Multiple sequence alignment - TraesCS1B01G225300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G225300 chr1B 100.000 5398 0 0 1 5398 404511263 404516660 0.000000e+00 9969.0
1 TraesCS1B01G225300 chr1B 93.953 215 9 1 408 622 404511293 404511503 6.740000e-84 322.0
2 TraesCS1B01G225300 chr1B 93.953 215 9 1 31 241 404511670 404511884 6.740000e-84 322.0
3 TraesCS1B01G225300 chr1B 83.871 310 23 10 245 527 288192706 288192397 2.480000e-68 270.0
4 TraesCS1B01G225300 chr1B 85.246 122 12 3 31 146 288192518 288192397 2.640000e-23 121.0
5 TraesCS1B01G225300 chr1B 82.456 114 14 4 35 142 631776132 631776245 1.600000e-15 95.3
6 TraesCS1B01G225300 chr1A 90.406 3544 199 67 841 4264 374214015 374217537 0.000000e+00 4530.0
7 TraesCS1B01G225300 chr1A 86.412 942 85 16 4262 5181 374217568 374218488 0.000000e+00 990.0
8 TraesCS1B01G225300 chr1A 89.619 289 20 4 520 799 374213733 374214020 5.140000e-95 359.0
9 TraesCS1B01G225300 chr1A 96.835 158 5 0 5238 5395 374218577 374218734 1.150000e-66 265.0
10 TraesCS1B01G225300 chr1D 90.882 2994 178 30 2453 5393 299928291 299931242 0.000000e+00 3928.0
11 TraesCS1B01G225300 chr1D 89.668 1655 71 42 829 2447 299926608 299928198 0.000000e+00 2017.0
12 TraesCS1B01G225300 chr1D 88.446 251 8 10 524 770 299926377 299926610 3.180000e-72 283.0
13 TraesCS1B01G225300 chr1D 94.059 101 3 1 143 240 299926377 299926477 3.370000e-32 150.0
14 TraesCS1B01G225300 chr3B 93.640 283 15 2 243 523 42720474 42720193 2.330000e-113 420.0
15 TraesCS1B01G225300 chr3B 87.313 268 31 2 259 523 397414532 397414265 2.440000e-78 303.0
16 TraesCS1B01G225300 chr2B 89.753 283 23 4 243 523 177135108 177135386 1.850000e-94 357.0
17 TraesCS1B01G225300 chr2B 84.713 157 20 4 1208 1362 619749392 619749546 2.600000e-33 154.0
18 TraesCS1B01G225300 chr2B 86.957 115 9 3 34 142 765854379 765854265 2.040000e-24 124.0
19 TraesCS1B01G225300 chr5B 89.098 266 26 2 259 521 490730137 490730402 1.450000e-85 327.0
20 TraesCS1B01G225300 chr5B 85.593 118 10 3 29 140 490730286 490730402 3.420000e-22 117.0
21 TraesCS1B01G225300 chr6D 87.313 268 30 3 259 523 14256476 14256210 2.440000e-78 303.0
22 TraesCS1B01G225300 chr3A 86.617 269 30 5 259 523 696273310 696273576 5.290000e-75 292.0
23 TraesCS1B01G225300 chr5D 92.500 160 12 0 5239 5398 227554390 227554549 4.210000e-56 230.0
24 TraesCS1B01G225300 chr7D 89.385 179 19 0 243 421 448936474 448936652 5.440000e-55 226.0
25 TraesCS1B01G225300 chr4A 81.338 284 43 8 248 523 149106785 149107066 7.040000e-54 222.0
26 TraesCS1B01G225300 chr4A 86.957 115 9 3 34 142 149106952 149107066 2.040000e-24 124.0
27 TraesCS1B01G225300 chr4A 80.272 147 16 8 2 142 96861443 96861582 1.240000e-16 99.0
28 TraesCS1B01G225300 chr4D 87.879 165 19 1 243 406 147515963 147515799 5.520000e-45 193.0
29 TraesCS1B01G225300 chrUn 96.429 112 4 0 5287 5398 131924067 131924178 9.230000e-43 185.0
30 TraesCS1B01G225300 chr2D 85.987 157 18 4 1208 1362 524144890 524145044 1.200000e-36 165.0
31 TraesCS1B01G225300 chr2A 85.350 157 19 4 1208 1362 669841286 669841440 5.600000e-35 159.0
32 TraesCS1B01G225300 chr3D 84.348 115 12 3 34 142 53560082 53560196 2.060000e-19 108.0
33 TraesCS1B01G225300 chr3D 82.609 115 14 2 34 142 6470071 6469957 4.450000e-16 97.1
34 TraesCS1B01G225300 chr6A 100.000 33 0 0 790 822 557921417 557921385 1.620000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G225300 chr1B 404511263 404516660 5397 False 9969.0 9969 100.00000 1 5398 1 chr1B.!!$F1 5397
1 TraesCS1B01G225300 chr1B 404511293 404511884 591 False 322.0 322 93.95300 31 622 2 chr1B.!!$F3 591
2 TraesCS1B01G225300 chr1A 374213733 374218734 5001 False 1536.0 4530 90.81800 520 5395 4 chr1A.!!$F1 4875
3 TraesCS1B01G225300 chr1D 299926377 299931242 4865 False 1594.5 3928 90.76375 143 5393 4 chr1D.!!$F1 5250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 0.034337 TAAGTTCTGACCACCGGTGC 59.966 55.000 29.75 16.98 35.25 5.01 F
518 519 0.179004 TTCTGACCACCGGTGCATTT 60.179 50.000 29.75 12.41 35.25 2.32 F
804 1194 0.392595 GAGGACCCCGTAAAGCCTTG 60.393 60.000 0.00 0.00 0.00 3.61 F
2292 2803 0.613260 TCTACGCATGGAGCTTGGTT 59.387 50.000 0.00 0.00 42.61 3.67 F
2491 3089 2.151202 CCTGTGTACCAAGCGTCAAAT 58.849 47.619 0.00 0.00 0.00 2.32 F
3918 4560 0.033796 CACCATTCCTGTGGGCATCT 60.034 55.000 0.00 0.00 43.77 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 2160 1.561542 AGAAACAGCATGGGGACTAGG 59.438 52.381 0.00 0.0 43.62 3.02 R
1952 2432 2.037251 TGAGAGGAAGGAAAGTTGACCG 59.963 50.000 0.00 0.0 0.00 4.79 R
2693 3320 1.809547 CCAACCATGCACGTGTGATTA 59.190 47.619 18.38 0.0 0.00 1.75 R
3232 3872 0.392461 GATCACGCTGTTAGGCCCAA 60.392 55.000 0.00 0.0 0.00 4.12 R
4382 5077 0.401395 TCCCCAGGACCACAAGACTT 60.401 55.000 0.00 0.0 0.00 3.01 R
5020 5744 0.036294 GTAGGTTGTCTGCCCTGTCC 60.036 60.000 0.00 0.0 32.08 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.709834 TGGAGCCCACATAGTCAGA 57.290 52.632 0.00 0.00 0.00 3.27
19 20 1.489481 TGGAGCCCACATAGTCAGAG 58.511 55.000 0.00 0.00 0.00 3.35
20 21 1.007118 TGGAGCCCACATAGTCAGAGA 59.993 52.381 0.00 0.00 0.00 3.10
21 22 2.111384 GGAGCCCACATAGTCAGAGAA 58.889 52.381 0.00 0.00 0.00 2.87
22 23 2.501723 GGAGCCCACATAGTCAGAGAAA 59.498 50.000 0.00 0.00 0.00 2.52
23 24 3.055094 GGAGCCCACATAGTCAGAGAAAA 60.055 47.826 0.00 0.00 0.00 2.29
24 25 4.565652 GGAGCCCACATAGTCAGAGAAAAA 60.566 45.833 0.00 0.00 0.00 1.94
166 167 2.563471 AAAGCTACGAGTAGGAAGCG 57.437 50.000 11.69 0.00 37.83 4.68
167 168 1.461559 AAGCTACGAGTAGGAAGCGT 58.538 50.000 11.69 0.00 41.58 5.07
168 169 1.461559 AGCTACGAGTAGGAAGCGTT 58.538 50.000 11.69 0.00 39.24 4.84
169 170 1.401199 AGCTACGAGTAGGAAGCGTTC 59.599 52.381 11.69 0.00 39.24 3.95
170 171 1.855223 GCTACGAGTAGGAAGCGTTCG 60.855 57.143 11.69 0.00 39.24 3.95
171 172 0.097674 TACGAGTAGGAAGCGTTCGC 59.902 55.000 9.24 9.24 39.24 4.70
172 173 2.215604 CGAGTAGGAAGCGTTCGCG 61.216 63.158 11.40 0.00 44.73 5.87
173 174 1.136147 GAGTAGGAAGCGTTCGCGA 59.864 57.895 3.71 3.71 44.71 5.87
174 175 0.862283 GAGTAGGAAGCGTTCGCGAG 60.862 60.000 9.59 0.00 44.71 5.03
175 176 1.136147 GTAGGAAGCGTTCGCGAGA 59.864 57.895 9.59 0.00 44.71 4.04
176 177 0.862283 GTAGGAAGCGTTCGCGAGAG 60.862 60.000 9.59 8.82 44.71 3.20
177 178 1.022982 TAGGAAGCGTTCGCGAGAGA 61.023 55.000 9.59 0.00 44.71 3.10
178 179 1.443872 GGAAGCGTTCGCGAGAGAA 60.444 57.895 9.59 0.00 44.71 2.87
179 180 1.007336 GGAAGCGTTCGCGAGAGAAA 61.007 55.000 9.59 0.00 44.71 2.52
180 181 0.363846 GAAGCGTTCGCGAGAGAAAG 59.636 55.000 9.59 0.00 44.71 2.62
181 182 2.392206 GCGTTCGCGAGAGAAAGC 59.608 61.111 9.59 4.61 45.11 3.51
182 183 3.842602 CGTTCGCGAGAGAAAGCA 58.157 55.556 9.59 0.00 44.71 3.91
183 184 1.698898 CGTTCGCGAGAGAAAGCAG 59.301 57.895 9.59 0.00 44.71 4.24
184 185 0.729478 CGTTCGCGAGAGAAAGCAGA 60.729 55.000 9.59 0.00 44.71 4.26
185 186 0.988439 GTTCGCGAGAGAAAGCAGAG 59.012 55.000 9.59 0.00 43.69 3.35
186 187 0.109086 TTCGCGAGAGAAAGCAGAGG 60.109 55.000 9.59 0.00 43.69 3.69
187 188 2.164026 CGCGAGAGAAAGCAGAGGC 61.164 63.158 0.00 0.00 41.61 4.70
198 199 2.811317 CAGAGGCGCGTGACCTTC 60.811 66.667 7.63 0.00 37.77 3.46
199 200 4.070552 AGAGGCGCGTGACCTTCC 62.071 66.667 7.63 0.00 37.77 3.46
200 201 4.373116 GAGGCGCGTGACCTTCCA 62.373 66.667 7.63 0.00 37.77 3.53
201 202 4.681978 AGGCGCGTGACCTTCCAC 62.682 66.667 8.43 0.00 31.87 4.02
202 203 4.681978 GGCGCGTGACCTTCCACT 62.682 66.667 8.43 0.00 35.02 4.00
203 204 2.665185 GCGCGTGACCTTCCACTT 60.665 61.111 8.43 0.00 35.02 3.16
204 205 2.251642 GCGCGTGACCTTCCACTTT 61.252 57.895 8.43 0.00 35.02 2.66
205 206 0.947180 GCGCGTGACCTTCCACTTTA 60.947 55.000 8.43 0.00 35.02 1.85
206 207 1.068474 CGCGTGACCTTCCACTTTAG 58.932 55.000 0.00 0.00 35.02 1.85
207 208 0.796927 GCGTGACCTTCCACTTTAGC 59.203 55.000 0.00 0.00 35.02 3.09
208 209 1.876416 GCGTGACCTTCCACTTTAGCA 60.876 52.381 0.00 0.00 35.02 3.49
209 210 2.489971 CGTGACCTTCCACTTTAGCAA 58.510 47.619 0.00 0.00 35.02 3.91
210 211 3.074412 CGTGACCTTCCACTTTAGCAAT 58.926 45.455 0.00 0.00 35.02 3.56
211 212 3.125316 CGTGACCTTCCACTTTAGCAATC 59.875 47.826 0.00 0.00 35.02 2.67
212 213 3.440522 GTGACCTTCCACTTTAGCAATCC 59.559 47.826 0.00 0.00 34.38 3.01
213 214 3.073798 TGACCTTCCACTTTAGCAATCCA 59.926 43.478 0.00 0.00 0.00 3.41
