Multiple sequence alignment - TraesCS1B01G226100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G226100 chr1B 100.000 3959 0 0 1 3959 406034744 406038702 0.000000e+00 7312.0
1 TraesCS1B01G226100 chr1B 92.339 496 24 3 20 514 624672355 624672837 0.000000e+00 693.0
2 TraesCS1B01G226100 chr1B 84.706 340 43 4 2495 2834 405905528 405905198 8.200000e-87 331.0
3 TraesCS1B01G226100 chr1B 79.942 344 58 6 2498 2840 405525353 405525020 3.950000e-60 243.0
4 TraesCS1B01G226100 chr1B 82.979 188 30 2 1753 1939 405905985 405905799 6.800000e-38 169.0
5 TraesCS1B01G226100 chr1B 87.931 58 7 0 1225 1282 405673617 405673560 7.100000e-08 69.4
6 TraesCS1B01G226100 chr1D 90.688 2792 101 61 531 3264 300857882 300860572 0.000000e+00 3568.0
7 TraesCS1B01G226100 chr1D 89.507 629 38 12 3328 3947 300860678 300861287 0.000000e+00 771.0
8 TraesCS1B01G226100 chr1D 85.882 340 39 4 2495 2834 300718368 300718038 1.750000e-93 353.0
9 TraesCS1B01G226100 chr1D 80.952 336 55 4 2498 2833 300326114 300325788 1.410000e-64 257.0
10 TraesCS1B01G226100 chr1D 94.595 148 8 0 367 514 478866396 478866543 3.080000e-56 230.0
11 TraesCS1B01G226100 chr1D 83.069 189 29 3 1753 1939 300718826 300718639 6.800000e-38 169.0
12 TraesCS1B01G226100 chr1A 91.450 1462 60 31 946 2359 375467480 375468924 0.000000e+00 1947.0
13 TraesCS1B01G226100 chr1A 87.907 1505 61 47 2486 3947 375468967 375470393 0.000000e+00 1659.0
14 TraesCS1B01G226100 chr1A 93.187 411 21 4 531 938 375466799 375467205 7.320000e-167 597.0
15 TraesCS1B01G226100 chr1A 85.294 340 41 4 2495 2834 375112664 375112334 3.790000e-90 342.0
16 TraesCS1B01G226100 chr1A 80.178 338 58 4 2499 2836 374689986 374689658 1.100000e-60 244.0
17 TraesCS1B01G226100 chr1A 83.511 188 29 2 1753 1939 375113130 375112944 1.460000e-39 174.0
18 TraesCS1B01G226100 chr1A 88.136 59 6 1 1224 1282 374959678 374959621 7.100000e-08 69.4
19 TraesCS1B01G226100 chr7D 91.436 362 23 2 154 514 131273563 131273917 1.280000e-134 490.0
20 TraesCS1B01G226100 chr7D 91.724 145 11 1 1 145 131273275 131273418 2.410000e-47 200.0
21 TraesCS1B01G226100 chr4A 89.751 361 30 2 154 514 596970183 596970536 4.660000e-124 455.0
22 TraesCS1B01G226100 chr4A 87.097 155 10 3 1 145 596969886 596970040 2.450000e-37 167.0
23 TraesCS1B01G226100 chr4B 88.563 341 34 3 2495 2831 659329679 659329340 3.680000e-110 409.0
24 TraesCS1B01G226100 chr4B 84.865 185 28 0 1756 1940 659330285 659330101 1.880000e-43 187.0
25 TraesCS1B01G226100 chr5A 88.047 343 35 4 2495 2831 694760251 694760593 6.160000e-108 401.0
26 TraesCS1B01G226100 chr5A 84.375 192 30 0 1756 1947 694759648 694759839 5.220000e-44 189.0
27 TraesCS1B01G226100 chr5A 83.051 118 19 1 1383 1500 85165127 85165011 5.410000e-19 106.0
28 TraesCS1B01G226100 chr5A 95.833 48 2 0 3518 3565 37403665 37403712 1.180000e-10 78.7
29 TraesCS1B01G226100 chr4D 86.981 361 34 8 2494 2842 508501904 508502263 1.030000e-105 394.0
30 TraesCS1B01G226100 chr3A 83.893 298 27 4 217 514 475711477 475711753 8.440000e-67 265.0
31 TraesCS1B01G226100 chr7A 82.550 298 29 7 217 514 238604588 238604314 1.420000e-59 241.0
32 TraesCS1B01G226100 chr7A 91.892 148 11 1 367 514 663767479 663767625 5.190000e-49 206.0
33 TraesCS1B01G226100 chr7A 93.750 112 7 0 403 514 31323687 31323798 6.800000e-38 169.0
34 TraesCS1B01G226100 chr5B 76.901 342 70 6 2493 2825 96764636 96764295 6.760000e-43 185.0
35 TraesCS1B01G226100 chr5B 83.051 118 19 1 1383 1500 96765397 96765281 5.410000e-19 106.0
36 TraesCS1B01G226100 chr6A 85.333 150 20 2 1783 1931 399722496 399722644 1.910000e-33 154.0
37 TraesCS1B01G226100 chr6A 90.090 111 11 0 404 514 53265471 53265361 1.150000e-30 145.0
38 TraesCS1B01G226100 chr6B 86.014 143 18 2 1798 1939 438386394 438386253 6.850000e-33 152.0
39 TraesCS1B01G226100 chr5D 82.203 118 20 1 1383 1500 91406618 91406502 2.520000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G226100 chr1B 406034744 406038702 3958 False 7312.0 7312 100.0000 1 3959 1 chr1B.!!$F1 3958
1 TraesCS1B01G226100 chr1B 405905198 405905985 787 True 250.0 331 83.8425 1753 2834 2 chr1B.!!$R3 1081
2 TraesCS1B01G226100 chr1D 300857882 300861287 3405 False 2169.5 3568 90.0975 531 3947 2 chr1D.!!$F2 3416
3 TraesCS1B01G226100 chr1D 300718038 300718826 788 True 261.0 353 84.4755 1753 2834 2 chr1D.!!$R2 1081
4 TraesCS1B01G226100 chr1A 375466799 375470393 3594 False 1401.0 1947 90.8480 531 3947 3 chr1A.!!$F1 3416
5 TraesCS1B01G226100 chr1A 375112334 375113130 796 True 258.0 342 84.4025 1753 2834 2 chr1A.!!$R3 1081
6 TraesCS1B01G226100 chr7D 131273275 131273917 642 False 345.0 490 91.5800 1 514 2 chr7D.!!$F1 513
7 TraesCS1B01G226100 chr4A 596969886 596970536 650 False 311.0 455 88.4240 1 514 2 chr4A.!!$F1 513
8 TraesCS1B01G226100 chr4B 659329340 659330285 945 True 298.0 409 86.7140 1756 2831 2 chr4B.!!$R1 1075
9 TraesCS1B01G226100 chr5A 694759648 694760593 945 False 295.0 401 86.2110 1756 2831 2 chr5A.!!$F2 1075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 302 0.036105 TGCGATGACCTGAGCAACAT 60.036 50.0 0.00 0.0 36.60 2.71 F
476 488 0.107361 CTTAGGGGGTAAACAGGCCG 60.107 60.0 0.00 0.0 0.00 6.13 F
490 502 0.112412 AGGCCGGTTTGTGAAATCCT 59.888 50.0 1.90 0.0 0.00 3.24 F
691 703 0.318699 CTCGAGTCCTGTTGCGTTCA 60.319 55.0 3.62 0.0 0.00 3.18 F
742 756 0.325671 TGAGAGGGGCCTGACCTAAG 60.326 60.0 0.84 0.0 38.79 2.18 F
1649 1958 0.384353 GTTGTTCAGTCGCTTTCCGC 60.384 55.0 0.00 0.0 36.73 5.54 F
2474 3155 0.616371 TGGTGGCTAAATACGGTGCT 59.384 50.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1939 0.384353 GCGGAAAGCGACTGAACAAC 60.384 55.000 0.00 0.0 35.41 3.32 R
2456 3137 1.296727 GAGCACCGTATTTAGCCACC 58.703 55.000 0.00 0.0 0.00 4.61 R
2476 3157 0.316937 CAATCCACACACACGCACAC 60.317 55.000 0.00 0.0 0.00 3.82 R
2482 3163 0.823356 ACCCTGCAATCCACACACAC 60.823 55.000 0.00 0.0 0.00 3.82 R
2553 3246 1.802636 CGCGAAGTAGACGGGGTTA 59.197 57.895 0.00 0.0 39.38 2.85 R
2931 3662 0.041312 ACTCAACGCAACGCAATGAC 60.041 50.000 0.00 0.0 0.00 3.06 R
3699 4512 0.034059 CTGTTCTGCTTGACCGGAGT 59.966 55.000 9.46 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 61 2.970639 GTGTGCCAGCTCGGTAGA 59.029 61.111 4.45 0.00 36.97 2.59
72 81 4.539083 ACGGCGCAGTGTTGTCCA 62.539 61.111 13.72 0.00 0.00 4.02
73 82 3.276091 CGGCGCAGTGTTGTCCAA 61.276 61.111 10.83 0.00 0.00 3.53
75 84 2.639286 GCGCAGTGTTGTCCAAGG 59.361 61.111 0.30 0.00 0.00 3.61
76 85 2.186826 GCGCAGTGTTGTCCAAGGT 61.187 57.895 0.30 0.00 0.00 3.50
77 86 1.648720 CGCAGTGTTGTCCAAGGTG 59.351 57.895 0.00 0.00 0.00 4.00
78 87 1.785041 CGCAGTGTTGTCCAAGGTGG 61.785 60.000 0.00 0.00 39.43 4.61
127 139 2.711924 CGAGGCGACTACGGTACC 59.288 66.667 0.16 0.16 44.43 3.34
145 157 1.488957 CACAGCGCACGAGAAACTC 59.511 57.895 11.47 0.00 0.00 3.01
155 167 3.196613 GAGAAACTCGGTCGCAAGT 57.803 52.632 0.00 0.00 39.48 3.16
156 168 1.061485 GAGAAACTCGGTCGCAAGTC 58.939 55.000 0.00 0.00 39.48 3.01
157 169 0.663568 AGAAACTCGGTCGCAAGTCG 60.664 55.000 0.00 0.00 40.15 4.18
158 170 0.662374 GAAACTCGGTCGCAAGTCGA 60.662 55.000 0.00 0.00 46.29 4.20
165 177 3.676605 TCGCAAGTCGAAGGCCGA 61.677 61.111 0.00 0.00 45.36 5.54
172 184 4.932789 TCGAAGGCCGATCAAAGG 57.067 55.556 11.47 0.00 43.23 3.11
179 191 2.393557 GCCGATCAAAGGCGATTGA 58.606 52.632 10.45 10.45 45.58 2.57
186 198 2.789213 TCAAAGGCGATTGATGAACCA 58.211 42.857 4.91 0.00 34.50 3.67
187 199 2.487762 TCAAAGGCGATTGATGAACCAC 59.512 45.455 4.91 0.00 34.50 4.16
188 200 2.198827 AAGGCGATTGATGAACCACA 57.801 45.000 0.00 0.00 0.00 4.17
189 201 1.742761 AGGCGATTGATGAACCACAG 58.257 50.000 0.00 0.00 0.00 3.66
190 202 1.278985 AGGCGATTGATGAACCACAGA 59.721 47.619 0.00 0.00 0.00 3.41
191 203 1.398390 GGCGATTGATGAACCACAGAC 59.602 52.381 0.00 0.00 0.00 3.51
192 204 2.350522 GCGATTGATGAACCACAGACT 58.649 47.619 0.00 0.00 0.00 3.24
193 205 2.094894 GCGATTGATGAACCACAGACTG 59.905 50.000 0.00 0.00 0.00 3.51
194 206 3.588955 CGATTGATGAACCACAGACTGA 58.411 45.455 10.08 0.00 0.00 3.41
195 207 3.615937 CGATTGATGAACCACAGACTGAG 59.384 47.826 10.08 0.23 0.00 3.35
196 208 2.462456 TGATGAACCACAGACTGAGC 57.538 50.000 10.08 0.00 0.00 4.26
197 209 1.973515 TGATGAACCACAGACTGAGCT 59.026 47.619 10.08 0.00 0.00 4.09
198 210 2.369860 TGATGAACCACAGACTGAGCTT 59.630 45.455 10.08 0.00 0.00 3.74
199 211 2.533266 TGAACCACAGACTGAGCTTC 57.467 50.000 10.08 5.27 0.00 3.86
200 212 1.070758 TGAACCACAGACTGAGCTTCC 59.929 52.381 10.08 0.00 0.00 3.46
201 213 1.346068 GAACCACAGACTGAGCTTCCT 59.654 52.381 10.08 0.00 0.00 3.36
202 214 0.972883 ACCACAGACTGAGCTTCCTC 59.027 55.000 10.08 0.00 38.62 3.71
203 215 0.108898 CCACAGACTGAGCTTCCTCG 60.109 60.000 10.08 0.00 41.13 4.63
204 216 0.600557 CACAGACTGAGCTTCCTCGT 59.399 55.000 10.08 0.00 41.13 4.18
205 217 0.600557 ACAGACTGAGCTTCCTCGTG 59.399 55.000 10.08 0.00 41.13 4.35
206 218 0.108898 CAGACTGAGCTTCCTCGTGG 60.109 60.000 0.00 0.00 41.13 4.94
207 219 1.446966 GACTGAGCTTCCTCGTGGC 60.447 63.158 0.00 0.00 41.13 5.01
208 220 2.125350 CTGAGCTTCCTCGTGGCC 60.125 66.667 0.00 0.00 41.13 5.36
