 47 6.245890 AGAGAAAGTGGGATCCATAGAAAG 57.754 41.667 15.23 0.00 35.28 2.62
47 48 5.966935 AGAGAAAGTGGGATCCATAGAAAGA 59.033 40.000 15.23 0.00 35.28 2.52
48 49 6.099557 AGAGAAAGTGGGATCCATAGAAAGAG 59.900 42.308 15.23 0.00 35.28 2.85
49 50 5.966935 AGAAAGTGGGATCCATAGAAAGAGA 59.033 40.000 15.23 0.00 35.28 3.10
50 51 6.445139 AGAAAGTGGGATCCATAGAAAGAGAA 59.555 38.462 15.23 0.00 35.28 2.87
51 52 6.642733 AAGTGGGATCCATAGAAAGAGAAA 57.357 37.500 15.23 0.00 35.28 2.52
52 53 6.642733 AGTGGGATCCATAGAAAGAGAAAA 57.357 37.500 15.23 0.00 35.28 2.29
53 54 6.657875 AGTGGGATCCATAGAAAGAGAAAAG 58.342 40.000 15.23 0.00 35.28 2.27
54 55 5.825151 GTGGGATCCATAGAAAGAGAAAAGG 59.175 44.000 15.23 0.00 35.28 3.11
79 80 0.613012 GCCAATTCCAGTTCTGCCCT 60.613 55.000 0.00 0.00 0.00 5.19
83 84 4.026052 CCAATTCCAGTTCTGCCCTTAAT 58.974 43.478 0.00 0.00 0.00 1.40
112 113 3.054361 CCACTACTCAGTTTTGCCCCTAT 60.054 47.826 0.00 0.00 30.46 2.57
113 114 4.163458 CCACTACTCAGTTTTGCCCCTATA 59.837 45.833 0.00 0.00 30.46 1.31
142 143 1.228552 GCTCAGTTTTGCCCCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
151 152 2.119484 TTGCCCCTCCACCGTTAGTG 62.119 60.000 0.00 0.00 46.83 2.74
166 167 8.192774 CCACCGTTAGTGTCACTTATAGAAATA 58.807 37.037 11.54 0.00 45.74 1.40
168 169 8.964772 ACCGTTAGTGTCACTTATAGAAATACT 58.035 33.333 11.54 0.00 0.00 2.12
176 177 9.719355 TGTCACTTATAGAAATACTCTTTTGCA 57.281 29.630 0.00 0.00 35.41 4.08
184 185 7.907214 AGAAATACTCTTTTGCATCGTTACT 57.093 32.000 0.00 0.00 0.00 2.24
292 296 1.830368 GCAAGGCGCGTGCAAATTTT 61.830 50.000 24.79 5.73 45.35 1.82
448 466 3.438087 TGCACATTTTTGTTGTGTTTGGG 59.562 39.130 5.78 0.00 44.96 4.12
456 484 2.298610 TGTTGTGTTTGGGCATCGTAA 58.701 42.857 0.00 0.00 0.00 3.18
695 926 2.019807 AGTGGGTTCGAGTTAAGGGA 57.980 50.000 0.00 0.00 0.00 4.20
696 927 2.332117 AGTGGGTTCGAGTTAAGGGAA 58.668 47.619 0.00 0.00 0.00 3.97
697 928 2.707257 AGTGGGTTCGAGTTAAGGGAAA 59.293 45.455 0.00 0.00 0.00 3.13
698 929 3.329814 AGTGGGTTCGAGTTAAGGGAAAT 59.670 43.478 0.00 0.00 0.00 2.17
699 930 3.439129 GTGGGTTCGAGTTAAGGGAAATG 59.561 47.826 0.00 0.00 0.00 2.32
700 931 3.073356 TGGGTTCGAGTTAAGGGAAATGT 59.927 43.478 0.00 0.00 0.00 2.71
701 932 4.286549 TGGGTTCGAGTTAAGGGAAATGTA 59.713 41.667 0.00 0.00 0.00 2.29
702 933 4.633126 GGGTTCGAGTTAAGGGAAATGTAC 59.367 45.833 0.00 0.00 0.00 2.90
703 934 4.633126 GGTTCGAGTTAAGGGAAATGTACC 59.367 45.833 0.00 0.00 0.00 3.34
704 935 5.240121 GTTCGAGTTAAGGGAAATGTACCA 58.760 41.667 0.00 0.00 0.00 3.25
705 936 5.687166 TCGAGTTAAGGGAAATGTACCAT 57.313 39.130 0.00 0.00 0.00 3.55
706 937 5.667466 TCGAGTTAAGGGAAATGTACCATC 58.333 41.667 0.00 0.00 0.00 3.51
707 938 5.188163 TCGAGTTAAGGGAAATGTACCATCA 59.812 40.000 0.00 0.00 0.00 3.07
708 939 5.878116 CGAGTTAAGGGAAATGTACCATCAA 59.122 40.000 0.00 0.00 0.00 2.57
709 940 6.373216 CGAGTTAAGGGAAATGTACCATCAAA 59.627 38.462 0.00 0.00 0.00 2.69
710 941 7.094549 CGAGTTAAGGGAAATGTACCATCAAAA 60.095 37.037 0.00 0.00 0.00 2.44
711 942 8.485578 AGTTAAGGGAAATGTACCATCAAAAA 57.514 30.769 0.00 0.00 0.00 1.94
