Multiple sequence alignment - TraesCS1B01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G225200 chr1B 100.000 3005 0 0 651 3655 404302538 404299534 0.000000e+00 5550
1 TraesCS1B01G225200 chr1B 94.667 450 22 1 3208 3655 342054620 342055069 0.000000e+00 697
2 TraesCS1B01G225200 chr1B 100.000 231 0 0 1 231 404303188 404302958 9.380000e-116 427
3 TraesCS1B01G225200 chr1A 90.363 2480 144 43 651 3066 374169549 374167101 0.000000e+00 3168
4 TraesCS1B01G225200 chr1D 94.514 1276 65 3 651 1923 299811783 299810510 0.000000e+00 1964
5 TraesCS1B01G225200 chr1D 88.860 1167 69 30 1922 3068 299810479 299809354 0.000000e+00 1378
6 TraesCS1B01G225200 chr1D 97.835 231 5 0 1 231 203441230 203441460 2.040000e-107 399
7 TraesCS1B01G225200 chr1D 94.631 149 7 1 3060 3208 381069329 381069476 2.840000e-56 230
8 TraesCS1B01G225200 chr6B 93.527 448 26 1 3208 3655 349655929 349656373 0.000000e+00 664
9 TraesCS1B01G225200 chr6B 93.333 450 24 3 3208 3655 349679762 349680207 0.000000e+00 660
10 TraesCS1B01G225200 chr5D 92.489 466 31 2 3194 3655 205628037 205628502 0.000000e+00 664
11 TraesCS1B01G225200 chr5D 98.268 231 4 0 1 231 503998830 503999060 4.390000e-109 405
12 TraesCS1B01G225200 chr5D 96.943 229 7 0 1 229 84891658 84891430 5.730000e-103 385
13 TraesCS1B01G225200 chr4A 93.172 454 24 6 3193 3644 254842066 254842514 0.000000e+00 660
14 TraesCS1B01G225200 chr7D 92.625 461 28 4 3193 3649 350065233 350065691 0.000000e+00 658
15 TraesCS1B01G225200 chr7A 93.096 449 29 1 3198 3644 452730343 452729895 0.000000e+00 656
16 TraesCS1B01G225200 chr7A 90.833 480 30 11 3184 3655 240672305 240671832 6.660000e-177 630
17 TraesCS1B01G225200 chr7A 85.052 582 70 15 3068 3644 286503547 286502978 8.800000e-161 577
18 TraesCS1B01G225200 chr7A 97.183 142 4 0 3067 3208 442001232 442001091 1.310000e-59 241
19 TraesCS1B01G225200 chr2B 93.126 451 23 5 3208 3655 332285837 332285392 0.000000e+00 654
20 TraesCS1B01G225200 chr2B 96.479 142 3 2 3069 3210 798011296 798011435 2.190000e-57 233
21 TraesCS1B01G225200 chr6D 92.889 450 30 1 3197 3644 69587649 69588098 0.000000e+00 652
22 TraesCS1B01G225200 chr6D 97.143 140 3 1 3069 3208 461322427 461322289 6.100000e-58 235
23 TraesCS1B01G225200 chr6D 94.079 152 8 1 3058 3208 6044521 6044370 2.840000e-56 230
24 TraesCS1B01G225200 chr2D 92.291 454 31 3 3198 3649 236439783 236440234 3.080000e-180 641
25 TraesCS1B01G225200 chr2D 98.701 231 3 0 1 231 434348184 434348414 9.450000e-111 411
26 TraesCS1B01G225200 chr2D 97.403 231 6 0 1 231 217473891 217473661 9.510000e-106 394
