Multiple sequence alignment - TraesCS1B01G225900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G225900 chr1B 100.000 3314 0 0 1 3314 405712945 405709632 0.000000e+00 6120.0
1 TraesCS1B01G225900 chr1D 89.895 2375 110 43 422 2698 300709642 300707300 0.000000e+00 2937.0
2 TraesCS1B01G225900 chr1D 84.775 289 38 6 2844 3130 300704660 300704376 5.410000e-73 285.0
3 TraesCS1B01G225900 chr1D 90.500 200 16 1 215 411 417625823 417626022 9.120000e-66 261.0
4 TraesCS1B01G225900 chr1D 89.756 205 17 2 212 413 434527611 434527814 3.280000e-65 259.0
5 TraesCS1B01G225900 chr1A 91.781 2032 72 30 414 2398 375016971 375014988 0.000000e+00 2739.0
6 TraesCS1B01G225900 chr1A 81.635 746 95 28 2596 3314 375014732 375014002 6.160000e-162 580.0
7 TraesCS1B01G225900 chr1A 92.537 201 13 2 2412 2611 375014945 375014746 1.500000e-73 287.0
8 TraesCS1B01G225900 chr6B 89.450 218 18 3 202 415 571739914 571740130 1.520000e-68 270.0
9 TraesCS1B01G225900 chr7D 89.573 211 18 2 214 420 396856164 396855954 7.050000e-67 265.0
10 TraesCS1B01G225900 chr5D 90.547 201 16 2 213 410 108135051 108135251 2.540000e-66 263.0
11 TraesCS1B01G225900 chr5D 82.979 94 9 6 2867 2959 544792543 544792456 9.860000e-11 78.7
12 TraesCS1B01G225900 chr5B 90.050 201 17 1 216 413 30632706 30632906 1.180000e-64 257.0
13 TraesCS1B01G225900 chr5B 95.349 43 2 0 3 45 476925056 476925014 5.930000e-08 69.4
14 TraesCS1B01G225900 chr5B 93.182 44 3 0 3 46 669426224 669426267 7.680000e-07 65.8
15 TraesCS1B01G225900 chr5B 90.909 44 3 1 2 45 470408336 470408294 1.280000e-04 58.4
16 TraesCS1B01G225900 chr4D 90.050 201 16 3 216 413 297783272 297783073 1.180000e-64 257.0
17 TraesCS1B01G225900 chr4D 89.552 201 18 1 216 413 50974649 50974449 5.490000e-63 252.0
18 TraesCS1B01G225900 chr3B 88.018 217 20 5 216 427 696591039 696590824 5.490000e-63 252.0
19 TraesCS1B01G225900 chr3B 88.557 201 20 1 216 413 338601165 338601365 1.190000e-59 241.0
20 TraesCS1B01G225900 chr3B 87.619 210 21 4 210 414 618754746 618754955 4.270000e-59 239.0
21 TraesCS1B01G225900 chr7A 87.500 208 22 3 213 417 266990480 266990686 1.540000e-58 237.0
22 TraesCS1B01G225900 chr6A 84.466 103 14 2 2 103 564911746 564911847 2.100000e-17 100.0
23 TraesCS1B01G225900 chr6A 95.122 41 1 1 2 42 560079646 560079685 2.760000e-06 63.9
24 TraesCS1B01G225900 chr3D 97.872 47 0 1 2953 2999 568011212 568011167 2.740000e-11 80.5
25 TraesCS1B01G225900 chr3D 88.525 61 7 0 3 63 129516054 129515994 1.280000e-09 75.0
26 TraesCS1B01G225900 chr6D 95.556 45 2 0 3 47 460882157 460882113 4.590000e-09 73.1
27 TraesCS1B01G225900 chr5A 92.683 41 3 0 3 43 702853200 702853160 3.570000e-05 60.2
28 TraesCS1B01G225900 chr7B 78.889 90 15 4 2859 2946 49019808 49019895 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G225900 chr1B 405709632 405712945 3313 True 6120 6120 100.000 1 3314 1 chr1B.!!$R1 3313
1 TraesCS1B01G225900 chr1D 300704376 300709642 5266 True 1611 2937 87.335 422 3130 2 chr1D.!!$R1 2708
2 TraesCS1B01G225900 chr1A 375014002 375016971 2969 True 1202 2739 88.651 414 3314 3 chr1A.!!$R1 2900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1026 0.693049 CTGCCCCGCCTATAAATCCT 59.307 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2835 5490 0.036765 TACGAGCACGGCAATTTCCT 60.037 50.0 8.74 0.0 44.46 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.964370 TGTTTTTGATGACAAGTTTAGTGACG 59.036 34.615 0.00 0.00 37.32 4.35
26 27 4.725556 TTGATGACAAGTTTAGTGACGC 57.274 40.909 0.00 0.00 0.00 5.19
27 28 2.729360 TGATGACAAGTTTAGTGACGCG 59.271 45.455 3.53 3.53 0.00 6.01
28 29 2.495409 TGACAAGTTTAGTGACGCGA 57.505 45.000 15.93 0.00 0.00 5.87
29 30 2.390938 TGACAAGTTTAGTGACGCGAG 58.609 47.619 15.93 0.00 0.00 5.03
30 31 2.033675 TGACAAGTTTAGTGACGCGAGA 59.966 45.455 15.93 0.00 0.00 4.04
31 32 3.047796 GACAAGTTTAGTGACGCGAGAA 58.952 45.455 15.93 0.00 0.00 2.87
32 33 3.650139 ACAAGTTTAGTGACGCGAGAAT 58.350 40.909 15.93 0.00 0.00 2.40
33 34 3.428870 ACAAGTTTAGTGACGCGAGAATG 59.571 43.478 15.93 0.03 0.00 2.67
34 35 3.570926 AGTTTAGTGACGCGAGAATGA 57.429 42.857 15.93 0.00 0.00 2.57
35 36 3.243336 AGTTTAGTGACGCGAGAATGAC 58.757 45.455 15.93 2.96 0.00 3.06
36 37 2.984471 GTTTAGTGACGCGAGAATGACA 59.016 45.455 15.93 0.00 0.00 3.58
37 38 3.291809 TTAGTGACGCGAGAATGACAA 57.708 42.857 15.93 0.00 0.00 3.18
38 39 1.419374 AGTGACGCGAGAATGACAAC 58.581 50.000 15.93 0.00 0.00 3.32
39 40 1.000163 AGTGACGCGAGAATGACAACT 60.000 47.619 15.93 0.00 0.00 3.16
40 41 1.792949 GTGACGCGAGAATGACAACTT 59.207 47.619 15.93 0.00 0.00 2.66
41 42 2.221055 GTGACGCGAGAATGACAACTTT 59.779 45.455 15.93 0.00 0.00 2.66
42 43 3.427528 GTGACGCGAGAATGACAACTTTA 59.572 43.478 15.93 0.00 0.00 1.85
43 44 3.673338 TGACGCGAGAATGACAACTTTAG 59.327 43.478 15.93 0.00 0.00 1.85
44 45 3.650139 ACGCGAGAATGACAACTTTAGT 58.350 40.909 15.93 0.00 0.00 2.24
45 46 4.056050 ACGCGAGAATGACAACTTTAGTT 58.944 39.130 15.93 0.00 39.12 2.24
63 64 9.694137 ACTTTAGTTGATAAGTGTGACTACTTC 57.306 33.333 4.20 0.00 41.01 3.01
64 65 8.738199 TTTAGTTGATAAGTGTGACTACTTCG 57.262 34.615 4.20 0.00 41.01 3.79
65 66 6.328641 AGTTGATAAGTGTGACTACTTCGT 57.671 37.500 4.20 0.00 41.01 3.85
66 67 6.150318 AGTTGATAAGTGTGACTACTTCGTG 58.850 40.000 4.20 0.00 41.01 4.35
67 68 4.482386 TGATAAGTGTGACTACTTCGTGC 58.518 43.478 4.20 0.00 41.01 5.34
68 69 4.217767 TGATAAGTGTGACTACTTCGTGCT 59.782 41.667 4.20 0.00 41.01 4.40
69 70 3.454371 AAGTGTGACTACTTCGTGCTT 57.546 42.857 0.00 0.00 36.16 3.91
70 71 3.014604 AGTGTGACTACTTCGTGCTTC 57.985 47.619 0.00 0.00 0.00 3.86
71 72 2.361119 AGTGTGACTACTTCGTGCTTCA 59.639 45.455 0.00 0.00 0.00 3.02
72 73 2.726760 GTGTGACTACTTCGTGCTTCAG 59.273 50.000 0.00 0.00 0.00 3.02
73 74 2.361119 TGTGACTACTTCGTGCTTCAGT 59.639 45.455 0.00 0.00 0.00 3.41
74 75 3.566742 TGTGACTACTTCGTGCTTCAGTA 59.433 43.478 0.00 0.00 0.00 2.74
75 76 4.217767 TGTGACTACTTCGTGCTTCAGTAT 59.782 41.667 0.00 0.00 0.00 2.12
76 77 5.413523 TGTGACTACTTCGTGCTTCAGTATA 59.586 40.000 0.00 0.00 0.00 1.47
77 78 6.095021 TGTGACTACTTCGTGCTTCAGTATAT 59.905 38.462 0.00 0.00 0.00 0.86
78 79 6.973474 GTGACTACTTCGTGCTTCAGTATATT 59.027 38.462 0.00 0.00 0.00 1.28
79 80 7.488471 GTGACTACTTCGTGCTTCAGTATATTT 59.512 37.037 0.00 0.00 0.00 1.40
80 81 8.033038 TGACTACTTCGTGCTTCAGTATATTTT 58.967 33.333 0.00 0.00 0.00 1.82
81 82 8.773404 ACTACTTCGTGCTTCAGTATATTTTT 57.227 30.769 0.00 0.00 0.00 1.94
82 83 8.656849 ACTACTTCGTGCTTCAGTATATTTTTG 58.343 33.333 0.00 0.00 0.00 2.44
83 84 7.667043 ACTTCGTGCTTCAGTATATTTTTGA 57.333 32.000 0.00 0.00 0.00 2.69
84 85 7.519002 ACTTCGTGCTTCAGTATATTTTTGAC 58.481 34.615 0.00 0.00 0.00 3.18
85 86 7.172532 ACTTCGTGCTTCAGTATATTTTTGACA 59.827 33.333 0.00 0.00 0.00 3.58
86 87 7.060600 TCGTGCTTCAGTATATTTTTGACAG 57.939 36.000 0.00 0.00 0.00 3.51
87 88 6.871492 TCGTGCTTCAGTATATTTTTGACAGA 59.129 34.615 0.00 0.00 0.00 3.41
88 89 7.386573 TCGTGCTTCAGTATATTTTTGACAGAA 59.613 33.333 0.00 0.00 0.00 3.02
89 90 8.015087 CGTGCTTCAGTATATTTTTGACAGAAA 58.985 33.333 0.00 0.00 0.00 2.52
90 91 9.677567 GTGCTTCAGTATATTTTTGACAGAAAA 57.322 29.630 0.00 0.00 33.46 2.29
105 106 6.738352 GACAGAAAATTGTCATGTGTCAAC 57.262 37.500 10.25 0.00 45.32 3.18
106 107 6.455360 ACAGAAAATTGTCATGTGTCAACT 57.545 33.333 0.00 0.00 0.00 3.16
107 108 7.566760 ACAGAAAATTGTCATGTGTCAACTA 57.433 32.000 0.00 0.00 0.00 2.24
108 109 7.995289 ACAGAAAATTGTCATGTGTCAACTAA 58.005 30.769 0.00 0.00 0.00 2.24
109 110 7.915397 ACAGAAAATTGTCATGTGTCAACTAAC 59.085 33.333 0.00 0.00 0.00 2.34
110 111 8.131100 CAGAAAATTGTCATGTGTCAACTAACT 58.869 33.333 0.00 0.00 0.00 2.24
111 112 8.686334 AGAAAATTGTCATGTGTCAACTAACTT 58.314 29.630 0.00 0.00 0.00 2.66
112 113 8.633075 AAAATTGTCATGTGTCAACTAACTTG 57.367 30.769 0.00 0.00 0.00 3.16
113 114 6.942532 ATTGTCATGTGTCAACTAACTTGT 57.057 33.333 0.00 0.00 0.00 3.16
114 115 5.984233 TGTCATGTGTCAACTAACTTGTC 57.016 39.130 0.00 0.00 0.00 3.18
115 116 5.670485 TGTCATGTGTCAACTAACTTGTCT 58.330 37.500 0.00 0.00 0.00 3.41
116 117 6.112734 TGTCATGTGTCAACTAACTTGTCTT 58.887 36.000 0.00 0.00 0.00 3.01
117 118 6.597672 TGTCATGTGTCAACTAACTTGTCTTT 59.402 34.615 0.00 0.00 0.00 2.52
118 119 7.126398 GTCATGTGTCAACTAACTTGTCTTTC 58.874 38.462 0.00 0.00 0.00 2.62
119 120 7.011482 GTCATGTGTCAACTAACTTGTCTTTCT 59.989 37.037 0.00 0.00 0.00 2.52
120 121 7.552687 TCATGTGTCAACTAACTTGTCTTTCTT 59.447 33.333 0.00 0.00 0.00 2.52
121 122 7.072177 TGTGTCAACTAACTTGTCTTTCTTG 57.928 36.000 0.00 0.00 0.00 3.02
122 123 5.965918 GTGTCAACTAACTTGTCTTTCTTGC 59.034 40.000 0.00 0.00 0.00 4.01
123 124 5.065988 TGTCAACTAACTTGTCTTTCTTGCC 59.934 40.000 0.00 0.00 0.00 4.52
124 125 5.297029 GTCAACTAACTTGTCTTTCTTGCCT 59.703 40.000 0.00 0.00 0.00 4.75
125 126 5.527582 TCAACTAACTTGTCTTTCTTGCCTC 59.472 40.000 0.00 0.00 0.00 4.70
126 127 5.036117 ACTAACTTGTCTTTCTTGCCTCA 57.964 39.130 0.00 0.00 0.00 3.86
127 128 4.816925 ACTAACTTGTCTTTCTTGCCTCAC 59.183 41.667 0.00 0.00 0.00 3.51
128 129 3.281727 ACTTGTCTTTCTTGCCTCACA 57.718 42.857 0.00 0.00 0.00 3.58
