Multiple sequence alignment - TraesCS1B01G225500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G225500 chr1B 100.000 3026 0 0 1 3026 404899554 404896529 0.000000e+00 5589.0
1 TraesCS1B01G225500 chr1D 93.870 2137 87 18 106 2217 300027183 300025066 0.000000e+00 3181.0
2 TraesCS1B01G225500 chr1D 89.610 385 24 10 2656 3026 300024178 300023796 2.730000e-130 475.0
3 TraesCS1B01G225500 chr1D 90.948 232 18 3 2212 2442 300025021 300024792 2.930000e-80 309.0
4 TraesCS1B01G225500 chr1D 86.099 223 16 6 2446 2662 300024760 300024547 3.040000e-55 226.0
5 TraesCS1B01G225500 chr1D 90.411 73 4 1 1 73 300027255 300027186 3.210000e-15 93.5
6 TraesCS1B01G225500 chr1A 92.373 2242 99 23 1 2216 374279938 374277743 0.000000e+00 3127.0
7 TraesCS1B01G225500 chr1A 79.306 778 65 44 2283 3016 374277165 374276440 9.890000e-125 457.0
8 TraesCS1B01G225500 chr2B 90.625 64 6 0 1669 1732 620861196 620861133 5.380000e-13 86.1
9 TraesCS1B01G225500 chr2D 89.062 64 7 0 1669 1732 524932003 524931940 2.500000e-11 80.5
10 TraesCS1B01G225500 chr2A 87.500 64 8 0 1669 1732 670314599 670314536 1.160000e-09 75.0
11 TraesCS1B01G225500 chr6D 94.444 36 2 0 1705 1740 464674913 464674878 4.210000e-04 56.5
12 TraesCS1B01G225500 chr6B 94.444 36 2 0 1705 1740 708516288 708516253 4.210000e-04 56.5
13 TraesCS1B01G225500 chr6A 94.444 36 2 0 1705 1740 611197770 611197805 4.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G225500 chr1B 404896529 404899554 3025 True 5589.0 5589 100.0000 1 3026 1 chr1B.!!$R1 3025
1 TraesCS1B01G225500 chr1D 300023796 300027255 3459 True 856.9 3181 90.1876 1 3026 5 chr1D.!!$R1 3025
2 TraesCS1B01G225500 chr1A 374276440 374279938 3498 True 1792.0 3127 85.8395 1 3016 2 chr1A.!!$R1 3015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 931 0.106708 AGCAAGCAACAGAGGAACGA 59.893 50.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2592 3186 0.179045 AACTGACTCACACACCCTGC 60.179 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.950975 TGTGCAAGCATGTCTTCTTTCA 59.049 40.909 0.00 0.00 31.27 2.69
64 65 2.223745 AGCAAAATTGTAACCCGACGT 58.776 42.857 0.00 0.00 0.00 4.34
132 134 0.474184 AATCGTGGCCCCAAGATAGG 59.526 55.000 14.61 0.00 42.56 2.57
146 152 2.324541 AGATAGGCCTTCAGAGCGATT 58.675 47.619 12.58 0.00 0.00 3.34