214 215 3.421844 ACCTTCCACTTTAGCAATCCAC 58.578 45.455 0.00 0.00 0.00 4.02
215 216 2.755103 CCTTCCACTTTAGCAATCCACC 59.245 50.000 0.00 0.00 0.00 4.61
216 217 3.420893 CTTCCACTTTAGCAATCCACCA 58.579 45.455 0.00 0.00 0.00 4.17
217 218 2.790433 TCCACTTTAGCAATCCACCAC 58.210 47.619 0.00 0.00 0.00 4.16
218 219 1.468520 CCACTTTAGCAATCCACCACG 59.531 52.381 0.00 0.00 0.00 4.94
219 220 1.468520 CACTTTAGCAATCCACCACGG 59.531 52.381 0.00 0.00 0.00 4.94
220 221 1.094785 CTTTAGCAATCCACCACGGG 58.905 55.000 0.00 0.00 34.36 5.28
221 222 0.402504 TTTAGCAATCCACCACGGGT 59.597 50.000 0.00 0.00 35.62 5.28
222 223 0.035820 TTAGCAATCCACCACGGGTC 60.036 55.000 0.00 0.00 31.02 4.46
223 224 2.233605 TAGCAATCCACCACGGGTCG 62.234 60.000 0.00 0.00 31.02 4.79
224 225 3.124921 CAATCCACCACGGGTCGC 61.125 66.667 0.00 0.00 31.02 5.19
225 226 3.632080 AATCCACCACGGGTCGCA 61.632 61.111 0.00 0.00 31.02 5.10
226 227 3.894547 AATCCACCACGGGTCGCAC 62.895 63.158 0.00 0.00 31.02 5.34
253 254 4.593033 CCCCCTACTAGCGCTACA 57.407 61.111 14.45 3.26 0.00 2.74
254 255 2.342478 CCCCCTACTAGCGCTACAG 58.658 63.158 14.45 13.21 0.00 2.74
255 256 1.660917 CCCCTACTAGCGCTACAGC 59.339 63.158 14.45 0.00 37.78 4.40
257 258 1.033574 CCCTACTAGCGCTACAGCTT 58.966 55.000 14.45 0.00 46.80 3.74
258 259 1.409427 CCCTACTAGCGCTACAGCTTT 59.591 52.381 14.45 0.00 46.80 3.51
259 260 2.464865 CCTACTAGCGCTACAGCTTTG 58.535 52.381 14.45 4.42 46.80 2.77
260 261 2.464865 CTACTAGCGCTACAGCTTTGG 58.535 52.381 14.45 3.61 46.80 3.28
261 262 0.608640 ACTAGCGCTACAGCTTTGGT 59.391 50.000 14.45 4.32 46.80 3.67
262 263 1.002087 ACTAGCGCTACAGCTTTGGTT 59.998 47.619 14.45 0.00 46.80 3.67
263 264 1.661112 CTAGCGCTACAGCTTTGGTTC 59.339 52.381 14.45 0.00 46.80 3.62
264 265 1.132640 GCGCTACAGCTTTGGTTCG 59.867 57.895 0.00 0.00 39.32 3.95
265 266 1.289109 GCGCTACAGCTTTGGTTCGA 61.289 55.000 0.00 0.00 39.32 3.71
266 267 0.438830 CGCTACAGCTTTGGTTCGAC 59.561 55.000 0.00 0.00 39.32 4.20
267 268 1.797025 GCTACAGCTTTGGTTCGACT 58.203 50.000 0.00 0.00 38.21 4.18
268 269 1.727335 GCTACAGCTTTGGTTCGACTC 59.273 52.381 0.00 0.00 38.21 3.36
269 270 2.338500 CTACAGCTTTGGTTCGACTCC 58.662 52.381 0.00 0.00 0.00 3.85
270 271 0.250338 ACAGCTTTGGTTCGACTCCC 60.250 55.000 3.76 0.00 0.00 4.30
271 272 0.955919 CAGCTTTGGTTCGACTCCCC 60.956 60.000 3.76 0.00 0.00 4.81
272 273 1.072505 GCTTTGGTTCGACTCCCCA 59.927 57.895 3.76 0.00 0.00 4.96
273 274 1.235281 GCTTTGGTTCGACTCCCCAC 61.235 60.000 3.76 0.00 0.00 4.61
274 275 0.107831 CTTTGGTTCGACTCCCCACA 59.892 55.000 3.76 0.00 0.00 4.17
275 276 0.107831 TTTGGTTCGACTCCCCACAG 59.892 55.000 3.76 0.00 0.00 3.66
276 277 1.764571 TTGGTTCGACTCCCCACAGG 61.765 60.000 3.76 0.00 0.00 4.00
277 278 2.047179 GTTCGACTCCCCACAGGC 60.047 66.667 0.00 0.00 34.51 4.85
282 283 4.715130 ACTCCCCACAGGCGCCTA 62.715 66.667 32.30 12.06 34.51 3.93
283 284 3.399181 CTCCCCACAGGCGCCTAA 61.399 66.667 32.30 9.56 34.51 2.69
284 285 2.690881 TCCCCACAGGCGCCTAAT 60.691 61.111 32.30 18.51 34.51 1.73
285 286 2.270874 CTCCCCACAGGCGCCTAATT 62.271 60.000 32.30 14.17 34.51 1.40
286 287 1.379843 CCCCACAGGCGCCTAATTT 60.380 57.895 32.30 11.23 0.00 1.82
287 288 0.970427 CCCCACAGGCGCCTAATTTT 60.970 55.000 32.30 8.35 0.00 1.82
288 289 1.683629 CCCCACAGGCGCCTAATTTTA 60.684 52.381 32.30 0.00 0.00 1.52
289 290 2.306847 CCCACAGGCGCCTAATTTTAT 58.693 47.619 32.30 0.19 0.00 1.40
290 291 2.693074 CCCACAGGCGCCTAATTTTATT 59.307 45.455 32.30 0.00 0.00 1.40
291 292 3.243401 CCCACAGGCGCCTAATTTTATTC 60.243 47.826 32.30 0.00 0.00 1.75
292 293 3.548014 CCACAGGCGCCTAATTTTATTCG 60.548 47.826 32.30 15.39 0.00 3.34
293 294 2.032924 ACAGGCGCCTAATTTTATTCGC 59.967 45.455 32.30 0.00 41.55 4.70
295 296 2.046283 GCGCCTAATTTTATTCGCCC 57.954 50.000 0.00 0.00 37.02 6.13
296 297 1.335597 GCGCCTAATTTTATTCGCCCC 60.336 52.381 0.00 0.00 37.02 5.80
297 298 2.227194 CGCCTAATTTTATTCGCCCCT 58.773 47.619 0.00 0.00 0.00 4.79
298 299 3.404899 CGCCTAATTTTATTCGCCCCTA 58.595 45.455 0.00 0.00 0.00 3.53
299 300 3.187842 CGCCTAATTTTATTCGCCCCTAC 59.812 47.826 0.00 0.00 0.00 3.18
300 301 4.395625 GCCTAATTTTATTCGCCCCTACT 58.604 43.478 0.00 0.00 0.00 2.57
301 302 4.454847 GCCTAATTTTATTCGCCCCTACTC 59.545 45.833 0.00 0.00 0.00 2.59
302 303 5.001874 CCTAATTTTATTCGCCCCTACTCC 58.998 45.833 0.00 0.00 0.00 3.85
303 304 4.790718 AATTTTATTCGCCCCTACTCCT 57.209 40.909 0.00 0.00 0.00 3.69
304 305 4.790718 ATTTTATTCGCCCCTACTCCTT 57.209 40.909 0.00 0.00 0.00 3.36
305 306 4.579647 TTTTATTCGCCCCTACTCCTTT 57.420 40.909 0.00 0.00 0.00 3.11
306 307 3.832615 TTATTCGCCCCTACTCCTTTC 57.167 47.619 0.00 0.00 0.00 2.62
307 308 1.880941 ATTCGCCCCTACTCCTTTCT 58.119 50.000 0.00 0.00 0.00 2.52
308 309 1.652947 TTCGCCCCTACTCCTTTCTT 58.347 50.000 0.00 0.00 0.00 2.52
309 310 1.192428 TCGCCCCTACTCCTTTCTTC 58.808 55.000 0.00 0.00 0.00 2.87
310 311 0.178301 CGCCCCTACTCCTTTCTTCC 59.822 60.000 0.00 0.00 0.00 3.46
311 312 1.286248 GCCCCTACTCCTTTCTTCCA 58.714 55.000 0.00 0.00 0.00 3.53
312 313 1.065345 GCCCCTACTCCTTTCTTCCAC 60.065 57.143 0.00 0.00 0.00 4.02
313 314 1.560146 CCCCTACTCCTTTCTTCCACC 59.440 57.143 0.00 0.00 0.00 4.61
314 315 1.560146 CCCTACTCCTTTCTTCCACCC 59.440 57.143 0.00 0.00 0.00 4.61
315 316 2.266279 CCTACTCCTTTCTTCCACCCA 58.734 52.381 0.00 0.00 0.00 4.51
316 317 2.027100 CCTACTCCTTTCTTCCACCCAC 60.027 54.545 0.00 0.00 0.00 4.61
317 318 1.821088 ACTCCTTTCTTCCACCCACT 58.179 50.000 0.00 0.00 0.00 4.00
318 319 1.421646 ACTCCTTTCTTCCACCCACTG 59.578 52.381 0.00 0.00 0.00 3.66
319 320 1.699634 CTCCTTTCTTCCACCCACTGA 59.300 52.381 0.00 0.00 0.00 3.41
320 321 1.420138 TCCTTTCTTCCACCCACTGAC 59.580 52.381 0.00 0.00 0.00 3.51
321 322 1.142870 CCTTTCTTCCACCCACTGACA 59.857 52.381 0.00 0.00 0.00 3.58
322 323 2.224867 CCTTTCTTCCACCCACTGACAT 60.225 50.000 0.00 0.00 0.00 3.06
323 324 2.566833 TTCTTCCACCCACTGACATG 57.433 50.000 0.00 0.00 0.00 3.21
324 325 1.434188 TCTTCCACCCACTGACATGT 58.566 50.000 0.00 0.00 0.00 3.21
325 326 1.072173 TCTTCCACCCACTGACATGTG 59.928 52.381 1.15 0.00 37.66 3.21
331 332 2.361610 CACTGACATGTGGGGCCC 60.362 66.667 18.17 18.17 34.56 5.80
332 333 2.858476 ACTGACATGTGGGGCCCA 60.858 61.111 24.76 24.76 0.00 5.36
341 342 3.739922 TGGGGCCCACATAGTCAG 58.260 61.111 24.76 0.00 0.00 3.51
342 343 1.082019 TGGGGCCCACATAGTCAGA 59.918 57.895 24.76 0.00 0.00 3.27
343 344 0.982852 TGGGGCCCACATAGTCAGAG 60.983 60.000 24.76 0.00 0.00 3.35
344 345 0.691078 GGGGCCCACATAGTCAGAGA 60.691 60.000 26.86 0.00 0.00 3.10
345 346 0.755686 GGGCCCACATAGTCAGAGAG 59.244 60.000 19.95 0.00 0.00 3.20
346 347 1.689575 GGGCCCACATAGTCAGAGAGA 60.690 57.143 19.95 0.00 0.00 3.10
347 348 2.111384 GGCCCACATAGTCAGAGAGAA 58.889 52.381 0.00 0.00 0.00 2.87
348 349 2.501723 GGCCCACATAGTCAGAGAGAAA 59.498 50.000 0.00 0.00 0.00 2.52
349 350 3.055094 GGCCCACATAGTCAGAGAGAAAA 60.055 47.826 0.00 0.00 0.00 2.29
350 351 4.565652 GGCCCACATAGTCAGAGAGAAAAA 60.566 45.833 0.00 0.00 0.00 1.94
364 365 4.892002 AAAAACGGACGAGGCCTT 57.108 50.000 6.77 0.00 0.00 4.35
365 366 2.625375 AAAAACGGACGAGGCCTTC 58.375 52.632 6.77 0.00 0.00 3.46
366 367 0.108019 AAAAACGGACGAGGCCTTCT 59.892 50.000 6.77 0.00 0.00 2.85
367 368 0.108019 AAAACGGACGAGGCCTTCTT 59.892 50.000 6.77 0.00 0.00 2.52
368 369 0.108019 AAACGGACGAGGCCTTCTTT 59.892 50.000 6.77 0.00 0.00 2.52
369 370 0.602905 AACGGACGAGGCCTTCTTTG 60.603 55.000 6.77 0.00 0.00 2.77
370 371 1.292223 CGGACGAGGCCTTCTTTGA 59.708 57.895 6.77 0.00 0.00 2.69
371 372 1.014564 CGGACGAGGCCTTCTTTGAC 61.015 60.000 6.77 0.00 0.00 3.18
372 373 1.014564 GGACGAGGCCTTCTTTGACG 61.015 60.000 6.77 6.44 0.00 4.35
373 374 1.004918 ACGAGGCCTTCTTTGACGG 60.005 57.895 6.77 0.00 0.00 4.79
374 375 1.741770 CGAGGCCTTCTTTGACGGG 60.742 63.158 6.77 0.00 0.00 5.28
375 376 1.375326 GAGGCCTTCTTTGACGGGT 59.625 57.895 6.77 0.00 0.00 5.28
376 377 0.673956 GAGGCCTTCTTTGACGGGTC 60.674 60.000 6.77 0.00 0.00 4.46
377 378 1.072505 GGCCTTCTTTGACGGGTCA 59.927 57.895 0.00 0.00 37.91 4.02
378 379 0.536460 GGCCTTCTTTGACGGGTCAA 60.536 55.000 10.04 10.04 46.72 3.18
392 393 7.114866 TGACGGGTCAAATAGATGTAATACA 57.885 36.000 0.00 0.00 36.53 2.29
393 394 7.557724 TGACGGGTCAAATAGATGTAATACAA 58.442 34.615 0.00 0.00 36.53 2.41
394 395 8.041919 TGACGGGTCAAATAGATGTAATACAAA 58.958 33.333 0.00 0.00 36.53 2.83
395 396 8.433421 ACGGGTCAAATAGATGTAATACAAAG 57.567 34.615 0.00 0.00 0.00 2.77