209 221 3.997064 CTGAGCTTCCTCGTGGCCG 62.997 68.421 0.00 0.00 41.13 6.13
210 222 4.821589 GAGCTTCCTCGTGGCCGG 62.822 72.222 0.00 0.00 33.95 6.13
241 253 3.130160 GCTGGTGCTGCAGCCTAC 61.130 66.667 34.64 26.02 41.18 3.18
242 254 2.437359 CTGGTGCTGCAGCCTACC 60.437 66.667 31.53 31.53 41.18 3.18
243 255 3.248418 TGGTGCTGCAGCCTACCA 61.248 61.111 35.05 35.05 42.52 3.25
244 256 2.437359 GGTGCTGCAGCCTACCAG 60.437 66.667 32.59 2.29 41.18 4.00
245 257 2.348998 GTGCTGCAGCCTACCAGT 59.651 61.111 34.64 0.00 41.18 4.00
246 258 1.596934 GTGCTGCAGCCTACCAGTA 59.403 57.895 34.64 11.80 41.18 2.74
247 259 0.741221 GTGCTGCAGCCTACCAGTAC 60.741 60.000 34.64 19.80 41.18 2.73
248 260 1.153349 GCTGCAGCCTACCAGTACC 60.153 63.158 28.76 0.00 34.31 3.34
249 261 1.617947 GCTGCAGCCTACCAGTACCT 61.618 60.000 28.76 0.00 34.31 3.08
250 262 0.461961 CTGCAGCCTACCAGTACCTC 59.538 60.000 0.00 0.00 0.00 3.85
251 263 0.252057 TGCAGCCTACCAGTACCTCA 60.252 55.000 0.00 0.00 0.00 3.86
252 264 0.902531 GCAGCCTACCAGTACCTCAA 59.097 55.000 0.00 0.00 0.00 3.02
253 265 1.486726 GCAGCCTACCAGTACCTCAAT 59.513 52.381 0.00 0.00 0.00 2.57
254 266 2.743183 GCAGCCTACCAGTACCTCAATG 60.743 54.545 0.00 0.00 0.00 2.82
255 267 2.766263 CAGCCTACCAGTACCTCAATGA 59.234 50.000 0.00 0.00 0.00 2.57
256 268 2.766828 AGCCTACCAGTACCTCAATGAC 59.233 50.000 0.00 0.00 0.00 3.06
257 269 2.481449 GCCTACCAGTACCTCAATGACG 60.481 54.545 0.00 0.00 0.00 4.35
258 270 2.481449 CCTACCAGTACCTCAATGACGC 60.481 54.545 0.00 0.00 0.00 5.19
259 271 0.973632 ACCAGTACCTCAATGACGCA 59.026 50.000 0.00 0.00 0.00 5.24
260 272 1.346395 ACCAGTACCTCAATGACGCAA 59.654 47.619 0.00 0.00 0.00 4.85
275 287 2.624169 GCAAGTAGTTTGGGTGCGA 58.376 52.632 0.00 0.00 37.26 5.10
276 288 1.165270 GCAAGTAGTTTGGGTGCGAT 58.835 50.000 0.00 0.00 37.26 4.58
277 289 1.135689 GCAAGTAGTTTGGGTGCGATG 60.136 52.381 0.00 0.00 37.26 3.84
278 290 2.422597 CAAGTAGTTTGGGTGCGATGA 58.577 47.619 0.00 0.00 32.95 2.92
279 291 2.094762 AGTAGTTTGGGTGCGATGAC 57.905 50.000 0.00 0.00 0.00 3.06
280 292 1.084289 GTAGTTTGGGTGCGATGACC 58.916 55.000 0.00 0.00 34.96 4.02
281 293 0.981183 TAGTTTGGGTGCGATGACCT 59.019 50.000 0.00 0.00 36.14 3.85
282 294 0.606401 AGTTTGGGTGCGATGACCTG 60.606 55.000 0.00 0.00 36.14 4.00
283 295 0.605319 GTTTGGGTGCGATGACCTGA 60.605 55.000 0.00 0.00 36.14 3.86
284 296 0.321564 TTTGGGTGCGATGACCTGAG 60.322 55.000 0.00 0.00 36.14 3.35
285 297 2.512515 GGGTGCGATGACCTGAGC 60.513 66.667 0.00 0.00 36.14 4.26
286 298 2.265739 GGTGCGATGACCTGAGCA 59.734 61.111 0.00 0.00 37.26 4.26
287 299 1.375908 GGTGCGATGACCTGAGCAA 60.376 57.895 0.00 0.00 41.56 3.91
288 300 1.639298 GGTGCGATGACCTGAGCAAC 61.639 60.000 0.00 0.00 41.56 4.17
289 301 0.950555 GTGCGATGACCTGAGCAACA 60.951 55.000 0.00 0.00 41.56 3.33
290 302 0.036105 TGCGATGACCTGAGCAACAT 60.036 50.000 0.00 0.00 36.60 2.71
291 303 0.376152 GCGATGACCTGAGCAACATG 59.624 55.000 0.00 0.00 0.00 3.21
292 304 0.376152 CGATGACCTGAGCAACATGC 59.624 55.000 0.00 0.00 45.46 4.06
301 313 4.223800 GCAACATGCGATGGGAGA 57.776 55.556 0.00 0.00 31.71 3.71
302 314 2.481212 GCAACATGCGATGGGAGAA 58.519 52.632 0.00 0.00 31.71 2.87
303 315 0.810648 GCAACATGCGATGGGAGAAA 59.189 50.000 0.00 0.00 31.71 2.52
304 316 1.202222 GCAACATGCGATGGGAGAAAG 60.202 52.381 0.00 0.00 31.71 2.62
305 317 1.098050 AACATGCGATGGGAGAAAGC 58.902 50.000 0.00 0.00 33.60 3.51
306 318 0.254178 ACATGCGATGGGAGAAAGCT 59.746 50.000 0.00 0.00 33.60 3.74
307 319 0.661552 CATGCGATGGGAGAAAGCTG 59.338 55.000 0.00 0.00 0.00 4.24
308 320 0.465097 ATGCGATGGGAGAAAGCTGG 60.465 55.000 0.00 0.00 0.00 4.85
309 321 1.821332 GCGATGGGAGAAAGCTGGG 60.821 63.158 0.00 0.00 0.00 4.45
310 322 1.153086 CGATGGGAGAAAGCTGGGG 60.153 63.158 0.00 0.00 0.00 4.96
311 323 1.228510 GATGGGAGAAAGCTGGGGG 59.771 63.158 0.00 0.00 0.00 5.40
312 324 1.230281 ATGGGAGAAAGCTGGGGGA 60.230 57.895 0.00 0.00 0.00 4.81
313 325 0.850883 ATGGGAGAAAGCTGGGGGAA 60.851 55.000 0.00 0.00 0.00 3.97
314 326 1.304617 GGGAGAAAGCTGGGGGAAG 59.695 63.158 0.00 0.00 0.00 3.46
315 327 1.304617 GGAGAAAGCTGGGGGAAGG 59.695 63.158 0.00 0.00 0.00 3.46
316 328 1.208165 GGAGAAAGCTGGGGGAAGGA 61.208 60.000 0.00 0.00 0.00 3.36
317 329 0.698818 GAGAAAGCTGGGGGAAGGAA 59.301 55.000 0.00 0.00 0.00 3.36
318 330 0.405973 AGAAAGCTGGGGGAAGGAAC 59.594 55.000 0.00 0.00 0.00 3.62
320 332 0.113190 AAAGCTGGGGGAAGGAACTG 59.887 55.000 0.00 0.00 40.86 3.16
321 333 1.068352 AAGCTGGGGGAAGGAACTGT 61.068 55.000 0.00 0.00 40.86 3.55
322 334 0.178873 AGCTGGGGGAAGGAACTGTA 60.179 55.000 0.00 0.00 40.86 2.74
323 335 0.919710 GCTGGGGGAAGGAACTGTAT 59.080 55.000 0.00 0.00 40.86 2.29
324 336 1.285078 GCTGGGGGAAGGAACTGTATT 59.715 52.381 0.00 0.00 40.86 1.89
325 337 2.684038 GCTGGGGGAAGGAACTGTATTC 60.684 54.545 0.00 0.00 40.86 1.75
326 338 2.576191 CTGGGGGAAGGAACTGTATTCA 59.424 50.000 3.69 0.00 40.86 2.57
327 339 2.307686 TGGGGGAAGGAACTGTATTCAC 59.692 50.000 3.69 0.16 40.86 3.18
328 340 2.629051 GGGGAAGGAACTGTATTCACG 58.371 52.381 3.69 0.00 40.86 4.35
329 341 2.235402 GGGGAAGGAACTGTATTCACGA 59.765 50.000 0.00 0.00 40.86 4.35
330 342 3.522553 GGGAAGGAACTGTATTCACGAG 58.477 50.000 0.00 0.00 40.86 4.18
331 343 3.194968 GGGAAGGAACTGTATTCACGAGA 59.805 47.826 0.00 0.00 40.86 4.04
332 344 4.174762 GGAAGGAACTGTATTCACGAGAC 58.825 47.826 0.00 0.00 40.86 3.36
333 345 3.489180 AGGAACTGTATTCACGAGACG 57.511 47.619 0.00 0.00 37.18 4.18
334 346 3.079578 AGGAACTGTATTCACGAGACGA 58.920 45.455 0.00 0.00 37.18 4.20
335 347 3.119919 AGGAACTGTATTCACGAGACGAC 60.120 47.826 0.00 0.00 37.18 4.34
336 348 3.119919 GGAACTGTATTCACGAGACGACT 60.120 47.826 0.00 0.00 0.00 4.18
337 349 4.093998 GGAACTGTATTCACGAGACGACTA 59.906 45.833 0.00 0.00 0.00 2.59
338 350 4.596801 ACTGTATTCACGAGACGACTAC 57.403 45.455 0.00 0.00 0.00 2.73
339 351 3.373439 ACTGTATTCACGAGACGACTACC 59.627 47.826 0.00 0.00 0.00 3.18
340 352 3.603532 TGTATTCACGAGACGACTACCT 58.396 45.455 0.00 0.00 0.00 3.08
341 353 3.620374 TGTATTCACGAGACGACTACCTC 59.380 47.826 0.00 0.00 0.00 3.85
349 361 3.207354 CGACTACCTCGCACCCAT 58.793 61.111 0.00 0.00 35.06 4.00
350 362 2.411535 CGACTACCTCGCACCCATA 58.588 57.895 0.00 0.00 35.06 2.74
351 363 0.742505 CGACTACCTCGCACCCATAA 59.257 55.000 0.00 0.00 35.06 1.90
352 364 1.535437 CGACTACCTCGCACCCATAAC 60.535 57.143 0.00 0.00 35.06 1.89
353 365 0.828677 ACTACCTCGCACCCATAACC 59.171 55.000 0.00 0.00 0.00 2.85
354 366 1.120530 CTACCTCGCACCCATAACCT 58.879 55.000 0.00 0.00 0.00 3.50
355 367 1.485066 CTACCTCGCACCCATAACCTT 59.515 52.381 0.00 0.00 0.00 3.50
356 368 0.696501 ACCTCGCACCCATAACCTTT 59.303 50.000 0.00 0.00 0.00 3.11
357 369 1.339727 ACCTCGCACCCATAACCTTTC 60.340 52.381 0.00 0.00 0.00 2.62
358 370 1.379527 CTCGCACCCATAACCTTTCC 58.620 55.000 0.00 0.00 0.00 3.13
359 371 0.693622 TCGCACCCATAACCTTTCCA 59.306 50.000 0.00 0.00 0.00 3.53
360 372 0.808755 CGCACCCATAACCTTTCCAC 59.191 55.000 0.00 0.00 0.00 4.02
361 373 0.808755 GCACCCATAACCTTTCCACG 59.191 55.000 0.00 0.00 0.00 4.94
362 374 1.884928 GCACCCATAACCTTTCCACGT 60.885 52.381 0.00 0.00 0.00 4.49
363 375 2.081462 CACCCATAACCTTTCCACGTC 58.919 52.381 0.00 0.00 0.00 4.34
364 376 1.700739 ACCCATAACCTTTCCACGTCA 59.299 47.619 0.00 0.00 0.00 4.35
365 377 2.081462 CCCATAACCTTTCCACGTCAC 58.919 52.381 0.00 0.00 0.00 3.67
366 378 2.081462 CCATAACCTTTCCACGTCACC 58.919 52.381 0.00 0.00 0.00 4.02
367 379 2.551287 CCATAACCTTTCCACGTCACCA 60.551 50.000 0.00 0.00 0.00 4.17
368 380 3.142951 CATAACCTTTCCACGTCACCAA 58.857 45.455 0.00 0.00 0.00 3.67
369 381 2.131776 AACCTTTCCACGTCACCAAA 57.868 45.000 0.00 0.00 0.00 3.28
370 382 2.131776 ACCTTTCCACGTCACCAAAA 57.868 45.000 0.00 0.00 0.00 2.44
371 383 1.746787 ACCTTTCCACGTCACCAAAAC 59.253 47.619 0.00 0.00 0.00 2.43
372 384 1.066454 CCTTTCCACGTCACCAAAACC 59.934 52.381 0.00 0.00 0.00 3.27
373 385 0.733729 TTTCCACGTCACCAAAACCG 59.266 50.000 0.00 0.00 0.00 4.44
374 386 1.716826 TTCCACGTCACCAAAACCGC 61.717 55.000 0.00 0.00 0.00 5.68
375 387 2.330041 CACGTCACCAAAACCGCC 59.670 61.111 0.00 0.00 0.00 6.13
376 388 2.184167 CACGTCACCAAAACCGCCT 61.184 57.895 0.00 0.00 0.00 5.52
377 389 2.184167 ACGTCACCAAAACCGCCTG 61.184 57.895 0.00 0.00 0.00 4.85
378 390 1.890041 CGTCACCAAAACCGCCTGA 60.890 57.895 0.00 0.00 0.00 3.86
379 391 1.440938 CGTCACCAAAACCGCCTGAA 61.441 55.000 0.00 0.00 0.00 3.02
380 392 0.741915 GTCACCAAAACCGCCTGAAA 59.258 50.000 0.00 0.00 0.00 2.69
381 393 1.135333 GTCACCAAAACCGCCTGAAAA 59.865 47.619 0.00 0.00 0.00 2.29
382 394 1.825474 TCACCAAAACCGCCTGAAAAA 59.175 42.857 0.00 0.00 0.00 1.94
383 395 1.930503 CACCAAAACCGCCTGAAAAAC 59.069 47.619 0.00 0.00 0.00 2.43
384 396 1.134640 ACCAAAACCGCCTGAAAAACC 60.135 47.619 0.00 0.00 0.00 3.27
385 397 1.134670 CCAAAACCGCCTGAAAAACCA 60.135 47.619 0.00 0.00 0.00 3.67
386 398 2.484594 CCAAAACCGCCTGAAAAACCAT 60.485 45.455 0.00 0.00 0.00 3.55
387 399 3.202097 CAAAACCGCCTGAAAAACCATT 58.798 40.909 0.00 0.00 0.00 3.16
388 400 2.812358 AACCGCCTGAAAAACCATTC 57.188 45.000 0.00 0.00 0.00 2.67
389 401 1.995376 ACCGCCTGAAAAACCATTCT 58.005 45.000 0.00 0.00 0.00 2.40