712 943 9.100197 AGTTAAGGGAAATGTACCATCAAAAAT 57.900 29.630 0.00 0.00 0.00 1.82
715 946 8.893563 AAGGGAAATGTACCATCAAAAATAGA 57.106 30.769 0.00 0.00 0.00 1.98
716 947 8.893563 AGGGAAATGTACCATCAAAAATAGAA 57.106 30.769 0.00 0.00 0.00 2.10
717 948 9.320295 AGGGAAATGTACCATCAAAAATAGAAA 57.680 29.630 0.00 0.00 0.00 2.52
718 949 9.936759 GGGAAATGTACCATCAAAAATAGAAAA 57.063 29.630 0.00 0.00 0.00 2.29
739 970 6.911250 AAAAAGGAAAATGATAACCCGAGT 57.089 33.333 0.00 0.00 0.00 4.18
740 971 6.911250 AAAAGGAAAATGATAACCCGAGTT 57.089 33.333 0.00 0.00 40.15 3.01
741 972 8.411991 AAAAAGGAAAATGATAACCCGAGTTA 57.588 30.769 0.00 0.00 42.54 2.24
742 973 7.625828 AAAGGAAAATGATAACCCGAGTTAG 57.374 36.000 0.00 0.00 41.66 2.34
743 974 5.123936 AGGAAAATGATAACCCGAGTTAGC 58.876 41.667 0.00 0.00 43.64 3.09
747 978 3.520290 TGATAACCCGAGTTAGCACAG 57.480 47.619 3.47 0.00 46.90 3.66
748 979 2.829720 TGATAACCCGAGTTAGCACAGT 59.170 45.455 3.47 0.00 46.90 3.55
749 980 3.119245 TGATAACCCGAGTTAGCACAGTC 60.119 47.826 3.47 0.00 46.90 3.51
750 981 0.320697 AACCCGAGTTAGCACAGTCC 59.679 55.000 0.00 0.00 33.27 3.85
751 982 0.542232 ACCCGAGTTAGCACAGTCCT 60.542 55.000 0.00 0.00 0.00 3.85
752 983 1.272313 ACCCGAGTTAGCACAGTCCTA 60.272 52.381 0.00 0.00 0.00 2.94
753 984 1.822990 CCCGAGTTAGCACAGTCCTAA 59.177 52.381 0.00 0.00 0.00 2.69
754 985 2.232941 CCCGAGTTAGCACAGTCCTAAA 59.767 50.000 0.00 0.00 0.00 1.85
871 1102 5.527511 TTACGTCGACAGTTTGTTTTGAA 57.472 34.783 17.16 0.98 0.00 2.69
873 1104 2.776225 CGTCGACAGTTTGTTTTGAAGC 59.224 45.455 17.16 0.00 0.00 3.86
874 1105 3.726486 CGTCGACAGTTTGTTTTGAAGCA 60.726 43.478 17.16 0.00 0.00 3.91
875 1106 4.162812 GTCGACAGTTTGTTTTGAAGCAA 58.837 39.130 11.55 0.00 0.00 3.91
876 1107 4.030195 GTCGACAGTTTGTTTTGAAGCAAC 59.970 41.667 11.55 0.00 0.00 4.17
911 1144 2.977178 CACGAGAGCAGAGGCCTT 59.023 61.111 6.77 0.00 42.56 4.35
1104 1337 4.749310 CGCTCCGCTGTTCCTGCT 62.749 66.667 0.00 0.00 0.00 4.24
1398 1631 4.777854 TCCCGCAGCTGGCCTAGA 62.778 66.667 17.12 1.17 40.31 2.43
1415 1648 3.568007 CCTAGAGTACAGATGCTCTCCAC 59.432 52.174 0.00 0.00 43.81 4.02
1474 1707 8.845413 TCAATTTATGGCTAATTTGTGCTTTT 57.155 26.923 0.00 0.00 33.21 2.27
1568 1801 2.421073 CTGGCAGCTTGAAATCAATCGA 59.579 45.455 0.00 0.00 35.02 3.59
1698 1931 6.099159 ACTAGTTTGTTCCTAAGTCCTGAC 57.901 41.667 0.00 0.00 0.00 3.51
1732 1965 1.072331 AGTGGGTGAGTTGTTAGCTGG 59.928 52.381 0.00 0.00 0.00 4.85
1780 2013 3.181477 TGTTTGCAGTCAAGGTCAATTGG 60.181 43.478 5.42 0.00 33.12 3.16
1794 2027 4.321230 GGTCAATTGGTTTACAGGCTTGAG 60.321 45.833 1.40 0.00 29.94 3.02
1836 2069 3.507233 TGTGGTTACTTAGGTAGACCGTG 59.493 47.826 9.91 0.00 42.08 4.94
1890 2123 3.181451 TGTTTCTCAGGTCTGATGCTTGT 60.181 43.478 0.75 0.00 39.13 3.16
1895 2128 2.302733 TCAGGTCTGATGCTTGTGCTTA 59.697 45.455 0.00 0.00 35.89 3.09
1900 2133 4.397417 GGTCTGATGCTTGTGCTTAGATTT 59.603 41.667 0.00 0.00 40.48 2.17
1948 2181 6.401394 TGATCATAAAATATCGAGGAGGCTG 58.599 40.000 0.00 0.00 0.00 4.85
1952 2185 2.103153 AATATCGAGGAGGCTGGGAA 57.897 50.000 0.00 0.00 0.00 3.97
1956 2189 2.739996 CGAGGAGGCTGGGAATGCT 61.740 63.158 0.00 0.00 0.00 3.79