27 TraesCS1B01G225200 chr2D 93.548 155 7 3 3055 3208 395317641 395317489 1.020000e-55 228
28 TraesCS1B01G225200 chr4D 91.649 467 32 6 3194 3655 419535753 419535289 1.110000e-179 640
29 TraesCS1B01G225200 chr6A 100.000 231 0 0 1 231 614592080 614591850 9.380000e-116 427
30 TraesCS1B01G225200 chr7B 99.567 231 1 0 1 231 6906632 6906402 4.360000e-114 422
31 TraesCS1B01G225200 chr7B 96.970 231 7 0 1 231 23069702 23069932 4.430000e-104 388
32 TraesCS1B01G225200 chr7B 97.163 141 4 0 3068 3208 450912086 450911946 4.720000e-59 239
33 TraesCS1B01G225200 chr4B 96.970 231 7 0 1 231 614049376 614049606 4.430000e-104 388
34 TraesCS1B01G225200 chr5A 89.764 254 16 7 3068 3313 308506768 308506517 2.120000e-82 316


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G225200 chr1B 404299534 404303188 3654 True 2988.5 5550 100.000 1 3655 2 chr1B.!!$R1 3654
1 TraesCS1B01G225200 chr1A 374167101 374169549 2448 True 3168.0 3168 90.363 651 3066 1 chr1A.!!$R1 2415
2 TraesCS1B01G225200 chr1D 299809354 299811783 2429 True 1671.0 1964 91.687 651 3068 2 chr1D.!!$R1 2417
3 TraesCS1B01G225200 chr7A 286502978 286503547 569 True 577.0 577 85.052 3068 3644 1 chr7A.!!$R2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.030369 CCGGGTTTATCGAGGAGACG 59.970 60.0 0.00 0.00 0.00 4.18 F
65 66 0.040425 ACGGCGTCATGTTTTTGAGC 60.040 50.0 6.77 0.00 0.00 4.26 F
66 67 0.040514 CGGCGTCATGTTTTTGAGCA 60.041 50.0 0.00 0.00 0.00 4.26 F
142 143 0.167251 GCCAACGTACGATGGTTTGG 59.833 55.0 35.50 29.25 39.80 3.28 F
143 144 0.167251 CCAACGTACGATGGTTTGGC 59.833 55.0 30.26 0.00 33.98 4.52 F
1302 1315 0.806102 CTGGGCAGGTGACGTTATCG 60.806 60.0 0.00 0.00 43.34 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1297 1.216977 CGATAACGTCACCTGCCCA 59.783 57.895 0.0 0.0 34.56 5.36 R
1288 1301 1.520787 GGGGCGATAACGTCACCTG 60.521 63.158 0.0 0.0 46.58 4.00 R
1906 1930 1.623542 AAGTATGGGGGAGTGCGTCC 61.624 60.000 0.0 0.0 46.10 4.79 R
2139 2196 1.375523 GGACAGAACGTGCGGGAAT 60.376 57.895 0.0 0.0 0.00 3.01 R
2140 2197 2.029964 GGACAGAACGTGCGGGAA 59.970 61.111 0.0 0.0 0.00 3.97 R
3206 3317 0.034337 TTGAGGTCGGGTTGCTACAC 59.966 55.000 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.095032 CGTTGGCCGGGTTTATCG 58.905 61.111 2.18 0.00 0.00 2.92
18 19 1.448189 CGTTGGCCGGGTTTATCGA 60.448 57.895 2.18 0.00 0.00 3.59
19 20 1.426041 CGTTGGCCGGGTTTATCGAG 61.426 60.000 2.18 0.00 0.00 4.04
20 21 1.093496 GTTGGCCGGGTTTATCGAGG 61.093 60.000 2.18 0.00 0.00 4.63
21 22 1.266160 TTGGCCGGGTTTATCGAGGA 61.266 55.000 2.18 0.00 0.00 3.71
22 23 1.069258 GGCCGGGTTTATCGAGGAG 59.931 63.158 2.18 0.00 0.00 3.69