390 402 1.613437 ACCGCCTGAAAAACCATTCTG 59.387 47.619 0.00 0.00 0.00 3.02
391 403 1.885887 CCGCCTGAAAAACCATTCTGA 59.114 47.619 0.00 0.00 31.96 3.27
392 404 2.493278 CCGCCTGAAAAACCATTCTGAT 59.507 45.455 0.00 0.00 31.96 2.90
393 405 3.428045 CCGCCTGAAAAACCATTCTGATC 60.428 47.826 0.00 0.00 31.96 2.92
394 406 3.728864 CGCCTGAAAAACCATTCTGATCG 60.729 47.826 0.00 0.00 31.96 3.69
395 407 3.428045 GCCTGAAAAACCATTCTGATCGG 60.428 47.826 0.00 0.00 31.96 4.18
396 408 3.758554 CCTGAAAAACCATTCTGATCGGT 59.241 43.478 0.42 0.00 31.96 4.69
397 409 4.379813 CCTGAAAAACCATTCTGATCGGTG 60.380 45.833 0.42 0.00 31.94 4.94
398 410 3.057596 TGAAAAACCATTCTGATCGGTGC 60.058 43.478 0.42 0.00 31.94 5.01
399 411 2.496899 AAACCATTCTGATCGGTGCT 57.503 45.000 0.42 0.00 31.94 4.40
400 412 3.627395 AAACCATTCTGATCGGTGCTA 57.373 42.857 0.42 0.00 31.94 3.49
401 413 2.898729 ACCATTCTGATCGGTGCTAG 57.101 50.000 0.42 0.00 0.00 3.42
402 414 1.414181 ACCATTCTGATCGGTGCTAGG 59.586 52.381 0.42 1.15 0.00 3.02
403 415 1.270518 CCATTCTGATCGGTGCTAGGG 60.271 57.143 0.42 0.00 0.00 3.53
404 416 1.051812 ATTCTGATCGGTGCTAGGGG 58.948 55.000 0.42 0.00 0.00 4.79
405 417 1.048724 TTCTGATCGGTGCTAGGGGG 61.049 60.000 0.42 0.00 0.00 5.40
406 418 1.762460 CTGATCGGTGCTAGGGGGT 60.762 63.158 0.00 0.00 0.00 4.95
407 419 2.032860 CTGATCGGTGCTAGGGGGTG 62.033 65.000 0.00 0.00 0.00 4.61
408 420 1.760875 GATCGGTGCTAGGGGGTGA 60.761 63.158 0.00 0.00 0.00 4.02
409 421 1.074471 ATCGGTGCTAGGGGGTGAT 60.074 57.895 0.00 0.00 0.00 3.06
410 422 0.694444 ATCGGTGCTAGGGGGTGATT 60.694 55.000 0.00 0.00 0.00 2.57
411 423 1.146263 CGGTGCTAGGGGGTGATTC 59.854 63.158 0.00 0.00 0.00 2.52
412 424 1.622607 CGGTGCTAGGGGGTGATTCA 61.623 60.000 0.00 0.00 0.00 2.57
413 425 0.846693 GGTGCTAGGGGGTGATTCAT 59.153 55.000 0.00 0.00 0.00 2.57
414 426 1.202818 GGTGCTAGGGGGTGATTCATC 60.203 57.143 0.00 0.00 0.00 2.92
415 427 1.771255 GTGCTAGGGGGTGATTCATCT 59.229 52.381 0.00 0.00 0.00 2.90
416 428 1.770658 TGCTAGGGGGTGATTCATCTG 59.229 52.381 0.00 0.00 0.00 2.90
417 429 1.072965 GCTAGGGGGTGATTCATCTGG 59.927 57.143 0.00 0.00 0.00 3.86
418 430 2.412591 CTAGGGGGTGATTCATCTGGT 58.587 52.381 0.00 0.00 0.00 4.00
419 431 1.686236 AGGGGGTGATTCATCTGGTT 58.314 50.000 0.00 0.00 0.00 3.67
420 432 2.003072 AGGGGGTGATTCATCTGGTTT 58.997 47.619 0.00 0.00 0.00 3.27
421 433 3.197983 AGGGGGTGATTCATCTGGTTTA 58.802 45.455 0.00 0.00 0.00 2.01
422 434 3.203040 AGGGGGTGATTCATCTGGTTTAG 59.797 47.826 0.00 0.00 0.00 1.85
423 435 3.555966 GGGGTGATTCATCTGGTTTAGG 58.444 50.000 0.00 0.00 0.00 2.69
424 436 3.202151 GGGGTGATTCATCTGGTTTAGGA 59.798 47.826 0.00 0.00 0.00 2.94
425 437 4.325030 GGGGTGATTCATCTGGTTTAGGAA 60.325 45.833 0.00 0.00 0.00 3.36
426 438 5.261216 GGGTGATTCATCTGGTTTAGGAAA 58.739 41.667 0.00 0.00 0.00 3.13
427 439 5.358160 GGGTGATTCATCTGGTTTAGGAAAG 59.642 44.000 0.00 0.00 0.00 2.62
428 440 5.946377 GGTGATTCATCTGGTTTAGGAAAGT 59.054 40.000 0.00 0.00 0.00 2.66
429 441 7.110155 GGTGATTCATCTGGTTTAGGAAAGTA 58.890 38.462 0.00 0.00 0.00 2.24
430 442 7.065923 GGTGATTCATCTGGTTTAGGAAAGTAC 59.934 40.741 0.00 0.00 0.00 2.73
431 443 7.606456 GTGATTCATCTGGTTTAGGAAAGTACA 59.394 37.037 0.00 0.00 0.00 2.90
432 444 7.824289 TGATTCATCTGGTTTAGGAAAGTACAG 59.176 37.037 0.00 0.00 0.00 2.74
433 445 6.049955 TCATCTGGTTTAGGAAAGTACAGG 57.950 41.667 0.00 0.00 0.00 4.00
434 446 4.903045 TCTGGTTTAGGAAAGTACAGGG 57.097 45.455 0.00 0.00 0.00 4.45
435 447 3.585732 TCTGGTTTAGGAAAGTACAGGGG 59.414 47.826 0.00 0.00 0.00 4.79
436 448 2.645797 TGGTTTAGGAAAGTACAGGGGG 59.354 50.000 0.00 0.00 0.00 5.40
437 449 2.646297 GGTTTAGGAAAGTACAGGGGGT 59.354 50.000 0.00 0.00 0.00 4.95
438 450 3.074985 GGTTTAGGAAAGTACAGGGGGTT 59.925 47.826 0.00 0.00 0.00 4.11
439 451 4.289410 GGTTTAGGAAAGTACAGGGGGTTA 59.711 45.833 0.00 0.00 0.00 2.85
440 452 5.248640 GTTTAGGAAAGTACAGGGGGTTAC 58.751 45.833 0.00 0.00 0.00 2.50
441 453 2.994355 AGGAAAGTACAGGGGGTTACA 58.006 47.619 0.00 0.00 0.00 2.41
442 454 3.538387 AGGAAAGTACAGGGGGTTACAT 58.462 45.455 0.00 0.00 0.00 2.29
443 455 4.702196 AGGAAAGTACAGGGGGTTACATA 58.298 43.478 0.00 0.00 0.00 2.29
444 456 4.472470 AGGAAAGTACAGGGGGTTACATAC 59.528 45.833 0.00 0.00 0.00 2.39
445 457 4.384537 GGAAAGTACAGGGGGTTACATACC 60.385 50.000 0.00 0.00 46.99 2.73
446 458 3.790022 AGTACAGGGGGTTACATACCT 57.210 47.619 0.00 0.00 46.86 3.08
449 461 1.591768 CAGGGGGTTACATACCTGGT 58.408 55.000 4.05 4.05 46.86 4.00
450 462 1.920351 CAGGGGGTTACATACCTGGTT 59.080 52.381 3.84 0.00 46.86 3.67
451 463 2.310647 CAGGGGGTTACATACCTGGTTT 59.689 50.000 3.84 0.00 46.86 3.27
452 464 2.998186 AGGGGGTTACATACCTGGTTTT 59.002 45.455 3.84 0.00 46.86 2.43
453 465 4.018233 CAGGGGGTTACATACCTGGTTTTA 60.018 45.833 3.84 0.00 46.86 1.52
454 466 4.228895 AGGGGGTTACATACCTGGTTTTAG 59.771 45.833 3.84 0.00 46.86 1.85
455 467 4.227982 GGGGGTTACATACCTGGTTTTAGA 59.772 45.833 3.84 0.00 46.86 2.10
456 468 5.188434 GGGGTTACATACCTGGTTTTAGAC 58.812 45.833 3.84 0.00 46.86 2.59
457 469 5.188434 GGGTTACATACCTGGTTTTAGACC 58.812 45.833 3.84 8.59 46.86 3.85
458 470 5.045359 GGGTTACATACCTGGTTTTAGACCT 60.045 44.000 3.84 0.00 45.39 3.85
459 471 6.479006 GGTTACATACCTGGTTTTAGACCTT 58.521 40.000 3.84 0.00 43.49 3.50
460 472 7.311234 GGGTTACATACCTGGTTTTAGACCTTA 60.311 40.741 3.84 0.00 45.39 2.69
461 473 7.767659 GGTTACATACCTGGTTTTAGACCTTAG 59.232 40.741 3.84 0.00 43.49 2.18
469 481 5.519183 GGTTTTAGACCTTAGGGGGTAAA 57.481 43.478 2.32 0.82 45.55 2.01
470 482 5.256474 GGTTTTAGACCTTAGGGGGTAAAC 58.744 45.833 2.32 7.80 45.55 2.01
471 483 5.222109 GGTTTTAGACCTTAGGGGGTAAACA 60.222 44.000 16.79 3.71 45.55 2.83
472 484 5.767277 TTTAGACCTTAGGGGGTAAACAG 57.233 43.478 2.32 0.00 40.06 3.16
473 485 2.558974 AGACCTTAGGGGGTAAACAGG 58.441 52.381 2.32 0.00 40.06 4.00
474 486 0.997363 ACCTTAGGGGGTAAACAGGC 59.003 55.000 2.32 0.00 37.90 4.85
475 487 0.257905 CCTTAGGGGGTAAACAGGCC 59.742 60.000 0.00 0.00 0.00 5.19
476 488 0.107361 CTTAGGGGGTAAACAGGCCG 60.107 60.000 0.00 0.00 0.00 6.13
477 489 1.564483 TTAGGGGGTAAACAGGCCGG 61.564 60.000 0.00 0.00 0.00 6.13
478 490 2.769145 TAGGGGGTAAACAGGCCGGT 62.769 60.000 1.28 1.28 0.00 5.28
479 491 2.437449 GGGGTAAACAGGCCGGTT 59.563 61.111 16.16 16.16 0.00 4.44
480 492 1.228644 GGGGTAAACAGGCCGGTTT 60.229 57.895 31.93 31.93 43.08 3.27
481 493 1.529152 GGGGTAAACAGGCCGGTTTG 61.529 60.000 35.15 15.53 40.91 2.93
482 494 0.824595 GGGTAAACAGGCCGGTTTGT 60.825 55.000 35.15 18.88 40.91 2.83
483 495 0.312729 GGTAAACAGGCCGGTTTGTG 59.687 55.000 35.15 14.43 40.91 3.33
484 496 1.310904 GTAAACAGGCCGGTTTGTGA 58.689 50.000 35.15 18.80 40.91 3.58
485 497 1.677052 GTAAACAGGCCGGTTTGTGAA 59.323 47.619 35.15 18.47 40.91 3.18
486 498 1.187087 AAACAGGCCGGTTTGTGAAA 58.813 45.000 29.74 0.00 39.40 2.69
487 499 1.408969 AACAGGCCGGTTTGTGAAAT 58.591 45.000 16.16 0.00 0.00 2.17
488 500 0.958822 ACAGGCCGGTTTGTGAAATC 59.041 50.000 1.28 0.00 0.00 2.17
489 501 0.243636 CAGGCCGGTTTGTGAAATCC 59.756 55.000 1.90 0.00 0.00 3.01
490 502 0.112412 AGGCCGGTTTGTGAAATCCT 59.888 50.000 1.90 0.00 0.00 3.24
491 503 1.353022 AGGCCGGTTTGTGAAATCCTA 59.647 47.619 1.90 0.00 0.00 2.94
492 504 1.743394 GGCCGGTTTGTGAAATCCTAG 59.257 52.381 1.90 0.00 0.00 3.02
493 505 1.743394 GCCGGTTTGTGAAATCCTAGG 59.257 52.381 0.82 0.82 0.00 3.02
494 506 2.365582 CCGGTTTGTGAAATCCTAGGG 58.634 52.381 9.46 0.00 0.00 3.53
495 507 2.365582 CGGTTTGTGAAATCCTAGGGG 58.634 52.381 9.46 0.00 0.00 4.79
496 508 2.735151 GGTTTGTGAAATCCTAGGGGG 58.265 52.381 9.46 0.00 0.00 5.40
497 509 2.042569 GGTTTGTGAAATCCTAGGGGGT 59.957 50.000 9.46 0.00 36.25 4.95
498 510 3.501568 GGTTTGTGAAATCCTAGGGGGTT 60.502 47.826 9.46 0.22 37.58 4.11
499 511 4.264038 GGTTTGTGAAATCCTAGGGGGTTA 60.264 45.833 9.46 0.00 34.29 2.85
500 512 5.326900 GTTTGTGAAATCCTAGGGGGTTAA 58.673 41.667 9.46 0.00 34.29 2.01
501 513 4.855298 TGTGAAATCCTAGGGGGTTAAG 57.145 45.455 9.46 0.00 34.29 1.85
502 514 4.180723 TGTGAAATCCTAGGGGGTTAAGT 58.819 43.478 9.46 0.00 34.29 2.24
503 515 4.018779 TGTGAAATCCTAGGGGGTTAAGTG 60.019 45.833 9.46 0.00 34.29 3.16
504 516 3.526019 TGAAATCCTAGGGGGTTAAGTGG 59.474 47.826 9.46 0.00 34.29 4.00
505 517 3.519370 AATCCTAGGGGGTTAAGTGGA 57.481 47.619 9.46 0.00 33.48 4.02
506 518 2.259014 TCCTAGGGGGTTAAGTGGAC 57.741 55.000 9.46 0.00 36.25 4.02
507 519 1.726352 TCCTAGGGGGTTAAGTGGACT 59.274 52.381 9.46 0.00 36.25 3.85
508 520 2.114871 TCCTAGGGGGTTAAGTGGACTT 59.885 50.000 9.46 0.00 36.87 3.01
509 521 2.504585 CCTAGGGGGTTAAGTGGACTTC 59.495 54.545 0.00 0.00 37.40 3.01
510 522 2.435203 AGGGGGTTAAGTGGACTTCT 57.565 50.000 0.00 0.00 37.40 2.85
511 523 2.714808 AGGGGGTTAAGTGGACTTCTT 58.285 47.619 0.00 0.00 37.40 2.52
512 524 3.061369 AGGGGGTTAAGTGGACTTCTTT 58.939 45.455 0.00 0.00 37.40 2.52
513 525 3.074094 AGGGGGTTAAGTGGACTTCTTTC 59.926 47.826 0.00 0.00 37.40 2.62
514 526 3.181437 GGGGGTTAAGTGGACTTCTTTCA 60.181 47.826 0.00 0.00 37.40 2.69
515 527 4.466827 GGGGTTAAGTGGACTTCTTTCAA 58.533 43.478 0.00 0.00 37.40 2.69
516 528 4.519350 GGGGTTAAGTGGACTTCTTTCAAG 59.481 45.833 0.00 0.00 37.40 3.02