164 170 5.039333 GCGATTGGAGAAGGAATTGAATTG 58.961 41.667 0.00 0.00 0.00 2.32
169 175 4.202770 TGGAGAAGGAATTGAATTGGGGAA 60.203 41.667 0.00 0.00 0.00 3.97
304 317 3.525619 GAGTATCCCACACGCACAA 57.474 52.632 0.00 0.00 0.00 3.33
374 391 2.044352 TCGACAGCCGATCCTCCA 60.044 61.111 0.00 0.00 43.23 3.86
418 435 1.078988 GGCCAAACGTACGGGATCA 60.079 57.895 21.06 0.00 0.00 2.92
514 534 1.482593 AGGCCGACGATCTTCTTGATT 59.517 47.619 0.00 0.00 35.14 2.57
577 598 3.223589 GCAGGTGGGCCGTTTTGT 61.224 61.111 0.00 0.00 40.50 2.83
580 601 1.830847 AGGTGGGCCGTTTTGTTCC 60.831 57.895 0.00 0.00 40.50 3.62
659 685 0.451783 GTTTTCGATTGCTCGGCCAT 59.548 50.000 2.24 0.00 45.10 4.40
728 758 1.911057 CCTCCCCACTTGTTTCTTCC 58.089 55.000 0.00 0.00 0.00 3.46
729 759 1.425448 CCTCCCCACTTGTTTCTTCCT 59.575 52.381 0.00 0.00 0.00 3.36
730 760 2.553247 CCTCCCCACTTGTTTCTTCCTC 60.553 54.545 0.00 0.00 0.00 3.71
731 761 2.373502 CTCCCCACTTGTTTCTTCCTCT 59.626 50.000 0.00 0.00 0.00 3.69
732 762 2.372172 TCCCCACTTGTTTCTTCCTCTC 59.628 50.000 0.00 0.00 0.00 3.20
733 763 2.417719 CCCACTTGTTTCTTCCTCTCG 58.582 52.381 0.00 0.00 0.00 4.04
734 764 2.224305 CCCACTTGTTTCTTCCTCTCGT 60.224 50.000 0.00 0.00 0.00 4.18
735 765 3.467803 CCACTTGTTTCTTCCTCTCGTT 58.532 45.455 0.00 0.00 0.00 3.85
736 766 3.495001 CCACTTGTTTCTTCCTCTCGTTC 59.505 47.826 0.00 0.00 0.00 3.95
853 885 1.283029 CTTCTGCTTGGATCTTCCCCA 59.717 52.381 0.00 0.00 35.03 4.96
877 909 2.100989 GACTATCAGTTGTCCCTCGGT 58.899 52.381 0.00 0.00 0.00 4.69
889 921 1.576421 CCTCGGTTGAGCAAGCAAC 59.424 57.895 12.23 8.15 45.62 4.17
895 927 1.597742 GTTGAGCAAGCAACAGAGGA 58.402 50.000 10.89 0.00 45.65 3.71
896 928 1.949525 GTTGAGCAAGCAACAGAGGAA 59.050 47.619 10.89 0.00 45.65 3.36
897 929 1.597742 TGAGCAAGCAACAGAGGAAC 58.402 50.000 0.00 0.00 0.00 3.62
898 930 0.514691 GAGCAAGCAACAGAGGAACG 59.485 55.000 0.00 0.00 0.00 3.95
899 931 0.106708 AGCAAGCAACAGAGGAACGA 59.893 50.000 0.00 0.00 0.00 3.85
900 932 0.944386 GCAAGCAACAGAGGAACGAA 59.056 50.000 0.00 0.00 0.00 3.85
963 995 1.336632 ACCTGATCTCTGCTGCTCCC 61.337 60.000 0.00 0.00 0.00 4.30
982 1016 2.524306 CCTTGCCTTGTGTGGGAATTA 58.476 47.619 0.00 0.00 36.84 1.40
997 1031 3.426292 GGGAATTAGTCTTGCTCGTTTGC 60.426 47.826 0.00 0.00 0.00 3.68