396 397 7.012044 ACGGGTCAAATAGATGTAATACAAAGC 59.988 37.037 0.00 0.00 0.00 3.51
397 398 7.226720 CGGGTCAAATAGATGTAATACAAAGCT 59.773 37.037 0.00 0.00 0.00 3.74
398 399 9.555727 GGGTCAAATAGATGTAATACAAAGCTA 57.444 33.333 0.00 0.80 0.00 3.32
407 408 9.847706 AGATGTAATACAAAGCTATACGATCTG 57.152 33.333 0.00 0.00 0.00 2.90
408 409 9.841880 GATGTAATACAAAGCTATACGATCTGA 57.158 33.333 0.00 0.00 0.00 3.27
413 414 9.847706 AATACAAAGCTATACGATCTGATAGTG 57.152 33.333 12.83 0.00 0.00 2.74
414 415 7.511959 ACAAAGCTATACGATCTGATAGTGA 57.488 36.000 12.83 1.47 0.00 3.41
415 416 7.364200 ACAAAGCTATACGATCTGATAGTGAC 58.636 38.462 12.83 1.27 0.00 3.67
416 417 6.503589 AAGCTATACGATCTGATAGTGACC 57.496 41.667 12.83 0.69 0.00 4.02
417 418 5.561679 AGCTATACGATCTGATAGTGACCA 58.438 41.667 12.83 0.00 0.00 4.02
418 419 6.184068 AGCTATACGATCTGATAGTGACCAT 58.816 40.000 12.83 2.25 0.00 3.55
419 420 7.339482 AGCTATACGATCTGATAGTGACCATA 58.661 38.462 12.83 3.19 0.00 2.74
420 421 7.996066 AGCTATACGATCTGATAGTGACCATAT 59.004 37.037 12.83 1.31 0.00 1.78
421 422 9.274206 GCTATACGATCTGATAGTGACCATATA 57.726 37.037 12.83 2.29 0.00 0.86
425 426 8.581253 ACGATCTGATAGTGACCATATAATCA 57.419 34.615 2.47 0.00 0.00 2.57
426 427 8.462811 ACGATCTGATAGTGACCATATAATCAC 58.537 37.037 2.47 9.52 44.64 3.06
427 428 7.918033 CGATCTGATAGTGACCATATAATCACC 59.082 40.741 12.67 2.32 45.28 4.02
428 429 8.907829 ATCTGATAGTGACCATATAATCACCT 57.092 34.615 12.67 3.92 45.28 4.00
429 430 8.354711 TCTGATAGTGACCATATAATCACCTC 57.645 38.462 12.67 10.93 45.28 3.85
430 431 7.950124 TCTGATAGTGACCATATAATCACCTCA 59.050 37.037 12.67 13.68 45.28 3.86
431 432 8.491045 TGATAGTGACCATATAATCACCTCAA 57.509 34.615 12.67 1.20 45.28 3.02
432 433 8.367911 TGATAGTGACCATATAATCACCTCAAC 58.632 37.037 12.67 4.53 45.28 3.18
433 434 6.560003 AGTGACCATATAATCACCTCAACA 57.440 37.500 12.67 0.00 45.28 3.33
434 435 6.349300 AGTGACCATATAATCACCTCAACAC 58.651 40.000 12.67 0.00 45.28 3.32
435 436 5.234329 GTGACCATATAATCACCTCAACACG 59.766 44.000 7.12 0.00 39.49 4.49
436 437 5.105106 TGACCATATAATCACCTCAACACGT 60.105 40.000 0.00 0.00 0.00 4.49
437 438 6.097129 TGACCATATAATCACCTCAACACGTA 59.903 38.462 0.00 0.00 0.00 3.57
438 439 7.062749 ACCATATAATCACCTCAACACGTAT 57.937 36.000 0.00 0.00 0.00 3.06
439 440 8.185506 ACCATATAATCACCTCAACACGTATA 57.814 34.615 0.00 0.00 0.00 1.47
440 441 8.812972 ACCATATAATCACCTCAACACGTATAT 58.187 33.333 0.00 0.00 0.00 0.86
447 448 8.988064 ATCACCTCAACACGTATATAATGATC 57.012 34.615 0.00 0.00 0.00 2.92
448 449 7.081976 TCACCTCAACACGTATATAATGATCG 58.918 38.462 0.00 0.00 0.00 3.69
449 450 6.861572 CACCTCAACACGTATATAATGATCGT 59.138 38.462 0.00 0.00 35.12 3.73
450 451 8.019094 CACCTCAACACGTATATAATGATCGTA 58.981 37.037 0.00 0.00 33.49 3.43
451 452 8.737175 ACCTCAACACGTATATAATGATCGTAT 58.263 33.333 0.00 0.00 33.49 3.06
452 453 9.569167 CCTCAACACGTATATAATGATCGTATT 57.431 33.333 0.00 0.00 33.49 1.89
486 487 7.816640 TCTTAAATACATTGACCAAAGTGAGC 58.183 34.615 1.41 0.00 0.00 4.26
487 488 4.685169 AATACATTGACCAAAGTGAGCG 57.315 40.909 1.41 0.00 0.00 5.03
488 489 1.967319 ACATTGACCAAAGTGAGCGT 58.033 45.000 0.00 0.00 0.00 5.07
489 490 3.120321 ACATTGACCAAAGTGAGCGTA 57.880 42.857 0.00 0.00 0.00 4.42
490 491 3.674997 ACATTGACCAAAGTGAGCGTAT 58.325 40.909 0.00 0.00 0.00 3.06
491 492 4.827692 ACATTGACCAAAGTGAGCGTATA 58.172 39.130 0.00 0.00 0.00 1.47
492 493 4.630069 ACATTGACCAAAGTGAGCGTATAC 59.370 41.667 0.00 0.00 0.00 1.47
493 494 2.871133 TGACCAAAGTGAGCGTATACG 58.129 47.619 20.87 20.87 43.27 3.06
494 495 2.488937 TGACCAAAGTGAGCGTATACGA 59.511 45.455 28.66 5.18 43.02 3.43
495 496 3.129813 TGACCAAAGTGAGCGTATACGAT 59.870 43.478 28.66 23.36 43.02 3.73
496 497 4.336153 TGACCAAAGTGAGCGTATACGATA 59.664 41.667 28.66 10.62 43.02 2.92
497 498 5.163632 TGACCAAAGTGAGCGTATACGATAA 60.164 40.000 28.66 13.55 43.02 1.75
498 499 5.279384 ACCAAAGTGAGCGTATACGATAAG 58.721 41.667 28.66 6.01 43.02 1.73
499 500 5.163581 ACCAAAGTGAGCGTATACGATAAGT 60.164 40.000 28.66 15.93 43.02 2.24
500 501 5.747197 CCAAAGTGAGCGTATACGATAAGTT 59.253 40.000 28.66 20.92 43.02 2.66
501 502 6.074994 CCAAAGTGAGCGTATACGATAAGTTC 60.075 42.308 28.66 10.62 43.02 3.01
502 503 6.374565 AAGTGAGCGTATACGATAAGTTCT 57.625 37.500 28.66 13.66 43.02 3.01
503 504 5.749620 AGTGAGCGTATACGATAAGTTCTG 58.250 41.667 28.66 0.00 43.02 3.02
504 505 5.526479 AGTGAGCGTATACGATAAGTTCTGA 59.474 40.000 28.66 5.71 43.02 3.27
505 506 5.620417 GTGAGCGTATACGATAAGTTCTGAC 59.380 44.000 28.66 13.80 43.02 3.51
506 507 5.105834 AGCGTATACGATAAGTTCTGACC 57.894 43.478 28.66 6.05 43.02 4.02
507 508 4.577693 AGCGTATACGATAAGTTCTGACCA 59.422 41.667 28.66 0.00 43.02 4.02
508 509 4.674211 GCGTATACGATAAGTTCTGACCAC 59.326 45.833 28.66 1.20 43.02 4.16
509 510 5.210715 CGTATACGATAAGTTCTGACCACC 58.789 45.833 20.58 0.00 43.02 4.61
510 511 2.649331 ACGATAAGTTCTGACCACCG 57.351 50.000 0.00 0.00 0.00 4.94
511 512 1.203994 ACGATAAGTTCTGACCACCGG 59.796 52.381 0.00 0.00 0.00 5.28
512 513 1.203994 CGATAAGTTCTGACCACCGGT 59.796 52.381 0.00 0.00 39.44 5.28
513 514 2.618053 GATAAGTTCTGACCACCGGTG 58.382 52.381 28.26 28.26 35.25 4.94
514 515 0.034337 TAAGTTCTGACCACCGGTGC 59.966 55.000 29.75 16.98 35.25 5.01
515 516 1.978455 AAGTTCTGACCACCGGTGCA 61.978 55.000 29.75 20.71 35.25 4.57
516 517 1.302511 GTTCTGACCACCGGTGCAT 60.303 57.895 29.75 19.10 35.25 3.96
517 518 0.889186 GTTCTGACCACCGGTGCATT 60.889 55.000 29.75 15.12 35.25 3.56
518 519 0.179004 TTCTGACCACCGGTGCATTT 60.179 50.000 29.75 12.41 35.25 2.32
522 523 1.202830 TGACCACCGGTGCATTTTACT 60.203 47.619 29.75 2.67 35.25 2.24
800 1190 2.186125 CGGAGGACCCCGTAAAGC 59.814 66.667 11.95 0.00 44.23 3.51
801 1191 2.588439 GGAGGACCCCGTAAAGCC 59.412 66.667 0.00 0.00 0.00 4.35
802 1192 1.993948 GGAGGACCCCGTAAAGCCT 60.994 63.158 0.00 0.00 0.00 4.58
803 1193 1.559965 GGAGGACCCCGTAAAGCCTT 61.560 60.000 0.00 0.00 0.00 4.35
804 1194 0.392595 GAGGACCCCGTAAAGCCTTG 60.393 60.000 0.00 0.00 0.00 3.61
805 1195 1.131928 AGGACCCCGTAAAGCCTTGT 61.132 55.000 0.00 0.00 0.00 3.16
806 1196 0.614812 GGACCCCGTAAAGCCTTGTA 59.385 55.000 0.00 0.00 0.00 2.41
807 1197 1.211212 GGACCCCGTAAAGCCTTGTAT 59.789 52.381 0.00 0.00 0.00 2.29
808 1198 2.285977 GACCCCGTAAAGCCTTGTATG 58.714 52.381 0.00 0.00 0.00 2.39
809 1199 1.631898 ACCCCGTAAAGCCTTGTATGT 59.368 47.619 0.00 0.00 0.00 2.29
810 1200 2.285977 CCCCGTAAAGCCTTGTATGTC 58.714 52.381 0.00 0.00 0.00 3.06
811 1201 2.093128 CCCCGTAAAGCCTTGTATGTCT 60.093 50.000 0.00 0.00 0.00 3.41
812 1202 3.133362 CCCCGTAAAGCCTTGTATGTCTA 59.867 47.826 0.00 0.00 0.00 2.59
813 1203 4.369182 CCCGTAAAGCCTTGTATGTCTAG 58.631 47.826 0.00 0.00 0.00 2.43
814 1204 4.369182 CCGTAAAGCCTTGTATGTCTAGG 58.631 47.826 0.00 0.00 40.98 3.02
815 1205 4.098960 CCGTAAAGCCTTGTATGTCTAGGA 59.901 45.833 0.00 0.00 40.60 2.94
816 1206 5.221461 CCGTAAAGCCTTGTATGTCTAGGAT 60.221 44.000 0.00 0.00 40.60 3.24
817 1207 6.281405 CGTAAAGCCTTGTATGTCTAGGATT 58.719 40.000 0.00 0.00 46.11 3.01
818 1208 7.431249 CGTAAAGCCTTGTATGTCTAGGATTA 58.569 38.462 0.00 0.00 44.17 1.75
819 1209 8.088981 CGTAAAGCCTTGTATGTCTAGGATTAT 58.911 37.037 0.00 0.00 44.17 1.28
820 1210 9.780186 GTAAAGCCTTGTATGTCTAGGATTATT 57.220 33.333 0.00 0.00 44.17 1.40
821 1211 8.682936 AAAGCCTTGTATGTCTAGGATTATTG 57.317 34.615 0.00 0.00 44.17 1.90
822 1212 6.234177 AGCCTTGTATGTCTAGGATTATTGC 58.766 40.000 0.00 0.00 40.60 3.56
823 1213 5.412904 GCCTTGTATGTCTAGGATTATTGCC 59.587 44.000 0.00 0.00 40.60 4.52
824 1214 5.940470 CCTTGTATGTCTAGGATTATTGCCC 59.060 44.000 0.00 0.00 40.60 5.36
825 1215 5.147330 TGTATGTCTAGGATTATTGCCCG 57.853 43.478 0.00 0.00 0.00 6.13
826 1216 3.703001 ATGTCTAGGATTATTGCCCGG 57.297 47.619 0.00 0.00 0.00 5.73
827 1217 2.684943 TGTCTAGGATTATTGCCCGGA 58.315 47.619 0.73 0.00 0.00 5.14
828 1218 2.632996 TGTCTAGGATTATTGCCCGGAG 59.367 50.000 0.73 0.00 0.00 4.63
1563 2004 2.731217 CAAGCGTTTCTTTCCTTGTGG 58.269 47.619 0.00 0.00 31.27 4.17
1567 2015 0.679505 GTTTCTTTCCTTGTGGGGGC 59.320 55.000 0.00 0.00 35.33 5.80
1598 2046 0.669625 CGAAGACGAGGGGGTTGTTC 60.670 60.000 0.00 0.00 42.66 3.18
1672 2120 1.521681 GGCCACCTGCAGATACGAC 60.522 63.158 17.39 0.00 43.89 4.34
1677 2125 3.612004 GCCACCTGCAGATACGACTATAC 60.612 52.174 17.39 0.00 40.77 1.47