23 24 1.397390 GGCCGGGTTTATCGAGGAGA 61.397 60.000 2.18 0.00 0.00 3.71
24 25 0.249363 GCCGGGTTTATCGAGGAGAC 60.249 60.000 2.18 0.00 0.00 3.36
25 26 0.030369 CCGGGTTTATCGAGGAGACG 59.970 60.000 0.00 0.00 0.00 4.18
26 27 1.019673 CGGGTTTATCGAGGAGACGA 58.980 55.000 0.00 0.00 46.04 4.20
27 28 1.402968 CGGGTTTATCGAGGAGACGAA 59.597 52.381 0.00 0.00 45.16 3.85
28 29 2.541178 CGGGTTTATCGAGGAGACGAAG 60.541 54.545 0.00 0.00 45.16 3.79
29 30 2.686915 GGGTTTATCGAGGAGACGAAGA 59.313 50.000 0.00 0.00 45.16 2.87
30 31 3.243134 GGGTTTATCGAGGAGACGAAGAG 60.243 52.174 0.00 0.00 45.16 2.85
31 32 3.243134 GGTTTATCGAGGAGACGAAGAGG 60.243 52.174 0.00 0.00 45.16 3.69
32 33 1.595466 TATCGAGGAGACGAAGAGGC 58.405 55.000 0.00 0.00 45.16 4.70
33 34 0.106918 ATCGAGGAGACGAAGAGGCT 60.107 55.000 0.00 0.00 45.16 4.58
34 35 0.540454 TCGAGGAGACGAAGAGGCTA 59.460 55.000 0.00 0.00 39.26 3.93
35 36 1.141254 TCGAGGAGACGAAGAGGCTAT 59.859 52.381 0.00 0.00 39.26 2.97
36 37 1.950909 CGAGGAGACGAAGAGGCTATT 59.049 52.381 0.00 0.00 39.26 1.73
37 38 2.287308 CGAGGAGACGAAGAGGCTATTG 60.287 54.545 0.00 0.00 39.26 1.90
38 39 1.410882 AGGAGACGAAGAGGCTATTGC 59.589 52.381 0.00 0.00 39.26 3.56
39 40 1.137086 GGAGACGAAGAGGCTATTGCA 59.863 52.381 0.00 0.00 39.26 4.08
40 41 2.224161 GGAGACGAAGAGGCTATTGCAT 60.224 50.000 0.00 0.00 39.26 3.96
41 42 2.799412 GAGACGAAGAGGCTATTGCATG 59.201 50.000 0.00 0.00 39.26 4.06
42 43 1.869767 GACGAAGAGGCTATTGCATGG 59.130 52.381 0.00 0.00 41.91 3.66
43 44 1.486310 ACGAAGAGGCTATTGCATGGA 59.514 47.619 0.00 0.00 41.91 3.41
44 45 2.141517 CGAAGAGGCTATTGCATGGAG 58.858 52.381 0.00 0.00 41.91 3.86
45 46 2.484417 CGAAGAGGCTATTGCATGGAGT 60.484 50.000 0.00 0.00 41.91 3.85
46 47 3.243873 CGAAGAGGCTATTGCATGGAGTA 60.244 47.826 0.00 0.00 41.91 2.59
47 48 3.760580 AGAGGCTATTGCATGGAGTAC 57.239 47.619 0.66 0.00 41.91 2.73
48 49 2.036475 AGAGGCTATTGCATGGAGTACG 59.964 50.000 0.66 0.00 41.91 3.67
49 50 1.070758 AGGCTATTGCATGGAGTACGG 59.929 52.381 0.66 0.00 41.91 4.02
50 51 0.868406 GCTATTGCATGGAGTACGGC 59.132 55.000 0.00 0.00 39.41 5.68
51 52 1.139989 CTATTGCATGGAGTACGGCG 58.860 55.000 4.80 4.80 0.00 6.46
52 53 0.462375 TATTGCATGGAGTACGGCGT 59.538 50.000 19.64 19.64 0.00 5.68
53 54 0.810031 ATTGCATGGAGTACGGCGTC 60.810 55.000 19.21 8.74 0.00 5.19
54 55 2.161078 TTGCATGGAGTACGGCGTCA 62.161 55.000 19.21 9.06 0.00 4.35
55 56 1.227263 GCATGGAGTACGGCGTCAT 60.227 57.895 19.21 11.38 0.00 3.06
56 57 1.490693 GCATGGAGTACGGCGTCATG 61.491 60.000 25.93 25.93 38.46 3.07
57 58 0.179111 CATGGAGTACGGCGTCATGT 60.179 55.000 23.44 7.08 32.86 3.21
58 59 0.535335 ATGGAGTACGGCGTCATGTT 59.465 50.000 19.21 0.00 0.00 2.71