517 529 4.023107 GGGTTAAGTGGACTTCTTTCAAGC 60.023 45.833 0.00 0.00 37.40 4.01
518 530 4.822350 GGTTAAGTGGACTTCTTTCAAGCT 59.178 41.667 0.00 0.00 37.40 3.74
519 531 5.995897 GGTTAAGTGGACTTCTTTCAAGCTA 59.004 40.000 0.00 0.00 37.40 3.32
520 532 6.147985 GGTTAAGTGGACTTCTTTCAAGCTAG 59.852 42.308 0.00 0.00 37.40 3.42
521 533 3.669536 AGTGGACTTCTTTCAAGCTAGC 58.330 45.455 6.62 6.62 0.00 3.42
522 534 2.744741 GTGGACTTCTTTCAAGCTAGCC 59.255 50.000 12.13 0.00 0.00 3.93
523 535 2.639839 TGGACTTCTTTCAAGCTAGCCT 59.360 45.455 12.13 0.00 0.00 4.58
524 536 3.073062 TGGACTTCTTTCAAGCTAGCCTT 59.927 43.478 12.13 2.15 0.00 4.35
525 537 4.286032 TGGACTTCTTTCAAGCTAGCCTTA 59.714 41.667 12.13 0.00 31.00 2.69
526 538 4.632251 GGACTTCTTTCAAGCTAGCCTTAC 59.368 45.833 12.13 0.00 31.00 2.34
527 539 4.580868 ACTTCTTTCAAGCTAGCCTTACC 58.419 43.478 12.13 0.00 31.00 2.85
528 540 3.247006 TCTTTCAAGCTAGCCTTACCG 57.753 47.619 12.13 0.00 31.00 4.02
529 541 2.829720 TCTTTCAAGCTAGCCTTACCGA 59.170 45.455 12.13 0.00 31.00 4.69
533 545 4.585955 TCAAGCTAGCCTTACCGATAAG 57.414 45.455 12.13 0.00 38.04 1.73
536 548 4.587584 AGCTAGCCTTACCGATAAGTTC 57.412 45.455 12.13 0.00 36.77 3.01
582 594 1.659098 CGATGGTGCGTTTTACTCCTC 59.341 52.381 0.00 0.00 0.00 3.71
658 670 1.811965 CATGCCGACATTTCTGTTCCA 59.188 47.619 0.00 0.00 35.14 3.53
670 682 4.737855 TTCTGTTCCACTATACTCTGCC 57.262 45.455 0.00 0.00 0.00 4.85
691 703 0.318699 CTCGAGTCCTGTTGCGTTCA 60.319 55.000 3.62 0.00 0.00 3.18
742 756 0.325671 TGAGAGGGGCCTGACCTAAG 60.326 60.000 0.84 0.00 38.79 2.18
743 757 1.690985 AGAGGGGCCTGACCTAAGC 60.691 63.158 0.84 0.00 38.79 3.09
744 758 1.995626 GAGGGGCCTGACCTAAGCA 60.996 63.158 0.84 0.00 38.79 3.91
745 759 1.977293 GAGGGGCCTGACCTAAGCAG 61.977 65.000 0.84 0.00 38.79 4.24
746 760 2.124529 GGGCCTGACCTAAGCAGC 60.125 66.667 0.84 0.00 39.10 5.25
747 761 2.124529 GGCCTGACCTAAGCAGCC 60.125 66.667 0.00 0.00 34.51 4.85
748 762 2.671070 GCCTGACCTAAGCAGCCA 59.329 61.111 0.00 0.00 32.06 4.75
749 763 1.225704 GCCTGACCTAAGCAGCCAT 59.774 57.895 0.00 0.00 32.06 4.40
750 764 1.099879 GCCTGACCTAAGCAGCCATG 61.100 60.000 0.00 0.00 32.06 3.66
831 850 1.226575 CTCTGCCGTAACGCGATGA 60.227 57.895 15.93 0.00 44.77 2.92
899 919 1.603236 CGTTCCCTGCTCTGCTCTCT 61.603 60.000 0.00 0.00 0.00 3.10
938 958 2.159517 CGAACCCATCTTGTTGCTTAGC 60.160 50.000 0.00 0.00 0.00 3.09
939 959 2.584835 ACCCATCTTGTTGCTTAGCA 57.415 45.000 1.39 1.39 36.47 3.49
940 960 2.162681 ACCCATCTTGTTGCTTAGCAC 58.837 47.619 6.34 3.04 38.71 4.40
941 961 1.474077 CCCATCTTGTTGCTTAGCACC 59.526 52.381 6.34 0.00 38.71 5.01
943 963 1.131126 CATCTTGTTGCTTAGCACCGG 59.869 52.381 6.34 0.00 38.71 5.28
1017 1304 1.705002 CCACTCCCACACAGGAACCA 61.705 60.000 0.00 0.00 41.22 3.67
1019 1306 0.923358 ACTCCCACACAGGAACCAAA 59.077 50.000 0.00 0.00 41.22 3.28
1064 1351 1.403382 CCACTCGTCAGATCCACACAG 60.403 57.143 0.00 0.00 0.00 3.66
1125 1421 1.211190 GGCGCTTTTCTGCTTCCTG 59.789 57.895 7.64 0.00 0.00 3.86
1165 1467 3.876589 CTCAACACCACCGACCCCG 62.877 68.421 0.00 0.00 0.00 5.73
1314 1616 4.024984 CACCCCCTCCCTCCCTCA 62.025 72.222 0.00 0.00 0.00 3.86
1316 1618 4.024984 CCCCCTCCCTCCCTCACA 62.025 72.222 0.00 0.00 0.00 3.58
1508 1813 7.543756 GGCTCATGCTACAAGGTAAATTAAAA 58.456 34.615 0.00 0.00 39.59 1.52
1509 1814 8.197439 GGCTCATGCTACAAGGTAAATTAAAAT 58.803 33.333 0.00 0.00 39.59 1.82
1578 1883 1.133761 ACTAGTAGGCCGATCTGCAGA 60.134 52.381 20.79 20.79 0.00 4.26
1628 1937 5.483685 AGTAATGTATCTGTGGTGTGTGT 57.516 39.130 0.00 0.00 0.00 3.72
1629 1938 6.599356 AGTAATGTATCTGTGGTGTGTGTA 57.401 37.500 0.00 0.00 0.00 2.90
1630 1939 6.631016 AGTAATGTATCTGTGGTGTGTGTAG 58.369 40.000 0.00 0.00 0.00 2.74
1631 1940 5.483685 AATGTATCTGTGGTGTGTGTAGT 57.516 39.130 0.00 0.00 0.00 2.73
1636 1945 3.527533 TCTGTGGTGTGTGTAGTTGTTC 58.472 45.455 0.00 0.00 0.00 3.18
1649 1958 0.384353 GTTGTTCAGTCGCTTTCCGC 60.384 55.000 0.00 0.00 36.73 5.54
1693 2010 0.673644 GCCGTTGCAGCTTAGGAAGA 60.674 55.000 0.00 0.00 37.47 2.87
1696 2013 1.813513 GTTGCAGCTTAGGAAGAGCA 58.186 50.000 0.00 3.57 42.56 4.26
1769 2087 4.813750 TCTGTTTCAGATCAGATGCAGA 57.186 40.909 14.02 14.02 35.39 4.26
1976 2351 4.308458 ACACCTGCAGCGCCGTAA 62.308 61.111 8.66 0.00 0.00 3.18
1983 2358 1.445582 GCAGCGCCGTAACAGTACT 60.446 57.895 2.29 0.00 0.00 2.73
1984 2359 1.683790 GCAGCGCCGTAACAGTACTG 61.684 60.000 21.44 21.44 0.00 2.74
1988 2363 0.734942 CGCCGTAACAGTACTGGTGG 60.735 60.000 23.91 17.48 34.01 4.61
2008 2389 5.242838 GGTGGAACATTGAGAATTTGTACCA 59.757 40.000 0.00 0.00 44.52 3.25
2063 2444 1.807742 CATCGTCCGGGCAGTTAAAAA 59.192 47.619 6.96 0.00 0.00 1.94
2068 2450 1.957877 TCCGGGCAGTTAAAAAGTTGG 59.042 47.619 0.00 0.00 0.00 3.77
2167 2603 0.678395 CACACACACTCTCCTCTGCT 59.322 55.000 0.00 0.00 0.00 4.24
2311 2938 3.492656 CCCATTTCCGTCTCGTATCACAT 60.493 47.826 0.00 0.00 0.00 3.21
2367 2995 2.739704 CGCCGCAAGATCGAGCAAA 61.740 57.895 2.38 0.00 43.02 3.68
2438 3084 8.971321 CAACTTCTCCTTTCATACAACAATTTG 58.029 33.333 0.00 0.00 38.83 2.32
2456 3137 8.912787 ACAATTTGTAAGTAGAGTACGATCTG 57.087 34.615 0.00 0.00 0.00 2.90
2463 3144 2.730934 AGAGTACGATCTGGTGGCTA 57.269 50.000 0.00 0.00 0.00 3.93
2465 3146 3.362706 AGAGTACGATCTGGTGGCTAAA 58.637 45.455 0.00 0.00 0.00 1.85
2466 3147 3.961408 AGAGTACGATCTGGTGGCTAAAT 59.039 43.478 0.00 0.00 0.00 1.40
2467 3148 5.138276 AGAGTACGATCTGGTGGCTAAATA 58.862 41.667 0.00 0.00 0.00 1.40
2468 3149 5.009811 AGAGTACGATCTGGTGGCTAAATAC 59.990 44.000 0.00 0.00 0.00 1.89
2469 3150 3.093717 ACGATCTGGTGGCTAAATACG 57.906 47.619 0.00 0.00 0.00 3.06
2470 3151 2.223971 ACGATCTGGTGGCTAAATACGG 60.224 50.000 0.00 0.00 0.00 4.02
2471 3152 2.223971 CGATCTGGTGGCTAAATACGGT 60.224 50.000 0.00 0.00 0.00 4.83
2472 3153 2.684001 TCTGGTGGCTAAATACGGTG 57.316 50.000 0.00 0.00 0.00 4.94
2473 3154 1.014352 CTGGTGGCTAAATACGGTGC 58.986 55.000 0.00 0.00 0.00 5.01
2474 3155 0.616371 TGGTGGCTAAATACGGTGCT 59.384 50.000 0.00 0.00 0.00 4.40
2475 3156 1.296727 GGTGGCTAAATACGGTGCTC 58.703 55.000 0.00 0.00 0.00 4.26
2476 3157 0.928229 GTGGCTAAATACGGTGCTCG 59.072 55.000 0.00 0.00 45.88 5.03
2486 3167 4.000557 GGTGCTCGTGTGCGTGTG 62.001 66.667 0.00 0.00 39.49 3.82
2487 3168 3.261951 GTGCTCGTGTGCGTGTGT 61.262 61.111 0.00 0.00 39.49 3.72
2488 3169 3.261216 TGCTCGTGTGCGTGTGTG 61.261 61.111 0.00 0.00 39.49 3.82
2491 3172 2.870341 CTCGTGTGCGTGTGTGTGG 61.870 63.158 0.00 0.00 39.49 4.17
2553 3246 0.697079 TCCACGTGGAGGAGTACTCT 59.303 55.000 33.23 8.54 45.83 3.24
2880 3610 6.017605 GGAGTTACTAGTAATGCTACTACGCA 60.018 42.308 18.03 0.00 45.10 5.24
2929 3660 1.975680 AGTCATTGGGAGTGTACGGTT 59.024 47.619 0.00 0.00 0.00 4.44
2931 3662 1.002659 TCATTGGGAGTGTACGGTTGG 59.997 52.381 0.00 0.00 0.00 3.77
2932 3663 1.061546 ATTGGGAGTGTACGGTTGGT 58.938 50.000 0.00 0.00 0.00 3.67
2933 3664 0.393820 TTGGGAGTGTACGGTTGGTC 59.606 55.000 0.00 0.00 0.00 4.02
2934 3665 0.759812 TGGGAGTGTACGGTTGGTCA 60.760 55.000 0.00 0.00 0.00 4.02
2935 3666 0.611714 GGGAGTGTACGGTTGGTCAT 59.388 55.000 0.00 0.00 0.00 3.06
2936 3667 1.002773 GGGAGTGTACGGTTGGTCATT 59.997 52.381 0.00 0.00 0.00 2.57
2937 3668 2.073816 GGAGTGTACGGTTGGTCATTG 58.926 52.381 0.00 0.00 0.00 2.82
2938 3669 1.463444 GAGTGTACGGTTGGTCATTGC 59.537 52.381 0.00 0.00 0.00 3.56
2939 3670 0.165079 GTGTACGGTTGGTCATTGCG 59.835 55.000 0.00 0.00 0.00 4.85
3015 3755 6.693315 TTCTAGGTGAGAAAAGTTTGGTTG 57.307 37.500 0.00 0.00 41.39 3.77
3016 3756 5.130350 TCTAGGTGAGAAAAGTTTGGTTGG 58.870 41.667 0.00 0.00 0.00 3.77
3017 3757 3.031013 AGGTGAGAAAAGTTTGGTTGGG 58.969 45.455 0.00 0.00 0.00 4.12
3018 3758 2.483013 GGTGAGAAAAGTTTGGTTGGGC 60.483 50.000 0.00 0.00 0.00 5.36
3019 3759 1.407258 TGAGAAAAGTTTGGTTGGGCG 59.593 47.619 0.00 0.00 0.00 6.13
3020 3760 0.104120 AGAAAAGTTTGGTTGGGCGC 59.896 50.000 0.00 0.00 0.00 6.53
3021 3761 1.212455 GAAAAGTTTGGTTGGGCGCG 61.212 55.000 0.00 0.00 0.00 6.86
3022 3762 2.636778 AAAAGTTTGGTTGGGCGCGG 62.637 55.000 8.83 0.00 0.00 6.46
3037 3777 4.082523 CGGGTGCGTCCATGGAGT 62.083 66.667 16.81 0.00 38.11 3.85
3043 3783 1.745489 GCGTCCATGGAGTTGGGTC 60.745 63.158 16.81 0.00 37.37 4.46
3045 3785 0.108138 CGTCCATGGAGTTGGGTCTC 60.108 60.000 16.81 0.00 37.37 3.36
3064 3804 1.762858 GGTCTGGGTCTCTAGGGGC 60.763 68.421 0.00 0.00 0.00 5.80
3074 3814 0.671251 CTCTAGGGGCGTGATGAGTC 59.329 60.000 0.00 0.00 0.00 3.36
3257 3999 3.003378 GTGTTGTACTTGTGCCTCCTTTC 59.997 47.826 0.00 0.00 0.00 2.62
3267 4015 2.099756 GTGCCTCCTTTCATTATGCACC 59.900 50.000 0.00 0.00 41.17 5.01
3270 4018 3.217626 CCTCCTTTCATTATGCACCTCC 58.782 50.000 0.00 0.00 0.00 4.30
3273 4021 2.954318 CCTTTCATTATGCACCTCCAGG 59.046 50.000 0.00 0.00 42.17 4.45
3287 4035 4.307443 CCTCCAGGTTTCTTTTTGTGAC 57.693 45.455 0.00 0.00 0.00 3.67
3290 4038 5.323371 TCCAGGTTTCTTTTTGTGACTTG 57.677 39.130 0.00 0.00 0.00 3.16
3292 4040 5.102313 CCAGGTTTCTTTTTGTGACTTGTC 58.898 41.667 0.00 0.00 0.00 3.18
3296 4044 7.645340 CAGGTTTCTTTTTGTGACTTGTCTATG 59.355 37.037 2.35 0.00 0.00 2.23
3306 4054 9.836864 TTTGTGACTTGTCTATGATATAAGCAT 57.163 29.630 2.35 0.00 0.00 3.79