1678 2126 3.057456 CCACCTGCAGATACGACTATACC 60.057 52.174 17.39 0.00 0.00 2.73
1681 2129 5.122554 CACCTGCAGATACGACTATACCTAG 59.877 48.000 17.39 0.00 0.00 3.02
1706 2154 6.228616 ACTAGGAAGCTTCTGGAGTAATTC 57.771 41.667 25.05 5.26 0.00 2.17
1712 2160 7.608376 AGGAAGCTTCTGGAGTAATTCTTTTAC 59.392 37.037 25.05 2.79 0.00 2.01
1719 2190 8.075761 TCTGGAGTAATTCTTTTACCTAGTCC 57.924 38.462 0.00 0.00 34.12 3.85
1730 2201 1.372501 ACCTAGTCCCCATGCTGTTT 58.627 50.000 0.00 0.00 0.00 2.83
1731 2202 1.282157 ACCTAGTCCCCATGCTGTTTC 59.718 52.381 0.00 0.00 0.00 2.78
1777 2250 1.491670 CAGACGGGATATTCAGTGCG 58.508 55.000 0.00 0.00 0.00 5.34
1835 2311 1.292061 TCACCGTTGTGTGCTGTTAC 58.708 50.000 0.00 0.00 43.26 2.50
1837 2313 2.101082 TCACCGTTGTGTGCTGTTACTA 59.899 45.455 0.00 0.00 43.26 1.82
1839 2315 3.496884 CACCGTTGTGTGCTGTTACTAAT 59.503 43.478 0.00 0.00 37.72 1.73
1851 2329 8.967918 TGTGCTGTTACTAATTAGTACTCTCAT 58.032 33.333 22.22 0.00 38.43 2.90
1921 2401 4.469657 AGTATTTGTTTGGTGGCTTCTCA 58.530 39.130 0.00 0.00 0.00 3.27
1928 2408 5.815581 TGTTTGGTGGCTTCTCATATAAGT 58.184 37.500 0.00 0.00 0.00 2.24
1952 2432 3.078837 TCGGTTGGTTTCCAATTAGAGC 58.921 45.455 4.51 0.00 45.80 4.09
1972 2452 2.689646 CGGTCAACTTTCCTTCCTCTC 58.310 52.381 0.00 0.00 0.00 3.20
1989 2469 9.578439 CCTTCCTCTCAATAAAATTGATTTCAC 57.422 33.333 2.98 0.00 32.27 3.18
2022 2502 3.691575 TGGATATGGTCAAAGCCGAAAA 58.308 40.909 0.00 0.00 0.00 2.29
2051 2538 1.262417 TGAACCATGACTACGCTCCA 58.738 50.000 0.00 0.00 0.00 3.86
2054 2541 2.604046 ACCATGACTACGCTCCAATC 57.396 50.000 0.00 0.00 0.00 2.67
2065 2552 3.206150 ACGCTCCAATCATCGCTAATTT 58.794 40.909 0.00 0.00 0.00 1.82
2066 2553 4.377021 ACGCTCCAATCATCGCTAATTTA 58.623 39.130 0.00 0.00 0.00 1.40
2070 2557 6.521133 CGCTCCAATCATCGCTAATTTATTTC 59.479 38.462 0.00 0.00 0.00 2.17
2071 2558 7.362662 GCTCCAATCATCGCTAATTTATTTCA 58.637 34.615 0.00 0.00 0.00 2.69
2101 2588 4.214980 AGAAGATGCAACGTGAACAAAG 57.785 40.909 0.00 0.00 0.00 2.77
2106 2593 5.872635 AGATGCAACGTGAACAAAGATATG 58.127 37.500 0.00 0.00 0.00 1.78
2116 2603 6.456315 CGTGAACAAAGATATGCATTCCGTTA 60.456 38.462 3.54 0.00 0.00 3.18
2132 2643 7.468631 GCATTCCGTTACCAGTATGAATTGAAT 60.469 37.037 0.00 0.00 39.69 2.57
2292 2803 0.613260 TCTACGCATGGAGCTTGGTT 59.387 50.000 0.00 0.00 42.61 3.67
2409 2920 2.684881 CAATCCATGCTACTTCCACACC 59.315 50.000 0.00 0.00 0.00 4.16
2465 3063 4.901197 TCTGGTCTGTACCTTGCAATTA 57.099 40.909 0.00 0.00 46.91 1.40
2473 3071 5.104527 TCTGTACCTTGCAATTATACTGCCT 60.105 40.000 0.00 0.00 39.13 4.75
2474 3072 4.881273 TGTACCTTGCAATTATACTGCCTG 59.119 41.667 0.00 0.00 39.13 4.85
2483 3081 5.220854 GCAATTATACTGCCTGTGTACCAAG 60.221 44.000 0.00 0.00 33.51 3.61
2491 3089 2.151202 CCTGTGTACCAAGCGTCAAAT 58.849 47.619 0.00 0.00 0.00 2.32
2560 3158 6.311445 GTGACGATCTGTGTTGAATTAGATGT 59.689 38.462 0.00 0.00 30.49 3.06
2561 3159 6.531594 TGACGATCTGTGTTGAATTAGATGTC 59.468 38.462 0.00 0.00 33.43 3.06
2567 3165 6.152154 TCTGTGTTGAATTAGATGTCGTCCTA 59.848 38.462 0.00 0.00 0.00 2.94
2585 3191 8.071368 GTCGTCCTATAGTATGCTGATTATAGC 58.929 40.741 0.00 0.00 43.95 2.97
2600 3206 6.245408 TGATTATAGCACAGTTCCTTTTGGT 58.755 36.000 0.00 0.00 41.38 3.67
2632 3238 6.040166 AGTTCCTAAATTGAGCCATATTGCTG 59.960 38.462 5.94 0.00 42.95 4.41
2693 3320 3.600388 GACTTTGGATCGACTCACCAAT 58.400 45.455 13.28 3.39 42.14 3.16
2701 3328 4.508124 GGATCGACTCACCAATAATCACAC 59.492 45.833 0.00 0.00 0.00 3.82
2748 3375 4.458989 CACTAAACCACCACAAGCACATAT 59.541 41.667 0.00 0.00 0.00 1.78
2793 3420 7.966246 AGTCGTCTATATAGTTTCAGATCGT 57.034 36.000 9.58 0.00 0.00 3.73
2877 3509 8.349983 ACGCAGATAACAGTTGTCTTTAAAAAT 58.650 29.630 9.75 0.00 0.00 1.82
2878 3510 9.820229 CGCAGATAACAGTTGTCTTTAAAAATA 57.180 29.630 9.75 0.00 0.00 1.40
3150 3784 2.464865 CTTCGGCTCCATTCTCTAACG 58.535 52.381 0.00 0.00 0.00 3.18
3232 3872 2.104967 CTCCATTGGCATGTTCCATGT 58.895 47.619 0.00 0.00 35.77 3.21
3233 3873 2.498481 CTCCATTGGCATGTTCCATGTT 59.502 45.455 0.00 0.00 35.77 2.71
3374 4014 5.221224 TGGGTGAGTGAAAGCAACAATTTAG 60.221 40.000 0.00 0.00 0.00 1.85
3375 4015 5.009610 GGGTGAGTGAAAGCAACAATTTAGA 59.990 40.000 0.00 0.00 0.00 2.10
3380 4020 6.507023 AGTGAAAGCAACAATTTAGAACCAG 58.493 36.000 0.00 0.00 0.00 4.00
3429 4071 7.818997 AGAAATCATATGACATGCATTCTGT 57.181 32.000 7.78 0.00 38.44 3.41
3475 4117 1.354368 TCCTTCCCTGGTCCACATTTC 59.646 52.381 0.00 0.00 0.00 2.17
3541 4183 5.405935 AATGTACATAGCGATCATAGCCA 57.594 39.130 9.21 0.00 34.64 4.75
3639 4281 4.963878 CTAATCAAGCTGGCCGGT 57.036 55.556 14.55 3.15 0.00 5.28
3666 4308 0.250684 CCATGGTGGCCGCATATACA 60.251 55.000 19.98 6.64 0.00 2.29
3702 4344 0.034186 TCCCATGCACAGTTCATCCC 60.034 55.000 0.00 0.00 0.00 3.85
3748 4390 0.904865 TGGTGTCCTCGCCTTCTCAT 60.905 55.000 0.00 0.00 43.94 2.90
3816 4458 0.538118 CATGGCTTGGGATTGTTGGG 59.462 55.000 0.00 0.00 0.00 4.12
3918 4560 0.033796 CACCATTCCTGTGGGCATCT 60.034 55.000 0.00 0.00 43.77 2.90
3919 4561 0.033796 ACCATTCCTGTGGGCATCTG 60.034 55.000 0.00 0.00 43.77 2.90
3924 4566 0.613572 TCCTGTGGGCATCTGTCGTA 60.614 55.000 0.00 0.00 0.00 3.43
3966 4608 1.918262 ACAATGCTTGAGAGGGATCCA 59.082 47.619 15.23 0.00 0.00 3.41
4111 4767 3.798202 ACTATTTCGTCTCCAGCAATCC 58.202 45.455 0.00 0.00 0.00 3.01
4137 4793 7.734554 GCTTTGTAGCAGAAGTAACTTTAGAG 58.265 38.462 0.00 0.00 46.95 2.43
4187 4845 6.023357 TGCAGATACAGAAGATAGATCAGC 57.977 41.667 0.00 0.00 31.74 4.26
4229 4890 1.744014 GGCATGTCCATTGCATCCC 59.256 57.895 0.00 0.00 34.01 3.85
4279 4974 4.318332 CATTTGTCTTGCTAGGTCTGACA 58.682 43.478 10.38 0.00 36.10 3.58
4309 5004 9.462174 CAAACTATGTTTGAGCAAGTTATTTCA 57.538 29.630 15.56 0.00 30.51 2.69
4328 5023 2.069273 CATGTCTCCGTGACTGGAAAC 58.931 52.381 7.21 0.00 45.54 2.78
4339 5034 5.501715 CGTGACTGGAAACATGCATATAAC 58.498 41.667 0.00 0.00 41.51 1.89
4393 5088 4.855340 TCTGGAAAAGAAAGTCTTGTGGT 58.145 39.130 0.00 0.00 36.71 4.16
4395 5090 3.951680 TGGAAAAGAAAGTCTTGTGGTCC 59.048 43.478 0.00 0.00 36.71 4.46
4433 5128 5.209240 CGAACGGTTGAAAGCTATCAAAAA 58.791 37.500 0.00 0.00 40.76 1.94
4442 5137 6.460781 TGAAAGCTATCAAAAAGTAGACGGA 58.539 36.000 0.00 0.00 0.00 4.69
4517 5213 9.878599 CAAAAACGAAGTGTAGATACAAAATCT 57.121 29.630 0.00 0.00 45.00 2.40
4518 5214 9.878599 AAAAACGAAGTGTAGATACAAAATCTG 57.121 29.630 0.00 0.00 45.00 2.90
4519 5215 6.648725 ACGAAGTGTAGATACAAAATCTGC 57.351 37.500 0.00 0.00 42.51 4.26
4522 5218 7.334421 ACGAAGTGTAGATACAAAATCTGCAAT 59.666 33.333 7.26 4.18 42.51 3.56
4542 5238 5.694006 GCAATAGAGCTAACGATGAGATTGT 59.306 40.000 0.00 0.00 0.00 2.71
4566 5262 9.890629 TGTATAGTCAATTGAAGTTAGCTGATT 57.109 29.630 10.35 0.00 0.00 2.57
4603 5299 4.162509 AGGATGTAAAGCCCTCTCTAACAC 59.837 45.833 0.00 0.00 0.00 3.32
4608 5304 4.373156 AAAGCCCTCTCTAACACAACAT 57.627 40.909 0.00 0.00 0.00 2.71
4610 5306 4.744795 AGCCCTCTCTAACACAACATAG 57.255 45.455 0.00 0.00 0.00 2.23
4621 5317 9.825972 CTCTAACACAACATAGTGGTTAAATTG 57.174 33.333 0.00 0.00 43.72 2.32
4643 5359 5.916318 TGTTGTCTAAAGTCGGAAAAGGTA 58.084 37.500 0.00 0.00 0.00 3.08
4678 5394 4.877378 AAATTTCAGCATCTTGCCTTGA 57.123 36.364 0.00 0.00 46.52 3.02
4745 5461 1.194781 TCTGAGCCCCTTGACCTGAC 61.195 60.000 0.00 0.00 0.00 3.51
4832 5550 3.549873 CACACAAAAGCCGGTAAAAAGTG 59.450 43.478 1.90 8.35 0.00 3.16
4835 5553 3.444388 ACAAAAGCCGGTAAAAAGTGTGA 59.556 39.130 1.90 0.00 0.00 3.58
4842 5560 4.380128 GCCGGTAAAAAGTGTGAAATAGGG 60.380 45.833 1.90 0.00 0.00 3.53
4879 5601 2.288729 GCAGCATACGCATCAGATTTGA 59.711 45.455 0.00 0.00 42.27 2.69
4905 5627 0.391263 GGGCAGACCTCTTAACACCG 60.391 60.000 0.00 0.00 35.85 4.94
4914 5636 3.181458 ACCTCTTAACACCGCTGAAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
4919 5641 5.705441 TCTTAACACCGCTGAAGAAAATGAT 59.295 36.000 0.00 0.00 0.00 2.45
4955 5677 7.484975 AGACAACTTCCTAGTGAGATTTATCG 58.515 38.462 0.00 0.00 34.01 2.92
4981 5705 3.760537 TGTTTTTCGGTGGTTTTCGAAG 58.239 40.909 0.00 0.00 44.47 3.79
4982 5706 3.190953 TGTTTTTCGGTGGTTTTCGAAGT 59.809 39.130 0.00 0.00 44.47 3.01
4983 5707 4.394300 TGTTTTTCGGTGGTTTTCGAAGTA 59.606 37.500 0.00 0.00 44.47 2.24
4984 5708 4.534794 TTTTCGGTGGTTTTCGAAGTAC 57.465 40.909 0.00 0.84 44.47 2.73
4989 5713 3.426525 CGGTGGTTTTCGAAGTACAGTAC 59.573 47.826 2.05 2.05 0.00 2.73