2039 2659 8.997323 ACAAGAACATATGAAAAGAAGTGAGAG 58.003 33.333 10.38 0.00 0.00 3.20
2095 2715 9.261035 TCTTGCTACATTTTTAATAATTGGGGA 57.739 29.630 0.00 0.00 0.00 4.81
2161 2781 7.548967 AGATACACCTTTACTAAAGCTGTCTC 58.451 38.462 11.27 11.24 38.10 3.36
2171 2791 2.031163 GCTGTCTCGGTTGTGCCT 59.969 61.111 0.00 0.00 34.25 4.75
2172 2792 1.598130 GCTGTCTCGGTTGTGCCTT 60.598 57.895 0.00 0.00 34.25 4.35
2479 3099 9.362151 TCCACTTATTTAAATCACTTCAAAGGT 57.638 29.630 3.39 0.00 0.00 3.50
2691 3416 2.084546 GGTCACCCTTGCATTGTAGAC 58.915 52.381 0.00 0.00 0.00 2.59
2705 3430 5.466819 CATTGTAGACGAGTAGTTCAACCA 58.533 41.667 0.00 0.00 0.00 3.67
2717 3442 7.145932 AGTAGTTCAACCAAGATGCAAATAC 57.854 36.000 0.00 0.00 0.00 1.89
2926 3658 0.171007 CGTGCCCAGCATGTAAAAGG 59.829 55.000 0.55 0.00 41.91 3.11
3073 3805 0.886043 TCGACGTGGAGTTCGAGGAA 60.886 55.000 0.00 0.00 32.01 3.36
3136 3869 1.221840 CGTGGTGGAGAGGGAATGG 59.778 63.158 0.00 0.00 0.00 3.16
3172 3905 3.197790 CTGCGATTGGTGAGCCGG 61.198 66.667 0.00 0.00 37.67 6.13
3177 3910 1.212751 GATTGGTGAGCCGGTTTGC 59.787 57.895 1.90 0.00 37.67 3.68
3186 3919 2.770589 GCCGGTTTGCATATGCGGT 61.771 57.895 22.21 0.00 45.83 5.68
3428 4169 0.615331 GGGTTCAGCTGAGTCCATCA 59.385 55.000 28.68 9.53 36.21 3.07
3470 4221 1.825090 TGCTCGCCAAACATGAGATT 58.175 45.000 0.00 0.00 31.31 2.40
3483 4234 2.293677 TGAGATTGTTCATCCGGTCG 57.706 50.000 0.00 0.00 31.20 4.79
3488 4239 1.081556 TTGTTCATCCGGTCGATGCG 61.082 55.000 0.00 0.00 46.93 4.73
3519 4270 1.599240 GGGCTCGATGGCTTGATCC 60.599 63.158 8.00 0.00 41.48 3.36
3520 4271 1.958205 GGCTCGATGGCTTGATCCG 60.958 63.158 0.00 0.00 38.32 4.18
3522 4273 1.068753 CTCGATGGCTTGATCCGCT 59.931 57.895 4.39 0.00 0.00 5.52
3579 4330 3.058450 GTGCTCATCTGAGAATGGATCG 58.942 50.000 11.34 0.00 44.74 3.69
3580 4331 2.036862 TGCTCATCTGAGAATGGATCGG 59.963 50.000 11.34 0.00 44.74 4.18
3597 4348 2.187946 GGGGATCGTCAGCCACAG 59.812 66.667 0.00 0.00 0.00 3.66
3631 4382 3.006940 TGTGAAATGACCATAGCGGAAC 58.993 45.455 0.00 0.00 38.63 3.62
3742 4493 2.256158 CGCGACGTACAGGACCAA 59.744 61.111 0.00 0.00 0.00 3.67
3839 4590 0.602106 TGAGAAGACAGCAGCAGCAC 60.602 55.000 3.17 0.00 45.49 4.40
3840 4591 0.602106 GAGAAGACAGCAGCAGCACA 60.602 55.000 3.17 0.00 45.49 4.57
3841 4592 0.603172 AGAAGACAGCAGCAGCACAG 60.603 55.000 3.17 0.00 45.49 3.66
3843 4594 0.036448 AAGACAGCAGCAGCACAGAT 59.964 50.000 3.17 0.00 45.49 2.90
3845 4596 0.672711 GACAGCAGCAGCACAGATGA 60.673 55.000 3.17 0.00 45.49 2.92
3846 4597 0.954449 ACAGCAGCAGCACAGATGAC 60.954 55.000 3.17 0.00 45.49 3.06
3847 4598 0.953960 CAGCAGCAGCACAGATGACA 60.954 55.000 3.17 0.00 45.49 3.58
3848 4599 0.673956 AGCAGCAGCACAGATGACAG 60.674 55.000 3.17 0.00 45.49 3.51
3849 4600 0.954449 GCAGCAGCACAGATGACAGT 60.954 55.000 0.00 0.00 41.58 3.55
3850 4601 1.077123 CAGCAGCACAGATGACAGTC 58.923 55.000 0.00 0.00 0.00 3.51
3851 4602 0.683412 AGCAGCACAGATGACAGTCA 59.317 50.000 5.50 5.50 0.00 3.41
3852 4603 1.077123 GCAGCACAGATGACAGTCAG 58.923 55.000 9.64 0.00 0.00 3.51