59 60 0.319083 TGGAGTACGGCGTCATGTTT 59.681 50.000 19.21 0.00 0.00 2.83
60 61 1.270412 TGGAGTACGGCGTCATGTTTT 60.270 47.619 19.21 0.00 0.00 2.43
61 62 1.802365 GGAGTACGGCGTCATGTTTTT 59.198 47.619 19.21 0.00 0.00 1.94
62 63 2.412325 GGAGTACGGCGTCATGTTTTTG 60.412 50.000 19.21 0.00 0.00 2.44
63 64 2.477375 GAGTACGGCGTCATGTTTTTGA 59.523 45.455 19.21 0.00 0.00 2.69
64 65 2.478894 AGTACGGCGTCATGTTTTTGAG 59.521 45.455 19.21 0.00 0.00 3.02
65 66 0.040425 ACGGCGTCATGTTTTTGAGC 60.040 50.000 6.77 0.00 0.00 4.26
66 67 0.040514 CGGCGTCATGTTTTTGAGCA 60.041 50.000 0.00 0.00 0.00 4.26
67 68 1.408422 GGCGTCATGTTTTTGAGCAC 58.592 50.000 0.00 0.00 0.00 4.40
68 69 1.044725 GCGTCATGTTTTTGAGCACG 58.955 50.000 0.00 0.00 0.00 5.34
69 70 1.596954 GCGTCATGTTTTTGAGCACGT 60.597 47.619 0.00 0.00 0.00 4.49
70 71 2.298300 CGTCATGTTTTTGAGCACGTC 58.702 47.619 0.00 0.00 0.00 4.34
71 72 2.650608 GTCATGTTTTTGAGCACGTCC 58.349 47.619 0.00 0.00 0.00 4.79
72 73 1.262950 TCATGTTTTTGAGCACGTCCG 59.737 47.619 0.00 0.00 0.00 4.79
73 74 1.262950 CATGTTTTTGAGCACGTCCGA 59.737 47.619 0.00 0.00 0.00 4.55
74 75 0.653636 TGTTTTTGAGCACGTCCGAC 59.346 50.000 0.00 0.00 0.00 4.79
88 89 4.444024 CGACGCACGGCCAACATG 62.444 66.667 2.24 0.00 38.46 3.21
89 90 4.101790 GACGCACGGCCAACATGG 62.102 66.667 2.24 0.00 41.55 3.66
98 99 4.132441 CCAACATGGCCGCGCATT 62.132 61.111 8.75 0.00 0.00 3.56
99 100 2.881827 CAACATGGCCGCGCATTG 60.882 61.111 8.75 0.00 0.00 2.82
100 101 4.799824 AACATGGCCGCGCATTGC 62.800 61.111 8.75 6.61 41.47 3.56
102 103 4.578898 CATGGCCGCGCATTGCAT 62.579 61.111 8.75 0.83 46.97 3.96
103 104 4.578898 ATGGCCGCGCATTGCATG 62.579 61.111 8.75 0.00 46.97 4.06
107 108 4.918129 CCGCGCATTGCATGGCTC 62.918 66.667 8.75 0.00 46.97 4.70
108 109 4.182315 CGCGCATTGCATGGCTCA 62.182 61.111 8.75 0.00 46.97 4.26
109 110 2.182284 GCGCATTGCATGGCTCAA 59.818 55.556 9.69 0.00 45.45 3.02
110 111 1.446445 GCGCATTGCATGGCTCAAA 60.446 52.632 9.69 0.00 45.45 2.69
111 112 1.418342 GCGCATTGCATGGCTCAAAG 61.418 55.000 9.69 0.00 45.45 2.77
112 113 0.171679 CGCATTGCATGGCTCAAAGA 59.828 50.000 9.69 0.00 0.00 2.52
113 114 1.797713 CGCATTGCATGGCTCAAAGAG 60.798 52.381 9.69 0.00 0.00 2.85
114 115 1.470979 GCATTGCATGGCTCAAAGAGG 60.471 52.381 3.15 0.00 0.00 3.69
115 116 2.097036 CATTGCATGGCTCAAAGAGGA 58.903 47.619 0.00 0.00 0.00 3.71
116 117 1.538047 TTGCATGGCTCAAAGAGGAC 58.462 50.000 0.00 0.00 0.00 3.85
117 118 0.674581 TGCATGGCTCAAAGAGGACG 60.675 55.000 0.00 0.00 0.00 4.79
118 119 0.674895 GCATGGCTCAAAGAGGACGT 60.675 55.000 0.00 0.00 0.00 4.34