129 130 3.620488 ACTTGTCTTTCTTGCCTCACAA 58.380 40.909 0.00 0.00 36.62 3.33
130 131 4.016444 ACTTGTCTTTCTTGCCTCACAAA 58.984 39.130 0.00 0.00 37.96 2.83
131 132 4.462483 ACTTGTCTTTCTTGCCTCACAAAA 59.538 37.500 0.00 0.00 37.96 2.44
132 133 4.370364 TGTCTTTCTTGCCTCACAAAAC 57.630 40.909 0.00 0.00 37.96 2.43
133 134 4.016444 TGTCTTTCTTGCCTCACAAAACT 58.984 39.130 0.00 0.00 37.96 2.66
134 135 4.462483 TGTCTTTCTTGCCTCACAAAACTT 59.538 37.500 0.00 0.00 37.96 2.66
135 136 4.800471 GTCTTTCTTGCCTCACAAAACTTG 59.200 41.667 0.00 0.00 37.96 3.16
136 137 2.869233 TCTTGCCTCACAAAACTTGC 57.131 45.000 0.00 0.00 37.96 4.01
137 138 1.408702 TCTTGCCTCACAAAACTTGCC 59.591 47.619 0.00 0.00 37.96 4.52
138 139 1.136695 CTTGCCTCACAAAACTTGCCA 59.863 47.619 0.00 0.00 37.96 4.92
139 140 1.412079 TGCCTCACAAAACTTGCCAT 58.588 45.000 0.00 0.00 0.00 4.40
140 141 2.591923 TGCCTCACAAAACTTGCCATA 58.408 42.857 0.00 0.00 0.00 2.74
141 142 2.961741 TGCCTCACAAAACTTGCCATAA 59.038 40.909 0.00 0.00 0.00 1.90
142 143 3.386078 TGCCTCACAAAACTTGCCATAAA 59.614 39.130 0.00 0.00 0.00 1.40
143 144 4.141846 TGCCTCACAAAACTTGCCATAAAA 60.142 37.500 0.00 0.00 0.00 1.52
144 145 4.813697 GCCTCACAAAACTTGCCATAAAAA 59.186 37.500 0.00 0.00 0.00 1.94
163 164 4.425577 AAAAGTCCGATTTGTCATGAGC 57.574 40.909 0.00 0.00 0.00 4.26
164 165 3.340814 AAGTCCGATTTGTCATGAGCT 57.659 42.857 0.00 0.00 0.00 4.09
165 166 2.898705 AGTCCGATTTGTCATGAGCTC 58.101 47.619 6.82 6.82 0.00 4.09
166 167 2.234661 AGTCCGATTTGTCATGAGCTCA 59.765 45.455 20.79 20.79 0.00 4.26
167 168 3.118482 AGTCCGATTTGTCATGAGCTCAT 60.118 43.478 23.75 23.75 36.96 2.90
168 169 4.100035 AGTCCGATTTGTCATGAGCTCATA 59.900 41.667 28.27 13.56 34.26 2.15
169 170 4.210120 GTCCGATTTGTCATGAGCTCATAC 59.790 45.833 28.27 23.45 34.26 2.39
170 171 4.100035 TCCGATTTGTCATGAGCTCATACT 59.900 41.667 28.27 7.80 34.26 2.12
171 172 5.301805 TCCGATTTGTCATGAGCTCATACTA 59.698 40.000 28.27 18.69 34.26 1.82
172 173 5.632764 CCGATTTGTCATGAGCTCATACTAG 59.367 44.000 28.27 16.23 34.26 2.57
173 174 6.442112 CGATTTGTCATGAGCTCATACTAGA 58.558 40.000 28.27 18.25 34.26 2.43
174 175 6.362016 CGATTTGTCATGAGCTCATACTAGAC 59.638 42.308 28.27 27.18 34.26 2.59
175 176 4.820284 TGTCATGAGCTCATACTAGACG 57.180 45.455 28.27 14.44 34.26 4.18
176 177 4.200092 TGTCATGAGCTCATACTAGACGT 58.800 43.478 28.27 1.43 34.26 4.34
177 178 4.640647 TGTCATGAGCTCATACTAGACGTT 59.359 41.667 28.27 0.61 34.26 3.99
178 179 5.820947 TGTCATGAGCTCATACTAGACGTTA 59.179 40.000 28.27 12.70 34.26 3.18
179 180 6.017852 TGTCATGAGCTCATACTAGACGTTAG 60.018 42.308 28.27 11.82 34.26 2.34
180 181 5.470437 TCATGAGCTCATACTAGACGTTAGG 59.530 44.000 28.27 11.62 34.26 2.69
181 182 4.778579 TGAGCTCATACTAGACGTTAGGT 58.221 43.478 13.74 0.00 0.00 3.08
182 183 5.922053 TGAGCTCATACTAGACGTTAGGTA 58.078 41.667 13.74 0.00 0.00 3.08
183 184 5.757320 TGAGCTCATACTAGACGTTAGGTAC 59.243 44.000 13.74 0.00 0.00 3.34
184 185 5.927819 AGCTCATACTAGACGTTAGGTACT 58.072 41.667 0.00 0.00 46.37 2.73
185 186 6.355747 AGCTCATACTAGACGTTAGGTACTT 58.644 40.000 0.00 0.00 41.75 2.24
186 187 6.482973 AGCTCATACTAGACGTTAGGTACTTC 59.517 42.308 0.00 0.00 41.75 3.01
187 188 6.482973 GCTCATACTAGACGTTAGGTACTTCT 59.517 42.308 0.00 0.00 41.75 2.85
188 189 7.307337 GCTCATACTAGACGTTAGGTACTTCTC 60.307 44.444 0.00 0.00 41.75 2.87
189 190 7.559486 TCATACTAGACGTTAGGTACTTCTCA 58.441 38.462 0.00 0.00 41.75 3.27
190 191 8.209584 TCATACTAGACGTTAGGTACTTCTCAT 58.790 37.037 0.00 0.00 41.75 2.90
191 192 8.838365 CATACTAGACGTTAGGTACTTCTCATT 58.162 37.037 0.00 0.00 41.75 2.57
192 193 7.319142 ACTAGACGTTAGGTACTTCTCATTC 57.681 40.000 0.00 0.00 41.75 2.67
193 194 5.579564 AGACGTTAGGTACTTCTCATTCC 57.420 43.478 0.00 0.00 41.75 3.01
194 195 4.401837 AGACGTTAGGTACTTCTCATTCCC 59.598 45.833 0.00 0.00 41.75 3.97
195 196 3.129988 ACGTTAGGTACTTCTCATTCCCG 59.870 47.826 0.00 0.00 41.75 5.14
196 197 3.129988 CGTTAGGTACTTCTCATTCCCGT 59.870 47.826 0.00 0.00 41.75 5.28
197 198 4.381292 CGTTAGGTACTTCTCATTCCCGTT 60.381 45.833 0.00 0.00 41.75 4.44
198 199 3.611766 AGGTACTTCTCATTCCCGTTG 57.388 47.619 0.00 0.00 27.25 4.10
199 200 3.170717 AGGTACTTCTCATTCCCGTTGA 58.829 45.455 0.00 0.00 27.25 3.18
200 201 3.775316 AGGTACTTCTCATTCCCGTTGAT 59.225 43.478 0.00 0.00 27.25 2.57
201 202 4.225267 AGGTACTTCTCATTCCCGTTGATT 59.775 41.667 0.00 0.00 27.25 2.57
202 203 4.941873 GGTACTTCTCATTCCCGTTGATTT 59.058 41.667 0.00 0.00 0.00 2.17
203 204 6.070424 AGGTACTTCTCATTCCCGTTGATTTA 60.070 38.462 0.00 0.00 27.25 1.40
204 205 6.766467 GGTACTTCTCATTCCCGTTGATTTAT 59.234 38.462 0.00 0.00 0.00 1.40
205 206 6.927294 ACTTCTCATTCCCGTTGATTTATC 57.073 37.500 0.00 0.00 0.00 1.75
206 207 6.653989 ACTTCTCATTCCCGTTGATTTATCT 58.346 36.000 0.00 0.00 0.00 1.98
207 208 7.112779 ACTTCTCATTCCCGTTGATTTATCTT 58.887 34.615 0.00 0.00 0.00 2.40
208 209 6.925610 TCTCATTCCCGTTGATTTATCTTG 57.074 37.500 0.00 0.00 0.00 3.02
209 210 5.822519 TCTCATTCCCGTTGATTTATCTTGG 59.177 40.000 0.00 0.00 0.00 3.61
210 211 5.750524 TCATTCCCGTTGATTTATCTTGGA 58.249 37.500 0.00 0.00 0.00 3.53
211 212 6.364701 TCATTCCCGTTGATTTATCTTGGAT 58.635 36.000 0.00 0.00 0.00 3.41
212 213 6.262944 TCATTCCCGTTGATTTATCTTGGATG 59.737 38.462 0.00 0.00 0.00 3.51
213 214 3.882888 TCCCGTTGATTTATCTTGGATGC 59.117 43.478 0.00 0.00 0.00 3.91
214 215 3.631686 CCCGTTGATTTATCTTGGATGCA 59.368 43.478 0.00 0.00 0.00 3.96
215 216 4.279169 CCCGTTGATTTATCTTGGATGCAT 59.721 41.667 0.00 0.00 0.00 3.96
216 217 5.473162 CCCGTTGATTTATCTTGGATGCATA 59.527 40.000 0.00 0.00 0.00 3.14
217 218 6.016360 CCCGTTGATTTATCTTGGATGCATAA 60.016 38.462 0.00 0.00 0.00 1.90
218 219 7.080099 CCGTTGATTTATCTTGGATGCATAAG 58.920 38.462 0.00 0.19 0.00 1.73
219 220 7.080099 CGTTGATTTATCTTGGATGCATAAGG 58.920 38.462 0.00 0.00 0.00 2.69
220 221 6.579666 TGATTTATCTTGGATGCATAAGGC 57.420 37.500 0.00 0.00 45.13 4.35
221 222 5.477984 TGATTTATCTTGGATGCATAAGGCC 59.522 40.000 0.00 0.00 43.89 5.19
222 223 4.729552 TTATCTTGGATGCATAAGGCCT 57.270 40.909 0.00 0.00 43.89 5.19
223 224 3.607490 ATCTTGGATGCATAAGGCCTT 57.393 42.857 24.18 24.18 43.89 4.35
224 225 2.658285 TCTTGGATGCATAAGGCCTTG 58.342 47.619 28.77 14.55 43.89 3.61
225 226 2.025037 TCTTGGATGCATAAGGCCTTGT 60.025 45.455 28.77 19.61 43.89 3.16
226 227 3.201930 TCTTGGATGCATAAGGCCTTGTA 59.798 43.478 28.77 13.26 43.89 2.41
227 228 2.930950 TGGATGCATAAGGCCTTGTAC 58.069 47.619 28.77 16.94 43.89 2.90
228 229 2.240921 TGGATGCATAAGGCCTTGTACA 59.759 45.455 28.77 22.34 43.89 2.90
229 230 3.287222 GGATGCATAAGGCCTTGTACAA 58.713 45.455 28.77 7.95 43.89 2.41
230 231 3.891366 GGATGCATAAGGCCTTGTACAAT 59.109 43.478 28.77 14.68 43.89 2.71
231 232 4.261741 GGATGCATAAGGCCTTGTACAATG 60.262 45.833 28.77 22.30 43.89 2.82
232 233 3.023119 TGCATAAGGCCTTGTACAATGG 58.977 45.455 28.77 13.26 43.89 3.16
233 234 3.287222 GCATAAGGCCTTGTACAATGGA 58.713 45.455 28.77 4.58 36.11 3.41
234 235 3.699038 GCATAAGGCCTTGTACAATGGAA 59.301 43.478 28.77 3.74 36.11 3.53
235 236 4.202050 GCATAAGGCCTTGTACAATGGAAG 60.202 45.833 28.77 7.14 36.11 3.46
236 237 3.806949 AAGGCCTTGTACAATGGAAGA 57.193 42.857 19.73 0.00 0.00 2.87
237 238 4.322057 AAGGCCTTGTACAATGGAAGAT 57.678 40.909 19.73 0.00 0.00 2.40
238 239 3.624777 AGGCCTTGTACAATGGAAGATG 58.375 45.455 21.28 4.72 0.00 2.90
239 240 2.099756 GGCCTTGTACAATGGAAGATGC 59.900 50.000 21.28 10.00 0.00 3.91
240 241 3.019564 GCCTTGTACAATGGAAGATGCT 58.980 45.455 21.28 0.00 0.00 3.79
241 242 3.445096 GCCTTGTACAATGGAAGATGCTT 59.555 43.478 21.28 0.00 0.00 3.91
242 243 4.640201 GCCTTGTACAATGGAAGATGCTTA 59.360 41.667 21.28 0.00 0.00 3.09
243 244 5.220931 GCCTTGTACAATGGAAGATGCTTAG 60.221 44.000 21.28 2.32 0.00 2.18
244 245 5.297776 CCTTGTACAATGGAAGATGCTTAGG 59.702 44.000 9.13 0.00 0.00 2.69
245 246 4.780815 TGTACAATGGAAGATGCTTAGGG 58.219 43.478 0.00 0.00 0.00 3.53
246 247 4.473196 TGTACAATGGAAGATGCTTAGGGA 59.527 41.667 0.00 0.00 0.00 4.20
247 248 4.162040 ACAATGGAAGATGCTTAGGGAG 57.838 45.455 0.00 0.00 0.00 4.30
248 249 3.117738 ACAATGGAAGATGCTTAGGGAGG 60.118 47.826 0.00 0.00 0.00 4.30
249 250 2.270434 TGGAAGATGCTTAGGGAGGT 57.730 50.000 0.00 0.00 0.00 3.85
250 251 1.839994 TGGAAGATGCTTAGGGAGGTG 59.160 52.381 0.00 0.00 0.00 4.00
251 252 1.475930 GGAAGATGCTTAGGGAGGTGC 60.476 57.143 0.00 0.00 0.00 5.01
252 253 1.488393 GAAGATGCTTAGGGAGGTGCT 59.512 52.381 0.00 0.00 0.00 4.40
253 254 1.589414 AGATGCTTAGGGAGGTGCTT 58.411 50.000 0.00 0.00 0.00 3.91
254 255 2.764269 AGATGCTTAGGGAGGTGCTTA 58.236 47.619 0.00 0.00 0.00 3.09
255 256 2.703007 AGATGCTTAGGGAGGTGCTTAG 59.297 50.000 0.00 0.00 0.00 2.18
256 257 2.247699 TGCTTAGGGAGGTGCTTAGA 57.752 50.000 0.00 0.00 0.00 2.10
257 258 2.546899 TGCTTAGGGAGGTGCTTAGAA 58.453 47.619 0.00 0.00 0.00 2.10
258 259 2.910319 TGCTTAGGGAGGTGCTTAGAAA 59.090 45.455 0.00 0.00 0.00 2.52
259 260 3.329520 TGCTTAGGGAGGTGCTTAGAAAA 59.670 43.478 0.00 0.00 0.00 2.29
260 261 4.202524 TGCTTAGGGAGGTGCTTAGAAAAA 60.203 41.667 0.00 0.00 0.00 1.94