3853 4604 1.077123 CAGCACAGATGACAGTCAGC 58.923 55.000 11.05 11.05 31.96 4.26
3855 4606 0.795085 GCACAGATGACAGTCAGCAC 59.205 55.000 20.72 8.96 34.77 4.40
3856 4607 1.066136 CACAGATGACAGTCAGCACG 58.934 55.000 20.72 13.20 34.77 5.34
3857 4608 0.668706 ACAGATGACAGTCAGCACGC 60.669 55.000 20.72 2.35 34.77 5.34
3858 4609 1.445066 AGATGACAGTCAGCACGCG 60.445 57.895 20.72 3.53 34.77 6.01
3859 4610 1.444383 GATGACAGTCAGCACGCGA 60.444 57.895 15.93 0.00 32.15 5.87
3860 4611 1.678269 GATGACAGTCAGCACGCGAC 61.678 60.000 15.93 4.00 32.15 5.19
3861 4612 2.049985 GACAGTCAGCACGCGACT 60.050 61.111 15.93 6.90 44.55 4.18
3862 4613 2.049985 ACAGTCAGCACGCGACTC 60.050 61.111 15.93 0.14 41.80 3.36
3863 4614 3.168604 CAGTCAGCACGCGACTCG 61.169 66.667 15.93 5.17 41.80 4.18
3884 4639 4.151689 TCGTTTATTGCGAGGAAGAAACAG 59.848 41.667 21.07 15.41 37.03 3.16
3889 4644 1.230635 GCGAGGAAGAAACAGCTGCA 61.231 55.000 15.27 0.00 0.00 4.41
4035 4790 4.148825 GCCTCCGAGTGCGATGGT 62.149 66.667 0.00 0.00 40.82 3.55
4036 4791 2.579201 CCTCCGAGTGCGATGGTT 59.421 61.111 0.00 0.00 40.82 3.67
4037 4792 1.079127 CCTCCGAGTGCGATGGTTT 60.079 57.895 0.00 0.00 40.82 3.27
4038 4793 1.361668 CCTCCGAGTGCGATGGTTTG 61.362 60.000 0.00 0.00 40.82 2.93
4039 4794 0.670546 CTCCGAGTGCGATGGTTTGT 60.671 55.000 0.00 0.00 40.82 2.83
4040 4795 0.250124 TCCGAGTGCGATGGTTTGTT 60.250 50.000 0.00 0.00 40.82 2.83
4041 4796 0.110238 CCGAGTGCGATGGTTTGTTG 60.110 55.000 0.00 0.00 40.82 3.33
4042 4797 0.110238 CGAGTGCGATGGTTTGTTGG 60.110 55.000 0.00 0.00 40.82 3.77
4043 4798 0.951558 GAGTGCGATGGTTTGTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
4044 4799 0.667993 AGTGCGATGGTTTGTTGGTG 59.332 50.000 0.00 0.00 0.00 4.17
4045 4800 0.939106 GTGCGATGGTTTGTTGGTGC 60.939 55.000 0.00 0.00 0.00 5.01
4046 4801 1.106351 TGCGATGGTTTGTTGGTGCT 61.106 50.000 0.00 0.00 0.00 4.40
4047 4802 0.387239 GCGATGGTTTGTTGGTGCTC 60.387 55.000 0.00 0.00 0.00 4.26
4048 4803 0.950836 CGATGGTTTGTTGGTGCTCA 59.049 50.000 0.00 0.00 0.00 4.26
4049 4804 1.334960 CGATGGTTTGTTGGTGCTCAC 60.335 52.381 0.00 0.00 0.00 3.51
4050 4805 0.667993 ATGGTTTGTTGGTGCTCACG 59.332 50.000 0.00 0.00 0.00 4.35
4051 4806 1.299089 GGTTTGTTGGTGCTCACGC 60.299 57.895 0.00 0.00 0.00 5.34
4052 4807 1.724582 GGTTTGTTGGTGCTCACGCT 61.725 55.000 0.00 0.00 36.97 5.07
4053 4808 0.592247 GTTTGTTGGTGCTCACGCTG 60.592 55.000 0.00 0.00 36.97 5.18
4054 4809 1.029408 TTTGTTGGTGCTCACGCTGT 61.029 50.000 0.00 0.00 36.97 4.40
4055 4810 1.713937 TTGTTGGTGCTCACGCTGTG 61.714 55.000 2.79 2.79 36.97 3.66
4056 4811 2.180204 GTTGGTGCTCACGCTGTGT 61.180 57.895 8.22 0.00 36.97 3.72
4064 4819 3.942500 CACGCTGTGTGGAGACTG 58.057 61.111 13.38 0.00 45.21 3.51
4065 4820 1.363807 CACGCTGTGTGGAGACTGA 59.636 57.895 13.38 0.00 45.21 3.41
4066 4821 0.249447 CACGCTGTGTGGAGACTGAA 60.249 55.000 13.38 0.00 45.21 3.02
4067 4822 0.464036 ACGCTGTGTGGAGACTGAAA 59.536 50.000 0.00 0.00 0.00 2.69
4068 4823 1.134521 ACGCTGTGTGGAGACTGAAAA 60.135 47.619 0.00 0.00 0.00 2.29