1033 1067 2.046892 GCAAGCTCTGCTTCCGGA 60.047 61.111 0.00 0.00 46.77 5.14
1149 1183 2.992689 TCGCCGCCACTGTCCTTA 60.993 61.111 0.00 0.00 0.00 2.69
1152 1186 2.662596 CCGCCACTGTCCTTAGCA 59.337 61.111 0.00 0.00 0.00 3.49
1197 1231 1.079503 GTAAGCCAGCTCAACCGAAG 58.920 55.000 0.00 0.00 0.00 3.79
1200 1234 2.048222 CCAGCTCAACCGAAGCGA 60.048 61.111 0.00 0.00 0.00 4.93
1211 1245 2.435059 GAAGCGACTGTCCTGGGC 60.435 66.667 1.55 0.00 0.00 5.36
1496 1530 1.153958 CGCTCGTGATGCTGTCTCA 60.154 57.895 0.00 0.00 0.00 3.27
1599 1633 2.745492 GACGAGGACGAGGACGGT 60.745 66.667 0.00 0.00 44.46 4.83
1610 1644 4.955774 GGACGGTCGCAACGTGGT 62.956 66.667 3.98 0.00 45.68 4.16
1628 1662 1.746615 TCGGCGAGGCTTACTACGT 60.747 57.895 4.99 0.00 0.00 3.57
1633 1667 1.284657 CGAGGCTTACTACGTCGAGA 58.715 55.000 0.00 0.00 45.50 4.04
2102 2137 0.469070 AGATGAGCTCATGGACTGGC 59.531 55.000 33.33 16.61 36.57 4.85
2145 2180 0.250640 GCATGGATGGATTCGAGGCT 60.251 55.000 0.00 0.00 36.97 4.58
2266 2360 7.702772 CCACTGTATCTACATGTTACTCTGTTC 59.297 40.741 2.30 0.00 35.36 3.18
2268 2362 9.682465 ACTGTATCTACATGTTACTCTGTTCTA 57.318 33.333 2.30 0.00 35.36 2.10
2343 2890 4.904154 CGCTTTGTTGAACTTTACAGTAGC 59.096 41.667 0.00 0.00 33.81 3.58
2362 2909 1.429463 CCGTAACAGCTCACCACTTC 58.571 55.000 0.00 0.00 0.00 3.01
2380 2927 2.740055 AGCTCGCGAAACTGCCAG 60.740 61.111 11.33 0.00 0.00 4.85
2391 2938 0.689623 AACTGCCAGTGCTCTAGCTT 59.310 50.000 0.00 0.00 42.66 3.74
2415 2962 9.956720 CTTCTATAATTTGCTGGGATAAAACAG 57.043 33.333 0.00 0.00 37.76 3.16
2443 2990 9.438228 AATTGATGCATTGAACAATTGAATACA 57.562 25.926 18.26 3.21 40.07 2.29
2444 2991 8.468720 TTGATGCATTGAACAATTGAATACAG 57.531 30.769 13.59 0.00 0.00 2.74
2446 2993 8.738106 TGATGCATTGAACAATTGAATACAGTA 58.262 29.630 13.59 0.00 0.00 2.74
2482 3057 2.779755 TGTTGTTGGTCACAGTGTCT 57.220 45.000 0.00 0.00 36.48 3.41
2491 3066 1.065551 GTCACAGTGTCTTTTGCCCAC 59.934 52.381 0.00 0.00 0.00 4.61
2522 3098 2.975799 GTTCGGTTTCAGCGGCCA 60.976 61.111 2.24 0.00 39.89 5.36
2524 3100 2.331893 TTCGGTTTCAGCGGCCATG 61.332 57.895 2.24 0.00 39.89 3.66
2525 3101 3.055719 CGGTTTCAGCGGCCATGT 61.056 61.111 2.24 0.00 35.16 3.21
2526 3102 1.743623 CGGTTTCAGCGGCCATGTA 60.744 57.895 2.24 0.00 35.16 2.29
2557 3150 4.064388 AGCAGCTCTCTCACTTTCTTTTC 58.936 43.478 0.00 0.00 0.00 2.29