4996 5720 7.222611 TGGTTTTCGAAGTACAGTACAGTTTAC 59.777 37.037 13.37 2.55 0.00 2.01
4997 5721 7.306807 GGTTTTCGAAGTACAGTACAGTTTACC 60.307 40.741 13.37 7.39 0.00 2.85
4999 5723 6.005583 TCGAAGTACAGTACAGTTTACCAG 57.994 41.667 13.37 0.00 0.00 4.00
5008 5732 6.432472 ACAGTACAGTTTACCAGAGGTAGTAC 59.568 42.308 12.15 12.15 39.52 2.73
5020 5744 3.008049 AGAGGTAGTACCAAACTTGCCAG 59.992 47.826 21.49 0.00 41.95 4.85
5034 5762 3.160585 CCAGGACAGGGCAGACAA 58.839 61.111 0.00 0.00 0.00 3.18
5051 5779 5.163405 GCAGACAACCTACCTTGAGATCATA 60.163 44.000 0.00 0.00 0.00 2.15
5057 5785 9.159254 ACAACCTACCTTGAGATCATATAATGA 57.841 33.333 0.00 0.00 44.55 2.57
5066 5794 5.481824 TGAGATCATATAATGAAGGGCGTCT 59.518 40.000 0.00 0.00 43.50 4.18
5068 5796 7.343057 TGAGATCATATAATGAAGGGCGTCTAT 59.657 37.037 0.00 0.00 43.50 1.98
5140 5868 1.745232 AACAAACACACTGAGCCGAA 58.255 45.000 0.00 0.00 0.00 4.30
5143 5871 2.146342 CAAACACACTGAGCCGAATCT 58.854 47.619 0.00 0.00 0.00 2.40
5144 5872 2.086054 AACACACTGAGCCGAATCTC 57.914 50.000 0.00 0.00 0.00 2.75
5151 5879 0.738975 TGAGCCGAATCTCAGTACGG 59.261 55.000 0.00 0.00 46.74 4.02
5167 5895 1.149627 CGGAAACACTGAACCCCCA 59.850 57.895 0.00 0.00 0.00 4.96
5169 5897 0.106419 GGAAACACTGAACCCCCACA 60.106 55.000 0.00 0.00 0.00 4.17
5171 5899 2.104170 GAAACACTGAACCCCCACAAA 58.896 47.619 0.00 0.00 0.00 2.83
5181 5909 3.434940 ACCCCCACAAATAGACTGAAC 57.565 47.619 0.00 0.00 0.00 3.18
5182 5910 2.986728 ACCCCCACAAATAGACTGAACT 59.013 45.455 0.00 0.00 0.00 3.01
5183 5911 3.009143 ACCCCCACAAATAGACTGAACTC 59.991 47.826 0.00 0.00 0.00 3.01
5184 5912 3.264450 CCCCCACAAATAGACTGAACTCT 59.736 47.826 0.00 0.00 0.00 3.24
5185 5913 4.256920 CCCCACAAATAGACTGAACTCTG 58.743 47.826 0.00 0.00 0.00 3.35
5186 5914 4.020218 CCCCACAAATAGACTGAACTCTGA 60.020 45.833 0.00 0.00 0.00 3.27
5187 5915 5.513094 CCCCACAAATAGACTGAACTCTGAA 60.513 44.000 0.00 0.00 0.00 3.02
5196 5924 6.227298 AGACTGAACTCTGAAGTGAAGAAA 57.773 37.500 0.00 0.00 35.36 2.52
5201 5929 6.406370 TGAACTCTGAAGTGAAGAAAACTGA 58.594 36.000 0.00 0.00 35.36 3.41
5203 5931 6.917217 ACTCTGAAGTGAAGAAAACTGAAG 57.083 37.500 0.00 0.00 33.32 3.02
5222 6007 2.291856 GGAACCCAGAGGACAGAGG 58.708 63.158 0.00 0.00 36.73 3.69
5223 6008 0.545548 GGAACCCAGAGGACAGAGGT 60.546 60.000 0.00 0.00 36.73 3.85
5224 6009 0.899019 GAACCCAGAGGACAGAGGTC 59.101 60.000 0.00 0.00 43.55 3.85
5395 6180 1.061799 GAGCAGCAAATTCACGCACG 61.062 55.000 0.00 0.00 0.00 5.34
5396 6181 1.082169 GCAGCAAATTCACGCACGA 60.082 52.632 0.00 0.00 0.00 4.35
5397 6182 0.454957 GCAGCAAATTCACGCACGAT 60.455 50.000 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.007118 TCTCTGACTATGTGGGCTCCA 59.993 52.381 0.00 0.00 0.00 3.86
1 2 1.781786 TCTCTGACTATGTGGGCTCC 58.218 55.000 0.00 0.00 0.00 4.70
2 3 3.895232 TTTCTCTGACTATGTGGGCTC 57.105 47.619 0.00 0.00 0.00 4.70
3 4 4.640771 TTTTTCTCTGACTATGTGGGCT 57.359 40.909 0.00 0.00 0.00 5.19
157 158 0.862283 CTCTCGCGAACGCTTCCTAC 60.862 60.000 11.33 0.00 39.84 3.18
158 159 1.022982 TCTCTCGCGAACGCTTCCTA 61.023 55.000 11.33 0.00 39.84 2.94
159 160 1.863662 TTCTCTCGCGAACGCTTCCT 61.864 55.000 11.33 0.00 39.84 3.36
160 161 1.007336 TTTCTCTCGCGAACGCTTCC 61.007 55.000 11.33 0.00 39.84 3.46
161 162 0.363846 CTTTCTCTCGCGAACGCTTC 59.636 55.000 11.33 0.00 39.84 3.86
162 163 1.618640 GCTTTCTCTCGCGAACGCTT 61.619 55.000 11.33 0.00 39.84 4.68
163 164 2.089349 GCTTTCTCTCGCGAACGCT 61.089 57.895 11.33 0.00 39.84 5.07
164 165 2.272293 CTGCTTTCTCTCGCGAACGC 62.272 60.000 11.33 5.04 38.29 4.84
165 166 0.729478 TCTGCTTTCTCTCGCGAACG 60.729 55.000 11.33 3.85 42.01 3.95
166 167 0.988439 CTCTGCTTTCTCTCGCGAAC 59.012 55.000 11.33 0.00 0.00 3.95
167 168 0.109086 CCTCTGCTTTCTCTCGCGAA 60.109 55.000 11.33 0.02 0.00 4.70
168 169 1.508545 CCTCTGCTTTCTCTCGCGA 59.491 57.895 9.26 9.26 0.00 5.87
169 170 2.164026 GCCTCTGCTTTCTCTCGCG 61.164 63.158 0.00 0.00 33.53 5.87
170 171 2.164026 CGCCTCTGCTTTCTCTCGC 61.164 63.158 0.00 0.00 34.43 5.03
171 172 2.164026 GCGCCTCTGCTTTCTCTCG 61.164 63.158 0.00 0.00 34.43 4.04
172 173 2.164026 CGCGCCTCTGCTTTCTCTC 61.164 63.158 0.00 0.00 34.43 3.20
173 174 2.125753 CGCGCCTCTGCTTTCTCT 60.126 61.111 0.00 0.00 34.43 3.10
174 175 2.433318 ACGCGCCTCTGCTTTCTC 60.433 61.111 5.73 0.00 34.43 2.87
175 176 2.740055 CACGCGCCTCTGCTTTCT 60.740 61.111 5.73 0.00 34.43 2.52
176 177 2.738521 TCACGCGCCTCTGCTTTC 60.739 61.111 5.73 0.00 34.43 2.62
177 178 3.044305 GTCACGCGCCTCTGCTTT 61.044 61.111 5.73 0.00 34.43 3.51
181 182 2.811317 GAAGGTCACGCGCCTCTG 60.811 66.667 5.73 0.00 34.81 3.35
182 183 4.070552 GGAAGGTCACGCGCCTCT 62.071 66.667 5.73 0.00 34.81 3.69
183 184 4.373116 TGGAAGGTCACGCGCCTC 62.373 66.667 5.73 0.00 34.81 4.70
184 185 4.681978 GTGGAAGGTCACGCGCCT 62.682 66.667 5.73 0.73 38.11 5.52
185 186 4.681978 AGTGGAAGGTCACGCGCC 62.682 66.667 5.73 0.00 42.10 6.53
186 187 0.947180 TAAAGTGGAAGGTCACGCGC 60.947 55.000 5.73 0.00 42.10 6.86
187 188 1.068474 CTAAAGTGGAAGGTCACGCG 58.932 55.000 3.53 3.53 42.10 6.01
188 189 0.796927 GCTAAAGTGGAAGGTCACGC 59.203 55.000 0.00 0.00 42.10 5.34
189 190 2.163818 TGCTAAAGTGGAAGGTCACG 57.836 50.000 0.00 0.00 42.10 4.35
190 191 3.440522 GGATTGCTAAAGTGGAAGGTCAC 59.559 47.826 0.00 0.00 37.89 3.67
191 192 3.073798 TGGATTGCTAAAGTGGAAGGTCA 59.926 43.478 0.00 0.00 0.00 4.02
192 193 3.440522 GTGGATTGCTAAAGTGGAAGGTC 59.559 47.826 0.00 0.00 0.00 3.85
193 194 3.421844 GTGGATTGCTAAAGTGGAAGGT 58.578 45.455 0.00 0.00 0.00 3.50
194 195 2.755103 GGTGGATTGCTAAAGTGGAAGG 59.245 50.000 0.00 0.00 0.00 3.46
195 196 3.191371 GTGGTGGATTGCTAAAGTGGAAG 59.809 47.826 0.00 0.00 0.00 3.46
196 197 3.153919 GTGGTGGATTGCTAAAGTGGAA 58.846 45.455 0.00 0.00 0.00 3.53
197 198 2.790433 GTGGTGGATTGCTAAAGTGGA 58.210 47.619 0.00 0.00 0.00 4.02
198 199 1.468520 CGTGGTGGATTGCTAAAGTGG 59.531 52.381 0.00 0.00 0.00 4.00
199 200 1.468520 CCGTGGTGGATTGCTAAAGTG 59.531 52.381 0.00 0.00 42.00 3.16
200 201 1.613255 CCCGTGGTGGATTGCTAAAGT 60.613 52.381 0.00 0.00 42.00 2.66
201 202 1.094785 CCCGTGGTGGATTGCTAAAG 58.905 55.000 0.00 0.00 42.00 1.85
202 203 0.402504 ACCCGTGGTGGATTGCTAAA 59.597 50.000 0.00 0.00 42.00 1.85
203 204 0.035820 GACCCGTGGTGGATTGCTAA 60.036 55.000 0.00 0.00 42.00 3.09
204 205 1.600107 GACCCGTGGTGGATTGCTA 59.400 57.895 0.00 0.00 42.00 3.49
205 206 2.351276 GACCCGTGGTGGATTGCT 59.649 61.111 0.00 0.00 42.00 3.91
206 207 3.124921 CGACCCGTGGTGGATTGC 61.125 66.667 0.00 0.00 42.00 3.56
207 208 3.124921 GCGACCCGTGGTGGATTG 61.125 66.667 8.81 0.00 42.00 2.67
208 209 3.632080 TGCGACCCGTGGTGGATT 61.632 61.111 8.81 0.00 42.00 3.01
209 210 4.388499 GTGCGACCCGTGGTGGAT 62.388 66.667 8.81 0.00 42.00 3.41
236 237 1.807495 GCTGTAGCGCTAGTAGGGGG 61.807 65.000 19.48 4.31 0.00 5.40
237 238 1.660917 GCTGTAGCGCTAGTAGGGG 59.339 63.158 19.48 5.70 0.00 4.79
248 249 1.727335 GAGTCGAACCAAAGCTGTAGC 59.273 52.381 0.00 0.00 42.49 3.58
249 250 2.338500 GGAGTCGAACCAAAGCTGTAG 58.662 52.381 5.21 0.00 0.00 2.74
250 251 1.001633 GGGAGTCGAACCAAAGCTGTA 59.998 52.381 11.20 0.00 0.00 2.74
251 252 0.250338 GGGAGTCGAACCAAAGCTGT 60.250 55.000 11.20 0.00 0.00 4.40
252 253 0.955919 GGGGAGTCGAACCAAAGCTG 60.956 60.000 11.20 0.00 0.00 4.24
253 254 1.375326 GGGGAGTCGAACCAAAGCT 59.625 57.895 11.20 0.00 0.00 3.74
254 255 1.072505 TGGGGAGTCGAACCAAAGC 59.927 57.895 11.20 0.00 0.00 3.51
255 256 0.107831 TGTGGGGAGTCGAACCAAAG 59.892 55.000 11.20 0.00 35.77 2.77
256 257 0.107831 CTGTGGGGAGTCGAACCAAA 59.892 55.000 11.20 1.73 35.77 3.28
257 258 1.752198 CTGTGGGGAGTCGAACCAA 59.248 57.895 11.20 0.00 35.77 3.67
258 259 2.214216 CCTGTGGGGAGTCGAACCA 61.214 63.158 11.20 4.14 37.23 3.67
259 260 2.663196 CCTGTGGGGAGTCGAACC 59.337 66.667 0.00 0.00 37.23 3.62
260 261 2.047179 GCCTGTGGGGAGTCGAAC 60.047 66.667 0.00 0.00 37.23 3.95
261 262 3.691342 CGCCTGTGGGGAGTCGAA 61.691 66.667 0.00 0.00 37.91 3.71
265 266 4.715130 TAGGCGCCTGTGGGGAGT 62.715 66.667 38.98 12.13 37.91 3.85
266 267 2.270874 AATTAGGCGCCTGTGGGGAG 62.271 60.000 38.98 0.00 37.91 4.30
267 268 1.858739 AAATTAGGCGCCTGTGGGGA 61.859 55.000 38.98 15.64 37.91 4.81
268 269 0.970427 AAAATTAGGCGCCTGTGGGG 60.970 55.000 38.98 0.00 38.76 4.96
269 270 1.757682 TAAAATTAGGCGCCTGTGGG 58.242 50.000 38.98 0.00 0.00 4.61
270 271 3.548014 CGAATAAAATTAGGCGCCTGTGG 60.548 47.826 38.98 11.48 0.00 4.17