261 262 4.950475 GCTTAGGGAGGTGCTTAGAAAAAT 59.050 41.667 0.00 0.00 0.00 1.82
262 263 6.120220 GCTTAGGGAGGTGCTTAGAAAAATA 58.880 40.000 0.00 0.00 0.00 1.40
263 264 6.602009 GCTTAGGGAGGTGCTTAGAAAAATAA 59.398 38.462 0.00 0.00 0.00 1.40
264 265 7.122204 GCTTAGGGAGGTGCTTAGAAAAATAAA 59.878 37.037 0.00 0.00 0.00 1.40
265 266 6.835819 AGGGAGGTGCTTAGAAAAATAAAC 57.164 37.500 0.00 0.00 0.00 2.01
266 267 5.715279 AGGGAGGTGCTTAGAAAAATAAACC 59.285 40.000 0.00 0.00 0.00 3.27
267 268 5.392703 GGGAGGTGCTTAGAAAAATAAACCG 60.393 44.000 0.00 0.00 0.00 4.44
268 269 5.413523 GGAGGTGCTTAGAAAAATAAACCGA 59.586 40.000 0.00 0.00 0.00 4.69
269 270 6.072342 GGAGGTGCTTAGAAAAATAAACCGAA 60.072 38.462 0.00 0.00 0.00 4.30
270 271 7.362660 GGAGGTGCTTAGAAAAATAAACCGAAT 60.363 37.037 0.00 0.00 0.00 3.34
271 272 7.892609 AGGTGCTTAGAAAAATAAACCGAATT 58.107 30.769 0.00 0.00 0.00 2.17
272 273 8.364894 AGGTGCTTAGAAAAATAAACCGAATTT 58.635 29.630 0.00 0.00 0.00 1.82
273 274 8.984764 GGTGCTTAGAAAAATAAACCGAATTTT 58.015 29.630 0.00 0.00 37.98 1.82
284 285 7.940178 ATAAACCGAATTTTTCTGAAACACC 57.060 32.000 1.58 0.00 0.00 4.16
285 286 3.959943 ACCGAATTTTTCTGAAACACCG 58.040 40.909 1.58 4.49 0.00 4.94
286 287 3.628487 ACCGAATTTTTCTGAAACACCGA 59.372 39.130 1.58 0.00 0.00 4.69
287 288 4.277423 ACCGAATTTTTCTGAAACACCGAT 59.723 37.500 1.58 0.00 0.00 4.18
288 289 4.616802 CCGAATTTTTCTGAAACACCGATG 59.383 41.667 1.58 0.00 0.00 3.84
289 290 4.088496 CGAATTTTTCTGAAACACCGATGC 59.912 41.667 1.58 0.00 0.00 3.91
290 291 4.853924 ATTTTTCTGAAACACCGATGCT 57.146 36.364 1.58 0.00 0.00 3.79
291 292 4.647424 TTTTTCTGAAACACCGATGCTT 57.353 36.364 1.58 0.00 0.00 3.91
292 293 5.759506 TTTTTCTGAAACACCGATGCTTA 57.240 34.783 1.58 0.00 0.00 3.09
293 294 5.957842 TTTTCTGAAACACCGATGCTTAT 57.042 34.783 1.58 0.00 0.00 1.73
294 295 5.957842 TTTCTGAAACACCGATGCTTATT 57.042 34.783 0.00 0.00 0.00 1.40
295 296 5.957842 TTCTGAAACACCGATGCTTATTT 57.042 34.783 0.00 0.00 0.00 1.40
296 297 5.545658 TCTGAAACACCGATGCTTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
297 298 5.245531 TCTGAAACACCGATGCTTATTTCT 58.754 37.500 0.00 0.00 0.00 2.52
298 299 6.403049 TCTGAAACACCGATGCTTATTTCTA 58.597 36.000 0.00 0.00 0.00 2.10
299 300 7.047891 TCTGAAACACCGATGCTTATTTCTAT 58.952 34.615 0.00 0.00 0.00 1.98
300 301 8.201464 TCTGAAACACCGATGCTTATTTCTATA 58.799 33.333 0.00 0.00 0.00 1.31
301 302 8.725405 TGAAACACCGATGCTTATTTCTATAA 57.275 30.769 0.00 0.00 0.00 0.98
302 303 8.826710 TGAAACACCGATGCTTATTTCTATAAG 58.173 33.333 0.00 0.00 44.00 1.73
303 304 8.958119 AAACACCGATGCTTATTTCTATAAGA 57.042 30.769 8.66 0.00 43.93 2.10
304 305 8.594881 AACACCGATGCTTATTTCTATAAGAG 57.405 34.615 8.66 0.00 43.93 2.85
305 306 7.952671 ACACCGATGCTTATTTCTATAAGAGA 58.047 34.615 8.66 0.00 43.93 3.10
306 307 8.085296 ACACCGATGCTTATTTCTATAAGAGAG 58.915 37.037 8.66 0.00 43.93 3.20
307 308 7.543868 CACCGATGCTTATTTCTATAAGAGAGG 59.456 40.741 8.66 7.78 43.93 3.69
308 309 6.533367 CCGATGCTTATTTCTATAAGAGAGGC 59.467 42.308 8.66 0.00 43.93 4.70
309 310 6.252441 CGATGCTTATTTCTATAAGAGAGGCG 59.748 42.308 8.66 0.00 43.93 5.52
310 311 5.230942 TGCTTATTTCTATAAGAGAGGCGC 58.769 41.667 0.00 0.00 43.93 6.53
311 312 5.011125 TGCTTATTTCTATAAGAGAGGCGCT 59.989 40.000 7.64 0.00 43.93 5.92
312 313 5.929415 GCTTATTTCTATAAGAGAGGCGCTT 59.071 40.000 7.64 0.00 43.93 4.68
313 314 7.091443 GCTTATTTCTATAAGAGAGGCGCTTA 58.909 38.462 7.64 0.00 43.93 3.09
314 315 7.274686 GCTTATTTCTATAAGAGAGGCGCTTAG 59.725 40.741 7.64 0.00 43.93 2.18
315 316 6.658188 ATTTCTATAAGAGAGGCGCTTAGT 57.342 37.500 7.64 0.00 34.93 2.24
316 317 6.466885 TTTCTATAAGAGAGGCGCTTAGTT 57.533 37.500 7.64 0.00 34.93 2.24
317 318 7.578310 TTTCTATAAGAGAGGCGCTTAGTTA 57.422 36.000 7.64 0.00 34.93 2.24
318 319 7.578310 TTCTATAAGAGAGGCGCTTAGTTAA 57.422 36.000 7.64 0.00 34.93 2.01
319 320 7.204496 TCTATAAGAGAGGCGCTTAGTTAAG 57.796 40.000 7.64 0.00 30.20 1.85
320 321 7.734950 TTCTATAAGAGAGGCGCTTAGTTAAGC 60.735 40.741 7.64 12.72 44.08 3.09
334 335 7.024340 CTTAGTTAAGCGTCTATCCTGTACA 57.976 40.000 0.00 0.00 0.00 2.90
335 336 5.909621 AGTTAAGCGTCTATCCTGTACAA 57.090 39.130 0.00 0.00 0.00 2.41
336 337 6.276832 AGTTAAGCGTCTATCCTGTACAAA 57.723 37.500 0.00 0.00 0.00 2.83
337 338 6.875076 AGTTAAGCGTCTATCCTGTACAAAT 58.125 36.000 0.00 0.00 0.00 2.32
338 339 8.004087 AGTTAAGCGTCTATCCTGTACAAATA 57.996 34.615 0.00 0.00 0.00 1.40
339 340 8.472413 AGTTAAGCGTCTATCCTGTACAAATAA 58.528 33.333 0.00 0.00 0.00 1.40
340 341 8.753175 GTTAAGCGTCTATCCTGTACAAATAAG 58.247 37.037 0.00 0.00 0.00 1.73
341 342 5.290386 AGCGTCTATCCTGTACAAATAAGC 58.710 41.667 0.00 4.79 0.00 3.09
342 343 5.047847 GCGTCTATCCTGTACAAATAAGCA 58.952 41.667 0.00 0.00 0.00 3.91
343 344 5.050972 GCGTCTATCCTGTACAAATAAGCAC 60.051 44.000 0.00 0.00 0.00 4.40
344 345 5.462398 CGTCTATCCTGTACAAATAAGCACC 59.538 44.000 0.00 0.00 0.00 5.01
345 346 5.462398 GTCTATCCTGTACAAATAAGCACCG 59.538 44.000 0.00 0.00 0.00 4.94
346 347 2.980568 TCCTGTACAAATAAGCACCGG 58.019 47.619 0.00 0.00 0.00 5.28
347 348 2.303600 TCCTGTACAAATAAGCACCGGT 59.696 45.455 0.00 0.00 0.00 5.28
348 349 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
379 380 7.800155 AAAAGCCTGATTTATCTCTCTAAGC 57.200 36.000 0.00 0.00 0.00 3.09
380 381 6.491714 AAGCCTGATTTATCTCTCTAAGCA 57.508 37.500 0.00 0.00 0.00 3.91
381 382 5.852827 AGCCTGATTTATCTCTCTAAGCAC 58.147 41.667 0.00 0.00 0.00 4.40
382 383 4.994217 GCCTGATTTATCTCTCTAAGCACC 59.006 45.833 0.00 0.00 0.00 5.01
383 384 5.546526 CCTGATTTATCTCTCTAAGCACCC 58.453 45.833 0.00 0.00 0.00 4.61
384 385 5.512232 CCTGATTTATCTCTCTAAGCACCCC 60.512 48.000 0.00 0.00 0.00 4.95
385 386 5.219739 TGATTTATCTCTCTAAGCACCCCT 58.780 41.667 0.00 0.00 0.00 4.79
386 387 6.382087 TGATTTATCTCTCTAAGCACCCCTA 58.618 40.000 0.00 0.00 0.00 3.53
387 388 6.844388 TGATTTATCTCTCTAAGCACCCCTAA 59.156 38.462 0.00 0.00 0.00 2.69
388 389 6.732896 TTTATCTCTCTAAGCACCCCTAAG 57.267 41.667 0.00 0.00 0.00 2.18
389 390 3.759815 TCTCTCTAAGCACCCCTAAGT 57.240 47.619 0.00 0.00 0.00 2.24
390 391 4.875578 TCTCTCTAAGCACCCCTAAGTA 57.124 45.455 0.00 0.00 0.00 2.24
391 392 5.405063 TCTCTCTAAGCACCCCTAAGTAT 57.595 43.478 0.00 0.00 0.00 2.12
392 393 5.386924 TCTCTCTAAGCACCCCTAAGTATC 58.613 45.833 0.00 0.00 0.00 2.24
393 394 5.134679 TCTCTCTAAGCACCCCTAAGTATCT 59.865 44.000 0.00 0.00 0.00 1.98
394 395 5.778542 TCTCTAAGCACCCCTAAGTATCTT 58.221 41.667 0.00 0.00 0.00 2.40
395 396 5.598830 TCTCTAAGCACCCCTAAGTATCTTG 59.401 44.000 0.00 0.00 0.00 3.02
396 397 3.283259 AAGCACCCCTAAGTATCTTGC 57.717 47.619 0.00 0.00 0.00 4.01
397 398 2.196595 AGCACCCCTAAGTATCTTGCA 58.803 47.619 0.00 0.00 0.00 4.08
398 399 2.780010 AGCACCCCTAAGTATCTTGCAT 59.220 45.455 0.00 0.00 0.00 3.96
399 400 3.203040 AGCACCCCTAAGTATCTTGCATT 59.797 43.478 0.00 0.00 0.00 3.56
400 401 3.316308 GCACCCCTAAGTATCTTGCATTG 59.684 47.826 0.00 0.00 0.00 2.82
401 402 4.526970 CACCCCTAAGTATCTTGCATTGT 58.473 43.478 0.00 0.00 0.00 2.71
402 403 5.680619 CACCCCTAAGTATCTTGCATTGTA 58.319 41.667 0.00 0.00 0.00 2.41
403 404 5.527582 CACCCCTAAGTATCTTGCATTGTAC 59.472 44.000 0.00 0.00 0.00 2.90
404 405 5.190925 ACCCCTAAGTATCTTGCATTGTACA 59.809 40.000 0.00 0.00 0.00 2.90
405 406 6.119536 CCCCTAAGTATCTTGCATTGTACAA 58.880 40.000 11.41 11.41 0.00 2.41
406 407 6.260936 CCCCTAAGTATCTTGCATTGTACAAG 59.739 42.308 14.65 7.46 44.76 3.16
407 408 6.260936 CCCTAAGTATCTTGCATTGTACAAGG 59.739 42.308 15.70 15.70 43.79 3.61
408 409 5.567138 AAGTATCTTGCATTGTACAAGGC 57.433 39.130 32.34 32.34 46.98 4.35
409 410 3.947834 AGTATCTTGCATTGTACAAGGCC 59.052 43.478 34.56 21.40 46.35 5.19
410 411 2.584835 TCTTGCATTGTACAAGGCCT 57.415 45.000 34.56 0.00 46.35 5.19
411 412 3.712016 TCTTGCATTGTACAAGGCCTA 57.288 42.857 34.56 23.82 46.35 3.93
412 413 4.027674 TCTTGCATTGTACAAGGCCTAA 57.972 40.909 34.56 24.29 46.35 2.69
433 434 4.697756 CATGACGGTGGCGGTGGT 62.698 66.667 0.00 0.00 0.00 4.16
434 435 2.998480 ATGACGGTGGCGGTGGTA 60.998 61.111 0.00 0.00 0.00 3.25
439 440 3.315949 GGTGGCGGTGGTAGTGGA 61.316 66.667 0.00 0.00 0.00 4.02
448 449 2.264794 GGTAGTGGACTGGTGGCG 59.735 66.667 0.00 0.00 0.00 5.69
489 490 1.372087 CCAGCGAAGGAGGATGCAAC 61.372 60.000 0.00 0.00 0.00 4.17
496 497 1.115467 AGGAGGATGCAACGGAGTAG 58.885 55.000 0.00 0.00 45.00 2.57
502 503 0.905357 ATGCAACGGAGTAGGCTCTT 59.095 50.000 0.00 0.00 45.00 2.85
575 599 2.910479 TGCGTCGACCCAGTCAGT 60.910 61.111 10.58 0.00 32.09 3.41
613 637 2.620108 GCTGGAAAGAGAAGCCCAGAAT 60.620 50.000 11.07 0.00 46.84 2.40
627 651 3.875369 GCCCAGAATGAGGAAGAACATGT 60.875 47.826 0.00 0.00 39.69 3.21
650 674 3.067461 GTCAGAATCAGGATAGCGTGAGT 59.933 47.826 9.44 6.43 41.64 3.41
692 723 2.783135 TCATCTGACTTTCTGCAACCC 58.217 47.619 0.00 0.00 0.00 4.11
980 1012 2.524148 AGTTTTGCCCACTGCCCC 60.524 61.111 0.00 0.00 40.16 5.80
993 1026 0.693049 CTGCCCCGCCTATAAATCCT 59.307 55.000 0.00 0.00 0.00 3.24
1013 1046 4.778143 GGCAATGCCGACCCGTCT 62.778 66.667 9.14 0.00 39.62 4.18
1078 1112 1.667724 GCTACAGTGCAAGTATGGCTG 59.332 52.381 0.00 0.00 34.64 4.85