2576 3169 0.384669 CTGGCCGTACAGTAGTAGGC 59.615 60.000 11.44 11.44 40.64 3.93
2580 3174 2.020694 GCCGTACAGTAGTAGGCTCCA 61.021 57.143 12.25 0.00 39.43 3.86
2584 3178 0.330604 ACAGTAGTAGGCTCCACCGA 59.669 55.000 0.00 0.00 46.52 4.69
2586 3180 0.106619 AGTAGTAGGCTCCACCGAGG 60.107 60.000 0.00 0.00 46.52 4.63
2587 3181 1.108132 GTAGTAGGCTCCACCGAGGG 61.108 65.000 0.00 0.00 46.52 4.30
2588 3182 2.923634 TAGTAGGCTCCACCGAGGGC 62.924 65.000 0.00 0.00 46.52 5.19
2621 3215 2.026729 TGTGAGTCAGTTGGTTGGTTCA 60.027 45.455 0.00 0.00 0.00 3.18
2625 3219 1.604278 GTCAGTTGGTTGGTTCAGCTC 59.396 52.381 0.00 0.00 0.00 4.09
2640 3239 2.951745 CTCTTGCCGAGCTACGCG 60.952 66.667 3.53 3.53 41.07 6.01
2645 3244 2.950194 GCCGAGCTACGCGTCTTC 60.950 66.667 18.63 11.35 41.07 2.87
2677 3651 0.670162 GCTGCTTCTGTTTGCTTCCA 59.330 50.000 0.00 0.00 0.00 3.53
2688 3662 1.028905 TTGCTTCCACGTGAAAAGGG 58.971 50.000 19.30 0.00 31.06 3.95
2690 3664 1.172812 GCTTCCACGTGAAAAGGGCT 61.173 55.000 19.30 0.00 31.06 5.19
2694 3668 0.535102 CCACGTGAAAAGGGCTCTGT 60.535 55.000 19.30 0.00 0.00 3.41
2695 3669 1.308998 CACGTGAAAAGGGCTCTGTT 58.691 50.000 10.90 0.00 0.00 3.16
2698 3672 2.367567 ACGTGAAAAGGGCTCTGTTCTA 59.632 45.455 17.56 1.55 37.94 2.10
2711 3690 5.295045 GGCTCTGTTCTACTCTCACTAGTAC 59.705 48.000 0.00 0.00 0.00 2.73
2712 3691 6.110707 GCTCTGTTCTACTCTCACTAGTACT 58.889 44.000 0.00 0.00 0.00 2.73
2713 3692 7.267128 GCTCTGTTCTACTCTCACTAGTACTA 58.733 42.308 1.89 1.89 0.00 1.82
2714 3693 7.437267 GCTCTGTTCTACTCTCACTAGTACTAG 59.563 44.444 25.30 25.30 39.04 2.57
2715 3694 8.365060 TCTGTTCTACTCTCACTAGTACTAGT 57.635 38.462 26.61 26.61 46.52 2.57
2716 3695 9.473007 TCTGTTCTACTCTCACTAGTACTAGTA 57.527 37.037 30.34 17.18 43.98 1.82
2856 3845 1.153628 GCGGCAGTGTAGGTGTAGG 60.154 63.158 0.00 0.00 0.00 3.18
2907 3901 3.865830 GCGCTAAACTGCTCGCCC 61.866 66.667 0.00 0.00 41.53 6.13
2916 3910 2.754254 TGCTCGCCCTCGCTTCTA 60.754 61.111 0.00 0.00 35.26 2.10
2931 3931 0.978146 TTCTAGTCCTGGCCTGCCTC 60.978 60.000 9.97 0.00 36.94 4.70
2957 3957 0.250770 GTTTGTCTCCTCCCCGCTTT 60.251 55.000 0.00 0.00 0.00 3.51
2976 3976 3.839432 GGAGCCTAGCGCGGTTCT 61.839 66.667 19.09 11.75 44.76 3.01
2977 3977 2.184579 GAGCCTAGCGCGGTTCTT 59.815 61.111 19.09 0.00 44.76 2.52