271 272 3.617669 CGAATAAAATTAGGCGCCTGTG 58.382 45.455 38.98 11.40 0.00 3.66
272 273 2.032924 GCGAATAAAATTAGGCGCCTGT 59.967 45.455 38.98 24.05 38.67 4.00
273 274 2.650608 GCGAATAAAATTAGGCGCCTG 58.349 47.619 38.98 18.63 38.67 4.85
276 277 1.335597 GGGGCGAATAAAATTAGGCGC 60.336 52.381 0.00 0.00 43.27 6.53
277 278 2.227194 AGGGGCGAATAAAATTAGGCG 58.773 47.619 0.00 0.00 0.00 5.52
278 279 4.395625 AGTAGGGGCGAATAAAATTAGGC 58.604 43.478 0.00 0.00 0.00 3.93
279 280 5.001874 GGAGTAGGGGCGAATAAAATTAGG 58.998 45.833 0.00 0.00 0.00 2.69
280 281 5.866207 AGGAGTAGGGGCGAATAAAATTAG 58.134 41.667 0.00 0.00 0.00 1.73
281 282 5.899631 AGGAGTAGGGGCGAATAAAATTA 57.100 39.130 0.00 0.00 0.00 1.40
282 283 4.790718 AGGAGTAGGGGCGAATAAAATT 57.209 40.909 0.00 0.00 0.00 1.82
283 284 4.790718 AAGGAGTAGGGGCGAATAAAAT 57.209 40.909 0.00 0.00 0.00 1.82
284 285 4.226620 AGAAAGGAGTAGGGGCGAATAAAA 59.773 41.667 0.00 0.00 0.00 1.52
285 286 3.778629 AGAAAGGAGTAGGGGCGAATAAA 59.221 43.478 0.00 0.00 0.00 1.40
286 287 3.381335 AGAAAGGAGTAGGGGCGAATAA 58.619 45.455 0.00 0.00 0.00 1.40
287 288 3.042059 AGAAAGGAGTAGGGGCGAATA 57.958 47.619 0.00 0.00 0.00 1.75
288 289 1.880941 AGAAAGGAGTAGGGGCGAAT 58.119 50.000 0.00 0.00 0.00 3.34
289 290 1.553704 GAAGAAAGGAGTAGGGGCGAA 59.446 52.381 0.00 0.00 0.00 4.70
290 291 1.192428 GAAGAAAGGAGTAGGGGCGA 58.808 55.000 0.00 0.00 0.00 5.54
291 292 0.178301 GGAAGAAAGGAGTAGGGGCG 59.822 60.000 0.00 0.00 0.00 6.13
292 293 1.065345 GTGGAAGAAAGGAGTAGGGGC 60.065 57.143 0.00 0.00 0.00 5.80
293 294 1.560146 GGTGGAAGAAAGGAGTAGGGG 59.440 57.143 0.00 0.00 0.00 4.79
294 295 1.560146 GGGTGGAAGAAAGGAGTAGGG 59.440 57.143 0.00 0.00 0.00 3.53
295 296 2.027100 GTGGGTGGAAGAAAGGAGTAGG 60.027 54.545 0.00 0.00 0.00 3.18
296 297 2.907042 AGTGGGTGGAAGAAAGGAGTAG 59.093 50.000 0.00 0.00 0.00 2.57
297 298 2.637872 CAGTGGGTGGAAGAAAGGAGTA 59.362 50.000 0.00 0.00 0.00 2.59
298 299 1.421646 CAGTGGGTGGAAGAAAGGAGT 59.578 52.381 0.00 0.00 0.00 3.85
299 300 1.699634 TCAGTGGGTGGAAGAAAGGAG 59.300 52.381 0.00 0.00 0.00 3.69
300 301 1.420138 GTCAGTGGGTGGAAGAAAGGA 59.580 52.381 0.00 0.00 0.00 3.36
301 302 1.142870 TGTCAGTGGGTGGAAGAAAGG 59.857 52.381 0.00 0.00 0.00 3.11
302 303 2.638480 TGTCAGTGGGTGGAAGAAAG 57.362 50.000 0.00 0.00 0.00 2.62
303 304 2.174639 ACATGTCAGTGGGTGGAAGAAA 59.825 45.455 0.00 0.00 0.00 2.52
304 305 1.774254 ACATGTCAGTGGGTGGAAGAA 59.226 47.619 0.00 0.00 0.00 2.52
305 306 1.072173 CACATGTCAGTGGGTGGAAGA 59.928 52.381 0.00 0.00 35.88 2.87
306 307 1.527034 CACATGTCAGTGGGTGGAAG 58.473 55.000 0.00 0.00 35.88 3.46
307 308 3.723772 CACATGTCAGTGGGTGGAA 57.276 52.632 0.00 0.00 35.88 3.53
314 315 2.361610 GGGCCCCACATGTCAGTG 60.362 66.667 12.23 0.00 39.21 3.66
315 316 2.858476 TGGGCCCCACATGTCAGT 60.858 61.111 22.27 0.00 0.00 3.41
324 325 0.982852 CTCTGACTATGTGGGCCCCA 60.983 60.000 22.27 17.75 0.00 4.96
325 326 0.691078 TCTCTGACTATGTGGGCCCC 60.691 60.000 22.27 11.72 0.00 5.80
326 327 0.755686 CTCTCTGACTATGTGGGCCC 59.244 60.000 17.59 17.59 0.00 5.80
327 328 1.781786 TCTCTCTGACTATGTGGGCC 58.218 55.000 0.00 0.00 0.00 5.80
328 329 3.895232 TTTCTCTCTGACTATGTGGGC 57.105 47.619 0.00 0.00 0.00 5.36
347 348 0.108019 AGAAGGCCTCGTCCGTTTTT 59.892 50.000 5.23 0.00 0.00 1.94
348 349 0.108019 AAGAAGGCCTCGTCCGTTTT 59.892 50.000 5.23 0.00 0.00 2.43
349 350 0.108019 AAAGAAGGCCTCGTCCGTTT 59.892 50.000 5.23 0.00 0.00 3.60
350 351 0.602905 CAAAGAAGGCCTCGTCCGTT 60.603 55.000 5.23 0.00 0.00 4.44
351 352 1.004918 CAAAGAAGGCCTCGTCCGT 60.005 57.895 5.23 0.00 0.00 4.69
352 353 1.014564 GTCAAAGAAGGCCTCGTCCG 61.015 60.000 5.23 0.00 0.00 4.79
353 354 1.014564 CGTCAAAGAAGGCCTCGTCC 61.015 60.000 5.23 0.00 0.00 4.79
354 355 1.014564 CCGTCAAAGAAGGCCTCGTC 61.015 60.000 5.23 0.00 0.00 4.20
355 356 1.004918 CCGTCAAAGAAGGCCTCGT 60.005 57.895 5.23 0.00 0.00 4.18
356 357 1.741770 CCCGTCAAAGAAGGCCTCG 60.742 63.158 5.23 2.60 30.00 4.63
357 358 0.673956 GACCCGTCAAAGAAGGCCTC 60.674 60.000 5.23 0.00 30.00 4.70
358 359 1.375326 GACCCGTCAAAGAAGGCCT 59.625 57.895 0.00 0.00 30.00 5.19
359 360 0.536460 TTGACCCGTCAAAGAAGGCC 60.536 55.000 7.80 0.00 45.56 5.19
360 361 3.015516 TTGACCCGTCAAAGAAGGC 57.984 52.632 7.80 0.00 45.56 4.35
367 368 7.557724 TGTATTACATCTATTTGACCCGTCAA 58.442 34.615 6.17 6.17 46.72 3.18
368 369 7.114866 TGTATTACATCTATTTGACCCGTCA 57.885 36.000 0.00 0.00 37.91 4.35
369 370 8.428186 TTTGTATTACATCTATTTGACCCGTC 57.572 34.615 0.00 0.00 0.00 4.79
370 371 7.012044 GCTTTGTATTACATCTATTTGACCCGT 59.988 37.037 0.00 0.00 0.00 5.28
371 372 7.226720 AGCTTTGTATTACATCTATTTGACCCG 59.773 37.037 0.00 0.00 0.00 5.28
372 373 8.451908 AGCTTTGTATTACATCTATTTGACCC 57.548 34.615 0.00 0.00 0.00 4.46
381 382 9.847706 CAGATCGTATAGCTTTGTATTACATCT 57.152 33.333 0.00 0.00 0.00 2.90
382 383 9.841880 TCAGATCGTATAGCTTTGTATTACATC 57.158 33.333 0.00 0.00 0.00 3.06
387 388 9.847706 CACTATCAGATCGTATAGCTTTGTATT 57.152 33.333 14.00 0.00 0.00 1.89
388 389 9.232473 TCACTATCAGATCGTATAGCTTTGTAT 57.768 33.333 14.00 0.00 0.00 2.29
389 390 8.504815 GTCACTATCAGATCGTATAGCTTTGTA 58.495 37.037 14.00 0.00 0.00 2.41
390 391 7.364200 GTCACTATCAGATCGTATAGCTTTGT 58.636 38.462 14.00 0.00 0.00 2.83
391 392 6.804295 GGTCACTATCAGATCGTATAGCTTTG 59.196 42.308 14.00 7.97 0.00 2.77
392 393 6.490381 TGGTCACTATCAGATCGTATAGCTTT 59.510 38.462 14.00 0.00 0.00 3.51
393 394 6.004574 TGGTCACTATCAGATCGTATAGCTT 58.995 40.000 14.00 0.00 0.00 3.74
394 395 5.561679 TGGTCACTATCAGATCGTATAGCT 58.438 41.667 14.00 0.00 0.00 3.32
395 396 5.881777 TGGTCACTATCAGATCGTATAGC 57.118 43.478 14.00 0.00 0.00 2.97
399 400 9.681062 TGATTATATGGTCACTATCAGATCGTA 57.319 33.333 0.00 0.00 0.00 3.43
400 401 8.462811 GTGATTATATGGTCACTATCAGATCGT 58.537 37.037 12.49 0.00 41.10 3.73
401 402 7.918033 GGTGATTATATGGTCACTATCAGATCG 59.082 40.741 16.85 0.00 43.23 3.69
402 403 8.976353 AGGTGATTATATGGTCACTATCAGATC 58.024 37.037 16.85 0.00 43.23 2.75
403 404 8.907829 AGGTGATTATATGGTCACTATCAGAT 57.092 34.615 16.85 0.00 43.23 2.90
404 405 7.950124 TGAGGTGATTATATGGTCACTATCAGA 59.050 37.037 16.85 4.51 43.23 3.27
405 406 8.127150 TGAGGTGATTATATGGTCACTATCAG 57.873 38.462 16.85 0.00 43.23 2.90
406 407 8.367911 GTTGAGGTGATTATATGGTCACTATCA 58.632 37.037 16.85 16.87 43.23 2.15
407 408 8.367911 TGTTGAGGTGATTATATGGTCACTATC 58.632 37.037 16.85 15.34 43.23 2.08
408 409 8.150945 GTGTTGAGGTGATTATATGGTCACTAT 58.849 37.037 16.85 9.62 43.23 2.12
409 410 7.497595 GTGTTGAGGTGATTATATGGTCACTA 58.502 38.462 16.85 6.42 43.23 2.74
410 411 6.349300 GTGTTGAGGTGATTATATGGTCACT 58.651 40.000 16.85 7.59 43.23 3.41
411 412 5.234329 CGTGTTGAGGTGATTATATGGTCAC 59.766 44.000 11.71 11.71 43.02 3.67
412 413 5.105106 ACGTGTTGAGGTGATTATATGGTCA 60.105 40.000 0.00 0.00 0.00 4.02
413 414 5.357257 ACGTGTTGAGGTGATTATATGGTC 58.643 41.667 0.00 0.00 0.00 4.02
414 415 5.353394 ACGTGTTGAGGTGATTATATGGT 57.647 39.130 0.00 0.00 0.00 3.55
421 422 9.424319 GATCATTATATACGTGTTGAGGTGATT 57.576 33.333 0.00 0.00 0.00 2.57
422 423 7.755373 CGATCATTATATACGTGTTGAGGTGAT 59.245 37.037 0.00 0.00 0.00 3.06
423 424 7.081976 CGATCATTATATACGTGTTGAGGTGA 58.918 38.462 0.00 0.00 0.00 4.02
424 425 6.861572 ACGATCATTATATACGTGTTGAGGTG 59.138 38.462 0.00 0.00 35.91 4.00
425 426 6.978338 ACGATCATTATATACGTGTTGAGGT 58.022 36.000 0.00 0.00 35.91 3.85
426 427 9.569167 AATACGATCATTATATACGTGTTGAGG 57.431 33.333 0.00 0.00 37.06 3.86
460 461 8.296713 GCTCACTTTGGTCAATGTATTTAAGAA 58.703 33.333 2.61 0.00 0.00 2.52
461 462 7.360861 CGCTCACTTTGGTCAATGTATTTAAGA 60.361 37.037 2.61 0.00 0.00 2.10
462 463 6.742718 CGCTCACTTTGGTCAATGTATTTAAG 59.257 38.462 2.61 0.00 0.00 1.85
463 464 6.205853 ACGCTCACTTTGGTCAATGTATTTAA 59.794 34.615 2.61 0.00 0.00 1.52
464 465 5.703592 ACGCTCACTTTGGTCAATGTATTTA 59.296 36.000 2.61 0.00 0.00 1.40
465 466 4.518970 ACGCTCACTTTGGTCAATGTATTT 59.481 37.500 2.61 0.00 0.00 1.40
466 467 4.072131 ACGCTCACTTTGGTCAATGTATT 58.928 39.130 2.61 0.00 0.00 1.89
467 468 3.674997 ACGCTCACTTTGGTCAATGTAT 58.325 40.909 2.61 0.00 0.00 2.29
468 469 3.120321 ACGCTCACTTTGGTCAATGTA 57.880 42.857 2.61 0.00 0.00 2.29
469 470 1.967319 ACGCTCACTTTGGTCAATGT 58.033 45.000 0.00 0.00 0.00 2.71
470 471 4.259810 CGTATACGCTCACTTTGGTCAATG 60.260 45.833 13.08 0.00 0.00 2.82