119 120 1.405526 GCATGGCTCAAAGAGGACGTA 60.406 52.381 0.00 0.00 0.00 3.57
120 121 2.271800 CATGGCTCAAAGAGGACGTAC 58.728 52.381 0.00 0.00 0.00 3.67
121 122 1.629043 TGGCTCAAAGAGGACGTACT 58.371 50.000 0.00 0.00 0.00 2.73
122 123 2.799017 TGGCTCAAAGAGGACGTACTA 58.201 47.619 0.00 0.00 0.00 1.82
123 124 2.753452 TGGCTCAAAGAGGACGTACTAG 59.247 50.000 0.00 0.00 0.00 2.57
124 125 2.479901 GGCTCAAAGAGGACGTACTAGC 60.480 54.545 10.50 10.50 0.00 3.42
125 126 2.479901 GCTCAAAGAGGACGTACTAGCC 60.480 54.545 0.00 0.00 0.00 3.93
126 127 2.753452 CTCAAAGAGGACGTACTAGCCA 59.247 50.000 0.00 0.00 0.00 4.75
127 128 3.159472 TCAAAGAGGACGTACTAGCCAA 58.841 45.455 0.00 0.00 0.00 4.52
128 129 3.057033 TCAAAGAGGACGTACTAGCCAAC 60.057 47.826 0.00 0.00 0.00 3.77
129 130 1.093159 AGAGGACGTACTAGCCAACG 58.907 55.000 0.00 10.34 44.47 4.10
137 138 2.724349 GTACTAGCCAACGTACGATGG 58.276 52.381 33.12 33.12 40.48 3.51
138 139 1.180029 ACTAGCCAACGTACGATGGT 58.820 50.000 35.50 26.35 39.80 3.55
139 140 1.547372 ACTAGCCAACGTACGATGGTT 59.453 47.619 35.50 33.02 39.80 3.67
140 141 2.028748 ACTAGCCAACGTACGATGGTTT 60.029 45.455 35.50 27.69 39.80 3.27
141 142 1.153353 AGCCAACGTACGATGGTTTG 58.847 50.000 35.50 22.58 39.80 2.93
142 143 0.167251 GCCAACGTACGATGGTTTGG 59.833 55.000 35.50 29.25 39.80 3.28
143 144 0.167251 CCAACGTACGATGGTTTGGC 59.833 55.000 30.26 0.00 33.98 4.52
144 145 1.153353 CAACGTACGATGGTTTGGCT 58.847 50.000 24.41 0.00 0.00 4.75
145 146 1.136085 CAACGTACGATGGTTTGGCTG 60.136 52.381 24.41 0.00 0.00 4.85
146 147 1.296056 ACGTACGATGGTTTGGCTGC 61.296 55.000 24.41 0.00 0.00 5.25
147 148 1.295357 CGTACGATGGTTTGGCTGCA 61.295 55.000 10.44 0.00 0.00 4.41
148 149 0.878416 GTACGATGGTTTGGCTGCAA 59.122 50.000 0.50 0.00 0.00 4.08
149 150 1.135689 GTACGATGGTTTGGCTGCAAG 60.136 52.381 0.50 0.00 0.00 4.01
160 161 2.044252 CTGCAAGCTGGGCCTGAT 60.044 61.111 15.36 4.63 0.00 2.90
161 162 2.361992 TGCAAGCTGGGCCTGATG 60.362 61.111 15.36 12.67 0.00 3.07
162 163 2.044650 GCAAGCTGGGCCTGATGA 60.045 61.111 15.36 0.00 0.00 2.92
163 164 1.455217 GCAAGCTGGGCCTGATGAT 60.455 57.895 15.36 0.00 0.00 2.45
164 165 1.041447 GCAAGCTGGGCCTGATGATT 61.041 55.000 15.36 0.00 0.00 2.57
165 166 1.481871 CAAGCTGGGCCTGATGATTT 58.518 50.000 15.36 0.00 0.00 2.17
166 167 2.658285 CAAGCTGGGCCTGATGATTTA 58.342 47.619 15.36 0.00 0.00 1.40
167 168 3.228453 CAAGCTGGGCCTGATGATTTAT 58.772 45.455 15.36 0.00 0.00 1.40
168 169 2.872732 AGCTGGGCCTGATGATTTATG 58.127 47.619 15.36 0.00 0.00 1.90
169 170 2.176364 AGCTGGGCCTGATGATTTATGT 59.824 45.455 15.36 0.00 0.00 2.29
170 171 2.961062 GCTGGGCCTGATGATTTATGTT 59.039 45.455 15.36 0.00 0.00 2.71