2995 3995 3.170717 TCTTCCTCGGCTTCTTTTCCTA 58.829 45.455 0.00 0.00 0.00 2.94
3012 4012 3.738434 TCCTACCCATTTTACCTGCCTA 58.262 45.455 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.322830 CGTGTCCTCGTGTCTCCGA 61.323 63.158 0.00 0.00 35.22 4.55
79 80 2.213499 GTATGGATTCCTTGAGGCGTG 58.787 52.381 3.95 0.00 34.44 5.34
122 124 1.202746 GCTCTGAAGGCCTATCTTGGG 60.203 57.143 5.16 5.06 0.00 4.12
132 134 0.176680 TCTCCAATCGCTCTGAAGGC 59.823 55.000 0.00 0.00 0.00 4.35
134 136 2.167281 TCCTTCTCCAATCGCTCTGAAG 59.833 50.000 0.00 0.00 0.00 3.02
146 152 3.336391 TCCCCAATTCAATTCCTTCTCCA 59.664 43.478 0.00 0.00 0.00 3.86
164 170 0.903942 TGCTGCCAAATCAATTCCCC 59.096 50.000 0.00 0.00 0.00 4.81
169 175 4.018490 TGACATACTGCTGCCAAATCAAT 58.982 39.130 0.00 0.00 0.00 2.57
304 317 8.785184 TCGGGGGAAATTATTTATTTATTGGT 57.215 30.769 0.00 0.00 36.59 3.67
374 391 5.582665 CGCTTTTAGCAGAGAATTAAGGAGT 59.417 40.000 0.00 0.00 42.58 3.85
418 435 2.897972 GGGAGTTACGCCCGTCAT 59.102 61.111 8.70 0.00 33.05 3.06
495 515 1.941325 AATCAAGAAGATCGTCGGCC 58.059 50.000 2.87 0.00 35.39 6.13
514 534 1.781786 TGGGCTGTAAAACTGGCAAA 58.218 45.000 11.51 0.00 42.87 3.68
577 598 1.631388 TCGGGGAATTAACTGCTGGAA 59.369 47.619 0.00 0.00 0.00 3.53
580 601 3.545703 AGAATCGGGGAATTAACTGCTG 58.454 45.455 0.00 0.00 0.00 4.41
659 685 2.126914 AAATACGCAGCAACGCAAAA 57.873 40.000 0.00 0.00 36.19 2.44
728 758 0.820871 CCAAGGAGGAGGAACGAGAG 59.179 60.000 0.00 0.00 41.22 3.20
729 759 1.258445 GCCAAGGAGGAGGAACGAGA 61.258 60.000 0.00 0.00 41.22 4.04
730 760 1.219393 GCCAAGGAGGAGGAACGAG 59.781 63.158 0.00 0.00 41.22 4.18
731 761 2.646175 CGCCAAGGAGGAGGAACGA 61.646 63.158 0.00 0.00 41.22 3.85
732 762 2.125512 CGCCAAGGAGGAGGAACG 60.126 66.667 0.00 0.00 41.22 3.95
877 909 1.949525 GTTCCTCTGTTGCTTGCTCAA 59.050 47.619 0.00 0.00 0.00 3.02
889 921 2.603173 GCTTTGCTTGTTCGTTCCTCTG 60.603 50.000 0.00 0.00 0.00 3.35
895 927 0.249031 GCTGGCTTTGCTTGTTCGTT 60.249 50.000 0.00 0.00 0.00 3.85
896 928 1.360192 GCTGGCTTTGCTTGTTCGT 59.640 52.632 0.00 0.00 0.00 3.85
897 929 0.248990 TTGCTGGCTTTGCTTGTTCG 60.249 50.000 0.00 0.00 0.00 3.95
898 930 1.494824 CTTGCTGGCTTTGCTTGTTC 58.505 50.000 0.00 0.00 0.00 3.18
899 931 0.531311 GCTTGCTGGCTTTGCTTGTT 60.531 50.000 0.00 0.00 0.00 2.83