471 472 3.863424 CGTATACGCTCACTTTGGTCAAT 59.137 43.478 13.08 0.00 0.00 2.57
472 473 3.057386 TCGTATACGCTCACTTTGGTCAA 60.057 43.478 20.42 0.00 39.60 3.18
473 474 2.488937 TCGTATACGCTCACTTTGGTCA 59.511 45.455 20.42 0.00 39.60 4.02
474 475 3.141002 TCGTATACGCTCACTTTGGTC 57.859 47.619 20.42 0.00 39.60 4.02
475 476 3.795623 ATCGTATACGCTCACTTTGGT 57.204 42.857 20.42 0.00 39.60 3.67
476 477 5.279384 ACTTATCGTATACGCTCACTTTGG 58.721 41.667 20.42 5.94 39.60 3.28
477 478 6.691818 AGAACTTATCGTATACGCTCACTTTG 59.308 38.462 20.42 7.25 39.60 2.77
478 479 6.691818 CAGAACTTATCGTATACGCTCACTTT 59.308 38.462 20.42 8.66 39.60 2.66
479 480 6.037940 TCAGAACTTATCGTATACGCTCACTT 59.962 38.462 20.42 8.45 39.60 3.16
480 481 5.526479 TCAGAACTTATCGTATACGCTCACT 59.474 40.000 20.42 9.62 39.60 3.41
481 482 5.620417 GTCAGAACTTATCGTATACGCTCAC 59.380 44.000 20.42 2.92 39.60 3.51
482 483 5.277683 GGTCAGAACTTATCGTATACGCTCA 60.278 44.000 20.42 3.90 39.60 4.26
483 484 5.145759 GGTCAGAACTTATCGTATACGCTC 58.854 45.833 20.42 9.18 39.60 5.03
484 485 4.577693 TGGTCAGAACTTATCGTATACGCT 59.422 41.667 20.42 13.61 39.60 5.07
485 486 4.674211 GTGGTCAGAACTTATCGTATACGC 59.326 45.833 20.42 4.62 39.60 4.42
486 487 5.210715 GGTGGTCAGAACTTATCGTATACG 58.789 45.833 19.23 19.23 41.45 3.06
487 488 5.210715 CGGTGGTCAGAACTTATCGTATAC 58.789 45.833 0.00 0.00 0.00 1.47
488 489 4.276678 CCGGTGGTCAGAACTTATCGTATA 59.723 45.833 0.00 0.00 0.00 1.47
489 490 3.067742 CCGGTGGTCAGAACTTATCGTAT 59.932 47.826 0.00 0.00 0.00 3.06
490 491 2.424601 CCGGTGGTCAGAACTTATCGTA 59.575 50.000 0.00 0.00 0.00 3.43
491 492 1.203994 CCGGTGGTCAGAACTTATCGT 59.796 52.381 0.00 0.00 0.00 3.73
492 493 1.203994 ACCGGTGGTCAGAACTTATCG 59.796 52.381 6.12 0.00 0.00 2.92
493 494 2.618053 CACCGGTGGTCAGAACTTATC 58.382 52.381 27.57 0.00 31.02 1.75
494 495 1.338769 GCACCGGTGGTCAGAACTTAT 60.339 52.381 34.58 0.00 31.02 1.73
495 496 0.034337 GCACCGGTGGTCAGAACTTA 59.966 55.000 34.58 0.00 31.02 2.24
496 497 1.227853 GCACCGGTGGTCAGAACTT 60.228 57.895 34.58 0.00 31.02 2.66
497 498 1.768684 ATGCACCGGTGGTCAGAACT 61.769 55.000 34.58 8.35 31.02 3.01
498 499 0.889186 AATGCACCGGTGGTCAGAAC 60.889 55.000 34.58 17.09 31.02 3.01
499 500 0.179004 AAATGCACCGGTGGTCAGAA 60.179 50.000 34.58 4.02 31.02 3.02
500 501 0.179004 AAAATGCACCGGTGGTCAGA 60.179 50.000 34.58 5.73 31.02 3.27
501 502 1.199097 GTAAAATGCACCGGTGGTCAG 59.801 52.381 34.58 10.83 31.02 3.51
502 503 1.202830 AGTAAAATGCACCGGTGGTCA 60.203 47.619 34.58 24.95 31.02 4.02
503 504 1.530323 AGTAAAATGCACCGGTGGTC 58.470 50.000 34.58 20.04 31.02 4.02
504 505 2.863132 TAGTAAAATGCACCGGTGGT 57.137 45.000 34.58 0.00 35.62 4.16
505 506 4.506886 TTTTAGTAAAATGCACCGGTGG 57.493 40.909 34.58 17.30 0.00 4.61
788 1178 2.285977 CATACAAGGCTTTACGGGGTC 58.714 52.381 0.00 0.00 0.00 4.46
789 1179 1.631898 ACATACAAGGCTTTACGGGGT 59.368 47.619 0.00 0.00 0.00 4.95
791 1181 3.261981 AGACATACAAGGCTTTACGGG 57.738 47.619 0.00 0.00 0.00 5.28
792 1182 4.098960 TCCTAGACATACAAGGCTTTACGG 59.901 45.833 0.00 0.00 0.00 4.02
793 1183 5.258456 TCCTAGACATACAAGGCTTTACG 57.742 43.478 0.00 0.00 0.00 3.18
794 1184 9.780186 AATAATCCTAGACATACAAGGCTTTAC 57.220 33.333 0.00 0.00 0.00 2.01
795 1185 9.778741 CAATAATCCTAGACATACAAGGCTTTA 57.221 33.333 0.00 0.00 0.00 1.85
796 1186 7.229506 GCAATAATCCTAGACATACAAGGCTTT 59.770 37.037 0.00 0.00 0.00 3.51
797 1187 6.712547 GCAATAATCCTAGACATACAAGGCTT 59.287 38.462 0.00 0.00 0.00 4.35
798 1188 6.234177 GCAATAATCCTAGACATACAAGGCT 58.766 40.000 0.00 0.00 0.00 4.58
799 1189 5.412904 GGCAATAATCCTAGACATACAAGGC 59.587 44.000 0.00 0.00 0.00 4.35
800 1190 5.940470 GGGCAATAATCCTAGACATACAAGG 59.060 44.000 0.00 0.00 0.00 3.61
801 1191 5.639506 CGGGCAATAATCCTAGACATACAAG 59.360 44.000 0.00 0.00 0.00 3.16
802 1192 5.512404 CCGGGCAATAATCCTAGACATACAA 60.512 44.000 0.00 0.00 0.00 2.41
803 1193 4.020573 CCGGGCAATAATCCTAGACATACA 60.021 45.833 0.00 0.00 0.00 2.29
804 1194 4.222145 TCCGGGCAATAATCCTAGACATAC 59.778 45.833 0.00 0.00 0.00 2.39
805 1195 4.422057 TCCGGGCAATAATCCTAGACATA 58.578 43.478 0.00 0.00 0.00 2.29
806 1196 3.248024 TCCGGGCAATAATCCTAGACAT 58.752 45.455 0.00 0.00 0.00 3.06
807 1197 2.632996 CTCCGGGCAATAATCCTAGACA 59.367 50.000 0.00 0.00 0.00 3.41
808 1198 2.028020 CCTCCGGGCAATAATCCTAGAC 60.028 54.545 0.00 0.00 0.00 2.59
809 1199 2.257207 CCTCCGGGCAATAATCCTAGA 58.743 52.381 0.00 0.00 0.00 2.43
810 1200 1.279271 CCCTCCGGGCAATAATCCTAG 59.721 57.143 0.00 0.00 35.35 3.02
811 1201 1.132657 TCCCTCCGGGCAATAATCCTA 60.133 52.381 0.00 0.00 43.94 2.94
812 1202 0.401395 TCCCTCCGGGCAATAATCCT 60.401 55.000 0.00 0.00 43.94 3.24
813 1203 0.036875 CTCCCTCCGGGCAATAATCC 59.963 60.000 0.00 0.00 43.94 3.01
814 1204 1.002544 CTCTCCCTCCGGGCAATAATC 59.997 57.143 0.00 0.00 43.94 1.75
815 1205 1.059913 CTCTCCCTCCGGGCAATAAT 58.940 55.000 0.00 0.00 43.94 1.28
816 1206 1.696097 GCTCTCCCTCCGGGCAATAA 61.696 60.000 0.00 0.00 43.94 1.40
817 1207 2.140792 GCTCTCCCTCCGGGCAATA 61.141 63.158 0.00 0.00 43.94 1.90
818 1208 3.483869 GCTCTCCCTCCGGGCAAT 61.484 66.667 0.00 0.00 43.94 3.56
823 1213 4.154347 GTGCTGCTCTCCCTCCGG 62.154 72.222 0.00 0.00 0.00 5.14
824 1214 1.395045 TATGTGCTGCTCTCCCTCCG 61.395 60.000 0.00 0.00 0.00 4.63
825 1215 0.833287 TTATGTGCTGCTCTCCCTCC 59.167 55.000 0.00 0.00 0.00 4.30
826 1216 2.698855 TTTATGTGCTGCTCTCCCTC 57.301 50.000 0.00 0.00 0.00 4.30
827 1217 4.778213 TTATTTATGTGCTGCTCTCCCT 57.222 40.909 0.00 0.00 0.00 4.20
828 1218 4.640201 TGTTTATTTATGTGCTGCTCTCCC 59.360 41.667 0.00 0.00 0.00 4.30
829 1219 5.449177 GGTGTTTATTTATGTGCTGCTCTCC 60.449 44.000 0.00 0.00 0.00 3.71
830 1220 5.123820 TGGTGTTTATTTATGTGCTGCTCTC 59.876 40.000 0.00 0.00 0.00 3.20
831 1221 5.009631 TGGTGTTTATTTATGTGCTGCTCT 58.990 37.500 0.00 0.00 0.00 4.09
832 1222 5.095490 GTGGTGTTTATTTATGTGCTGCTC 58.905 41.667 0.00 0.00 0.00 4.26
833 1223 4.082245 GGTGGTGTTTATTTATGTGCTGCT 60.082 41.667 0.00 0.00 0.00 4.24
834 1224 4.173256 GGTGGTGTTTATTTATGTGCTGC 58.827 43.478 0.00 0.00 0.00 5.25
835 1225 4.411327 CGGTGGTGTTTATTTATGTGCTG 58.589 43.478 0.00 0.00 0.00 4.41
1567 2015 3.755628 TCTTCGCCTTCGTCCCCG 61.756 66.667 0.00 0.00 36.96 5.73
1598 2046 1.992170 CGGACGAGTTACTTCCCAAG 58.008 55.000 0.00 0.00 33.98 3.61
1678 2126 5.442391 ACTCCAGAAGCTTCCTAGTACTAG 58.558 45.833 22.81 21.11 0.00 2.57
1681 2129 6.718522 ATTACTCCAGAAGCTTCCTAGTAC 57.281 41.667 22.81 0.00 0.00 2.73
1706 2154 3.054361 ACAGCATGGGGACTAGGTAAAAG 60.054 47.826 0.00 0.00 43.62 2.27
1712 2160 1.561542 AGAAACAGCATGGGGACTAGG 59.438 52.381 0.00 0.00 43.62 3.02
1719 2190 6.375455 AGACTATGTAAAAGAAACAGCATGGG 59.625 38.462 0.00 0.00 43.62 4.00
1730 2201 6.299805 ACAGCATGGAGACTATGTAAAAGA 57.700 37.500 0.00 0.00 43.62 2.52
1731 2202 6.992063 AACAGCATGGAGACTATGTAAAAG 57.008 37.500 0.00 0.00 43.62 2.27
1777 2250 5.409826 ACATTTACTTAAGCAGACTGAGCAC 59.590 40.000 6.65 0.00 0.00 4.40
1851 2329 6.635030 ACTCACACGATACAGCATATTCTA 57.365 37.500 0.00 0.00 0.00 2.10
1921 2401 8.990163 ATTGGAAACCAACCGATTACTTATAT 57.010 30.769 5.33 0.00 46.95 0.86
1928 2408 5.355910 GCTCTAATTGGAAACCAACCGATTA 59.644 40.000 5.33 0.00 46.95 1.75
1952 2432 2.037251 TGAGAGGAAGGAAAGTTGACCG 59.963 50.000 0.00 0.00 0.00 4.79
1998 2478 3.013921 TCGGCTTTGACCATATCCAAAC 58.986 45.455 0.00 0.00 0.00 2.93
2044 2531 2.533266 ATTAGCGATGATTGGAGCGT 57.467 45.000 0.00 0.00 34.34 5.07
2075 2562 4.335315 TGTTCACGTTGCATCTTCTTTCTT 59.665 37.500 0.00 0.00 0.00 2.52
2076 2563 3.876914 TGTTCACGTTGCATCTTCTTTCT 59.123 39.130 0.00 0.00 0.00 2.52
2077 2564 4.209452 TGTTCACGTTGCATCTTCTTTC 57.791 40.909 0.00 0.00 0.00 2.62
2078 2565 4.630894 TTGTTCACGTTGCATCTTCTTT 57.369 36.364 0.00 0.00 0.00 2.52
2079 2566 4.335315 TCTTTGTTCACGTTGCATCTTCTT 59.665 37.500 0.00 0.00 0.00 2.52
2080 2567 3.876914 TCTTTGTTCACGTTGCATCTTCT 59.123 39.130 0.00 0.00 0.00 2.85
2081 2568 4.209452 TCTTTGTTCACGTTGCATCTTC 57.791 40.909 0.00 0.00 0.00 2.87
2082 2569 4.836125 ATCTTTGTTCACGTTGCATCTT 57.164 36.364 0.00 0.00 0.00 2.40
2083 2570 5.674569 GCATATCTTTGTTCACGTTGCATCT 60.675 40.000 0.00 0.00 0.00 2.90
2084 2571 4.496895 GCATATCTTTGTTCACGTTGCATC 59.503 41.667 0.00 0.00 0.00 3.91
2132 2643 5.320277 TCACCACCATCACAAATGTCATAA 58.680 37.500 0.00 0.00 0.00 1.90
2409 2920 2.668212 TGGAGCACGAAAAGGCCG 60.668 61.111 0.00 0.00 0.00 6.13