1087 1121 2.398588 CAAGTATGGCTGGGGTCTCTA 58.601 52.381 0.00 0.00 0.00 2.43
1118 1152 1.082038 CACTCGTCGCACTCGTCTT 60.082 57.895 0.00 0.00 36.96 3.01
1131 1165 2.617308 ACTCGTCTTCGTTCTTCTCACA 59.383 45.455 0.00 0.00 38.33 3.58
1179 1213 2.606519 TACACCGGCTCCTTGGCT 60.607 61.111 0.00 0.00 39.32 4.75
1308 1350 4.671549 CGGCGGCGCATGCTATTG 62.672 66.667 34.36 8.13 42.25 1.90
1318 1360 2.708514 GCATGCTATTGCGTTACACAG 58.291 47.619 11.37 0.00 43.34 3.66
1322 1364 1.463056 GCTATTGCGTTACACAGTGCA 59.537 47.619 0.00 0.00 35.15 4.57
1324 1366 3.907927 TTGCGTTACACAGTGCAAC 57.092 47.368 6.58 6.58 41.95 4.17
1328 1370 1.596954 GCGTTACACAGTGCAACCTTG 60.597 52.381 10.55 0.00 37.80 3.61
1334 1376 1.812571 CACAGTGCAACCTTGGGATAC 59.187 52.381 0.00 0.00 37.80 2.24
1354 1397 7.811236 GGGATACTAATAACAATGTCGATCGAA 59.189 37.037 21.31 10.78 0.00 3.71
1476 1519 4.886121 GCGCCTGCTACCGGGTAC 62.886 72.222 6.32 1.55 39.86 3.34
1485 1531 0.096976 CTACCGGGTACGTACGTGTG 59.903 60.000 30.25 15.96 38.78 3.82
1489 1535 0.098552 CGGGTACGTACGTGTGCATA 59.901 55.000 30.25 6.69 34.81 3.14
1582 1634 0.039437 CGTAGCTCCGTTCACACTGT 60.039 55.000 0.00 0.00 0.00 3.55
1583 1635 1.198408 CGTAGCTCCGTTCACACTGTA 59.802 52.381 0.00 0.00 0.00 2.74
1584 1636 2.351060 CGTAGCTCCGTTCACACTGTAA 60.351 50.000 0.00 0.00 0.00 2.41
1585 1637 3.672511 CGTAGCTCCGTTCACACTGTAAT 60.673 47.826 0.00 0.00 0.00 1.89
1586 1638 2.688507 AGCTCCGTTCACACTGTAATG 58.311 47.619 0.00 0.00 0.00 1.90
1587 1639 2.299013 AGCTCCGTTCACACTGTAATGA 59.701 45.455 0.00 0.00 0.00 2.57
1588 1640 3.064207 GCTCCGTTCACACTGTAATGAA 58.936 45.455 3.30 3.30 32.44 2.57
1589 1641 3.496884 GCTCCGTTCACACTGTAATGAAA 59.503 43.478 7.91 0.00 36.62 2.69
1590 1642 4.154195 GCTCCGTTCACACTGTAATGAAAT 59.846 41.667 7.91 0.00 36.62 2.17
1592 1644 6.455646 GCTCCGTTCACACTGTAATGAAATAG 60.456 42.308 7.91 7.31 36.62 1.73
1611 1663 2.703798 TACGTGGGTAGCAGTCCGC 61.704 63.158 0.00 0.00 42.91 5.54
1625 1701 3.794717 CAGTCCGCTACTCTGTAGTCTA 58.205 50.000 6.60 0.00 35.76 2.59
1635 1711 5.652994 ACTCTGTAGTCTAGGCTCAAAAG 57.347 43.478 0.00 0.00 0.00 2.27
1637 1713 5.955355 ACTCTGTAGTCTAGGCTCAAAAGAT 59.045 40.000 0.00 0.00 0.00 2.40
1642 1718 4.450053 AGTCTAGGCTCAAAAGATCATGC 58.550 43.478 0.00 0.00 0.00 4.06
1758 1840 2.494471 CACCGACATGAACTACTACCCA 59.506 50.000 0.00 0.00 0.00 4.51
1761 1843 3.181489 CCGACATGAACTACTACCCAGTC 60.181 52.174 0.00 0.00 36.14 3.51
1919 2005 3.305813 CCACAGTAGTACTCCAAGCGAAA 60.306 47.826 0.00 0.00 0.00 3.46
1921 2007 3.573110 ACAGTAGTACTCCAAGCGAAACT 59.427 43.478 0.00 0.00 0.00 2.66
1922 2008 4.167268 CAGTAGTACTCCAAGCGAAACTC 58.833 47.826 0.00 0.00 0.00 3.01
1923 2009 2.349297 AGTACTCCAAGCGAAACTCG 57.651 50.000 0.00 0.00 43.89 4.18
1924 2010 1.612463 AGTACTCCAAGCGAAACTCGT 59.388 47.619 0.00 0.00 42.81 4.18
1925 2011 1.984297 GTACTCCAAGCGAAACTCGTC 59.016 52.381 0.00 0.00 42.81 4.20
1926 2012 0.319641 ACTCCAAGCGAAACTCGTCC 60.320 55.000 0.00 0.00 42.81 4.79
1927 2013 1.344942 CTCCAAGCGAAACTCGTCCG 61.345 60.000 0.00 0.00 42.81 4.79
1928 2014 2.380410 CCAAGCGAAACTCGTCCGG 61.380 63.158 0.00 0.00 42.81 5.14
1929 2015 2.737376 AAGCGAAACTCGTCCGGC 60.737 61.111 0.00 0.00 42.81 6.13
1932 2018 2.732094 CGAAACTCGTCCGGCGTT 60.732 61.111 16.00 5.51 42.13 4.84
1933 2019 1.442520 CGAAACTCGTCCGGCGTTA 60.443 57.895 16.00 0.00 42.13 3.18
1934 2020 0.799534 CGAAACTCGTCCGGCGTTAT 60.800 55.000 16.00 4.03 42.13 1.89
1935 2021 0.919300 GAAACTCGTCCGGCGTTATC 59.081 55.000 16.00 8.49 42.13 1.75
1994 2080 0.260816 AGGGTGCCATGCAATCATCT 59.739 50.000 0.00 0.00 41.47 2.90
1998 2084 0.259356 TGCCATGCAATCATCTGGGA 59.741 50.000 4.03 0.00 34.76 4.37
2098 2184 2.347114 CCGTGGTGCAGATGGACA 59.653 61.111 6.81 0.00 38.19 4.02
2184 2270 3.746949 CTGGCGGATGGACTCCAGC 62.747 68.421 4.60 4.60 45.24 4.85
2340 2426 2.209838 GAGCTTCCGATCGATCAACA 57.790 50.000 24.40 5.10 0.00 3.33
2348 2434 4.039703 TCCGATCGATCAACAAATACGTC 58.960 43.478 24.40 0.00 0.00 4.34
2445 2561 1.002857 AAGGAGGCTTTAGCATGGGT 58.997 50.000 3.88 0.00 44.36 4.51
2548 2667 5.578336 CACAAGATTCACAGCTCGAAATCTA 59.422 40.000 12.16 0.00 0.00 1.98
2551 2670 7.010923 ACAAGATTCACAGCTCGAAATCTAATC 59.989 37.037 12.16 3.89 0.00 1.75
2590 2709 8.556589 TCAGGTTTATCCATATACATTATGGGG 58.443 37.037 10.84 0.00 43.50 4.96
2627 2775 3.969312 TCAGTCAATCAGATGCTCCCATA 59.031 43.478 0.00 0.00 0.00 2.74
2634 2782 7.014038 GTCAATCAGATGCTCCCATAATTTCTT 59.986 37.037 0.00 0.00 0.00 2.52
2638 2786 8.821686 TCAGATGCTCCCATAATTTCTTAAAA 57.178 30.769 0.00 0.00 0.00 1.52
2641 2789 9.425248 AGATGCTCCCATAATTTCTTAAAATCA 57.575 29.630 0.00 0.00 33.93 2.57
2712 2872 3.135530 ACAGAGGCTCATTCATTAGGGAC 59.864 47.826 18.26 0.00 0.00 4.46
2717 2877 1.068588 CTCATTCATTAGGGACGCCGA 59.931 52.381 0.00 0.00 0.00 5.54
2729 2889 1.949465 GACGCCGATAAGTCCCATTT 58.051 50.000 0.00 0.00 0.00 2.32
2731 2891 1.208535 ACGCCGATAAGTCCCATTTGA 59.791 47.619 0.00 0.00 0.00 2.69
2732 2892 2.285083 CGCCGATAAGTCCCATTTGAA 58.715 47.619 0.00 0.00 0.00 2.69
2734 2894 3.013921 GCCGATAAGTCCCATTTGAACA 58.986 45.455 0.00 0.00 0.00 3.18
2735 2895 3.632145 GCCGATAAGTCCCATTTGAACAT 59.368 43.478 0.00 0.00 0.00 2.71
2736 2896 4.097892 GCCGATAAGTCCCATTTGAACATT 59.902 41.667 0.00 0.00 0.00 2.71
2775 5430 3.574614 GTGGCAATTTACGTTTGCTGAT 58.425 40.909 19.65 0.00 46.74 2.90
2776 5431 3.608073 GTGGCAATTTACGTTTGCTGATC 59.392 43.478 19.65 6.87 46.74 2.92
2780 5435 5.094812 GCAATTTACGTTTGCTGATCATGA 58.905 37.500 14.63 0.00 44.71 3.07
2781 5436 5.572511 GCAATTTACGTTTGCTGATCATGAA 59.427 36.000 14.63 0.00 44.71 2.57
2792 5447 8.482429 GTTTGCTGATCATGAAAAGTTTAGTTG 58.518 33.333 0.00 0.00 0.00 3.16
2798 5453 6.463995 TCATGAAAAGTTTAGTTGGCAAGT 57.536 33.333 12.91 12.91 0.00 3.16
2815 5470 4.915704 GCAAGTATGGCAAATTTACGCTA 58.084 39.130 0.00 0.00 32.79 4.26
2816 5471 5.336744 GCAAGTATGGCAAATTTACGCTAA 58.663 37.500 0.00 0.00 32.79 3.09
2817 5472 5.977129 GCAAGTATGGCAAATTTACGCTAAT 59.023 36.000 0.00 0.00 32.79 1.73
2818 5473 6.475402 GCAAGTATGGCAAATTTACGCTAATT 59.525 34.615 0.00 0.00 32.79 1.40
2819 5474 7.646130 GCAAGTATGGCAAATTTACGCTAATTA 59.354 33.333 0.00 0.00 32.79 1.40
2820 5475 9.509855 CAAGTATGGCAAATTTACGCTAATTAA 57.490 29.630 0.00 0.00 0.00 1.40
2855 5510 0.373716 GGAAATTGCCGTGCTCGTAG 59.626 55.000 7.47 0.00 35.01 3.51
2890 5545 3.128589 TCCTCGCATCAACTAAAATTGCC 59.871 43.478 0.00 0.00 0.00 4.52
2932 5587 0.958876 GGGCCAAAATCCGAACGTCT 60.959 55.000 4.39 0.00 0.00 4.18
2999 5654 1.768275 TCAAGACACAAGGCCAAGAGA 59.232 47.619 5.01 0.00 0.00 3.10
3016 5672 4.766404 AGAGACCAAAATTACAAAGCCG 57.234 40.909 0.00 0.00 0.00 5.52
3022 5678 4.279922 ACCAAAATTACAAAGCCGCTACTT 59.720 37.500 0.00 0.00 0.00 2.24
3025 5681 5.959618 AAATTACAAAGCCGCTACTTTCT 57.040 34.783 0.00 0.00 37.78 2.52
3026 5682 5.547181 AATTACAAAGCCGCTACTTTCTC 57.453 39.130 0.00 0.00 37.78 2.87
3035 5691 2.161609 CCGCTACTTTCTCGGCAAAATT 59.838 45.455 0.00 0.00 36.53 1.82
3037 5693 4.142773 CCGCTACTTTCTCGGCAAAATTTA 60.143 41.667 0.00 0.00 36.53 1.40
3048 5705 6.885376 TCTCGGCAAAATTTAACCCAAGTATA 59.115 34.615 0.00 0.00 0.00 1.47
3052 5709 6.921307 GGCAAAATTTAACCCAAGTATATCGG 59.079 38.462 0.00 0.00 0.00 4.18
3058 5715 1.335145 CCCAAGTATATCGGACCCGT 58.665 55.000 8.42 0.00 40.74 5.28
3065 5722 1.640917 ATATCGGACCCGTAATGGCT 58.359 50.000 8.42 0.00 40.74 4.75
3102 5759 8.633561 CCTCATTATTATTTTTGGAAGACCCTC 58.366 37.037 0.00 0.00 35.38 4.30
3109 5766 0.974383 TTGGAAGACCCTCGAACTCC 59.026 55.000 0.00 0.00 35.38 3.85
3125 5782 3.061848 CCGCTCGCCCCAAATTGT 61.062 61.111 0.00 0.00 0.00 2.71
3130 5787 1.379527 CTCGCCCCAAATTGTCCTAC 58.620 55.000 0.00 0.00 0.00 3.18
3143 5800 9.226606 CCAAATTGTCCTACTCTAACATAAACA 57.773 33.333 0.00 0.00 0.00 2.83
3155 5812 8.957466 ACTCTAACATAAACAAAGATAAAGGCC 58.043 33.333 0.00 0.00 0.00 5.19
3157 5814 9.303116 TCTAACATAAACAAAGATAAAGGCCAA 57.697 29.630 5.01 0.00 0.00 4.52
3163 5820 5.405935 ACAAAGATAAAGGCCAAATGGTC 57.594 39.130 5.01 0.00 40.99 4.02
3171 5828 1.580994 GGCCAAATGGTCTACCCCCT 61.581 60.000 0.00 0.00 36.72 4.79
3174 5831 2.735151 CCAAATGGTCTACCCCCTTTC 58.265 52.381 0.00 0.00 34.29 2.62
3175 5832 2.042433 CCAAATGGTCTACCCCCTTTCA 59.958 50.000 0.00 0.00 34.29 2.69
3182 5840 1.354368 TCTACCCCCTTTCAAAGCCAG 59.646 52.381 0.00 0.00 0.00 4.85
3199 5857 1.839994 CCAGTCAAAGCCCTAGATGGA 59.160 52.381 0.00 0.00 38.35 3.41
3201 5859 1.488393 AGTCAAAGCCCTAGATGGAGC 59.512 52.381 0.00 0.00 38.35 4.70
3220 5878 4.512914 GGGCCCATGACCAGCCTC 62.513 72.222 19.95 3.60 46.31 4.70
3222 5880 2.124403 GCCCATGACCAGCCTCTG 60.124 66.667 0.00 0.00 0.00 3.35
3224 5882 1.077930 CCCATGACCAGCCTCTGTG 60.078 63.158 0.00 0.00 0.00 3.66
3225 5883 1.681666 CCATGACCAGCCTCTGTGT 59.318 57.895 0.00 0.00 0.00 3.72
3227 5885 0.392193 CATGACCAGCCTCTGTGTCC 60.392 60.000 0.00 0.00 33.74 4.02
3228 5886 1.892819 ATGACCAGCCTCTGTGTCCG 61.893 60.000 10.63 0.00 33.74 4.79
3237 5895 1.891060 CTCTGTGTCCGAAACTGCGC 61.891 60.000 0.00 0.00 0.00 6.09