4069 4824 1.939934 CGCTGTGTGGAGACTGAAAAA 59.060 47.619 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.921914 TCTTCCTTTCTAACTACTCCTTTCG 58.078 40.000 0.00 0.00 0.00 3.46
2 3 8.124808 TCTCTTCCTTTCTAACTACTCCTTTC 57.875 38.462 0.00 0.00 0.00 2.62
4 5 8.493787 TTTCTCTTCCTTTCTAACTACTCCTT 57.506 34.615 0.00 0.00 0.00 3.36
5 6 7.731235 ACTTTCTCTTCCTTTCTAACTACTCCT 59.269 37.037 0.00 0.00 0.00 3.69
6 7 7.815549 CACTTTCTCTTCCTTTCTAACTACTCC 59.184 40.741 0.00 0.00 0.00 3.85
7 8 7.815549 CCACTTTCTCTTCCTTTCTAACTACTC 59.184 40.741 0.00 0.00 0.00 2.59
8 9 7.256368 CCCACTTTCTCTTCCTTTCTAACTACT 60.256 40.741 0.00 0.00 0.00 2.57
9 10 6.874664 CCCACTTTCTCTTCCTTTCTAACTAC 59.125 42.308 0.00 0.00 0.00 2.73
10 11 6.785963 TCCCACTTTCTCTTCCTTTCTAACTA 59.214 38.462 0.00 0.00 0.00 2.24
11 12 5.607171 TCCCACTTTCTCTTCCTTTCTAACT 59.393 40.000 0.00 0.00 0.00 2.24
12 13 5.866207 TCCCACTTTCTCTTCCTTTCTAAC 58.134 41.667 0.00 0.00 0.00 2.34
13 14 6.296489 GGATCCCACTTTCTCTTCCTTTCTAA 60.296 42.308 0.00 0.00 0.00 2.10
14 15 5.189934 GGATCCCACTTTCTCTTCCTTTCTA 59.810 44.000 0.00 0.00 0.00 2.10
15 16 4.018870 GGATCCCACTTTCTCTTCCTTTCT 60.019 45.833 0.00 0.00 0.00 2.52
16 17 4.263506 TGGATCCCACTTTCTCTTCCTTTC 60.264 45.833 9.90 0.00 0.00 2.62
17 18 3.657727 TGGATCCCACTTTCTCTTCCTTT 59.342 43.478 9.90 0.00 0.00 3.11
18 19 3.260205 TGGATCCCACTTTCTCTTCCTT 58.740 45.455 9.90 0.00 0.00 3.36
19 20 2.921221 TGGATCCCACTTTCTCTTCCT 58.079 47.619 9.90 0.00 0.00 3.36
20 21 3.941704 ATGGATCCCACTTTCTCTTCC 57.058 47.619 9.90 0.00 35.80 3.46
21 22 5.878406 TCTATGGATCCCACTTTCTCTTC 57.122 43.478 9.90 0.00 35.80 2.87
22 23 6.445139 TCTTTCTATGGATCCCACTTTCTCTT 59.555 38.462 9.90 0.00 35.80 2.85
23 24 5.966935 TCTTTCTATGGATCCCACTTTCTCT 59.033 40.000 9.90 0.00 35.80 3.10
24 25 6.098982 TCTCTTTCTATGGATCCCACTTTCTC 59.901 42.308 9.90 0.00 35.80 2.87
25 26 5.966935 TCTCTTTCTATGGATCCCACTTTCT 59.033 40.000 9.90 0.00 35.80 2.52
26 27 6.240549 TCTCTTTCTATGGATCCCACTTTC 57.759 41.667 9.90 0.00 35.80 2.62
27 28 6.642733 TTCTCTTTCTATGGATCCCACTTT 57.357 37.500 9.90 0.00 35.80 2.66
28 29 6.642733 TTTCTCTTTCTATGGATCCCACTT 57.357 37.500 9.90 0.00 35.80 3.16
29 30 6.353429 CCTTTTCTCTTTCTATGGATCCCACT 60.353 42.308 9.90 0.00 35.80 4.00
30 31 5.825151 CCTTTTCTCTTTCTATGGATCCCAC 59.175 44.000 9.90 0.00 35.80 4.61
31 32 5.731187 TCCTTTTCTCTTTCTATGGATCCCA 59.269 40.000 9.90 0.00 38.19 4.37
32 33 6.253946 TCCTTTTCTCTTTCTATGGATCCC 57.746 41.667 9.90 0.00 0.00 3.85
33 34 8.100164 CCTATCCTTTTCTCTTTCTATGGATCC 58.900 40.741 4.20 4.20 35.13 3.36
34 35 8.100164 CCCTATCCTTTTCTCTTTCTATGGATC 58.900 40.741 0.00 0.00 35.13 3.36
35 36 7.475510 GCCCTATCCTTTTCTCTTTCTATGGAT 60.476 40.741 0.00 0.00 36.99 3.41
36 37 6.183361 GCCCTATCCTTTTCTCTTTCTATGGA 60.183 42.308 0.00 0.00 0.00 3.41
37 38 6.000840 GCCCTATCCTTTTCTCTTTCTATGG 58.999 44.000 0.00 0.00 0.00 2.74
38 39 6.000840 GGCCCTATCCTTTTCTCTTTCTATG 58.999 44.000 0.00 0.00 0.00 2.23
39 40 5.672194 TGGCCCTATCCTTTTCTCTTTCTAT 59.328 40.000 0.00 0.00 0.00 1.98
40 41 5.036916 TGGCCCTATCCTTTTCTCTTTCTA 58.963 41.667 0.00 0.00 0.00 2.10
41 42 3.852578 TGGCCCTATCCTTTTCTCTTTCT 59.147 43.478 0.00 0.00 0.00 2.52