3307 4055 9.836864 TTGTGACTTGTCTATGATATAAGCATT 57.163 29.630 2.35 0.00 0.00 3.56
3308 4056 9.836864 TGTGACTTGTCTATGATATAAGCATTT 57.163 29.630 2.35 0.00 0.00 2.32
3321 4118 7.391554 TGATATAAGCATTTCTTCAGTATGGGC 59.608 37.037 0.00 0.00 36.25 5.36
3324 4121 5.052693 AGCATTTCTTCAGTATGGGCATA 57.947 39.130 0.00 0.00 36.16 3.14
3325 4122 4.823989 AGCATTTCTTCAGTATGGGCATAC 59.176 41.667 0.00 0.00 42.96 2.39
3336 4133 6.832900 TCAGTATGGGCATACAATTTCATCAA 59.167 34.615 0.00 0.00 44.58 2.57
3337 4134 7.341512 TCAGTATGGGCATACAATTTCATCAAA 59.658 33.333 0.00 0.00 44.58 2.69
3338 4135 8.145767 CAGTATGGGCATACAATTTCATCAAAT 58.854 33.333 0.00 0.00 44.58 2.32
3343 4140 7.099120 GGGCATACAATTTCATCAAATATCCC 58.901 38.462 0.00 0.00 31.51 3.85
3375 4175 1.254954 AGTTCCGGGACAGTGTACTC 58.745 55.000 17.22 0.00 0.00 2.59
3377 4177 0.538057 TTCCGGGACAGTGTACTCGT 60.538 55.000 5.24 0.00 0.00 4.18
3382 4182 0.810016 GGACAGTGTACTCGTCTCCC 59.190 60.000 0.00 0.00 0.00 4.30
3406 4213 2.358984 GGGAAAGTTGGCGCCGTA 60.359 61.111 23.90 9.84 0.00 4.02
3417 4224 0.519961 GGCGCCGTACATTTGAAAGT 59.480 50.000 12.58 0.00 0.00 2.66
3489 4296 2.667448 CGGCCTTTTACCGCTTCTTTTC 60.667 50.000 0.00 0.00 44.90 2.29
3561 4368 1.594293 ACGCGGCCGAATTATCCAG 60.594 57.895 33.48 9.72 38.29 3.86
3567 4374 1.694696 GGCCGAATTATCCAGTCTCCT 59.305 52.381 0.00 0.00 0.00 3.69
3590 4397 3.808036 GCTGCGGCCTTCGATAAA 58.192 55.556 6.12 0.00 42.43 1.40
3591 4398 1.643832 GCTGCGGCCTTCGATAAAG 59.356 57.895 6.12 0.00 42.43 1.85
3592 4399 1.643832 CTGCGGCCTTCGATAAAGC 59.356 57.895 0.00 0.00 42.43 3.51
3602 4409 4.500035 GCCTTCGATAAAGCAGCTACTACT 60.500 45.833 0.00 0.00 33.29 2.57
3609 4416 3.673543 AAGCAGCTACTACTACTCCCT 57.326 47.619 0.00 0.00 0.00 4.20
3632 4439 6.540914 CCTACCGTAGATTTTCTTTATGCCAA 59.459 38.462 7.16 0.00 0.00 4.52
3633 4440 6.827586 ACCGTAGATTTTCTTTATGCCAAA 57.172 33.333 0.00 0.00 0.00 3.28
3634 4441 6.852664 ACCGTAGATTTTCTTTATGCCAAAG 58.147 36.000 2.28 2.28 0.00 2.77
3644 4457 0.407528 TATGCCAAAGGTCCTGCCAA 59.592 50.000 0.00 0.00 40.61 4.52
3647 4460 0.037046 GCCAAAGGTCCTGCCAATTG 60.037 55.000 0.00 0.00 40.61 2.32
3650 4463 2.181975 CAAAGGTCCTGCCAATTGGAT 58.818 47.619 29.02 1.13 40.61 3.41
3659 4472 2.352651 CTGCCAATTGGATGTGTACGAG 59.647 50.000 29.02 4.87 37.39 4.18
3699 4512 1.968050 GAGAGAAATTCCCCGGCCGA 61.968 60.000 30.73 6.75 0.00 5.54
3826 4641 3.110178 GTACCGCGTCGCTTGCTT 61.110 61.111 16.36 0.00 0.00 3.91
3827 4642 3.109547 TACCGCGTCGCTTGCTTG 61.110 61.111 16.36 0.00 0.00 4.01
3916 4803 3.341629 ATCCCCACCCCAGCACTG 61.342 66.667 0.00 0.00 0.00 3.66
3947 4834 0.748450 TTCTTATCCTACACGGGCCG 59.252 55.000 27.06 27.06 0.00 6.13
3948 4835 1.111116 TCTTATCCTACACGGGCCGG 61.111 60.000 31.78 21.03 0.00 6.13
3949 4836 2.095978 CTTATCCTACACGGGCCGGG 62.096 65.000 29.70 29.70 35.82 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.970639 GTCTACCGAGCTGGCACA 59.029 61.111 0.00 0.00 43.94 4.57
47 56 4.112341 ACTGCGCCGTCGTCTACC 62.112 66.667 4.18 0.00 38.14 3.18
52 61 4.884257 ACAACACTGCGCCGTCGT 62.884 61.111 4.18 2.96 38.14 4.34
72 81 2.342648 GTCCGCTTCGTCCACCTT 59.657 61.111 0.00 0.00 0.00 3.50
73 82 4.052229 CGTCCGCTTCGTCCACCT 62.052 66.667 0.00 0.00 0.00 4.00
127 139 1.488957 GAGTTTCTCGTGCGCTGTG 59.511 57.895 9.73 2.19 0.00 3.66
156 168 2.813179 CGCCTTTGATCGGCCTTCG 61.813 63.158 0.00 0.00 44.73 3.79
157 169 0.815615 ATCGCCTTTGATCGGCCTTC 60.816 55.000 0.00 0.00 44.73 3.46
158 170 0.394352 AATCGCCTTTGATCGGCCTT 60.394 50.000 0.00 0.00 44.73 4.35
159 171 1.097547 CAATCGCCTTTGATCGGCCT 61.098 55.000 0.00 0.00 44.73 5.19
160 172 1.095228 TCAATCGCCTTTGATCGGCC 61.095 55.000 4.72 0.00 44.73 6.13
161 173 0.947244 ATCAATCGCCTTTGATCGGC 59.053 50.000 3.54 0.28 41.37 5.54
162 174 2.212652 TCATCAATCGCCTTTGATCGG 58.787 47.619 5.94 0.00 42.90 4.18
163 175 3.546815 GGTTCATCAATCGCCTTTGATCG 60.547 47.826 5.94 3.79 42.90 3.69
164 176 3.378112 TGGTTCATCAATCGCCTTTGATC 59.622 43.478 5.94 0.00 42.90 2.92
165 177 3.129287 GTGGTTCATCAATCGCCTTTGAT 59.871 43.478 3.54 3.54 45.03 2.57
166 178 2.487762 GTGGTTCATCAATCGCCTTTGA 59.512 45.455 0.00 0.00 39.77 2.69
167 179 2.228582 TGTGGTTCATCAATCGCCTTTG 59.771 45.455 0.00 0.00 0.00 2.77
168 180 2.489329 CTGTGGTTCATCAATCGCCTTT 59.511 45.455 0.00 0.00 0.00 3.11
169 181 2.086869 CTGTGGTTCATCAATCGCCTT 58.913 47.619 0.00 0.00 0.00 4.35
170 182 1.278985 TCTGTGGTTCATCAATCGCCT 59.721 47.619 0.00 0.00 0.00 5.52
171 183 1.398390 GTCTGTGGTTCATCAATCGCC 59.602 52.381 0.00 0.00 0.00 5.54
172 184 2.094894 CAGTCTGTGGTTCATCAATCGC 59.905 50.000 0.00 0.00 0.00 4.58
173 185 3.588955 TCAGTCTGTGGTTCATCAATCG 58.411 45.455 0.00 0.00 0.00 3.34
174 186 3.373439 GCTCAGTCTGTGGTTCATCAATC 59.627 47.826 0.00 0.00 0.00 2.67
175 187 3.008813 AGCTCAGTCTGTGGTTCATCAAT 59.991 43.478 0.00 0.00 0.00 2.57
176 188 2.369860 AGCTCAGTCTGTGGTTCATCAA 59.630 45.455 0.00 0.00 0.00 2.57
177 189 1.973515 AGCTCAGTCTGTGGTTCATCA 59.026 47.619 0.00 0.00 0.00 3.07
178 190 2.758736 AGCTCAGTCTGTGGTTCATC 57.241 50.000 0.00 0.00 0.00 2.92
179 191 2.289945 GGAAGCTCAGTCTGTGGTTCAT 60.290 50.000 31.90 11.26 44.98 2.57
180 192 1.070758 GGAAGCTCAGTCTGTGGTTCA 59.929 52.381 31.90 3.48 44.98 3.18
181 193 1.346068 AGGAAGCTCAGTCTGTGGTTC 59.654 52.381 27.14 27.14 43.48 3.62
182 194 1.346068 GAGGAAGCTCAGTCTGTGGTT 59.654 52.381 16.87 16.87 34.78 3.67
183 195 0.972883 GAGGAAGCTCAGTCTGTGGT 59.027 55.000 0.00 0.00 0.00 4.16
184 196 0.108898 CGAGGAAGCTCAGTCTGTGG 60.109 60.000 0.00 0.00 0.00 4.17
185 197 0.600557 ACGAGGAAGCTCAGTCTGTG 59.399 55.000 0.00 0.00 0.00 3.66
186 198 0.600557 CACGAGGAAGCTCAGTCTGT 59.399 55.000 0.00 0.00 0.00 3.41
187 199 0.108898 CCACGAGGAAGCTCAGTCTG 60.109 60.000 0.00 0.00 36.89 3.51
188 200 1.882989 GCCACGAGGAAGCTCAGTCT 61.883 60.000 1.86 0.00 36.89 3.24
189 201 1.446966 GCCACGAGGAAGCTCAGTC 60.447 63.158 1.86 0.00 36.89 3.51
190 202 2.659610 GCCACGAGGAAGCTCAGT 59.340 61.111 1.86 0.00 36.89 3.41
191 203 2.125350 GGCCACGAGGAAGCTCAG 60.125 66.667 1.86 0.00 36.89 3.35
192 204 4.069232 CGGCCACGAGGAAGCTCA 62.069 66.667 2.24 0.00 44.60 4.26
193 205 4.821589 CCGGCCACGAGGAAGCTC 62.822 72.222 2.24 0.00 44.60 4.09
225 237 2.437359 GGTAGGCTGCAGCACCAG 60.437 66.667 37.63 1.95 44.36 4.00
226 238 3.248418 TGGTAGGCTGCAGCACCA 61.248 61.111 35.05 35.05 42.52 4.17
227 239 1.899437 TACTGGTAGGCTGCAGCACC 61.899 60.000 37.63 34.24 44.36 5.01
228 240 0.741221 GTACTGGTAGGCTGCAGCAC 60.741 60.000 37.63 27.66 44.36 4.40
229 241 1.596934 GTACTGGTAGGCTGCAGCA 59.403 57.895 37.63 18.09 44.36 4.41
230 242 1.153349 GGTACTGGTAGGCTGCAGC 60.153 63.158 30.88 30.88 41.14 5.25
231 243 0.461961 GAGGTACTGGTAGGCTGCAG 59.538 60.000 10.11 10.11 41.55 4.41
232 244 0.252057 TGAGGTACTGGTAGGCTGCA 60.252 55.000 4.64 0.00 41.55 4.41
233 245 0.902531 TTGAGGTACTGGTAGGCTGC 59.097 55.000 0.00 0.00 41.55 5.25
234 246 2.766263 TCATTGAGGTACTGGTAGGCTG 59.234 50.000 0.00 0.00 41.55 4.85
235 247 2.766828 GTCATTGAGGTACTGGTAGGCT 59.233 50.000 0.00 0.00 41.55 4.58
236 248 2.481449 CGTCATTGAGGTACTGGTAGGC 60.481 54.545 0.00 0.00 41.55 3.93
237 249 2.481449 GCGTCATTGAGGTACTGGTAGG 60.481 54.545 8.06 0.00 41.55 3.18
238 250 2.165641 TGCGTCATTGAGGTACTGGTAG 59.834 50.000 8.06 0.00 41.55 3.18
239 251 2.172679 TGCGTCATTGAGGTACTGGTA 58.827 47.619 8.06 0.00 41.55 3.25
240 252 0.973632 TGCGTCATTGAGGTACTGGT 59.026 50.000 8.06 0.00 41.55 4.00
241 253 2.002586 CTTGCGTCATTGAGGTACTGG 58.997 52.381 8.06 0.00 41.55 4.00
242 254 2.688507 ACTTGCGTCATTGAGGTACTG 58.311 47.619 8.06 2.67 41.55 2.74
244 256 3.846360 ACTACTTGCGTCATTGAGGTAC 58.154 45.455 8.06 0.00 0.00 3.34
245 257 4.530710 AACTACTTGCGTCATTGAGGTA 57.469 40.909 8.06 0.79 0.00 3.08
246 258 3.402628 AACTACTTGCGTCATTGAGGT 57.597 42.857 8.06 0.00 0.00 3.85
247 259 3.120199 CCAAACTACTTGCGTCATTGAGG 60.120 47.826 1.98 1.98 33.27 3.86
248 260 3.120199 CCCAAACTACTTGCGTCATTGAG 60.120 47.826 0.00 0.00 33.27 3.02
249 261 2.811431 CCCAAACTACTTGCGTCATTGA 59.189 45.455 0.00 0.00 33.27 2.57
250 262 2.552315 ACCCAAACTACTTGCGTCATTG 59.448 45.455 0.00 0.00 33.27 2.82
251 263 2.552315 CACCCAAACTACTTGCGTCATT 59.448 45.455 0.00 0.00 33.27 2.57
252 264 2.151202 CACCCAAACTACTTGCGTCAT 58.849 47.619 0.00 0.00 33.27 3.06
253 265 1.588674 CACCCAAACTACTTGCGTCA 58.411 50.000 0.00 0.00 33.27 4.35
254 266 0.237498 GCACCCAAACTACTTGCGTC 59.763 55.000 0.00 0.00 33.27 5.19
255 267 2.327228 GCACCCAAACTACTTGCGT 58.673 52.632 0.00 0.00 33.27 5.24
257 269 1.135689 CATCGCACCCAAACTACTTGC 60.136 52.381 0.00 0.00 33.27 4.01
258 270 2.159627 GTCATCGCACCCAAACTACTTG 59.840 50.000 0.00 0.00 34.52 3.16
259 271 2.423577 GTCATCGCACCCAAACTACTT 58.576 47.619 0.00 0.00 0.00 2.24
260 272 1.338769 GGTCATCGCACCCAAACTACT 60.339 52.381 0.00 0.00 0.00 2.57
261 273 1.084289 GGTCATCGCACCCAAACTAC 58.916 55.000 0.00 0.00 0.00 2.73
262 274 0.981183 AGGTCATCGCACCCAAACTA 59.019 50.000 0.00 0.00 37.09 2.24
263 275 0.606401 CAGGTCATCGCACCCAAACT 60.606 55.000 0.00 0.00 37.09 2.66
264 276 0.605319 TCAGGTCATCGCACCCAAAC 60.605 55.000 0.00 0.00 37.09 2.93