900 932 1.068585 GCTTGCTGGCTTTGCTTGT 59.931 52.632 0.00 0.00 0.00 3.16
963 995 3.157087 ACTAATTCCCACACAAGGCAAG 58.843 45.455 0.00 0.00 0.00 4.01
997 1031 2.436646 GGTGTGCCTGTCCATCGG 60.437 66.667 0.00 0.00 0.00 4.18
1033 1067 1.002134 CACGGCCATTCTGGAACCT 60.002 57.895 2.24 0.00 40.96 3.50
1095 1129 2.102553 GTCGAGTACGGAGCAGCC 59.897 66.667 0.00 0.00 40.21 4.85
1149 1183 2.885861 GTCGACGAGGTGGATGCT 59.114 61.111 0.00 0.00 0.00 3.79
1152 1186 2.045634 TCCGTCGACGAGGTGGAT 60.046 61.111 37.65 0.00 43.02 3.41
1211 1245 4.227134 CGGGATCCTCACGCAGGG 62.227 72.222 12.58 0.00 43.67 4.45
1551 1585 1.353804 GCCGTCGTTGTTTTGCTCA 59.646 52.632 0.00 0.00 0.00 4.26
1610 1644 1.746615 ACGTAGTAAGCCTCGCCGA 60.747 57.895 0.00 0.00 41.94 5.54
2044 2078 1.153489 CTGGACGATGGCTGGTCAG 60.153 63.158 0.00 0.00 34.87 3.51
2098 2133 2.750637 CTCAAGCTGGGCTGCCAG 60.751 66.667 22.05 16.22 39.62 4.85
2102 2137 0.963856 TGATTGCTCAAGCTGGGCTG 60.964 55.000 9.05 0.00 46.08 4.85
2113 2148 1.029681 TCCATGCATGCTGATTGCTC 58.970 50.000 21.69 0.00 43.37 4.26
2145 2180 1.583556 TGCATGGAAGAAGAGCCCTA 58.416 50.000 0.00 0.00 0.00 3.53
2156 2191 1.341285 CCACCTGGATCTTGCATGGAA 60.341 52.381 0.00 0.00 37.39 3.53
2207 2242 1.877443 TCGGGCTGTTCAGCTAAAAAC 59.123 47.619 21.46 6.39 34.73 2.43
2233 2325 8.995220 GTAACATGTAGATACAGTGGACAAAAA 58.005 33.333 0.00 0.00 39.92 1.94
2274 2368 6.867519 TCCCAGTGAGAGATATTGTACAAA 57.132 37.500 13.23 2.74 0.00 2.83
2277 2371 7.439655 GTCAAATCCCAGTGAGAGATATTGTAC 59.560 40.741 0.00 0.00 0.00 2.90
2280 2374 5.762218 GGTCAAATCCCAGTGAGAGATATTG 59.238 44.000 0.00 0.55 0.00 1.90
2281 2375 5.163152 GGGTCAAATCCCAGTGAGAGATATT 60.163 44.000 0.00 0.00 46.30 1.28
2343 2890 1.270094 TGAAGTGGTGAGCTGTTACGG 60.270 52.381 0.00 0.00 0.00 4.02
2362 2909 3.020026 CTGGCAGTTTCGCGAGCTG 62.020 63.158 27.46 27.46 30.75 4.24
2380 2927 6.073331 CCAGCAAATTATAGAAGCTAGAGCAC 60.073 42.308 4.01 0.00 45.16 4.40
2424 2971 8.970691 AACTACTGTATTCAATTGTTCAATGC 57.029 30.769 5.13 2.73 0.00 3.56
2446 2993 8.315482 ACCAACAACAATTTAGGTTTTGTAACT 58.685 29.630 0.00 0.00 35.09 2.24
2450 2997 6.592220 GTGACCAACAACAATTTAGGTTTTGT 59.408 34.615 0.00 0.00 37.66 2.83
2491 3066 2.827051 CGAACCGGATGCATGCCAG 61.827 63.158 16.68 6.97 0.00 4.85