3242 5900 4.735132 TCCGAAACTGCGCGAGGG 62.735 66.667 12.10 0.14 0.00 4.30
3246 5904 3.296709 GAAACTGCGCGAGGGAGGA 62.297 63.158 12.10 0.00 38.63 3.71
3254 5912 0.249238 CGCGAGGGAGGATCAGAAAG 60.249 60.000 0.00 0.00 36.25 2.62
3263 5921 1.988107 AGGATCAGAAAGCCTCCAACA 59.012 47.619 0.00 0.00 0.00 3.33
3264 5922 2.087646 GGATCAGAAAGCCTCCAACAC 58.912 52.381 0.00 0.00 0.00 3.32
3266 5924 1.140312 TCAGAAAGCCTCCAACACCT 58.860 50.000 0.00 0.00 0.00 4.00
3267 5925 1.202806 TCAGAAAGCCTCCAACACCTG 60.203 52.381 0.00 0.00 0.00 4.00
3268 5926 0.538287 AGAAAGCCTCCAACACCTGC 60.538 55.000 0.00 0.00 0.00 4.85
3269 5927 0.823356 GAAAGCCTCCAACACCTGCA 60.823 55.000 0.00 0.00 0.00 4.41
3270 5928 0.178953 AAAGCCTCCAACACCTGCAT 60.179 50.000 0.00 0.00 0.00 3.96
3271 5929 0.610232 AAGCCTCCAACACCTGCATC 60.610 55.000 0.00 0.00 0.00 3.91
3283 5941 2.040813 CACCTGCATCTGGCCCTAATAT 59.959 50.000 0.00 0.00 43.89 1.28
3294 5952 5.534654 TCTGGCCCTAATATATGCACAAAAC 59.465 40.000 0.00 0.00 0.00 2.43
3296 5954 4.517453 GGCCCTAATATATGCACAAAACGA 59.483 41.667 0.00 0.00 0.00 3.85
3298 5956 6.373216 GGCCCTAATATATGCACAAAACGATA 59.627 38.462 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.964370 CGTCACTAAACTTGTCATCAAAAACA 59.036 34.615 0.00 0.00 32.87 2.83
1 2 6.075572 GCGTCACTAAACTTGTCATCAAAAAC 60.076 38.462 0.00 0.00 32.87 2.43
2 3 5.968848 GCGTCACTAAACTTGTCATCAAAAA 59.031 36.000 0.00 0.00 32.87 1.94
3 4 5.507077 GCGTCACTAAACTTGTCATCAAAA 58.493 37.500 0.00 0.00 32.87 2.44
4 5 4.318475 CGCGTCACTAAACTTGTCATCAAA 60.318 41.667 0.00 0.00 32.87 2.69
5 6 3.183574 CGCGTCACTAAACTTGTCATCAA 59.816 43.478 0.00 0.00 0.00 2.57
6 7 2.729360 CGCGTCACTAAACTTGTCATCA 59.271 45.455 0.00 0.00 0.00 3.07
7 8 2.984471 TCGCGTCACTAAACTTGTCATC 59.016 45.455 5.77 0.00 0.00 2.92
8 9 2.987149 CTCGCGTCACTAAACTTGTCAT 59.013 45.455 5.77 0.00 0.00 3.06
9 10 2.033675 TCTCGCGTCACTAAACTTGTCA 59.966 45.455 5.77 0.00 0.00 3.58
10 11 2.658285 TCTCGCGTCACTAAACTTGTC 58.342 47.619 5.77 0.00 0.00 3.18
11 12 2.787601 TCTCGCGTCACTAAACTTGT 57.212 45.000 5.77 0.00 0.00 3.16
12 13 3.673338 TCATTCTCGCGTCACTAAACTTG 59.327 43.478 5.77 0.00 0.00 3.16
13 14 3.673809 GTCATTCTCGCGTCACTAAACTT 59.326 43.478 5.77 0.00 0.00 2.66
14 15 3.243336 GTCATTCTCGCGTCACTAAACT 58.757 45.455 5.77 0.00 0.00 2.66
15 16 2.984471 TGTCATTCTCGCGTCACTAAAC 59.016 45.455 5.77 0.00 0.00 2.01
16 17 3.291809 TGTCATTCTCGCGTCACTAAA 57.708 42.857 5.77 0.00 0.00 1.85
17 18 2.984471 GTTGTCATTCTCGCGTCACTAA 59.016 45.455 5.77 0.00 0.00 2.24
18 19 2.228103 AGTTGTCATTCTCGCGTCACTA 59.772 45.455 5.77 0.00 0.00 2.74
19 20 1.000163 AGTTGTCATTCTCGCGTCACT 60.000 47.619 5.77 0.00 0.00 3.41
20 21 1.419374 AGTTGTCATTCTCGCGTCAC 58.581 50.000 5.77 0.00 0.00 3.67
21 22 2.148916 AAGTTGTCATTCTCGCGTCA 57.851 45.000 5.77 0.00 0.00 4.35
22 23 3.673809 ACTAAAGTTGTCATTCTCGCGTC 59.326 43.478 5.77 0.00 0.00 5.19
23 24 3.650139 ACTAAAGTTGTCATTCTCGCGT 58.350 40.909 5.77 0.00 0.00 6.01
24 25 4.647291 AACTAAAGTTGTCATTCTCGCG 57.353 40.909 0.00 0.00 36.80 5.87
37 38 9.694137 GAAGTAGTCACACTTATCAACTAAAGT 57.306 33.333 0.00 0.00 38.86 2.66
38 39 8.851416 CGAAGTAGTCACACTTATCAACTAAAG 58.149 37.037 0.00 0.00 38.86 1.85
39 40 8.355169 ACGAAGTAGTCACACTTATCAACTAAA 58.645 33.333 0.00 0.00 41.94 1.85
40 41 7.806487 CACGAAGTAGTCACACTTATCAACTAA 59.194 37.037 0.00 0.00 41.61 2.24
41 42 7.303261 CACGAAGTAGTCACACTTATCAACTA 58.697 38.462 0.00 0.00 41.61 2.24
42 43 6.150318 CACGAAGTAGTCACACTTATCAACT 58.850 40.000 0.00 0.00 41.61 3.16
43 44 5.164080 GCACGAAGTAGTCACACTTATCAAC 60.164 44.000 0.00 0.00 41.61 3.18
44 45 4.921515 GCACGAAGTAGTCACACTTATCAA 59.078 41.667 0.00 0.00 41.61 2.57
45 46 4.217767 AGCACGAAGTAGTCACACTTATCA 59.782 41.667 0.00 0.00 41.61 2.15
46 47 4.734917 AGCACGAAGTAGTCACACTTATC 58.265 43.478 0.00 0.00 41.61 1.75
47 48 4.785511 AGCACGAAGTAGTCACACTTAT 57.214 40.909 0.00 0.00 41.61 1.73
48 49 4.037089 TGAAGCACGAAGTAGTCACACTTA 59.963 41.667 0.00 0.00 41.61 2.24
49 50 3.181479 TGAAGCACGAAGTAGTCACACTT 60.181 43.478 0.00 0.00 41.61 3.16
50 51 2.361119 TGAAGCACGAAGTAGTCACACT 59.639 45.455 0.00 0.00 41.61 3.55
51 52 2.726760 CTGAAGCACGAAGTAGTCACAC 59.273 50.000 0.00 0.00 41.61 3.82
52 53 2.361119 ACTGAAGCACGAAGTAGTCACA 59.639 45.455 0.00 0.00 41.61 3.58
53 54 3.014604 ACTGAAGCACGAAGTAGTCAC 57.985 47.619 0.00 0.00 41.61 3.67
54 55 6.694877 ATATACTGAAGCACGAAGTAGTCA 57.305 37.500 0.00 0.00 41.61 3.41
55 56 7.988904 AAATATACTGAAGCACGAAGTAGTC 57.011 36.000 0.00 0.00 41.61 2.59
56 57 8.656849 CAAAAATATACTGAAGCACGAAGTAGT 58.343 33.333 0.00 0.00 41.61 2.73
57 58 8.869897 TCAAAAATATACTGAAGCACGAAGTAG 58.130 33.333 0.00 0.00 41.61 2.57
58 59 8.653338 GTCAAAAATATACTGAAGCACGAAGTA 58.347 33.333 0.00 0.00 41.61 2.24
60 61 7.518161 TGTCAAAAATATACTGAAGCACGAAG 58.482 34.615 0.00 0.00 0.00 3.79
61 62 7.386573 TCTGTCAAAAATATACTGAAGCACGAA 59.613 33.333 0.00 0.00 0.00 3.85
62 63 6.871492 TCTGTCAAAAATATACTGAAGCACGA 59.129 34.615 0.00 0.00 0.00 4.35
63 64 7.060600 TCTGTCAAAAATATACTGAAGCACG 57.939 36.000 0.00 0.00 0.00 5.34
64 65 9.677567 TTTTCTGTCAAAAATATACTGAAGCAC 57.322 29.630 0.00 0.00 34.14 4.40
82 83 6.498304 AGTTGACACATGACAATTTTCTGTC 58.502 36.000 0.00 0.00 45.01 3.51
83 84 6.455360 AGTTGACACATGACAATTTTCTGT 57.545 33.333 0.00 0.00 32.94 3.41
84 85 8.131100 AGTTAGTTGACACATGACAATTTTCTG 58.869 33.333 0.00 0.00 32.94 3.02
85 86 8.225603 AGTTAGTTGACACATGACAATTTTCT 57.774 30.769 0.00 0.01 32.94 2.52
86 87 8.745837 CAAGTTAGTTGACACATGACAATTTTC 58.254 33.333 0.00 0.00 38.60 2.29
87 88 8.250332 ACAAGTTAGTTGACACATGACAATTTT 58.750 29.630 6.80 0.00 38.60 1.82
88 89 7.771183 ACAAGTTAGTTGACACATGACAATTT 58.229 30.769 6.80 0.00 38.60 1.82
89 90 7.283127 AGACAAGTTAGTTGACACATGACAATT 59.717 33.333 6.80 2.84 38.60 2.32
90 91 6.767902 AGACAAGTTAGTTGACACATGACAAT 59.232 34.615 6.80 0.00 38.60 2.71
91 92 6.112734 AGACAAGTTAGTTGACACATGACAA 58.887 36.000 6.80 0.00 38.60 3.18
92 93 5.670485 AGACAAGTTAGTTGACACATGACA 58.330 37.500 6.80 0.00 38.60 3.58
93 94 6.604735 AAGACAAGTTAGTTGACACATGAC 57.395 37.500 6.80 0.00 38.60 3.06
94 95 7.047891 AGAAAGACAAGTTAGTTGACACATGA 58.952 34.615 6.80 0.00 38.60 3.07
95 96 7.251704 AGAAAGACAAGTTAGTTGACACATG 57.748 36.000 6.80 0.00 38.60 3.21
96 97 7.679638 GCAAGAAAGACAAGTTAGTTGACACAT 60.680 37.037 6.80 0.00 38.60 3.21
97 98 6.403200 GCAAGAAAGACAAGTTAGTTGACACA 60.403 38.462 6.80 0.00 38.60 3.72
98 99 5.965918 GCAAGAAAGACAAGTTAGTTGACAC 59.034 40.000 6.80 0.00 38.60 3.67
99 100 5.065988 GGCAAGAAAGACAAGTTAGTTGACA 59.934 40.000 6.80 0.00 38.60 3.58
100 101 5.297029 AGGCAAGAAAGACAAGTTAGTTGAC 59.703 40.000 6.80 0.27 38.60 3.18
101 102 5.437060 AGGCAAGAAAGACAAGTTAGTTGA 58.563 37.500 6.80 0.00 38.60 3.18
102 103 5.296780 TGAGGCAAGAAAGACAAGTTAGTTG 59.703 40.000 0.00 0.00 42.48 3.16
103 104 5.297029 GTGAGGCAAGAAAGACAAGTTAGTT 59.703 40.000 0.00 0.00 0.00 2.24
104 105 4.816925 GTGAGGCAAGAAAGACAAGTTAGT 59.183 41.667 0.00 0.00 0.00 2.24
105 106 4.816385 TGTGAGGCAAGAAAGACAAGTTAG 59.184 41.667 0.00 0.00 0.00 2.34
106 107 4.776349 TGTGAGGCAAGAAAGACAAGTTA 58.224 39.130 0.00 0.00 0.00 2.24
107 108 3.620488 TGTGAGGCAAGAAAGACAAGTT 58.380 40.909 0.00 0.00 0.00 2.66
108 109 3.281727 TGTGAGGCAAGAAAGACAAGT 57.718 42.857 0.00 0.00 0.00 3.16
109 110 4.637483 TTTGTGAGGCAAGAAAGACAAG 57.363 40.909 0.00 0.00 38.47 3.16
110 111 4.462483 AGTTTTGTGAGGCAAGAAAGACAA 59.538 37.500 0.00 0.00 38.47 3.18
111 112 4.016444 AGTTTTGTGAGGCAAGAAAGACA 58.984 39.130 0.00 0.00 38.47 3.41
112 113 4.639135 AGTTTTGTGAGGCAAGAAAGAC 57.361 40.909 0.00 0.00 38.47 3.01
113 114 4.677779 GCAAGTTTTGTGAGGCAAGAAAGA 60.678 41.667 0.00 0.00 38.47 2.52
114 115 3.553105 GCAAGTTTTGTGAGGCAAGAAAG 59.447 43.478 0.00 0.00 38.47 2.62
115 116 3.520569 GCAAGTTTTGTGAGGCAAGAAA 58.479 40.909 0.00 0.00 38.47 2.52
116 117 2.159114 GGCAAGTTTTGTGAGGCAAGAA 60.159 45.455 0.00 0.00 38.47 2.52
117 118 1.408702 GGCAAGTTTTGTGAGGCAAGA 59.591 47.619 0.00 0.00 38.47 3.02
118 119 1.136695 TGGCAAGTTTTGTGAGGCAAG 59.863 47.619 0.00 0.00 38.47 4.01
119 120 1.189752 TGGCAAGTTTTGTGAGGCAA 58.810 45.000 0.00 0.00 34.87 4.52
120 121 1.412079 ATGGCAAGTTTTGTGAGGCA 58.588 45.000 0.00 0.00 39.14 4.75
121 122 3.658757 TTATGGCAAGTTTTGTGAGGC 57.341 42.857 0.00 0.00 0.00 4.70
141 142 4.520492 AGCTCATGACAAATCGGACTTTTT 59.480 37.500 0.00 0.00 0.00 1.94
142 143 4.074970 AGCTCATGACAAATCGGACTTTT 58.925 39.130 0.00 0.00 0.00 2.27
143 144 3.679389 AGCTCATGACAAATCGGACTTT 58.321 40.909 0.00 0.00 0.00 2.66
144 145 3.265791 GAGCTCATGACAAATCGGACTT 58.734 45.455 9.40 0.00 0.00 3.01
145 146 2.234661 TGAGCTCATGACAAATCGGACT 59.765 45.455 13.74 0.00 0.00 3.85
146 147 2.621338 TGAGCTCATGACAAATCGGAC 58.379 47.619 13.74 0.00 0.00 4.79
147 148 3.548745 ATGAGCTCATGACAAATCGGA 57.451 42.857 28.21 0.00 34.83 4.55
148 149 4.375272 AGTATGAGCTCATGACAAATCGG 58.625 43.478 34.48 0.00 37.15 4.18
149 150 6.362016 GTCTAGTATGAGCTCATGACAAATCG 59.638 42.308 34.48 13.37 37.15 3.34