42 43 4.236527 TGGCCCTATCCTTTTCTCTTTC 57.763 45.455 0.00 0.00 0.00 2.62
43 44 4.675063 TTGGCCCTATCCTTTTCTCTTT 57.325 40.909 0.00 0.00 0.00 2.52
44 45 4.888626 ATTGGCCCTATCCTTTTCTCTT 57.111 40.909 0.00 0.00 0.00 2.85
45 46 4.386873 GGAATTGGCCCTATCCTTTTCTCT 60.387 45.833 0.00 0.00 0.00 3.10
46 47 3.891977 GGAATTGGCCCTATCCTTTTCTC 59.108 47.826 0.00 0.00 0.00 2.87
47 48 3.272020 TGGAATTGGCCCTATCCTTTTCT 59.728 43.478 16.19 0.00 33.02 2.52
48 49 3.638627 CTGGAATTGGCCCTATCCTTTTC 59.361 47.826 16.19 2.21 33.02 2.29
49 50 3.012844 ACTGGAATTGGCCCTATCCTTTT 59.987 43.478 16.19 1.56 33.02 2.27
50 51 2.587307 ACTGGAATTGGCCCTATCCTTT 59.413 45.455 16.19 3.57 33.02 3.11
51 52 2.217776 ACTGGAATTGGCCCTATCCTT 58.782 47.619 16.19 3.86 33.02 3.36
52 53 1.912862 ACTGGAATTGGCCCTATCCT 58.087 50.000 16.19 0.00 33.02 3.24
53 54 2.175715 AGAACTGGAATTGGCCCTATCC 59.824 50.000 0.00 5.48 0.00 2.59
54 55 3.217626 CAGAACTGGAATTGGCCCTATC 58.782 50.000 0.00 0.00 0.00 2.08
79 80 5.733620 ACTGAGTAGTGGGTTCGAATTAA 57.266 39.130 0.00 0.00 35.34 1.40
83 84 4.124238 CAAAACTGAGTAGTGGGTTCGAA 58.876 43.478 0.00 0.00 37.19 3.71
112 113 6.096282 GGGCAAAACTGAGCATACCTAAAATA 59.904 38.462 0.00 0.00 0.00 1.40
113 114 5.105351 GGGCAAAACTGAGCATACCTAAAAT 60.105 40.000 0.00 0.00 0.00 1.82
142 143 8.964772 AGTATTTCTATAAGTGACACTAACGGT 58.035 33.333 8.91 0.00 0.00 4.83
166 167 4.449068 CAGACAGTAACGATGCAAAAGAGT 59.551 41.667 0.00 0.00 0.00 3.24
168 169 3.745975 CCAGACAGTAACGATGCAAAAGA 59.254 43.478 0.00 0.00 0.00 2.52
176 177 3.576982 TCCTTTGACCAGACAGTAACGAT 59.423 43.478 0.00 0.00 0.00 3.73
238 241 4.830046 TCTTCGATCCCACAAAATTTTGGA 59.170 37.500 29.37 19.83 42.34 3.53
239 242 5.132897 TCTTCGATCCCACAAAATTTTGG 57.867 39.130 29.37 19.49 42.34 3.28
241 244 7.393234 TGACTATCTTCGATCCCACAAAATTTT 59.607 33.333 0.00 0.00 0.00 1.82
292 296 2.589442 GGTGTCCGAACGGCACAA 60.589 61.111 27.16 5.91 41.05 3.33
406 410 3.451178 GCACCTAAGTATCTTCAGTCCCA 59.549 47.826 0.00 0.00 0.00 4.37
448 466 2.273370 TCGGACAACTCTTACGATGC 57.727 50.000 0.00 0.00 0.00 3.91
456 484 0.396435 TGTGCCATTCGGACAACTCT 59.604 50.000 0.00 0.00 0.00 3.24
460 488 3.742433 ATTTTTGTGCCATTCGGACAA 57.258 38.095 0.00 0.00 33.33 3.18
469 699 0.654683 GCGTGCAAATTTTTGTGCCA 59.345 45.000 5.05 0.00 40.14 4.92
476 706 1.830368 GCAAGGCGCGTGCAAATTTT 61.830 50.000 24.79 5.73 45.35 1.82
585 816 1.801309 GCCCTTTTGCGCTGTTACCA 61.801 55.000 9.73 0.00 0.00 3.25
592 823 1.544724 TAGAAATGCCCTTTTGCGCT 58.455 45.000 9.73 0.00 0.00 5.92
716 947 6.911250 ACTCGGGTTATCATTTTCCTTTTT 57.089 33.333 0.00 0.00 0.00 1.94
717 948 6.911250 AACTCGGGTTATCATTTTCCTTTT 57.089 33.333 0.00 0.00 33.39 2.27
718 949 6.095021 GCTAACTCGGGTTATCATTTTCCTTT 59.905 38.462 8.65 0.00 37.30 3.11
719 950 5.589050 GCTAACTCGGGTTATCATTTTCCTT 59.411 40.000 8.65 0.00 37.30 3.36
720 951 5.123936 GCTAACTCGGGTTATCATTTTCCT 58.876 41.667 8.65 0.00 37.30 3.36
721 952 4.879545 TGCTAACTCGGGTTATCATTTTCC 59.120 41.667 8.65 0.00 37.30 3.13
722 953 5.353123 TGTGCTAACTCGGGTTATCATTTTC 59.647 40.000 14.33 3.23 36.73 2.29