265 277 0.321564 CTCAGGTCATCGCACCCAAA 60.322 55.000 0.00 0.00 37.09 3.28
266 278 1.296392 CTCAGGTCATCGCACCCAA 59.704 57.895 0.00 0.00 37.09 4.12
267 279 2.981302 CTCAGGTCATCGCACCCA 59.019 61.111 0.00 0.00 37.09 4.51
268 280 2.512515 GCTCAGGTCATCGCACCC 60.513 66.667 0.00 0.00 37.09 4.61
269 281 1.375908 TTGCTCAGGTCATCGCACC 60.376 57.895 0.00 0.00 36.58 5.01
270 282 0.950555 TGTTGCTCAGGTCATCGCAC 60.951 55.000 0.00 0.00 31.24 5.34
271 283 0.036105 ATGTTGCTCAGGTCATCGCA 60.036 50.000 0.00 0.00 0.00 5.10
272 284 0.376152 CATGTTGCTCAGGTCATCGC 59.624 55.000 0.00 0.00 0.00 4.58
273 285 0.376152 GCATGTTGCTCAGGTCATCG 59.624 55.000 0.00 0.00 40.96 3.84
274 286 0.376152 CGCATGTTGCTCAGGTCATC 59.624 55.000 0.00 0.00 42.25 2.92
275 287 0.036105 TCGCATGTTGCTCAGGTCAT 60.036 50.000 0.00 0.00 42.25 3.06
276 288 0.036105 ATCGCATGTTGCTCAGGTCA 60.036 50.000 0.00 0.00 42.25 4.02
277 289 0.376152 CATCGCATGTTGCTCAGGTC 59.624 55.000 0.00 0.00 42.25 3.85
278 290 1.028330 CCATCGCATGTTGCTCAGGT 61.028 55.000 0.00 0.00 42.25 4.00
279 291 1.721664 CCCATCGCATGTTGCTCAGG 61.722 60.000 0.00 0.00 42.25 3.86
280 292 0.745486 TCCCATCGCATGTTGCTCAG 60.745 55.000 0.00 0.00 42.25 3.35
281 293 0.745486 CTCCCATCGCATGTTGCTCA 60.745 55.000 0.00 0.00 42.25 4.26
282 294 0.462581 TCTCCCATCGCATGTTGCTC 60.463 55.000 0.00 0.00 42.25 4.26
283 295 0.035152 TTCTCCCATCGCATGTTGCT 60.035 50.000 0.00 0.00 42.25 3.91
284 296 0.810648 TTTCTCCCATCGCATGTTGC 59.189 50.000 0.00 0.00 40.69 4.17
285 297 1.202222 GCTTTCTCCCATCGCATGTTG 60.202 52.381 0.00 0.00 0.00 3.33
286 298 1.098050 GCTTTCTCCCATCGCATGTT 58.902 50.000 0.00 0.00 0.00 2.71
287 299 0.254178 AGCTTTCTCCCATCGCATGT 59.746 50.000 0.00 0.00 0.00 3.21
288 300 0.661552 CAGCTTTCTCCCATCGCATG 59.338 55.000 0.00 0.00 0.00 4.06
289 301 0.465097 CCAGCTTTCTCCCATCGCAT 60.465 55.000 0.00 0.00 0.00 4.73
290 302 1.078214 CCAGCTTTCTCCCATCGCA 60.078 57.895 0.00 0.00 0.00 5.10
291 303 1.821332 CCCAGCTTTCTCCCATCGC 60.821 63.158 0.00 0.00 0.00 4.58
292 304 1.153086 CCCCAGCTTTCTCCCATCG 60.153 63.158 0.00 0.00 0.00 3.84
293 305 1.228510 CCCCCAGCTTTCTCCCATC 59.771 63.158 0.00 0.00 0.00 3.51
294 306 0.850883 TTCCCCCAGCTTTCTCCCAT 60.851 55.000 0.00 0.00 0.00 4.00
295 307 1.465188 TTCCCCCAGCTTTCTCCCA 60.465 57.895 0.00 0.00 0.00 4.37
296 308 1.304617 CTTCCCCCAGCTTTCTCCC 59.695 63.158 0.00 0.00 0.00 4.30
297 309 1.208165 TCCTTCCCCCAGCTTTCTCC 61.208 60.000 0.00 0.00 0.00 3.71
298 310 0.698818 TTCCTTCCCCCAGCTTTCTC 59.301 55.000 0.00 0.00 0.00 2.87
299 311 0.405973 GTTCCTTCCCCCAGCTTTCT 59.594 55.000 0.00 0.00 0.00 2.52
300 312 0.405973 AGTTCCTTCCCCCAGCTTTC 59.594 55.000 0.00 0.00 0.00 2.62
301 313 0.113190 CAGTTCCTTCCCCCAGCTTT 59.887 55.000 0.00 0.00 0.00 3.51
302 314 1.068352 ACAGTTCCTTCCCCCAGCTT 61.068 55.000 0.00 0.00 0.00 3.74
303 315 0.178873 TACAGTTCCTTCCCCCAGCT 60.179 55.000 0.00 0.00 0.00 4.24
304 316 0.919710 ATACAGTTCCTTCCCCCAGC 59.080 55.000 0.00 0.00 0.00 4.85
305 317 2.576191 TGAATACAGTTCCTTCCCCCAG 59.424 50.000 0.00 0.00 0.00 4.45
306 318 2.307686 GTGAATACAGTTCCTTCCCCCA 59.692 50.000 0.00 0.00 0.00 4.96
307 319 2.679930 CGTGAATACAGTTCCTTCCCCC 60.680 54.545 0.00 0.00 0.00 5.40
308 320 2.235402 TCGTGAATACAGTTCCTTCCCC 59.765 50.000 0.00 0.00 0.00 4.81
309 321 3.194968 TCTCGTGAATACAGTTCCTTCCC 59.805 47.826 0.00 0.00 0.00 3.97
310 322 4.174762 GTCTCGTGAATACAGTTCCTTCC 58.825 47.826 0.00 0.00 0.00 3.46
311 323 3.852536 CGTCTCGTGAATACAGTTCCTTC 59.147 47.826 0.00 0.00 0.00 3.46
312 324 3.504906 TCGTCTCGTGAATACAGTTCCTT 59.495 43.478 0.00 0.00 0.00 3.36
313 325 3.079578 TCGTCTCGTGAATACAGTTCCT 58.920 45.455 0.00 0.00 0.00 3.36
314 326 3.119919 AGTCGTCTCGTGAATACAGTTCC 60.120 47.826 0.00 0.00 0.00 3.62
315 327 4.080969 AGTCGTCTCGTGAATACAGTTC 57.919 45.455 0.00 0.00 0.00 3.01
316 328 4.142730 GGTAGTCGTCTCGTGAATACAGTT 60.143 45.833 3.49 0.00 38.33 3.16
317 329 3.373439 GGTAGTCGTCTCGTGAATACAGT 59.627 47.826 3.49 0.00 38.33 3.55
318 330 3.622163 AGGTAGTCGTCTCGTGAATACAG 59.378 47.826 3.49 0.00 38.33 2.74
319 331 3.603532 AGGTAGTCGTCTCGTGAATACA 58.396 45.455 3.49 0.00 38.33 2.29
320 332 3.302350 CGAGGTAGTCGTCTCGTGAATAC 60.302 52.174 0.00 0.00 45.27 1.89
321 333 2.862536 CGAGGTAGTCGTCTCGTGAATA 59.137 50.000 0.00 0.00 45.27 1.75
322 334 1.664659 CGAGGTAGTCGTCTCGTGAAT 59.335 52.381 0.00 0.00 45.27 2.57
323 335 1.073964 CGAGGTAGTCGTCTCGTGAA 58.926 55.000 0.00 0.00 45.27 3.18
324 336 2.746997 CGAGGTAGTCGTCTCGTGA 58.253 57.895 0.00 0.00 45.27 4.35
333 345 1.202498 GGTTATGGGTGCGAGGTAGTC 60.202 57.143 0.00 0.00 0.00 2.59
334 346 0.828677 GGTTATGGGTGCGAGGTAGT 59.171 55.000 0.00 0.00 0.00 2.73
335 347 1.120530 AGGTTATGGGTGCGAGGTAG 58.879 55.000 0.00 0.00 0.00 3.18
336 348 1.575419 AAGGTTATGGGTGCGAGGTA 58.425 50.000 0.00 0.00 0.00 3.08
337 349 0.696501 AAAGGTTATGGGTGCGAGGT 59.303 50.000 0.00 0.00 0.00 3.85
338 350 1.379527 GAAAGGTTATGGGTGCGAGG 58.620 55.000 0.00 0.00 0.00 4.63
339 351 1.339631 TGGAAAGGTTATGGGTGCGAG 60.340 52.381 0.00 0.00 0.00 5.03
340 352 0.693622 TGGAAAGGTTATGGGTGCGA 59.306 50.000 0.00 0.00 0.00 5.10
341 353 0.808755 GTGGAAAGGTTATGGGTGCG 59.191 55.000 0.00 0.00 0.00 5.34
342 354 0.808755 CGTGGAAAGGTTATGGGTGC 59.191 55.000 0.00 0.00 0.00 5.01
343 355 2.081462 GACGTGGAAAGGTTATGGGTG 58.919 52.381 0.00 0.00 0.00 4.61
344 356 1.700739 TGACGTGGAAAGGTTATGGGT 59.299 47.619 0.00 0.00 0.00 4.51
345 357 2.081462 GTGACGTGGAAAGGTTATGGG 58.919 52.381 0.00 0.00 0.00 4.00
346 358 2.081462 GGTGACGTGGAAAGGTTATGG 58.919 52.381 0.00 0.00 0.00 2.74
347 359 2.773487 TGGTGACGTGGAAAGGTTATG 58.227 47.619 0.00 0.00 0.00 1.90
348 360 3.495434 TTGGTGACGTGGAAAGGTTAT 57.505 42.857 0.00 0.00 0.00 1.89
349 361 3.278668 TTTGGTGACGTGGAAAGGTTA 57.721 42.857 0.00 0.00 0.00 2.85
350 362 2.131776 TTTGGTGACGTGGAAAGGTT 57.868 45.000 0.00 0.00 0.00 3.50
351 363 1.746787 GTTTTGGTGACGTGGAAAGGT 59.253 47.619 0.00 0.00 0.00 3.50
352 364 1.066454 GGTTTTGGTGACGTGGAAAGG 59.934 52.381 0.00 0.00 0.00 3.11
353 365 1.268335 CGGTTTTGGTGACGTGGAAAG 60.268 52.381 0.00 0.00 0.00 2.62
354 366 0.733729 CGGTTTTGGTGACGTGGAAA 59.266 50.000 0.00 0.00 0.00 3.13
355 367 1.716826 GCGGTTTTGGTGACGTGGAA 61.717 55.000 0.00 0.00 0.00 3.53
356 368 2.181521 GCGGTTTTGGTGACGTGGA 61.182 57.895 0.00 0.00 0.00 4.02
357 369 2.330041 GCGGTTTTGGTGACGTGG 59.670 61.111 0.00 0.00 0.00 4.94
358 370 2.184167 AGGCGGTTTTGGTGACGTG 61.184 57.895 0.00 0.00 0.00 4.49
359 371 2.184167 CAGGCGGTTTTGGTGACGT 61.184 57.895 0.00 0.00 0.00 4.34
360 372 1.440938 TTCAGGCGGTTTTGGTGACG 61.441 55.000 0.00 0.00 0.00 4.35
361 373 0.741915 TTTCAGGCGGTTTTGGTGAC 59.258 50.000 0.00 0.00 0.00 3.67
362 374 1.475403 TTTTCAGGCGGTTTTGGTGA 58.525 45.000 0.00 0.00 0.00 4.02
363 375 1.930503 GTTTTTCAGGCGGTTTTGGTG 59.069 47.619 0.00 0.00 0.00 4.17
364 376 1.134640 GGTTTTTCAGGCGGTTTTGGT 60.135 47.619 0.00 0.00 0.00 3.67
365 377 1.134670 TGGTTTTTCAGGCGGTTTTGG 60.135 47.619 0.00 0.00 0.00 3.28
366 378 2.301577 TGGTTTTTCAGGCGGTTTTG 57.698 45.000 0.00 0.00 0.00 2.44
367 379 3.133901 AGAATGGTTTTTCAGGCGGTTTT 59.866 39.130 0.00 0.00 0.00 2.43
368 380 2.698274 AGAATGGTTTTTCAGGCGGTTT 59.302 40.909 0.00 0.00 0.00 3.27
369 381 2.035832 CAGAATGGTTTTTCAGGCGGTT 59.964 45.455 0.00 0.00 0.00 4.44
370 382 1.613437 CAGAATGGTTTTTCAGGCGGT 59.387 47.619 0.00 0.00 0.00 5.68
371 383 1.885887 TCAGAATGGTTTTTCAGGCGG 59.114 47.619 0.00 0.00 36.16 6.13
372 384 3.728864 CGATCAGAATGGTTTTTCAGGCG 60.729 47.826 0.00 0.00 36.16 5.52
373 385 3.428045 CCGATCAGAATGGTTTTTCAGGC 60.428 47.826 0.00 0.00 36.16 4.85
374 386 3.758554 ACCGATCAGAATGGTTTTTCAGG 59.241 43.478 0.00 0.00 36.16 3.86
375 387 4.726416 CACCGATCAGAATGGTTTTTCAG 58.274 43.478 0.00 0.00 36.16 3.02
376 388 3.057596 GCACCGATCAGAATGGTTTTTCA 60.058 43.478 0.00 0.00 36.16 2.69
377 389 3.191371 AGCACCGATCAGAATGGTTTTTC 59.809 43.478 0.00 0.00 36.16 2.29
378 390 3.157087 AGCACCGATCAGAATGGTTTTT 58.843 40.909 0.00 0.00 36.16 1.94
379 391 2.795329 AGCACCGATCAGAATGGTTTT 58.205 42.857 0.00 0.00 36.16 2.43
380 392 2.496899 AGCACCGATCAGAATGGTTT 57.503 45.000 0.00 0.00 36.16 3.27
381 393 2.158900 CCTAGCACCGATCAGAATGGTT 60.159 50.000 0.00 0.00 36.16 3.67
382 394 1.414181 CCTAGCACCGATCAGAATGGT 59.586 52.381 0.00 0.00 36.16 3.55
383 395 1.270518 CCCTAGCACCGATCAGAATGG 60.271 57.143 0.00 0.00 36.16 3.16
384 396 1.270518 CCCCTAGCACCGATCAGAATG 60.271 57.143 0.00 0.00 37.54 2.67
385 397 1.051812 CCCCTAGCACCGATCAGAAT 58.948 55.000 0.00 0.00 0.00 2.40
386 398 1.048724 CCCCCTAGCACCGATCAGAA 61.049 60.000 0.00 0.00 0.00 3.02
387 399 1.457643 CCCCCTAGCACCGATCAGA 60.458 63.158 0.00 0.00 0.00 3.27
388 400 1.762460 ACCCCCTAGCACCGATCAG 60.762 63.158 0.00 0.00 0.00 2.90
389 401 2.063979 CACCCCCTAGCACCGATCA 61.064 63.158 0.00 0.00 0.00 2.92
390 402 1.122019 ATCACCCCCTAGCACCGATC 61.122 60.000 0.00 0.00 0.00 3.69
391 403 0.694444 AATCACCCCCTAGCACCGAT 60.694 55.000 0.00 0.00 0.00 4.18
392 404 1.306654 AATCACCCCCTAGCACCGA 60.307 57.895 0.00 0.00 0.00 4.69
393 405 1.146263 GAATCACCCCCTAGCACCG 59.854 63.158 0.00 0.00 0.00 4.94