150 151 6.362016 CGTCTAGTATGAGCTCATGACAAATC 59.638 42.308 34.48 18.88 37.15 2.17
151 152 6.183360 ACGTCTAGTATGAGCTCATGACAAAT 60.183 38.462 34.48 18.81 37.15 2.32
152 153 5.125578 ACGTCTAGTATGAGCTCATGACAAA 59.874 40.000 34.48 15.16 37.15 2.83
153 154 4.640647 ACGTCTAGTATGAGCTCATGACAA 59.359 41.667 34.48 15.54 37.15 3.18
154 155 4.200092 ACGTCTAGTATGAGCTCATGACA 58.800 43.478 34.48 19.26 37.15 3.58
155 156 4.822036 ACGTCTAGTATGAGCTCATGAC 57.178 45.455 34.48 28.90 37.15 3.06
156 157 5.470437 CCTAACGTCTAGTATGAGCTCATGA 59.530 44.000 34.48 21.96 37.15 3.07
157 158 5.239744 ACCTAACGTCTAGTATGAGCTCATG 59.760 44.000 34.48 20.13 37.15 3.07
158 159 5.378332 ACCTAACGTCTAGTATGAGCTCAT 58.622 41.667 30.85 30.85 40.22 2.90
159 160 4.778579 ACCTAACGTCTAGTATGAGCTCA 58.221 43.478 20.79 20.79 0.00 4.26
160 161 5.990996 AGTACCTAACGTCTAGTATGAGCTC 59.009 44.000 6.82 6.82 0.00 4.09
161 162 5.927819 AGTACCTAACGTCTAGTATGAGCT 58.072 41.667 0.00 0.00 0.00 4.09
162 163 6.482973 AGAAGTACCTAACGTCTAGTATGAGC 59.517 42.308 0.00 0.00 43.97 4.26
163 164 7.710044 TGAGAAGTACCTAACGTCTAGTATGAG 59.290 40.741 0.00 0.00 45.50 2.90
164 165 7.559486 TGAGAAGTACCTAACGTCTAGTATGA 58.441 38.462 0.00 0.00 45.50 2.15
165 166 7.783090 TGAGAAGTACCTAACGTCTAGTATG 57.217 40.000 0.00 0.00 45.50 2.39
166 167 8.977267 AATGAGAAGTACCTAACGTCTAGTAT 57.023 34.615 0.00 0.00 45.50 2.12
167 168 7.497249 GGAATGAGAAGTACCTAACGTCTAGTA 59.503 40.741 0.00 0.00 45.50 1.82
168 169 6.318396 GGAATGAGAAGTACCTAACGTCTAGT 59.682 42.308 0.00 0.00 45.50 2.57
169 170 6.238703 GGGAATGAGAAGTACCTAACGTCTAG 60.239 46.154 0.00 0.00 45.50 2.43
170 171 5.591877 GGGAATGAGAAGTACCTAACGTCTA 59.408 44.000 0.00 0.00 45.50 2.59
172 173 4.680702 GGGAATGAGAAGTACCTAACGTC 58.319 47.826 0.00 0.00 36.91 4.34
173 174 3.129988 CGGGAATGAGAAGTACCTAACGT 59.870 47.826 0.00 0.00 0.00 3.99
174 175 3.129988 ACGGGAATGAGAAGTACCTAACG 59.870 47.826 0.00 0.00 0.00 3.18
175 176 4.732672 ACGGGAATGAGAAGTACCTAAC 57.267 45.455 0.00 0.00 0.00 2.34
176 177 4.773674 TCAACGGGAATGAGAAGTACCTAA 59.226 41.667 0.00 0.00 0.00 2.69
177 178 4.346730 TCAACGGGAATGAGAAGTACCTA 58.653 43.478 0.00 0.00 0.00 3.08
178 179 3.170717 TCAACGGGAATGAGAAGTACCT 58.829 45.455 0.00 0.00 0.00 3.08
179 180 3.604875 TCAACGGGAATGAGAAGTACC 57.395 47.619 0.00 0.00 0.00 3.34
180 181 7.711339 AGATAAATCAACGGGAATGAGAAGTAC 59.289 37.037 0.00 0.00 0.00 2.73
181 182 7.792032 AGATAAATCAACGGGAATGAGAAGTA 58.208 34.615 0.00 0.00 0.00 2.24
182 183 6.653989 AGATAAATCAACGGGAATGAGAAGT 58.346 36.000 0.00 0.00 0.00 3.01
183 184 7.412853 CAAGATAAATCAACGGGAATGAGAAG 58.587 38.462 0.00 0.00 0.00 2.85
184 185 6.318648 CCAAGATAAATCAACGGGAATGAGAA 59.681 38.462 0.00 0.00 0.00 2.87
185 186 5.822519 CCAAGATAAATCAACGGGAATGAGA 59.177 40.000 0.00 0.00 0.00 3.27
186 187 5.822519 TCCAAGATAAATCAACGGGAATGAG 59.177 40.000 0.00 0.00 0.00 2.90
187 188 5.750524 TCCAAGATAAATCAACGGGAATGA 58.249 37.500 0.00 0.00 0.00 2.57
188 189 6.441274 CATCCAAGATAAATCAACGGGAATG 58.559 40.000 0.00 0.00 0.00 2.67
189 190 5.010012 GCATCCAAGATAAATCAACGGGAAT 59.990 40.000 0.00 0.00 0.00 3.01
190 191 4.338118 GCATCCAAGATAAATCAACGGGAA 59.662 41.667 0.00 0.00 0.00 3.97
191 192 3.882888 GCATCCAAGATAAATCAACGGGA 59.117 43.478 0.00 0.00 0.00 5.14
192 193 3.631686 TGCATCCAAGATAAATCAACGGG 59.368 43.478 0.00 0.00 0.00 5.28
193 194 4.898829 TGCATCCAAGATAAATCAACGG 57.101 40.909 0.00 0.00 0.00 4.44
194 195 7.080099 CCTTATGCATCCAAGATAAATCAACG 58.920 38.462 0.19 0.00 0.00 4.10
195 196 6.865205 GCCTTATGCATCCAAGATAAATCAAC 59.135 38.462 0.19 0.00 40.77 3.18
196 197 6.015180 GGCCTTATGCATCCAAGATAAATCAA 60.015 38.462 0.19 0.00 43.89 2.57
197 198 5.477984 GGCCTTATGCATCCAAGATAAATCA 59.522 40.000 0.19 0.00 43.89 2.57
198 199 5.713861 AGGCCTTATGCATCCAAGATAAATC 59.286 40.000 0.19 0.00 43.89 2.17
199 200 5.648247 AGGCCTTATGCATCCAAGATAAAT 58.352 37.500 0.19 0.00 43.89 1.40
200 201 5.065613 AGGCCTTATGCATCCAAGATAAA 57.934 39.130 0.19 0.00 43.89 1.40
201 202 4.729552 AGGCCTTATGCATCCAAGATAA 57.270 40.909 0.19 0.00 43.89 1.75
202 203 4.141181 ACAAGGCCTTATGCATCCAAGATA 60.141 41.667 20.00 0.00 43.89 1.98
203 204 3.228453 CAAGGCCTTATGCATCCAAGAT 58.772 45.455 20.00 0.00 43.89 2.40
204 205 2.025037 ACAAGGCCTTATGCATCCAAGA 60.025 45.455 20.00 0.00 43.89 3.02
205 206 2.381911 ACAAGGCCTTATGCATCCAAG 58.618 47.619 20.00 3.96 43.89 3.61
206 207 2.530460 ACAAGGCCTTATGCATCCAA 57.470 45.000 20.00 0.00 43.89 3.53
207 208 2.240921 TGTACAAGGCCTTATGCATCCA 59.759 45.455 20.00 5.43 43.89 3.41
208 209 2.930950 TGTACAAGGCCTTATGCATCC 58.069 47.619 20.00 0.00 43.89 3.51
209 210 4.261741 CCATTGTACAAGGCCTTATGCATC 60.262 45.833 20.00 6.51 43.89 3.91
210 211 3.638160 CCATTGTACAAGGCCTTATGCAT 59.362 43.478 20.00 3.79 43.89 3.96
211 212 3.023119 CCATTGTACAAGGCCTTATGCA 58.977 45.455 20.00 15.18 43.89 3.96
212 213 3.287222 TCCATTGTACAAGGCCTTATGC 58.713 45.455 20.00 12.07 40.16 3.14
213 214 5.192927 TCTTCCATTGTACAAGGCCTTATG 58.807 41.667 20.00 17.28 0.00 1.90
214 215 5.450818 TCTTCCATTGTACAAGGCCTTAT 57.549 39.130 20.00 10.37 0.00 1.73
215 216 4.919774 TCTTCCATTGTACAAGGCCTTA 57.080 40.909 20.00 1.64 0.00 2.69
216 217 3.806949 TCTTCCATTGTACAAGGCCTT 57.193 42.857 13.78 13.78 0.00 4.35
217 218 3.624777 CATCTTCCATTGTACAAGGCCT 58.375 45.455 14.66 0.00 0.00 5.19
218 219 2.099756 GCATCTTCCATTGTACAAGGCC 59.900 50.000 14.66 0.00 0.00 5.19
219 220 3.019564 AGCATCTTCCATTGTACAAGGC 58.980 45.455 14.66 2.38 0.00 4.35
220 221 5.297776 CCTAAGCATCTTCCATTGTACAAGG 59.702 44.000 14.65 13.92 0.00 3.61
221 222 5.297776 CCCTAAGCATCTTCCATTGTACAAG 59.702 44.000 14.65 6.30 0.00 3.16
222 223 5.045213 TCCCTAAGCATCTTCCATTGTACAA 60.045 40.000 11.41 11.41 0.00 2.41
223 224 4.473196 TCCCTAAGCATCTTCCATTGTACA 59.527 41.667 0.00 0.00 0.00 2.90
224 225 5.036117 TCCCTAAGCATCTTCCATTGTAC 57.964 43.478 0.00 0.00 0.00 2.90
225 226 4.103153 CCTCCCTAAGCATCTTCCATTGTA 59.897 45.833 0.00 0.00 0.00 2.41
226 227 3.117738 CCTCCCTAAGCATCTTCCATTGT 60.118 47.826 0.00 0.00 0.00 2.71
227 228 3.117738 ACCTCCCTAAGCATCTTCCATTG 60.118 47.826 0.00 0.00 0.00 2.82
228 229 3.117738 CACCTCCCTAAGCATCTTCCATT 60.118 47.826 0.00 0.00 0.00 3.16
229 230 2.441001 CACCTCCCTAAGCATCTTCCAT 59.559 50.000 0.00 0.00 0.00 3.41
230 231 1.839994 CACCTCCCTAAGCATCTTCCA 59.160 52.381 0.00 0.00 0.00 3.53
231 232 1.475930 GCACCTCCCTAAGCATCTTCC 60.476 57.143 0.00 0.00 0.00 3.46
232 233 1.488393 AGCACCTCCCTAAGCATCTTC 59.512 52.381 0.00 0.00 0.00 2.87
233 234 1.589414 AGCACCTCCCTAAGCATCTT 58.411 50.000 0.00 0.00 0.00 2.40
234 235 1.589414 AAGCACCTCCCTAAGCATCT 58.411 50.000 0.00 0.00 0.00 2.90
235 236 2.700897 TCTAAGCACCTCCCTAAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
236 237 2.764269 TCTAAGCACCTCCCTAAGCAT 58.236 47.619 0.00 0.00 0.00 3.79
237 238 2.247699 TCTAAGCACCTCCCTAAGCA 57.752 50.000 0.00 0.00 0.00 3.91
238 239 3.629142 TTTCTAAGCACCTCCCTAAGC 57.371 47.619 0.00 0.00 0.00 3.09
239 240 8.459635 GTTTATTTTTCTAAGCACCTCCCTAAG 58.540 37.037 0.00 0.00 0.00 2.18
240 241 7.395206 GGTTTATTTTTCTAAGCACCTCCCTAA 59.605 37.037 0.00 0.00 0.00 2.69
241 242 6.888088 GGTTTATTTTTCTAAGCACCTCCCTA 59.112 38.462 0.00 0.00 0.00 3.53
242 243 5.715279 GGTTTATTTTTCTAAGCACCTCCCT 59.285 40.000 0.00 0.00 0.00 4.20
243 244 5.392703 CGGTTTATTTTTCTAAGCACCTCCC 60.393 44.000 0.00 0.00 0.00 4.30
244 245 5.413523 TCGGTTTATTTTTCTAAGCACCTCC 59.586 40.000 0.00 0.00 0.00 4.30
245 246 6.490566 TCGGTTTATTTTTCTAAGCACCTC 57.509 37.500 0.00 0.00 0.00 3.85
246 247 6.887626 TTCGGTTTATTTTTCTAAGCACCT 57.112 33.333 0.00 0.00 0.00 4.00
247 248 8.528917 AAATTCGGTTTATTTTTCTAAGCACC 57.471 30.769 0.00 0.00 0.00 5.01
258 259 8.822855 GGTGTTTCAGAAAAATTCGGTTTATTT 58.177 29.630 0.00 0.00 34.02 1.40
259 260 7.168469 CGGTGTTTCAGAAAAATTCGGTTTATT 59.832 33.333 0.00 0.00 34.02 1.40
260 261 6.639279 CGGTGTTTCAGAAAAATTCGGTTTAT 59.361 34.615 0.00 0.00 34.02 1.40
261 262 5.972382 CGGTGTTTCAGAAAAATTCGGTTTA 59.028 36.000 0.00 0.00 34.02 2.01
262 263 4.801516 CGGTGTTTCAGAAAAATTCGGTTT 59.198 37.500 0.00 0.00 34.02 3.27
263 264 4.096682 TCGGTGTTTCAGAAAAATTCGGTT 59.903 37.500 0.00 0.00 34.02 4.44
264 265 3.628487 TCGGTGTTTCAGAAAAATTCGGT 59.372 39.130 0.00 0.00 34.02 4.69
265 266 4.217754 TCGGTGTTTCAGAAAAATTCGG 57.782 40.909 0.00 0.00 34.02 4.30
266 267 4.088496 GCATCGGTGTTTCAGAAAAATTCG 59.912 41.667 0.00 1.74 34.02 3.34
267 268 5.222631 AGCATCGGTGTTTCAGAAAAATTC 58.777 37.500 0.00 0.00 0.00 2.17
268 269 5.200368 AGCATCGGTGTTTCAGAAAAATT 57.800 34.783 0.00 0.00 0.00 1.82
269 270 4.853924 AGCATCGGTGTTTCAGAAAAAT 57.146 36.364 0.00 0.00 0.00 1.82
270 271 4.647424 AAGCATCGGTGTTTCAGAAAAA 57.353 36.364 0.00 0.00 0.00 1.94
271 272 5.957842 ATAAGCATCGGTGTTTCAGAAAA 57.042 34.783 0.00 0.00 30.94 2.29
272 273 5.957842 AATAAGCATCGGTGTTTCAGAAA 57.042 34.783 0.00 0.00 30.94 2.52
273 274 5.705441 AGAAATAAGCATCGGTGTTTCAGAA 59.295 36.000 0.00 0.00 30.94 3.02
274 275 5.245531 AGAAATAAGCATCGGTGTTTCAGA 58.754 37.500 0.00 0.00 30.94 3.27