723 954 5.250200 TGTGCTAACTCGGGTTATCATTTT 58.750 37.500 14.33 0.00 36.73 1.82
724 955 4.839121 TGTGCTAACTCGGGTTATCATTT 58.161 39.130 14.33 0.00 36.73 2.32
725 956 4.081087 ACTGTGCTAACTCGGGTTATCATT 60.081 41.667 14.33 4.20 36.73 2.57
726 957 3.451178 ACTGTGCTAACTCGGGTTATCAT 59.549 43.478 14.33 0.00 36.73 2.45
727 958 2.829720 ACTGTGCTAACTCGGGTTATCA 59.170 45.455 8.65 8.09 37.30 2.15
728 959 3.445857 GACTGTGCTAACTCGGGTTATC 58.554 50.000 8.65 5.09 37.30 1.75
729 960 2.167900 GGACTGTGCTAACTCGGGTTAT 59.832 50.000 8.65 0.00 37.30 1.89
730 961 1.547372 GGACTGTGCTAACTCGGGTTA 59.453 52.381 7.83 7.83 36.92 2.85
731 962 0.320697 GGACTGTGCTAACTCGGGTT 59.679 55.000 5.71 5.71 39.26 4.11
732 963 0.542232 AGGACTGTGCTAACTCGGGT 60.542 55.000 0.00 0.00 0.00 5.28
733 964 1.471119 TAGGACTGTGCTAACTCGGG 58.529 55.000 6.57 0.00 0.00 5.14
734 965 3.587797 TTTAGGACTGTGCTAACTCGG 57.412 47.619 19.50 0.00 29.87 4.63
735 966 7.591006 TTAATTTTAGGACTGTGCTAACTCG 57.409 36.000 19.50 0.00 29.87 4.18
736 967 9.827411 CTTTTAATTTTAGGACTGTGCTAACTC 57.173 33.333 19.50 0.00 29.87 3.01
737 968 9.350951 ACTTTTAATTTTAGGACTGTGCTAACT 57.649 29.630 19.50 10.76 29.87 2.24
738 969 9.394477 CACTTTTAATTTTAGGACTGTGCTAAC 57.606 33.333 19.50 0.00 29.87 2.34
739 970 9.344772 TCACTTTTAATTTTAGGACTGTGCTAA 57.655 29.630 16.46 16.46 0.00 3.09
740 971 8.911918 TCACTTTTAATTTTAGGACTGTGCTA 57.088 30.769 4.81 4.81 0.00 3.49
741 972 7.817418 TCACTTTTAATTTTAGGACTGTGCT 57.183 32.000 7.10 7.10 0.00 4.40
772 1003 8.184848 CCTCTTTTCTCTTTCGTTTCTTCTTTT 58.815 33.333 0.00 0.00 0.00 2.27
776 1007 6.846325 TCCTCTTTTCTCTTTCGTTTCTTC 57.154 37.500 0.00 0.00 0.00 2.87
777 1008 7.625828 TTTCCTCTTTTCTCTTTCGTTTCTT 57.374 32.000 0.00 0.00 0.00 2.52
911 1144 2.113562 GTGGGCCGTGTTGGGTTA 59.886 61.111 0.00 0.00 38.63 2.85
1101 1334 4.299547 AGCTGAACACGGCGAGCA 62.300 61.111 16.62 4.69 40.43 4.26
1104 1337 4.717629 CCGAGCTGAACACGGCGA 62.718 66.667 16.62 0.00 45.62 5.54
1264 1497 2.544698 GGCGCGAGATCGAGTACCT 61.545 63.158 12.10 0.00 43.02 3.08
1415 1648 2.932614 GCGCTAATAGGTCATAGCATGG 59.067 50.000 0.00 0.00 43.71 3.66
1474 1707 1.613317 CCCTCCGATACTGCACACCA 61.613 60.000 0.00 0.00 0.00 4.17
1568 1801 5.276461 TGTGAATGAGTACGCAGGATAAT 57.724 39.130 5.33 0.00 0.00 1.28
1681 1914 4.748701 ACTAGGTCAGGACTTAGGAACAA 58.251 43.478 18.92 0.00 42.99 2.83
1732 1965 6.427853 ACAAATTCTTTCTGCAAAATTAGCCC 59.572 34.615 0.00 0.00 0.00 5.19
1780 2013 1.880027 CACCACCTCAAGCCTGTAAAC 59.120 52.381 0.00 0.00 0.00 2.01
1794 2027 2.549754 CAACAATCAGTCAGACACCACC 59.450 50.000 2.66 0.00 0.00 4.61
1900 2133 8.755028 TCATGCTATGGTTAACTTAGTGTTAGA 58.245 33.333 5.42 1.91 41.55 2.10
1948 2181 3.565902 GGCTATTTCACACTAGCATTCCC 59.434 47.826 4.20 0.00 41.71 3.97
1952 2185 4.494091 AGTGGCTATTTCACACTAGCAT 57.506 40.909 0.00 0.00 43.13 3.79
1956 2189 6.109156 TCTTCAAGTGGCTATTTCACACTA 57.891 37.500 0.00 0.00 44.08 2.74
2039 2659 4.717233 TTGTGAATGCATGGGTGATAAC 57.283 40.909 0.00 0.00 0.00 1.89
2095 2715 7.872113 TGGGTAAATTTTGCAAAGATTGTTT 57.128 28.000 12.41 11.43 0.00 2.83