2522 3098 3.360867 AGAGCTGCTGAGTGTACTACAT 58.639 45.455 7.01 0.00 0.00 2.29
2524 3100 3.013921 AGAGAGCTGCTGAGTGTACTAC 58.986 50.000 7.01 0.00 0.00 2.73
2525 3101 3.275143 GAGAGAGCTGCTGAGTGTACTA 58.725 50.000 7.01 0.00 0.00 1.82
2526 3102 2.091541 GAGAGAGCTGCTGAGTGTACT 58.908 52.381 7.01 0.00 0.00 2.73
2557 3150 0.384669 GCCTACTACTGTACGGCCAG 59.615 60.000 2.24 1.89 37.18 4.85
2587 3181 4.314440 TCACACACCCTGCCTCGC 62.314 66.667 0.00 0.00 0.00 5.03
2588 3182 2.047844 CTCACACACCCTGCCTCG 60.048 66.667 0.00 0.00 0.00 4.63
2589 3183 1.004440 GACTCACACACCCTGCCTC 60.004 63.158 0.00 0.00 0.00 4.70
2590 3184 1.762522 CTGACTCACACACCCTGCCT 61.763 60.000 0.00 0.00 0.00 4.75
2591 3185 1.302033 CTGACTCACACACCCTGCC 60.302 63.158 0.00 0.00 0.00 4.85
2592 3186 0.179045 AACTGACTCACACACCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
2596 3190 1.670811 CAACCAACTGACTCACACACC 59.329 52.381 0.00 0.00 0.00 4.16
2677 3651 1.141053 AGAACAGAGCCCTTTTCACGT 59.859 47.619 0.00 0.00 32.85 4.49
2688 3662 6.110707 AGTACTAGTGAGAGTAGAACAGAGC 58.889 44.000 5.39 0.00 32.56 4.09
2690 3664 8.365060 ACTAGTACTAGTGAGAGTAGAACAGA 57.635 38.462 30.33 0.00 44.11 3.41
2711 3690 7.495279 AGAAGACACGGACAAGTACTATACTAG 59.505 40.741 0.00 0.00 38.26 2.57
2712 3691 7.334090 AGAAGACACGGACAAGTACTATACTA 58.666 38.462 0.00 0.00 38.26 1.82
2713 3692 6.179040 AGAAGACACGGACAAGTACTATACT 58.821 40.000 0.00 0.00 41.73 2.12
2714 3693 6.434018 AGAAGACACGGACAAGTACTATAC 57.566 41.667 0.00 0.00 0.00 1.47
2715 3694 7.334090 ACTAGAAGACACGGACAAGTACTATA 58.666 38.462 0.00 0.00 0.00 1.31
2716 3695 6.179040 ACTAGAAGACACGGACAAGTACTAT 58.821 40.000 0.00 0.00 0.00 2.12
2870 3859 3.133464 TCCGTACGTACCTGCCGG 61.133 66.667 19.67 16.44 39.98 6.13
2907 3901 1.040339 AGGCCAGGACTAGAAGCGAG 61.040 60.000 5.01 0.00 0.00 5.03
2931 3931 1.608283 GGGAGGAGACAAACAAGTCGG 60.608 57.143 0.00 0.00 43.24 4.79
2957 3957 3.659089 GAACCGCGCTAGGCTCCAA 62.659 63.158 5.56 0.00 40.44 3.53
2976 3976 2.027469 GGTAGGAAAAGAAGCCGAGGAA 60.027 50.000 0.00 0.00 0.00 3.36
2977 3977 1.553704 GGTAGGAAAAGAAGCCGAGGA 59.446 52.381 0.00 0.00 0.00 3.71
2995 3995 5.897250 CCTAATTTAGGCAGGTAAAATGGGT 59.103 40.000 9.51 0.00 39.48 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.