275 276 5.551760 AGAAATAAGCATCGGTGTTTCAG 57.448 39.130 0.00 0.00 30.94 3.02
276 277 8.725405 TTATAGAAATAAGCATCGGTGTTTCA 57.275 30.769 0.00 0.00 30.94 2.69
277 278 9.042008 TCTTATAGAAATAAGCATCGGTGTTTC 57.958 33.333 0.00 1.05 42.93 2.78
278 279 8.958119 TCTTATAGAAATAAGCATCGGTGTTT 57.042 30.769 2.54 2.54 42.93 2.83
279 280 8.421784 TCTCTTATAGAAATAAGCATCGGTGTT 58.578 33.333 0.00 0.00 42.93 3.32
280 281 7.952671 TCTCTTATAGAAATAAGCATCGGTGT 58.047 34.615 0.00 0.00 42.93 4.16
281 282 7.543868 CCTCTCTTATAGAAATAAGCATCGGTG 59.456 40.741 0.00 0.00 42.93 4.94
282 283 7.607250 CCTCTCTTATAGAAATAAGCATCGGT 58.393 38.462 1.12 0.00 42.93 4.69
283 284 6.533367 GCCTCTCTTATAGAAATAAGCATCGG 59.467 42.308 1.12 1.41 42.93 4.18
284 285 6.252441 CGCCTCTCTTATAGAAATAAGCATCG 59.748 42.308 1.12 0.00 42.93 3.84
285 286 6.035542 GCGCCTCTCTTATAGAAATAAGCATC 59.964 42.308 0.00 0.00 42.93 3.91
286 287 5.872070 GCGCCTCTCTTATAGAAATAAGCAT 59.128 40.000 0.00 0.00 42.93 3.79
287 288 5.011125 AGCGCCTCTCTTATAGAAATAAGCA 59.989 40.000 2.29 0.00 42.93 3.91
288 289 5.474825 AGCGCCTCTCTTATAGAAATAAGC 58.525 41.667 2.29 0.00 42.93 3.09
289 290 8.301002 ACTAAGCGCCTCTCTTATAGAAATAAG 58.699 37.037 2.29 0.00 44.07 1.73
290 291 8.179509 ACTAAGCGCCTCTCTTATAGAAATAA 57.820 34.615 2.29 0.00 32.46 1.40
291 292 7.762588 ACTAAGCGCCTCTCTTATAGAAATA 57.237 36.000 2.29 0.00 32.46 1.40
292 293 6.658188 ACTAAGCGCCTCTCTTATAGAAAT 57.342 37.500 2.29 0.00 32.46 2.17
293 294 6.466885 AACTAAGCGCCTCTCTTATAGAAA 57.533 37.500 2.29 0.00 32.46 2.52
294 295 7.578310 TTAACTAAGCGCCTCTCTTATAGAA 57.422 36.000 2.29 0.00 32.46 2.10
295 296 7.204496 CTTAACTAAGCGCCTCTCTTATAGA 57.796 40.000 2.29 0.00 0.00 1.98
310 311 7.024340 TGTACAGGATAGACGCTTAACTAAG 57.976 40.000 0.00 0.00 36.40 2.18
311 312 7.395190 TTGTACAGGATAGACGCTTAACTAA 57.605 36.000 0.00 0.00 0.00 2.24
312 313 7.395190 TTTGTACAGGATAGACGCTTAACTA 57.605 36.000 0.00 0.00 0.00 2.24
313 314 5.909621 TTGTACAGGATAGACGCTTAACT 57.090 39.130 0.00 0.00 0.00 2.24
314 315 8.638685 TTATTTGTACAGGATAGACGCTTAAC 57.361 34.615 0.00 0.00 0.00 2.01
315 316 7.437267 GCTTATTTGTACAGGATAGACGCTTAA 59.563 37.037 0.00 0.00 0.00 1.85
316 317 6.921857 GCTTATTTGTACAGGATAGACGCTTA 59.078 38.462 0.00 0.00 0.00 3.09
317 318 5.753921 GCTTATTTGTACAGGATAGACGCTT 59.246 40.000 0.00 0.00 0.00 4.68
318 319 5.163447 TGCTTATTTGTACAGGATAGACGCT 60.163 40.000 0.00 0.00 0.00 5.07
319 320 5.047847 TGCTTATTTGTACAGGATAGACGC 58.952 41.667 0.00 4.64 0.00 5.19
320 321 5.462398 GGTGCTTATTTGTACAGGATAGACG 59.538 44.000 0.00 0.00 0.00 4.18
321 322 5.462398 CGGTGCTTATTTGTACAGGATAGAC 59.538 44.000 0.00 0.00 0.00 2.59
322 323 5.452776 CCGGTGCTTATTTGTACAGGATAGA 60.453 44.000 0.00 0.00 39.37 1.98
323 324 4.750098 CCGGTGCTTATTTGTACAGGATAG 59.250 45.833 0.00 0.00 39.37 2.08
324 325 4.162698 ACCGGTGCTTATTTGTACAGGATA 59.837 41.667 6.12 0.00 39.37 2.59
325 326 3.054655 ACCGGTGCTTATTTGTACAGGAT 60.055 43.478 6.12 0.00 39.37 3.24
326 327 2.303600 ACCGGTGCTTATTTGTACAGGA 59.696 45.455 6.12 0.00 39.37 3.86
327 328 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
328 329 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
354 355 7.831193 TGCTTAGAGAGATAAATCAGGCTTTTT 59.169 33.333 0.00 0.00 0.00 1.94
355 356 7.281999 GTGCTTAGAGAGATAAATCAGGCTTTT 59.718 37.037 0.00 0.00 0.00 2.27
356 357 6.765512 GTGCTTAGAGAGATAAATCAGGCTTT 59.234 38.462 0.00 0.00 0.00 3.51
357 358 6.287525 GTGCTTAGAGAGATAAATCAGGCTT 58.712 40.000 0.00 0.00 0.00 4.35
358 359 5.221621 GGTGCTTAGAGAGATAAATCAGGCT 60.222 44.000 0.00 0.00 0.00 4.58
359 360 4.994217 GGTGCTTAGAGAGATAAATCAGGC 59.006 45.833 0.00 0.00 0.00 4.85
360 361 5.512232 GGGGTGCTTAGAGAGATAAATCAGG 60.512 48.000 0.00 0.00 0.00 3.86
361 362 5.306678 AGGGGTGCTTAGAGAGATAAATCAG 59.693 44.000 0.00 0.00 0.00 2.90
362 363 5.219739 AGGGGTGCTTAGAGAGATAAATCA 58.780 41.667 0.00 0.00 0.00 2.57
363 364 5.816955 AGGGGTGCTTAGAGAGATAAATC 57.183 43.478 0.00 0.00 0.00 2.17
364 365 6.847036 ACTTAGGGGTGCTTAGAGAGATAAAT 59.153 38.462 0.00 0.00 0.00 1.40
365 366 6.203072 ACTTAGGGGTGCTTAGAGAGATAAA 58.797 40.000 0.00 0.00 0.00 1.40
366 367 5.778542 ACTTAGGGGTGCTTAGAGAGATAA 58.221 41.667 0.00 0.00 0.00 1.75
367 368 5.405063 ACTTAGGGGTGCTTAGAGAGATA 57.595 43.478 0.00 0.00 0.00 1.98
368 369 4.273300 ACTTAGGGGTGCTTAGAGAGAT 57.727 45.455 0.00 0.00 0.00 2.75
369 370 3.759815 ACTTAGGGGTGCTTAGAGAGA 57.240 47.619 0.00 0.00 0.00 3.10
370 371 5.390387 AGATACTTAGGGGTGCTTAGAGAG 58.610 45.833 0.00 0.00 0.00 3.20
371 372 5.405063 AGATACTTAGGGGTGCTTAGAGA 57.595 43.478 0.00 0.00 0.00 3.10
372 373 5.740513 GCAAGATACTTAGGGGTGCTTAGAG 60.741 48.000 0.00 0.00 0.00 2.43
373 374 4.101119 GCAAGATACTTAGGGGTGCTTAGA 59.899 45.833 0.00 0.00 0.00 2.10
374 375 4.141711 TGCAAGATACTTAGGGGTGCTTAG 60.142 45.833 0.00 0.00 0.00 2.18
375 376 3.778075 TGCAAGATACTTAGGGGTGCTTA 59.222 43.478 0.00 0.00 0.00 3.09
376 377 2.576191 TGCAAGATACTTAGGGGTGCTT 59.424 45.455 0.00 0.00 0.00 3.91
377 378 2.196595 TGCAAGATACTTAGGGGTGCT 58.803 47.619 0.00 0.00 0.00 4.40
378 379 2.710096 TGCAAGATACTTAGGGGTGC 57.290 50.000 0.00 0.00 0.00 5.01
379 380 4.526970 ACAATGCAAGATACTTAGGGGTG 58.473 43.478 0.00 0.00 0.00 4.61
380 381 4.862641 ACAATGCAAGATACTTAGGGGT 57.137 40.909 0.00 0.00 0.00 4.95
381 382 5.680619 TGTACAATGCAAGATACTTAGGGG 58.319 41.667 0.00 0.00 0.00 4.79
382 383 6.260936 CCTTGTACAATGCAAGATACTTAGGG 59.739 42.308 9.13 0.00 44.29 3.53
383 384 6.238484 GCCTTGTACAATGCAAGATACTTAGG 60.238 42.308 25.28 12.25 44.29 2.69
384 385 6.238484 GGCCTTGTACAATGCAAGATACTTAG 60.238 42.308 29.20 6.37 44.29 2.18
385 386 5.588648 GGCCTTGTACAATGCAAGATACTTA 59.411 40.000 29.20 0.00 44.29 2.24
386 387 4.399303 GGCCTTGTACAATGCAAGATACTT 59.601 41.667 29.20 0.00 44.29 2.24
387 388 3.947834 GGCCTTGTACAATGCAAGATACT 59.052 43.478 29.20 0.00 44.29 2.12
388 389 3.947834 AGGCCTTGTACAATGCAAGATAC 59.052 43.478 29.20 15.49 44.29 2.24
389 390 4.235079 AGGCCTTGTACAATGCAAGATA 57.765 40.909 29.20 0.00 44.29 1.98
390 391 3.091633 AGGCCTTGTACAATGCAAGAT 57.908 42.857 29.20 14.27 44.29 2.40
391 392 2.584835 AGGCCTTGTACAATGCAAGA 57.415 45.000 29.20 0.00 44.29 3.02
392 393 4.380867 CCTTTAGGCCTTGTACAATGCAAG 60.381 45.833 29.20 23.63 42.00 4.01
393 394 3.509575 CCTTTAGGCCTTGTACAATGCAA 59.490 43.478 29.20 17.43 34.30 4.08
394 395 3.088532 CCTTTAGGCCTTGTACAATGCA 58.911 45.455 29.20 13.23 34.30 3.96
395 396 3.782889 CCTTTAGGCCTTGTACAATGC 57.217 47.619 23.06 23.06 0.00 3.56
408 409 1.376609 GCCACCGTCATGCCTTTAGG 61.377 60.000 0.00 0.00 38.53 2.69
409 410 1.705337 CGCCACCGTCATGCCTTTAG 61.705 60.000 0.00 0.00 0.00 1.85
410 411 1.743623 CGCCACCGTCATGCCTTTA 60.744 57.895 0.00 0.00 0.00 1.85
411 412 3.055719 CGCCACCGTCATGCCTTT 61.056 61.111 0.00 0.00 0.00 3.11
433 434 3.000819 CCCGCCACCAGTCCACTA 61.001 66.667 0.00 0.00 0.00 2.74
448 449 2.671963 GCCTTCGTGTTCCCACCC 60.672 66.667 0.00 0.00 38.41 4.61
453 454 0.534203 TGGAGTTGCCTTCGTGTTCC 60.534 55.000 0.00 0.00 37.63 3.62
489 490 1.481871 TAACCCAAGAGCCTACTCCG 58.518 55.000 0.00 0.00 44.65 4.63
496 497 4.640647 CCAAGACTAATTAACCCAAGAGCC 59.359 45.833 0.00 0.00 0.00 4.70
502 503 4.226620 GGACTCCCAAGACTAATTAACCCA 59.773 45.833 0.00 0.00 0.00 4.51
575 599 3.059982 CGCCCTCTGTTCCTGTGA 58.940 61.111 0.00 0.00 0.00 3.58
613 637 4.687901 TTCTGACACATGTTCTTCCTCA 57.312 40.909 0.00 0.00 0.00 3.86
627 651 3.023832 TCACGCTATCCTGATTCTGACA 58.976 45.455 0.00 0.00 0.00 3.58
650 674 1.393603 TGTGTGCCGTTGGATCAAAA 58.606 45.000 0.00 0.00 0.00 2.44
853 884 2.910199 CTTGAGGAGCGAATCATGGAA 58.090 47.619 0.00 0.00 0.00 3.53
1013 1046 2.226315 AGCTGTGGTCTGATGGCCA 61.226 57.895 8.56 8.56 0.00 5.36
1078 1112 0.912486 ACTGCATTGGTAGAGACCCC 59.088 55.000 0.00 0.00 46.32 4.95
1104 1138 1.653920 GAACGAAGACGAGTGCGACG 61.654 60.000 0.00 0.00 42.66 5.12
1107 1141 0.703466 GAAGAACGAAGACGAGTGCG 59.297 55.000 0.00 0.00 42.66 5.34
1118 1152 3.785486 CAGCCATATGTGAGAAGAACGA 58.215 45.455 1.24 0.00 0.00 3.85
1245 1279 3.315140 TTGTCATCGGGACCGGCA 61.315 61.111 11.27 2.91 46.38 5.69
1307 1349 0.462937 AGGTTGCACTGTGTAACGCA 60.463 50.000 27.35 10.13 42.66 5.24
1308 1350 0.661020 AAGGTTGCACTGTGTAACGC 59.339 50.000 27.35 21.52 42.66 4.84
1318 1360 5.883673 TGTTATTAGTATCCCAAGGTTGCAC 59.116 40.000 0.00 0.00 0.00 4.57
1322 1364 7.497909 CGACATTGTTATTAGTATCCCAAGGTT 59.502 37.037 0.00 0.00 28.41 3.50
1324 1366 7.214381 TCGACATTGTTATTAGTATCCCAAGG 58.786 38.462 0.00 0.00 0.00 3.61
1328 1370 7.310664 TCGATCGACATTGTTATTAGTATCCC 58.689 38.462 15.15 0.00 0.00 3.85
1334 1376 7.330318 CACAGTTCGATCGACATTGTTATTAG 58.670 38.462 19.26 6.53 0.00 1.73
1430 1473 3.157680 CCGTCCTTGAACAGGGGT 58.842 61.111 3.27 0.00 44.12 4.95
1471 1514 2.276472 TTATGCACACGTACGTACCC 57.724 50.000 22.34 12.04 0.00 3.69
1489 1535 8.066000 GTCGGCGCTTAGTGTAATTAATTTATT 58.934 33.333 7.64 0.00 0.00 1.40
1518 1568 8.508062 ACTAATCTAGTGTAATGACTAGCATCG 58.492 37.037 0.00 0.00 43.57 3.84