2450 2964 5.008019 CAGGCAGTATAATTGCAAGGTACAG 59.992 44.000 4.94 6.07 43.28 2.74
2473 3071 3.472652 AGAATTTGACGCTTGGTACACA 58.527 40.909 0.00 0.00 39.29 3.72
2474 3072 4.213482 AGAAGAATTTGACGCTTGGTACAC 59.787 41.667 0.00 0.00 39.29 2.90
2483 3081 3.820777 AGCAGAAGAAGAATTTGACGC 57.179 42.857 0.00 0.00 0.00 5.19
2491 3089 7.309377 CCCATAACATTTCAAGCAGAAGAAGAA 60.309 37.037 0.00 0.00 37.57 2.52
2560 3158 7.773690 TGCTATAATCAGCATACTATAGGACGA 59.226 37.037 4.43 0.00 46.41 4.20
2561 3159 7.931275 TGCTATAATCAGCATACTATAGGACG 58.069 38.462 4.43 0.00 46.41 4.79
2585 3191 5.763204 ACTGTATGTACCAAAAGGAACTGTG 59.237 40.000 0.00 0.00 40.86 3.66
2586 3192 5.937111 ACTGTATGTACCAAAAGGAACTGT 58.063 37.500 0.00 0.00 40.86 3.55
2600 3206 6.953101 TGGCTCAATTTAGGAACTGTATGTA 58.047 36.000 0.00 0.00 41.52 2.29
2632 3238 3.443681 TGCTCAACTGGCTTAATTTAGGC 59.556 43.478 10.80 10.80 40.84 3.93
2664 3291 5.010112 TGAGTCGATCCAAAGTCCATCTATC 59.990 44.000 0.00 0.00 0.00 2.08
2665 3292 4.895889 TGAGTCGATCCAAAGTCCATCTAT 59.104 41.667 0.00 0.00 0.00 1.98
2666 3293 4.098044 GTGAGTCGATCCAAAGTCCATCTA 59.902 45.833 0.00 0.00 0.00 1.98
2682 3309 3.060761 CACGTGTGATTATTGGTGAGTCG 59.939 47.826 7.58 0.00 0.00 4.18
2693 3320 1.809547 CCAACCATGCACGTGTGATTA 59.190 47.619 18.38 0.00 0.00 1.75
2748 3375 9.720769 ACGACTATTTAAGAAAAATCTTCTGGA 57.279 29.630 0.00 0.00 0.00 3.86
2878 3510 9.685276 TGGATAAAAACATCAACATCAGATACT 57.315 29.630 0.00 0.00 0.00 2.12
2906 3540 4.965814 ACACATCCATAGAAGGCTGTATG 58.034 43.478 9.27 9.27 35.94 2.39
3134 3768 2.194271 CGAACGTTAGAGAATGGAGCC 58.806 52.381 0.00 0.00 0.00 4.70
3150 3784 3.500680 TCTTTGGAAGCAACCATACGAAC 59.499 43.478 2.86 0.00 39.82 3.95
3232 3872 0.392461 GATCACGCTGTTAGGCCCAA 60.392 55.000 0.00 0.00 0.00 4.12
3233 3873 1.220749 GATCACGCTGTTAGGCCCA 59.779 57.895 0.00 0.00 0.00 5.36
3429 4071 5.047448 TGTTAGCAGGCAGAAATTAAATGCA 60.047 36.000 10.50 0.00 41.78 3.96
3541 4183 2.892025 GCCTTGCCAATCTGGTGAT 58.108 52.632 0.00 0.00 40.46 3.06
3657 4299 4.272504 ACAAAGAACGGGATTGTATATGCG 59.727 41.667 0.00 0.00 35.63 4.73
3666 4308 4.310022 TGGGATTACAAAGAACGGGATT 57.690 40.909 0.00 0.00 0.00 3.01
3748 4390 1.933181 GAATGCATTGATCACGACCGA 59.067 47.619 18.59 0.00 0.00 4.69
3816 4458 3.490419 GGAATGCCATGACAAAGAGCATC 60.490 47.826 0.00 0.00 43.08 3.91
3918 4560 1.822990 GAGTCCATCACCCTTACGACA 59.177 52.381 0.00 0.00 0.00 4.35
3919 4561 1.822990 TGAGTCCATCACCCTTACGAC 59.177 52.381 0.00 0.00 31.12 4.34
3924 4566 1.355381 TGCAATGAGTCCATCACCCTT 59.645 47.619 0.00 0.00 41.91 3.95
3987 4629 1.903877 ATTCAGTCTCAGGTGCCGGG 61.904 60.000 2.18 0.00 0.00 5.73
3990 4632 2.680339 GCTAAATTCAGTCTCAGGTGCC 59.320 50.000 0.00 0.00 0.00 5.01
4120 4776 5.327891 GCAATGCTCTAAAGTTACTTCTGC 58.672 41.667 0.00 1.85 0.00 4.26
4229 4890 0.960364 CAACAGACCCATTCCCCACG 60.960 60.000 0.00 0.00 0.00 4.94
4242 4903 7.865385 GCAAGACAAATGGTAATTTACAACAGA 59.135 33.333 8.73 0.00 34.14 3.41
4279 4974 6.699575 ACTTGCTCAAACATAGTTTGAACT 57.300 33.333 21.36 1.60 42.91 3.01
4382 5077 0.401395 TCCCCAGGACCACAAGACTT 60.401 55.000 0.00 0.00 0.00 3.01
4393 5088 2.764128 GGCATCGAGTCCCCAGGA 60.764 66.667 0.00 0.00 0.00 3.86
4395 5090 2.721167 TTCGGCATCGAGTCCCCAG 61.721 63.158 0.00 0.00 46.75 4.45
4433 5128 5.769484 AACGTTATGATGATCCGTCTACT 57.231 39.130 0.00 0.00 0.00 2.57
4481 5176 9.970395 TCTACACTTCGTTTTTGAGATACTTTA 57.030 29.630 0.00 0.00 0.00 1.85
4492 5188 9.878599 CAGATTTTGTATCTACACTTCGTTTTT 57.121 29.630 0.00 0.00 35.64 1.94
4517 5213 4.918810 TCTCATCGTTAGCTCTATTGCA 57.081 40.909 0.00 0.00 34.99 4.08
4518 5214 5.694006 ACAATCTCATCGTTAGCTCTATTGC 59.306 40.000 0.00 0.00 0.00 3.56
4519 5215 8.978564 ATACAATCTCATCGTTAGCTCTATTG 57.021 34.615 0.00 0.00 0.00 1.90
4522 5218 8.850007 ACTATACAATCTCATCGTTAGCTCTA 57.150 34.615 0.00 0.00 0.00 2.43
4542 5238 9.890629 ACAATCAGCTAACTTCAATTGACTATA 57.109 29.630 7.89 0.68 0.00 1.31
4566 5262 9.502091 GGCTTTACATCCTGAACATATAATACA 57.498 33.333 0.00 0.00 0.00 2.29
4608 5304 8.767085 CGACTTTAGACAACAATTTAACCACTA 58.233 33.333 0.00 0.00 0.00 2.74
4610 5306 6.854381 CCGACTTTAGACAACAATTTAACCAC 59.146 38.462 0.00 0.00 0.00 4.16
4621 5317 6.145209 GTCTACCTTTTCCGACTTTAGACAAC 59.855 42.308 0.00 0.00 35.87 3.32
4633 5349 0.981943 AGGGGTGTCTACCTTTTCCG 59.018 55.000 0.00 0.00 46.66 4.30
4643 5359 4.811063 GCTGAAATTTAGGAAGGGGTGTCT 60.811 45.833 0.00 0.00 0.00 3.41
4651 5367 5.126707 AGGCAAGATGCTGAAATTTAGGAAG 59.873 40.000 2.00 0.00 44.28 3.46
4678 5394 7.614494 ACTGCAGGACAAATTAATAGCAAAAT 58.386 30.769 19.93 0.00 0.00 1.82
4745 5461 5.926214 TTCTGGATAGATACTTCTCGTCG 57.074 43.478 0.00 0.00 33.17 5.12
4799 5517 2.427095 GCTTTTGTGTGTCCCAACTTCT 59.573 45.455 0.00 0.00 0.00 2.85
4832 5550 4.947388 TGGTACAATTCTGCCCTATTTCAC 59.053 41.667 0.00 0.00 31.92 3.18
4835 5553 4.929479 TGTGGTACAATTCTGCCCTATTT 58.071 39.130 0.00 0.00 44.16 1.40
4842 5560 1.135575 GCTGCTGTGGTACAATTCTGC 60.136 52.381 0.00 0.00 44.16 4.26
4879 5601 3.681835 GAGGTCTGCCCGTGACGT 61.682 66.667 3.64 0.00 38.74 4.34
4905 5627 7.365741 TCAGTCTGAAAATCATTTTCTTCAGC 58.634 34.615 20.98 9.40 47.00 4.26
4914 5636 7.040823 GGAAGTTGTCTCAGTCTGAAAATCATT 60.041 37.037 3.67 0.00 0.00 2.57
4919 5641 5.359194 AGGAAGTTGTCTCAGTCTGAAAA 57.641 39.130 3.67 0.00 0.00 2.29
4928 5650 6.672266 AAATCTCACTAGGAAGTTGTCTCA 57.328 37.500 0.00 0.00 31.97 3.27
4955 5677 4.030865 CGAAAACCACCGAAAAACAAGTTC 59.969 41.667 0.00 0.00 0.00 3.01
4967 5689 2.476821 ACTGTACTTCGAAAACCACCG 58.523 47.619 0.00 0.00 0.00 4.94
4981 5705 5.718724 ACCTCTGGTAAACTGTACTGTAC 57.281 43.478 10.98 10.98 32.11 2.90
4982 5706 6.546484 ACTACCTCTGGTAAACTGTACTGTA 58.454 40.000 5.76 0.00 37.76 2.74
4983 5707 5.392125 ACTACCTCTGGTAAACTGTACTGT 58.608 41.667 0.00 0.00 37.76 3.55
4984 5708 5.979288 ACTACCTCTGGTAAACTGTACTG 57.021 43.478 0.00 0.00 37.76 2.74
4989 5713 5.733620 TTGGTACTACCTCTGGTAAACTG 57.266 43.478 6.79 0.00 37.76 3.16
4996 5720 3.335579 GCAAGTTTGGTACTACCTCTGG 58.664 50.000 6.79 2.31 39.58 3.86
4997 5721 3.244422 TGGCAAGTTTGGTACTACCTCTG 60.244 47.826 6.79 0.00 39.58 3.35
4999 5723 3.335579 CTGGCAAGTTTGGTACTACCTC 58.664 50.000 6.79 0.00 39.58 3.85
5008 5732 1.181098 CCCTGTCCTGGCAAGTTTGG 61.181 60.000 0.00 0.00 0.00 3.28
5020 5744 0.036294 GTAGGTTGTCTGCCCTGTCC 60.036 60.000 0.00 0.00 32.08 4.02
5028 5756 4.808414 TGATCTCAAGGTAGGTTGTCTG 57.192 45.455 0.00 0.00 0.00 3.51
5034 5762 8.820831 CCTTCATTATATGATCTCAAGGTAGGT 58.179 37.037 0.00 0.00 39.39 3.08
5051 5779 5.869579 ACATCAATAGACGCCCTTCATTAT 58.130 37.500 0.00 0.00 0.00 1.28
5057 5785 2.238646 TGGAACATCAATAGACGCCCTT 59.761 45.455 0.00 0.00 0.00 3.95
5066 5794 5.300034 GCAGGATGAACATGGAACATCAATA 59.700 40.000 21.37 0.00 41.82 1.90
5068 5796 3.444742 GCAGGATGAACATGGAACATCAA 59.555 43.478 21.37 0.00 41.82 2.57
5144 5872 2.140717 GGGTTCAGTGTTTCCGTACTG 58.859 52.381 0.00 0.00 44.31 2.74
5150 5878 0.106419 TGTGGGGGTTCAGTGTTTCC 60.106 55.000 0.00 0.00 0.00 3.13
5151 5879 1.770294 TTGTGGGGGTTCAGTGTTTC 58.230 50.000 0.00 0.00 0.00 2.78
5167 5895 7.055667 TCACTTCAGAGTTCAGTCTATTTGT 57.944 36.000 0.00 0.00 32.54 2.83
5169 5897 7.957002 TCTTCACTTCAGAGTTCAGTCTATTT 58.043 34.615 0.00 0.00 32.54 1.40
5171 5899 7.531857 TTCTTCACTTCAGAGTTCAGTCTAT 57.468 36.000 0.00 0.00 32.54 1.98
5181 5909 5.238214 CCCTTCAGTTTTCTTCACTTCAGAG 59.762 44.000 0.00 0.00 0.00 3.35
5182 5910 5.104527 TCCCTTCAGTTTTCTTCACTTCAGA 60.105 40.000 0.00 0.00 0.00 3.27
5183 5911 5.126067 TCCCTTCAGTTTTCTTCACTTCAG 58.874 41.667 0.00 0.00 0.00 3.02
5184 5912 5.110814 TCCCTTCAGTTTTCTTCACTTCA 57.889 39.130 0.00 0.00 0.00 3.02
5185 5913 5.221067 GGTTCCCTTCAGTTTTCTTCACTTC 60.221 44.000 0.00 0.00 0.00 3.01
5186 5914 4.645136 GGTTCCCTTCAGTTTTCTTCACTT 59.355 41.667 0.00 0.00 0.00 3.16
5187 5915 4.207955 GGTTCCCTTCAGTTTTCTTCACT 58.792 43.478 0.00 0.00 0.00 3.41
5196 5924 1.068121 CCTCTGGGTTCCCTTCAGTT 58.932 55.000 9.43 0.00 0.00 3.16
5201 5929 0.193574 TCTGTCCTCTGGGTTCCCTT 59.806 55.000 9.43 0.00 0.00 3.95
5203 5931 1.268283 CCTCTGTCCTCTGGGTTCCC 61.268 65.000 0.12 0.12 0.00 3.97
5291 6076 2.954753 GACGCCGCAGTCCAACAAG 61.955 63.158 4.60 0.00 35.22 3.16
5342 6127 4.537433 GAGGCGGGCGAGCTGATT 62.537 66.667 0.00 0.00 37.29 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.