2104 2724 6.603997 ACTCCGTATATGGGTAAATTTTGCAA 59.396 34.615 11.19 0.00 0.00 4.08
2151 2771 1.166531 GGCACAACCGAGACAGCTTT 61.167 55.000 0.00 0.00 0.00 3.51
2152 2772 1.598130 GGCACAACCGAGACAGCTT 60.598 57.895 0.00 0.00 0.00 3.74
2217 2837 3.806949 TTTGGGTATGAGAAGGTGCTT 57.193 42.857 0.00 0.00 0.00 3.91
2479 3099 2.034878 CATAGGGACTGCTGCAGACTA 58.965 52.381 34.28 27.99 41.52 2.59
2691 3416 3.325870 TGCATCTTGGTTGAACTACTCG 58.674 45.455 0.00 0.00 0.00 4.18
3073 3805 0.944386 AACAGCGCGTTCATCACTTT 59.056 45.000 8.43 0.00 29.27 2.66
3123 3856 1.584724 GTCTTCCCATTCCCTCTCCA 58.415 55.000 0.00 0.00 0.00 3.86
3136 3869 1.374758 CCTGAGCACACGGTCTTCC 60.375 63.158 0.00 0.00 40.44 3.46
3172 3905 2.346099 ACACAACCGCATATGCAAAC 57.654 45.000 26.52 0.00 42.21 2.93
3177 3910 2.892373 AACGAACACAACCGCATATG 57.108 45.000 0.00 0.00 0.00 1.78
3186 3919 3.336468 ACAACACACCTAACGAACACAA 58.664 40.909 0.00 0.00 0.00 3.33
3405 4146 0.615331 GGACTCAGCTGAACCCATCA 59.385 55.000 18.85 0.00 36.38 3.07
3428 4169 5.003096 AGGGTTTCATTCACTTCCAAGAT 57.997 39.130 0.00 0.00 0.00 2.40
3488 4239 4.241555 AGCCCATCGCGGACATCC 62.242 66.667 6.13 0.00 44.76 3.51
3561 4312 2.028294 CCCCGATCCATTCTCAGATGAG 60.028 54.545 3.33 3.33 43.36 2.90
3579 4330 3.391665 CTGTGGCTGACGATCCCCC 62.392 68.421 0.00 0.00 0.00 5.40
3580 4331 2.187946 CTGTGGCTGACGATCCCC 59.812 66.667 0.00 0.00 0.00 4.81
3597 4348 5.335976 GGTCATTTCACATCTTCAGAAACCC 60.336 44.000 0.00 0.00 34.47 4.11
3715 4466 0.386478 GTACGTCGCGTCCAACTTCT 60.386 55.000 5.77 0.00 41.54 2.85
3825 4576 0.673956 CATCTGTGCTGCTGCTGTCT 60.674 55.000 17.00 0.00 40.48 3.41
3839 4590 1.681025 CGCGTGCTGACTGTCATCTG 61.681 60.000 11.45 5.64 0.00 2.90
3840 4591 1.445066 CGCGTGCTGACTGTCATCT 60.445 57.895 11.45 0.00 0.00 2.90
3841 4592 1.444383 TCGCGTGCTGACTGTCATC 60.444 57.895 11.45 7.87 0.00 2.92
3843 4594 2.354656 GTCGCGTGCTGACTGTCA 60.355 61.111 10.50 10.50 33.54 3.58
3845 4596 2.049985 GAGTCGCGTGCTGACTGT 60.050 61.111 18.90 2.52 46.29 3.55
3846 4597 3.168604 CGAGTCGCGTGCTGACTG 61.169 66.667 18.90 10.64 46.29 3.51
3861 4612 4.059511 TGTTTCTTCCTCGCAATAAACGA 58.940 39.130 0.00 0.00 38.02 3.85
3862 4613 4.394795 CTGTTTCTTCCTCGCAATAAACG 58.605 43.478 0.00 0.00 29.28 3.60
3863 4614 4.083271 AGCTGTTTCTTCCTCGCAATAAAC 60.083 41.667 0.00 0.00 0.00 2.01
3864 4615 4.072131 AGCTGTTTCTTCCTCGCAATAAA 58.928 39.130 0.00 0.00 0.00 1.40
3866 4617 3.002791 CAGCTGTTTCTTCCTCGCAATA 58.997 45.455 5.25 0.00 0.00 1.90
3889 4644 2.180159 AACAAGTATCCGCCGCCACT 62.180 55.000 0.00 0.00 0.00 4.00
4030 4785 1.334960 CGTGAGCACCAACAAACCATC 60.335 52.381 0.00 0.00 0.00 3.51
4031 4786 0.667993 CGTGAGCACCAACAAACCAT 59.332 50.000 0.00 0.00 0.00 3.55
4032 4787 2.102554 CGTGAGCACCAACAAACCA 58.897 52.632 0.00 0.00 0.00 3.67
4047 4802 0.249447 TTCAGTCTCCACACAGCGTG 60.249 55.000 7.07 7.07 45.92 5.34
4048 4803 0.464036 TTTCAGTCTCCACACAGCGT 59.536 50.000 0.00 0.00 0.00 5.07
4049 4804 1.581934 TTTTCAGTCTCCACACAGCG 58.418 50.000 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.