1582 1634 6.097270 ACTGCTACCCACGTACTATTTCATTA 59.903 38.462 0.00 0.00 0.00 1.90
1583 1635 5.105064 ACTGCTACCCACGTACTATTTCATT 60.105 40.000 0.00 0.00 0.00 2.57
1584 1636 4.404715 ACTGCTACCCACGTACTATTTCAT 59.595 41.667 0.00 0.00 0.00 2.57
1585 1637 3.765511 ACTGCTACCCACGTACTATTTCA 59.234 43.478 0.00 0.00 0.00 2.69
1586 1638 4.357996 GACTGCTACCCACGTACTATTTC 58.642 47.826 0.00 0.00 0.00 2.17
1587 1639 3.131755 GGACTGCTACCCACGTACTATTT 59.868 47.826 0.00 0.00 0.00 1.40
1588 1640 2.692041 GGACTGCTACCCACGTACTATT 59.308 50.000 0.00 0.00 0.00 1.73
1589 1641 2.305009 GGACTGCTACCCACGTACTAT 58.695 52.381 0.00 0.00 0.00 2.12
1590 1642 1.755179 GGACTGCTACCCACGTACTA 58.245 55.000 0.00 0.00 0.00 1.82
1592 1644 1.138247 CGGACTGCTACCCACGTAC 59.862 63.158 0.00 0.00 0.00 3.67
1611 1663 6.600032 TCTTTTGAGCCTAGACTACAGAGTAG 59.400 42.308 2.79 2.79 35.45 2.57
1612 1664 6.482524 TCTTTTGAGCCTAGACTACAGAGTA 58.517 40.000 0.00 0.00 35.45 2.59
1615 1667 5.952347 TGATCTTTTGAGCCTAGACTACAGA 59.048 40.000 0.00 0.00 33.14 3.41
1616 1668 6.214191 TGATCTTTTGAGCCTAGACTACAG 57.786 41.667 0.00 0.00 33.14 2.74
1617 1669 6.577103 CATGATCTTTTGAGCCTAGACTACA 58.423 40.000 0.00 0.00 33.14 2.74
1619 1695 5.365025 AGCATGATCTTTTGAGCCTAGACTA 59.635 40.000 0.00 0.00 33.14 2.59
1625 1701 3.201290 CGTAGCATGATCTTTTGAGCCT 58.799 45.455 0.00 0.00 33.14 4.58
1642 1718 4.110482 GTCAACTAATGGGCTACACGTAG 58.890 47.826 0.00 0.00 36.29 3.51
1653 1735 4.520492 ACCAAGCAGAAAGTCAACTAATGG 59.480 41.667 0.00 0.00 0.00 3.16
1758 1840 1.274167 TCGAAATGGTACTTGGCGACT 59.726 47.619 0.00 0.00 0.00 4.18
1761 1843 0.725117 GGTCGAAATGGTACTTGGCG 59.275 55.000 0.00 0.00 0.00 5.69
1815 1897 1.301716 GAGCTTGTCGTTCTGGCCA 60.302 57.895 4.71 4.71 0.00 5.36
1926 2012 2.658593 CCAGAGCCGATAACGCCG 60.659 66.667 0.00 0.00 38.29 6.46
1927 2013 1.591863 GACCAGAGCCGATAACGCC 60.592 63.158 0.00 0.00 38.29 5.68
1928 2014 1.141019 TGACCAGAGCCGATAACGC 59.859 57.895 0.00 0.00 38.29 4.84
1929 2015 0.456221 AGTGACCAGAGCCGATAACG 59.544 55.000 0.00 0.00 39.43 3.18
1930 2016 1.476891 TCAGTGACCAGAGCCGATAAC 59.523 52.381 0.00 0.00 0.00 1.89
1931 2017 1.847328 TCAGTGACCAGAGCCGATAA 58.153 50.000 0.00 0.00 0.00 1.75
1932 2018 1.957177 GATCAGTGACCAGAGCCGATA 59.043 52.381 0.00 0.00 0.00 2.92
1933 2019 0.749649 GATCAGTGACCAGAGCCGAT 59.250 55.000 0.00 0.00 0.00 4.18
1934 2020 0.611896 TGATCAGTGACCAGAGCCGA 60.612 55.000 0.00 0.00 0.00 5.54
1935 2021 0.179116 CTGATCAGTGACCAGAGCCG 60.179 60.000 9.08 0.00 0.00 5.52
1994 2080 3.826157 GTGGAAGTTCATGTTCAATCCCA 59.174 43.478 5.01 0.00 0.00 4.37
1998 2084 3.186409 CGACGTGGAAGTTCATGTTCAAT 59.814 43.478 5.01 0.00 37.05 2.57
2005 2091 0.732880 CGCTCGACGTGGAAGTTCAT 60.733 55.000 5.01 0.00 36.87 2.57
2098 2184 1.407437 GCCGTTCCTTGACTCCATGAT 60.407 52.381 0.00 0.00 0.00 2.45
2151 2237 4.776322 CAGATGGCGCCCCACGAA 62.776 66.667 26.77 3.54 45.77 3.85
2363 2449 7.020602 TCAACAATATACTTTGCATTCACACG 58.979 34.615 0.00 0.00 0.00 4.49
2406 2492 7.880195 CCTCCTTCCATTCCAAACATATACTAG 59.120 40.741 0.00 0.00 0.00 2.57
2411 2497 4.078980 AGCCTCCTTCCATTCCAAACATAT 60.079 41.667 0.00 0.00 0.00 1.78
2412 2498 3.269381 AGCCTCCTTCCATTCCAAACATA 59.731 43.478 0.00 0.00 0.00 2.29
2413 2499 2.043526 AGCCTCCTTCCATTCCAAACAT 59.956 45.455 0.00 0.00 0.00 2.71
2416 2502 2.999185 AAGCCTCCTTCCATTCCAAA 57.001 45.000 0.00 0.00 0.00 3.28
2469 2585 3.060866 GACAGAAGTCCGGCCTGT 58.939 61.111 15.15 15.15 43.11 4.00
2478 2594 3.246416 ACTACTCCACTGGACAGAAGT 57.754 47.619 6.29 8.69 0.00 3.01
2519 2638 3.244814 CGAGCTGTGAATCTTGTGATAGC 59.755 47.826 0.00 0.00 33.19 2.97
2580 2699 4.941713 ACACAATTGGTACCCCATAATGT 58.058 39.130 10.07 4.27 41.49 2.71
2590 2709 8.039603 TGATTGACTGAATACACAATTGGTAC 57.960 34.615 10.83 0.24 33.92 3.34
2689 2837 3.782523 TCCCTAATGAATGAGCCTCTGTT 59.217 43.478 0.00 0.00 0.00 3.16
2698 2846 1.116308 TCGGCGTCCCTAATGAATGA 58.884 50.000 6.85 0.00 0.00 2.57
2712 2872 1.948104 TCAAATGGGACTTATCGGCG 58.052 50.000 0.00 0.00 0.00 6.46
2765 5420 6.857964 ACTAAACTTTTCATGATCAGCAAACG 59.142 34.615 0.09 3.15 0.00 3.60
2775 5430 6.463995 ACTTGCCAACTAAACTTTTCATGA 57.536 33.333 0.00 0.00 0.00 3.07
2776 5431 7.329226 CCATACTTGCCAACTAAACTTTTCATG 59.671 37.037 0.00 0.00 0.00 3.07
2780 5435 5.069781 TGCCATACTTGCCAACTAAACTTTT 59.930 36.000 0.00 0.00 0.00 2.27
2781 5436 4.586841 TGCCATACTTGCCAACTAAACTTT 59.413 37.500 0.00 0.00 0.00 2.66
2792 5447 2.857748 GCGTAAATTTGCCATACTTGCC 59.142 45.455 0.00 0.00 0.00 4.52
2798 5453 9.724839 GAACTTAATTAGCGTAAATTTGCCATA 57.275 29.630 0.00 0.00 31.63 2.74
2835 5490 0.036765 TACGAGCACGGCAATTTCCT 60.037 50.000 8.74 0.00 44.46 3.36
2861 5516 1.552337 AGTTGATGCGAGGATGACACT 59.448 47.619 0.00 0.00 0.00 3.55
2862 5517 2.015736 AGTTGATGCGAGGATGACAC 57.984 50.000 0.00 0.00 0.00 3.67
2898 5553 3.182887 TGGCCCTGGTAAATCAAATGT 57.817 42.857 0.00 0.00 0.00 2.71
2899 5554 4.550076 TTTGGCCCTGGTAAATCAAATG 57.450 40.909 0.00 0.00 0.00 2.32
2900 5555 5.339118 GGATTTTGGCCCTGGTAAATCAAAT 60.339 40.000 18.08 5.09 38.25 2.32
2903 5558 3.103742 GGATTTTGGCCCTGGTAAATCA 58.896 45.455 18.08 0.00 38.25 2.57
2910 5565 1.890174 GTTCGGATTTTGGCCCTGG 59.110 57.895 0.00 0.00 0.00 4.45
2913 5568 0.958876 AGACGTTCGGATTTTGGCCC 60.959 55.000 0.00 0.00 0.00 5.80
2916 5571 2.683968 TCTCAGACGTTCGGATTTTGG 58.316 47.619 0.00 0.00 0.00 3.28
2960 5615 8.041323 TGTCTTGAAACTCTTGTCTAACTTCTT 58.959 33.333 0.00 0.00 0.00 2.52
2980 5635 1.876156 GTCTCTTGGCCTTGTGTCTTG 59.124 52.381 3.32 0.00 0.00 3.02
2999 5654 3.824443 AGTAGCGGCTTTGTAATTTTGGT 59.176 39.130 8.26 0.00 0.00 3.67
3016 5672 5.571741 GGTTAAATTTTGCCGAGAAAGTAGC 59.428 40.000 0.00 0.00 0.00 3.58
3022 5678 4.342665 ACTTGGGTTAAATTTTGCCGAGAA 59.657 37.500 0.00 0.00 0.00 2.87
3025 5681 5.986501 ATACTTGGGTTAAATTTTGCCGA 57.013 34.783 0.00 0.00 0.00 5.54
3026 5682 6.635239 CGATATACTTGGGTTAAATTTTGCCG 59.365 38.462 0.00 0.00 0.00 5.69
3035 5691 3.321682 CGGGTCCGATATACTTGGGTTAA 59.678 47.826 2.83 0.00 42.83 2.01
3037 5693 1.690352 CGGGTCCGATATACTTGGGTT 59.310 52.381 2.83 0.00 42.83 4.11
3048 5705 1.046472 TCAGCCATTACGGGTCCGAT 61.046 55.000 16.90 3.30 44.26 4.18
3052 5709 0.733150 GCTTTCAGCCATTACGGGTC 59.267 55.000 0.00 0.00 44.26 4.46
3065 5722 7.422465 AAATAATAATGAGGCAAGGCTTTCA 57.578 32.000 0.00 0.00 0.00 2.69
3109 5766 2.485122 GACAATTTGGGGCGAGCG 59.515 61.111 0.78 0.00 0.00 5.03
3130 5787 8.956426 TGGCCTTTATCTTTGTTTATGTTAGAG 58.044 33.333 3.32 0.00 0.00 2.43
3143 5800 5.656859 GGTAGACCATTTGGCCTTTATCTTT 59.343 40.000 3.32 0.00 39.32 2.52
3148 5805 2.024751 GGGGTAGACCATTTGGCCTTTA 60.025 50.000 3.32 0.00 42.91 1.85
3155 5812 3.449746 TGAAAGGGGGTAGACCATTTG 57.550 47.619 0.21 0.00 43.79 2.32
3157 5814 3.817931 GCTTTGAAAGGGGGTAGACCATT 60.818 47.826 7.09 0.00 42.91 3.16
3163 5820 1.075536 ACTGGCTTTGAAAGGGGGTAG 59.924 52.381 7.09 0.00 0.00 3.18
3167 5824 1.703411 TTGACTGGCTTTGAAAGGGG 58.297 50.000 7.09 0.00 0.00 4.79
3171 5828 1.412343 GGGCTTTGACTGGCTTTGAAA 59.588 47.619 0.00 0.00 0.00 2.69
3174 5831 1.815003 CTAGGGCTTTGACTGGCTTTG 59.185 52.381 0.00 0.00 0.00 2.77
3175 5832 1.705186 TCTAGGGCTTTGACTGGCTTT 59.295 47.619 0.00 0.00 0.00 3.51
3182 5840 1.808133 CGCTCCATCTAGGGCTTTGAC 60.808 57.143 0.00 0.00 38.24 3.18
3218 5876 1.891060 GCGCAGTTTCGGACACAGAG 61.891 60.000 0.30 0.00 0.00 3.35
3219 5877 1.954146 GCGCAGTTTCGGACACAGA 60.954 57.895 0.30 0.00 0.00 3.41
3220 5878 2.551270 GCGCAGTTTCGGACACAG 59.449 61.111 0.30 0.00 0.00 3.66
3222 5880 3.000080 CTCGCGCAGTTTCGGACAC 62.000 63.158 8.75 0.00 0.00 3.67
3224 5882 3.479269 CCTCGCGCAGTTTCGGAC 61.479 66.667 8.75 0.00 0.00 4.79
3225 5883 4.735132 CCCTCGCGCAGTTTCGGA 62.735 66.667 8.75 0.00 0.00 4.55
3227 5885 3.181967 CTCCCTCGCGCAGTTTCG 61.182 66.667 8.75 0.00 0.00 3.46
3228 5886 2.579684 ATCCTCCCTCGCGCAGTTTC 62.580 60.000 8.75 0.00 0.00 2.78
3237 5895 0.105778 GGCTTTCTGATCCTCCCTCG 59.894 60.000 0.00 0.00 0.00 4.63
3242 5900 2.026822 TGTTGGAGGCTTTCTGATCCTC 60.027 50.000 10.76 10.76 44.28 3.71
3246 5904 1.707427 AGGTGTTGGAGGCTTTCTGAT 59.293 47.619 0.00 0.00 0.00 2.90
3254 5912 1.001641 AGATGCAGGTGTTGGAGGC 60.002 57.895 0.00 0.00 0.00 4.70
3261 5919 1.207488 TTAGGGCCAGATGCAGGTGT 61.207 55.000 6.18 0.00 43.89 4.16
3263 5921 1.819753 TATTAGGGCCAGATGCAGGT 58.180 50.000 6.18 0.00 43.89 4.00
3264 5922 4.458397 CATATATTAGGGCCAGATGCAGG 58.542 47.826 6.18 0.00 43.89 4.85
3266 5924 3.266513 TGCATATATTAGGGCCAGATGCA 59.733 43.478 16.98 16.98 44.23 3.96
3267 5925 3.629398 GTGCATATATTAGGGCCAGATGC 59.371 47.826 12.72 12.72 38.89 3.91
3268 5926 4.847198 TGTGCATATATTAGGGCCAGATG 58.153 43.478 6.18 0.00 0.00 2.90
3269 5927 5.519183 TTGTGCATATATTAGGGCCAGAT 57.481 39.130 6.18 0.94 0.00 2.90
3270 5928 4.991789 TTGTGCATATATTAGGGCCAGA 57.008 40.909 6.18 0.00 0.00 3.86
3271 5929 5.562696 CGTTTTGTGCATATATTAGGGCCAG 60.563 44.000 6.18 0.00 0.00 4.85
3283 5941 6.091577 CACCTTACACTATCGTTTTGTGCATA 59.908 38.462 0.00 0.00 35.33 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.