394 406 0.846693 ATGAATCACCCCCTAGCACC 59.153 55.000 0.00 0.00 0.00 5.01
395 407 1.771255 AGATGAATCACCCCCTAGCAC 59.229 52.381 0.00 0.00 0.00 4.40
396 408 1.770658 CAGATGAATCACCCCCTAGCA 59.229 52.381 0.00 0.00 0.00 3.49
397 409 1.072965 CCAGATGAATCACCCCCTAGC 59.927 57.143 0.00 0.00 0.00 3.42
398 410 2.412591 ACCAGATGAATCACCCCCTAG 58.587 52.381 0.00 0.00 0.00 3.02
399 411 2.587060 ACCAGATGAATCACCCCCTA 57.413 50.000 0.00 0.00 0.00 3.53
400 412 1.686236 AACCAGATGAATCACCCCCT 58.314 50.000 0.00 0.00 0.00 4.79
401 413 2.532250 AAACCAGATGAATCACCCCC 57.468 50.000 0.00 0.00 0.00 5.40
402 414 3.202151 TCCTAAACCAGATGAATCACCCC 59.798 47.826 0.00 0.00 0.00 4.95
403 415 4.503714 TCCTAAACCAGATGAATCACCC 57.496 45.455 0.00 0.00 0.00 4.61
404 416 5.946377 ACTTTCCTAAACCAGATGAATCACC 59.054 40.000 0.00 0.00 0.00 4.02
405 417 7.606456 TGTACTTTCCTAAACCAGATGAATCAC 59.394 37.037 0.00 0.00 0.00 3.06
406 418 7.685481 TGTACTTTCCTAAACCAGATGAATCA 58.315 34.615 0.00 0.00 0.00 2.57
407 419 7.281100 CCTGTACTTTCCTAAACCAGATGAATC 59.719 40.741 0.00 0.00 0.00 2.52
408 420 7.112779 CCTGTACTTTCCTAAACCAGATGAAT 58.887 38.462 0.00 0.00 0.00 2.57
409 421 6.472887 CCTGTACTTTCCTAAACCAGATGAA 58.527 40.000 0.00 0.00 0.00 2.57
410 422 5.045869 CCCTGTACTTTCCTAAACCAGATGA 60.046 44.000 0.00 0.00 0.00 2.92
411 423 5.186198 CCCTGTACTTTCCTAAACCAGATG 58.814 45.833 0.00 0.00 0.00 2.90
412 424 4.227527 CCCCTGTACTTTCCTAAACCAGAT 59.772 45.833 0.00 0.00 0.00 2.90
413 425 3.585732 CCCCTGTACTTTCCTAAACCAGA 59.414 47.826 0.00 0.00 0.00 3.86
414 426 3.308188 CCCCCTGTACTTTCCTAAACCAG 60.308 52.174 0.00 0.00 0.00 4.00
415 427 2.645797 CCCCCTGTACTTTCCTAAACCA 59.354 50.000 0.00 0.00 0.00 3.67
416 428 2.646297 ACCCCCTGTACTTTCCTAAACC 59.354 50.000 0.00 0.00 0.00 3.27
417 429 4.377762 AACCCCCTGTACTTTCCTAAAC 57.622 45.455 0.00 0.00 0.00 2.01
418 430 4.912744 TGTAACCCCCTGTACTTTCCTAAA 59.087 41.667 0.00 0.00 0.00 1.85
419 431 4.501433 TGTAACCCCCTGTACTTTCCTAA 58.499 43.478 0.00 0.00 0.00 2.69
420 432 4.144825 TGTAACCCCCTGTACTTTCCTA 57.855 45.455 0.00 0.00 0.00 2.94
421 433 2.994355 TGTAACCCCCTGTACTTTCCT 58.006 47.619 0.00 0.00 0.00 3.36
422 434 4.384537 GGTATGTAACCCCCTGTACTTTCC 60.385 50.000 0.00 0.00 43.16 3.13
423 435 4.774124 GGTATGTAACCCCCTGTACTTTC 58.226 47.826 0.00 0.00 43.16 2.62
424 436 4.849813 GGTATGTAACCCCCTGTACTTT 57.150 45.455 0.00 0.00 43.16 2.66
448 460 5.879763 TGTTTACCCCCTAAGGTCTAAAAC 58.120 41.667 0.00 0.00 41.58 2.43
449 461 5.014438 CCTGTTTACCCCCTAAGGTCTAAAA 59.986 44.000 0.00 0.00 41.58 1.52
450 462 4.537288 CCTGTTTACCCCCTAAGGTCTAAA 59.463 45.833 0.00 0.00 41.58 1.85
451 463 4.106324 CCTGTTTACCCCCTAAGGTCTAA 58.894 47.826 0.00 0.00 41.58 2.10
452 464 3.727948 CCTGTTTACCCCCTAAGGTCTA 58.272 50.000 0.00 0.00 41.58 2.59
453 465 2.558974 CCTGTTTACCCCCTAAGGTCT 58.441 52.381 0.00 0.00 41.58 3.85
454 466 1.064906 GCCTGTTTACCCCCTAAGGTC 60.065 57.143 0.00 0.00 41.58 3.85
455 467 0.997363 GCCTGTTTACCCCCTAAGGT 59.003 55.000 0.00 0.00 44.37 3.50
456 468 0.257905 GGCCTGTTTACCCCCTAAGG 59.742 60.000 0.00 0.00 0.00 2.69
457 469 0.107361 CGGCCTGTTTACCCCCTAAG 60.107 60.000 0.00 0.00 0.00 2.18
458 470 1.564483 CCGGCCTGTTTACCCCCTAA 61.564 60.000 0.00 0.00 0.00 2.69
459 471 1.996748 CCGGCCTGTTTACCCCCTA 60.997 63.158 0.00 0.00 0.00 3.53
460 472 3.335729 CCGGCCTGTTTACCCCCT 61.336 66.667 0.00 0.00 0.00 4.79
461 473 2.718487 AAACCGGCCTGTTTACCCCC 62.718 60.000 22.18 0.00 36.71 5.40
462 474 1.228644 AAACCGGCCTGTTTACCCC 60.229 57.895 22.18 0.00 36.71 4.95
463 475 0.824595 ACAAACCGGCCTGTTTACCC 60.825 55.000 22.89 0.00 36.33 3.69
464 476 0.312729 CACAAACCGGCCTGTTTACC 59.687 55.000 22.89 0.00 36.33 2.85
465 477 1.310904 TCACAAACCGGCCTGTTTAC 58.689 50.000 22.89 0.00 36.33 2.01
466 478 2.054232 TTCACAAACCGGCCTGTTTA 57.946 45.000 22.89 7.24 36.33 2.01
467 479 1.187087 TTTCACAAACCGGCCTGTTT 58.813 45.000 18.53 18.53 38.95 2.83
468 480 1.339929 GATTTCACAAACCGGCCTGTT 59.660 47.619 6.74 6.74 0.00 3.16
469 481 0.958822 GATTTCACAAACCGGCCTGT 59.041 50.000 0.00 1.26 0.00 4.00
470 482 0.243636 GGATTTCACAAACCGGCCTG 59.756 55.000 0.00 0.44 0.00 4.85
471 483 0.112412 AGGATTTCACAAACCGGCCT 59.888 50.000 0.00 0.00 0.00 5.19
472 484 1.743394 CTAGGATTTCACAAACCGGCC 59.257 52.381 0.00 0.00 0.00 6.13
473 485 1.743394 CCTAGGATTTCACAAACCGGC 59.257 52.381 1.05 0.00 0.00 6.13
474 486 2.365582 CCCTAGGATTTCACAAACCGG 58.634 52.381 11.48 0.00 0.00 5.28
475 487 2.365582 CCCCTAGGATTTCACAAACCG 58.634 52.381 11.48 0.00 33.47 4.44
476 488 2.042569 ACCCCCTAGGATTTCACAAACC 59.957 50.000 11.48 0.00 39.89 3.27
477 489 3.451402 ACCCCCTAGGATTTCACAAAC 57.549 47.619 11.48 0.00 39.89 2.93
478 490 5.075344 ACTTAACCCCCTAGGATTTCACAAA 59.925 40.000 11.48 0.00 39.89 2.83
479 491 4.604490 ACTTAACCCCCTAGGATTTCACAA 59.396 41.667 11.48 0.00 39.89 3.33
480 492 4.018779 CACTTAACCCCCTAGGATTTCACA 60.019 45.833 11.48 0.00 39.89 3.58
481 493 4.524053 CACTTAACCCCCTAGGATTTCAC 58.476 47.826 11.48 0.00 39.89 3.18
482 494 3.526019 CCACTTAACCCCCTAGGATTTCA 59.474 47.826 11.48 0.00 39.89 2.69
483 495 3.784202 TCCACTTAACCCCCTAGGATTTC 59.216 47.826 11.48 0.00 39.89 2.17
484 496 3.526430 GTCCACTTAACCCCCTAGGATTT 59.474 47.826 11.48 2.44 39.89 2.17
485 497 3.120898 GTCCACTTAACCCCCTAGGATT 58.879 50.000 11.48 4.20 39.89 3.01
486 498 2.321296 AGTCCACTTAACCCCCTAGGAT 59.679 50.000 11.48 0.00 39.89 3.24
487 499 1.726352 AGTCCACTTAACCCCCTAGGA 59.274 52.381 11.48 0.00 39.89 2.94
488 500 2.265526 AGTCCACTTAACCCCCTAGG 57.734 55.000 0.06 0.06 43.78 3.02
489 501 3.451890 AGAAGTCCACTTAACCCCCTAG 58.548 50.000 0.00 0.00 36.11 3.02
490 502 3.572661 AGAAGTCCACTTAACCCCCTA 57.427 47.619 0.00 0.00 36.11 3.53
491 503 2.435203 AGAAGTCCACTTAACCCCCT 57.565 50.000 0.00 0.00 36.11 4.79
492 504 3.181437 TGAAAGAAGTCCACTTAACCCCC 60.181 47.826 0.00 0.00 36.11 5.40
493 505 4.094830 TGAAAGAAGTCCACTTAACCCC 57.905 45.455 0.00 0.00 36.11 4.95
494 506 4.023107 GCTTGAAAGAAGTCCACTTAACCC 60.023 45.833 0.00 0.00 36.11 4.11
495 507 4.822350 AGCTTGAAAGAAGTCCACTTAACC 59.178 41.667 0.00 0.00 36.11 2.85
496 508 6.347806 GCTAGCTTGAAAGAAGTCCACTTAAC 60.348 42.308 7.70 0.00 36.11 2.01
497 509 5.701290 GCTAGCTTGAAAGAAGTCCACTTAA 59.299 40.000 7.70 0.00 36.11 1.85
498 510 5.238583 GCTAGCTTGAAAGAAGTCCACTTA 58.761 41.667 7.70 0.00 36.11 2.24
499 511 4.068599 GCTAGCTTGAAAGAAGTCCACTT 58.931 43.478 7.70 0.00 39.23 3.16
500 512 3.558109 GGCTAGCTTGAAAGAAGTCCACT 60.558 47.826 15.72 0.00 0.00 4.00
501 513 2.744741 GGCTAGCTTGAAAGAAGTCCAC 59.255 50.000 15.72 0.00 0.00 4.02
502 514 2.639839 AGGCTAGCTTGAAAGAAGTCCA 59.360 45.455 15.72 0.00 0.00 4.02
503 515 3.342377 AGGCTAGCTTGAAAGAAGTCC 57.658 47.619 15.72 0.00 0.00 3.85
504 516 4.632251 GGTAAGGCTAGCTTGAAAGAAGTC 59.368 45.833 15.72 0.00 0.00 3.01
505 517 4.580868 GGTAAGGCTAGCTTGAAAGAAGT 58.419 43.478 15.72 0.00 0.00 3.01
506 518 3.619038 CGGTAAGGCTAGCTTGAAAGAAG 59.381 47.826 15.72 0.00 0.00 2.85
507 519 3.259876 TCGGTAAGGCTAGCTTGAAAGAA 59.740 43.478 15.72 0.00 0.00 2.52
508 520 2.829720 TCGGTAAGGCTAGCTTGAAAGA 59.170 45.455 15.72 5.58 0.00 2.52
509 521 3.247006 TCGGTAAGGCTAGCTTGAAAG 57.753 47.619 15.72 3.19 0.00 2.62
510 522 3.906720 ATCGGTAAGGCTAGCTTGAAA 57.093 42.857 15.72 0.00 0.00 2.69
511 523 4.404715 ACTTATCGGTAAGGCTAGCTTGAA 59.595 41.667 19.30 0.00 41.33 2.69
512 524 3.958798 ACTTATCGGTAAGGCTAGCTTGA 59.041 43.478 19.30 0.00 41.33 3.02
513 525 4.323553 ACTTATCGGTAAGGCTAGCTTG 57.676 45.455 19.30 0.00 41.33 4.01
514 526 4.404715 TGAACTTATCGGTAAGGCTAGCTT 59.595 41.667 19.30 3.40 41.33 3.74
515 527 3.958798 TGAACTTATCGGTAAGGCTAGCT 59.041 43.478 19.30 0.00 41.33 3.32
516 528 4.317671 TGAACTTATCGGTAAGGCTAGC 57.682 45.455 19.30 6.04 41.33 3.42
517 529 6.586844 GCTTATGAACTTATCGGTAAGGCTAG 59.413 42.308 19.30 8.59 41.33 3.42
518 530 6.267014 AGCTTATGAACTTATCGGTAAGGCTA 59.733 38.462 19.30 5.47 41.33 3.93
519 531 5.070580 AGCTTATGAACTTATCGGTAAGGCT 59.929 40.000 19.30 12.70 41.33 4.58
520 532 5.177696 CAGCTTATGAACTTATCGGTAAGGC 59.822 44.000 19.30 10.75 41.33 4.35
521 533 6.513180 TCAGCTTATGAACTTATCGGTAAGG 58.487 40.000 19.30 1.25 36.30 2.69
536 548 5.276270 CGGGTCATTTCATTTCAGCTTATG 58.724 41.667 0.00 0.00 0.00 1.90
582 594 2.744202 CTCAGAATTCGTCCAGGGTTTG 59.256 50.000 0.00 0.00 0.00 2.93
658 670 3.495453 GGACTCGAGAGGCAGAGTATAGT 60.495 52.174 21.68 0.00 46.52 2.12
670 682 0.039074 AACGCAACAGGACTCGAGAG 60.039 55.000 21.68 8.34 0.00 3.20
691 703 6.371809 TCAGTGAAGAAAAACGCATAAACT 57.628 33.333 0.00 0.00 0.00 2.66
899 919 0.813610 CGGGTTTGTGTGTGAGCAGA 60.814 55.000 0.00 0.00 0.00 4.26
993 1280 2.040359 TGTGTGGGAGTGGGGTGA 60.040 61.111 0.00 0.00 0.00 4.02
1017 1304 2.039084 GGGAGTGAGTGATGGTCTGTTT 59.961 50.000 0.00 0.00 0.00 2.83
1019 1306 1.270907 GGGAGTGAGTGATGGTCTGT 58.729 55.000 0.00 0.00 0.00 3.41
1114 1410 2.347490 GACGGCCAGGAAGCAGAA 59.653 61.111 2.24 0.00 0.00 3.02
1143 1445 2.022129 GTCGGTGGTGTTGAGCTCG 61.022 63.158 9.64 0.00 0.00 5.03
1239 1541 4.338710 TTGGGCTGGCCGTACCAC 62.339 66.667 16.08 1.74 46.36 4.16
1508 1813 9.581289 TCTTCTACTAGTACGTAGGAGTAGTAT 57.419 37.037 27.34 5.77 41.74 2.12
1509 1814 8.982091 TCTTCTACTAGTACGTAGGAGTAGTA 57.018 38.462 27.34 21.81 41.74 1.82
1510 1815 7.777910 TCTCTTCTACTAGTACGTAGGAGTAGT 59.222 40.741 27.34 19.54 41.74 2.73
1512 1817 8.526667 TTCTCTTCTACTAGTACGTAGGAGTA 57.473 38.462 13.10 13.30 41.74 2.59
1513 1818 7.416964 TTCTCTTCTACTAGTACGTAGGAGT 57.583 40.000 13.10 12.58 41.74 3.85
1514 1819 7.763528 TGTTTCTCTTCTACTAGTACGTAGGAG 59.236 40.741 9.04 9.04 42.19 3.69
1516 1821 7.548780 ACTGTTTCTCTTCTACTAGTACGTAGG 59.451 40.741 0.00 0.00 37.92 3.18
1517 1822 8.477984 ACTGTTTCTCTTCTACTAGTACGTAG 57.522 38.462 0.00 2.46 38.54 3.51
1518 1823 8.839310 AACTGTTTCTCTTCTACTAGTACGTA 57.161 34.615 0.00 0.00 0.00 3.57
1519 1824 7.742556 AACTGTTTCTCTTCTACTAGTACGT 57.257 36.000 0.00 0.00 0.00 3.57
1520 1825 9.540431 GTAAACTGTTTCTCTTCTACTAGTACG 57.460 37.037 9.38 0.00 0.00 3.67
1523 1828 9.134055 ACTGTAAACTGTTTCTCTTCTACTAGT 57.866 33.333 9.38 0.00 0.00 2.57
1524 1829 9.968870 AACTGTAAACTGTTTCTCTTCTACTAG 57.031 33.333 9.38 4.23 34.97 2.57
1628 1937 2.400399 CGGAAAGCGACTGAACAACTA 58.600 47.619 0.00 0.00 0.00 2.24
1629 1938 1.217882 CGGAAAGCGACTGAACAACT 58.782 50.000 0.00 0.00 0.00 3.16
1630 1939 0.384353 GCGGAAAGCGACTGAACAAC 60.384 55.000 0.00 0.00 35.41 3.32
1631 1940 1.938861 GCGGAAAGCGACTGAACAA 59.061 52.632 0.00 0.00 35.41 2.83
1649 1958 1.941476 GCCGCACAGTAACGTTCTCG 61.941 60.000 2.82 2.64 43.34 4.04
1652 1961 2.468532 CGCCGCACAGTAACGTTC 59.531 61.111 2.82 0.00 0.00 3.95
1653 1962 3.039588 CCGCCGCACAGTAACGTT 61.040 61.111 5.88 5.88 0.00 3.99
1654 1963 3.909258 CTCCGCCGCACAGTAACGT 62.909 63.158 0.00 0.00 0.00 3.99
1655 1964 3.179265 CTCCGCCGCACAGTAACG 61.179 66.667 0.00 0.00 0.00 3.18
1656 1965 1.805945 CTCTCCGCCGCACAGTAAC 60.806 63.158 0.00 0.00 0.00 2.50
1693 2010 2.963854 CGAGCGCCAATCGATGCT 60.964 61.111 11.68 7.62 42.76 3.79
1883 2201 2.998480 TCGTTGAGGCCGGGCTTA 60.998 61.111 33.28 26.33 0.00 3.09
1976 2351 3.646162 TCTCAATGTTCCACCAGTACTGT 59.354 43.478 21.18 7.09 0.00 3.55
1983 2358 5.242838 GGTACAAATTCTCAATGTTCCACCA 59.757 40.000 0.00 0.00 35.37 4.17
1984 2359 5.242838 TGGTACAAATTCTCAATGTTCCACC 59.757 40.000 2.45 0.00 38.90 4.61
1988 2363 6.325919 TGGTGGTACAAATTCTCAATGTTC 57.674 37.500 0.00 0.00 44.16 3.18
2008 2389 5.884792 TCAACCAAGAATTTTGCAAAATGGT 59.115 32.000 32.23 30.73 38.50 3.55
2037 2418 4.530857 GCCCGGACGATGGACAGG 62.531 72.222 0.73 0.00 0.00 4.00
2077 2459 4.762016 GTGGATCCAATGCACCCA 57.238 55.556 18.20 0.00 44.65 4.51
2145 2577 1.683385 CAGAGGAGAGTGTGTGTGTGA 59.317 52.381 0.00 0.00 0.00 3.58
2295 2922 1.529865 CGCTATGTGATACGAGACGGA 59.470 52.381 0.00 0.00 0.00 4.69
2331 2959 3.985279 CGGCGGAATATTGTATCTTTCGA 59.015 43.478 0.00 0.00 0.00 3.71
2367 2995 6.454795 CATGGGTATTGTTAGTTTTGTTGCT 58.545 36.000 0.00 0.00 0.00 3.91
2438 3084 4.261114 GCCACCAGATCGTACTCTACTTAC 60.261 50.000 0.00 0.00 0.00 2.34
2456 3137 1.296727 GAGCACCGTATTTAGCCACC 58.703 55.000 0.00 0.00 0.00 4.61
2469 3150 4.000557 CACACGCACACGAGCACC 62.001 66.667 0.00 0.00 43.93 5.01
2470 3151 3.261951 ACACACGCACACGAGCAC 61.262 61.111 0.00 0.00 43.93 4.40
2471 3152 3.261216 CACACACGCACACGAGCA 61.261 61.111 0.00 0.00 43.93 4.26
2472 3153 3.261951 ACACACACGCACACGAGC 61.262 61.111 0.00 0.00 43.93 5.03
2473 3154 2.620459 CACACACACGCACACGAG 59.380 61.111 0.00 0.00 43.93 4.18
2474 3155 2.636778 ATCCACACACACGCACACGA 62.637 55.000 0.00 0.00 43.93 4.35
2476 3157 0.316937 CAATCCACACACACGCACAC 60.317 55.000 0.00 0.00 0.00 3.82
2479 3160 1.784036 CTGCAATCCACACACACGCA 61.784 55.000 0.00 0.00 0.00 5.24
2480 3161 1.081906 CTGCAATCCACACACACGC 60.082 57.895 0.00 0.00 0.00 5.34
2481 3162 1.575922 CCTGCAATCCACACACACG 59.424 57.895 0.00 0.00 0.00 4.49
2482 3163 0.823356 ACCCTGCAATCCACACACAC 60.823 55.000 0.00 0.00 0.00 3.82
2485 3166 1.902918 GCACCCTGCAATCCACACA 60.903 57.895 0.00 0.00 44.26 3.72
2486 3167 2.964978 GCACCCTGCAATCCACAC 59.035 61.111 0.00 0.00 44.26 3.82
2553 3246 1.802636 CGCGAAGTAGACGGGGTTA 59.197 57.895 0.00 0.00 39.38 2.85
2929 3660 1.009108 CAACGCAACGCAATGACCA 60.009 52.632 0.00 0.00 0.00 4.02
2931 3662 0.041312 ACTCAACGCAACGCAATGAC 60.041 50.000 0.00 0.00 0.00 3.06
2932 3663 0.234625 GACTCAACGCAACGCAATGA 59.765 50.000 0.00 0.00 0.00 2.57
2933 3664 1.054348 CGACTCAACGCAACGCAATG 61.054 55.000 0.00 0.00 0.00 2.82
2934 3665 1.204062 CGACTCAACGCAACGCAAT 59.796 52.632 0.00 0.00 0.00 3.56
2935 3666 1.697772 AACGACTCAACGCAACGCAA 61.698 50.000 0.00 0.00 36.70 4.85
2936 3667 2.168503 AACGACTCAACGCAACGCA 61.169 52.632 0.00 0.00 36.70 5.24
2937 3668 1.717728 CAACGACTCAACGCAACGC 60.718 57.895 0.00 0.00 36.70 4.84
2938 3669 0.847670 TACAACGACTCAACGCAACG 59.152 50.000 0.00 0.00 36.70 4.10
2939 3670 3.024313 GTTTACAACGACTCAACGCAAC 58.976 45.455 0.00 0.00 36.70 4.17
3020 3760 3.605749 AACTCCATGGACGCACCCG 62.606 63.158 11.44 1.32 38.00 5.28
3021 3761 2.040544 CAACTCCATGGACGCACCC 61.041 63.158 11.44 0.00 38.00 4.61
3022 3762 2.040544 CCAACTCCATGGACGCACC 61.041 63.158 11.44 0.00 43.54 5.01
3023 3763 2.040544 CCCAACTCCATGGACGCAC 61.041 63.158 11.44 0.00 43.54 5.34
3024 3764 2.350895 CCCAACTCCATGGACGCA 59.649 61.111 11.44 0.00 43.54 5.24
3025 3765 1.745489 GACCCAACTCCATGGACGC 60.745 63.158 11.44 0.00 43.54 5.19
3026 3766 0.108138 GAGACCCAACTCCATGGACG 60.108 60.000 11.44 9.93 43.54 4.79
3027 3767 0.108138 CGAGACCCAACTCCATGGAC 60.108 60.000 11.44 0.00 43.54 4.02
3028 3768 1.264749 CCGAGACCCAACTCCATGGA 61.265 60.000 15.27 15.27 43.54 3.41
3029 3769 1.221840 CCGAGACCCAACTCCATGG 59.778 63.158 4.97 4.97 40.35 3.66
3030 3770 0.108138 GACCGAGACCCAACTCCATG 60.108 60.000 0.00 0.00 33.83 3.66
3031 3771 0.252284 AGACCGAGACCCAACTCCAT 60.252 55.000 0.00 0.00 33.83 3.41
3032 3772 1.155390 AGACCGAGACCCAACTCCA 59.845 57.895 0.00 0.00 33.83 3.86
3033 3773 1.592223 CAGACCGAGACCCAACTCC 59.408 63.158 0.00 0.00 33.83 3.85
3034 3774 1.592223 CCAGACCGAGACCCAACTC 59.408 63.158 0.00 0.00 0.00 3.01
3035 3775 1.913762 CCCAGACCGAGACCCAACT 60.914 63.158 0.00 0.00 0.00 3.16
3036 3776 2.168666 GACCCAGACCGAGACCCAAC 62.169 65.000 0.00 0.00 0.00 3.77
3037 3777 1.911766 GACCCAGACCGAGACCCAA 60.912 63.158 0.00 0.00 0.00 4.12
3043 3783 0.466555 CCCTAGAGACCCAGACCGAG 60.467 65.000 0.00 0.00 0.00 4.63
3045 3785 1.455959 CCCCTAGAGACCCAGACCG 60.456 68.421 0.00 0.00 0.00 4.79
3064 3804 2.193447 CCAATACACGGACTCATCACG 58.807 52.381 0.00 0.00 0.00 4.35
3074 3814 1.468985 TCCCATTTGCCAATACACGG 58.531 50.000 0.00 0.00 0.00 4.94
3237 3979 3.211045 TGAAAGGAGGCACAAGTACAAC 58.789 45.455 0.00 0.00 0.00 3.32
3267 4015 5.105756 ACAAGTCACAAAAAGAAACCTGGAG 60.106 40.000 0.00 0.00 0.00 3.86
3270 4018 5.954335 AGACAAGTCACAAAAAGAAACCTG 58.046 37.500 2.72 0.00 0.00 4.00
3281 4029 9.836864 AATGCTTATATCATAGACAAGTCACAA 57.163 29.630 2.72 0.00 0.00 3.33
3296 4044 7.391554 TGCCCATACTGAAGAAATGCTTATATC 59.608 37.037 0.00 0.00 36.83 1.63
3299 4047 5.448654 TGCCCATACTGAAGAAATGCTTAT 58.551 37.500 0.00 0.00 36.83 1.73
3304 4052 6.698008 TTGTATGCCCATACTGAAGAAATG 57.302 37.500 16.73 0.00 43.04 2.32
3306 4054 7.395772 TGAAATTGTATGCCCATACTGAAGAAA 59.604 33.333 16.73 5.03 43.04 2.52
3307 4055 6.889177 TGAAATTGTATGCCCATACTGAAGAA 59.111 34.615 16.73 5.61 43.04 2.52
3308 4056 6.422333 TGAAATTGTATGCCCATACTGAAGA 58.578 36.000 16.73 0.00 43.04 2.87
3309 4057 6.698008 TGAAATTGTATGCCCATACTGAAG 57.302 37.500 16.73 0.00 43.04 3.02
3316 4113 8.316214 GGATATTTGATGAAATTGTATGCCCAT 58.684 33.333 0.00 0.00 33.63 4.00
3336 4133 8.260818 CGGAACTATGAGATTATGTGGGATATT 58.739 37.037 0.00 0.00 0.00 1.28
3337 4134 7.147655 CCGGAACTATGAGATTATGTGGGATAT 60.148 40.741 0.00 0.00 0.00 1.63
3338 4135 6.154534 CCGGAACTATGAGATTATGTGGGATA 59.845 42.308 0.00 0.00 0.00 2.59
3343 4140 5.221441 TGTCCCGGAACTATGAGATTATGTG 60.221 44.000 0.73 0.00 0.00 3.21
3382 4182 0.939106 CGCCAACTTTCCCTTTTGCG 60.939 55.000 0.00 0.00 0.00 4.85
3406 4213 4.021102 ACCGATCTGGACTTTCAAATGT 57.979 40.909 10.05 0.00 42.00 2.71
3489 4296 2.295885 CTTAGGCAAGGAATCTGCAGG 58.704 52.381 15.13 0.00 0.00 4.85
3582 4389 6.017275 GGAGTAGTAGTAGCTGCTTTATCGAA 60.017 42.308 10.41 0.00 31.67 3.71
3590 4397 3.181441 GGTAGGGAGTAGTAGTAGCTGCT 60.181 52.174 9.94 9.94 34.18 4.24
3591 4398 3.148412 GGTAGGGAGTAGTAGTAGCTGC 58.852 54.545 0.00 0.00 0.00 5.25
3592 4399 3.181456 ACGGTAGGGAGTAGTAGTAGCTG 60.181 52.174 0.00 0.00 0.00 4.24
3602 4409 8.636213 CATAAAGAAAATCTACGGTAGGGAGTA 58.364 37.037 14.82 0.00 0.00 2.59
3609 4416 7.066525 CCTTTGGCATAAAGAAAATCTACGGTA 59.933 37.037 12.65 0.00 0.00 4.02
3632 4439 1.077663 ACATCCAATTGGCAGGACCTT 59.922 47.619 20.33 0.00 40.22 3.50
3633 4440 0.706433 ACATCCAATTGGCAGGACCT 59.294 50.000 20.33 0.00 40.22 3.85
3634 4441 0.819582 CACATCCAATTGGCAGGACC 59.180 55.000 20.33 0.00 36.60 4.46
3644 4457 3.431922 CGGTACTCGTACACATCCAAT 57.568 47.619 9.22 0.00 37.78 3.16
3699 4512 0.034059 CTGTTCTGCTTGACCGGAGT 59.966 55.000 9.46 0.00 0.00 3.85
3916 4803 7.095607 CGTGTAGGATAAGAATAAGAACATGCC 60.096 40.741 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.