171 172 3.005155 GCTGGGCCTGATGATTTATGTTC 59.995 47.826 15.36 0.00 0.00 3.18
172 173 4.467769 CTGGGCCTGATGATTTATGTTCT 58.532 43.478 4.53 0.00 0.00 3.01
173 174 5.624159 CTGGGCCTGATGATTTATGTTCTA 58.376 41.667 4.53 0.00 0.00 2.10
174 175 6.204852 TGGGCCTGATGATTTATGTTCTAT 57.795 37.500 4.53 0.00 0.00 1.98
175 176 6.613699 TGGGCCTGATGATTTATGTTCTATT 58.386 36.000 4.53 0.00 0.00 1.73
176 177 7.068702 TGGGCCTGATGATTTATGTTCTATTT 58.931 34.615 4.53 0.00 0.00 1.40
177 178 7.014518 TGGGCCTGATGATTTATGTTCTATTTG 59.985 37.037 4.53 0.00 0.00 2.32
178 179 7.014615 GGGCCTGATGATTTATGTTCTATTTGT 59.985 37.037 0.84 0.00 0.00 2.83
179 180 7.864379 GGCCTGATGATTTATGTTCTATTTGTG 59.136 37.037 0.00 0.00 0.00 3.33
180 181 8.623903 GCCTGATGATTTATGTTCTATTTGTGA 58.376 33.333 0.00 0.00 0.00 3.58
189 190 9.658475 TTTATGTTCTATTTGTGAAAACGAGTG 57.342 29.630 0.00 0.00 0.00 3.51
190 191 6.671614 TGTTCTATTTGTGAAAACGAGTGT 57.328 33.333 0.00 0.00 0.00 3.55
191 192 7.773864 TGTTCTATTTGTGAAAACGAGTGTA 57.226 32.000 0.00 0.00 0.00 2.90
192 193 7.623770 TGTTCTATTTGTGAAAACGAGTGTAC 58.376 34.615 0.00 0.00 0.00 2.90
193 194 7.278203 TGTTCTATTTGTGAAAACGAGTGTACA 59.722 33.333 0.00 0.00 0.00 2.90
194 195 7.773864 TCTATTTGTGAAAACGAGTGTACAA 57.226 32.000 0.00 0.00 0.00 2.41
195 196 8.199176 TCTATTTGTGAAAACGAGTGTACAAA 57.801 30.769 0.00 11.87 40.78 2.83
196 197 8.117988 TCTATTTGTGAAAACGAGTGTACAAAC 58.882 33.333 0.00 0.00 39.78 2.93
197 198 5.608676 TTGTGAAAACGAGTGTACAAACA 57.391 34.783 0.00 0.00 0.00 2.83
198 199 5.804692 TGTGAAAACGAGTGTACAAACAT 57.195 34.783 0.00 0.00 38.08 2.71
199 200 6.184580 TGTGAAAACGAGTGTACAAACATT 57.815 33.333 0.00 0.00 38.08 2.71
200 201 7.304919 TGTGAAAACGAGTGTACAAACATTA 57.695 32.000 0.00 0.00 38.08 1.90
201 202 7.181418 TGTGAAAACGAGTGTACAAACATTAC 58.819 34.615 0.00 0.00 38.08 1.89
202 203 7.064847 TGTGAAAACGAGTGTACAAACATTACT 59.935 33.333 0.00 0.00 38.08 2.24
203 204 7.906527 GTGAAAACGAGTGTACAAACATTACTT 59.093 33.333 0.00 0.00 38.08 2.24
204 205 9.096160 TGAAAACGAGTGTACAAACATTACTTA 57.904 29.630 0.00 0.00 38.08 2.24
205 206 9.919348 GAAAACGAGTGTACAAACATTACTTAA 57.081 29.630 0.00 0.00 38.08 1.85
225 226 8.895932 ACTTAATTAATGAATGCTCGTTTCAC 57.104 30.769 0.00 0.00 36.02 3.18
226 227 7.968405 ACTTAATTAATGAATGCTCGTTTCACC 59.032 33.333 0.00 0.00 36.02 4.02
227 228 4.695217 TTAATGAATGCTCGTTTCACCC 57.305 40.909 0.00 0.00 36.02 4.61
228 229 1.086696 ATGAATGCTCGTTTCACCCG 58.913 50.000 0.00 0.00 36.02 5.28
229 230 1.134694 GAATGCTCGTTTCACCCGC 59.865 57.895 0.00 0.00 0.00 6.13
230 231 1.573829 GAATGCTCGTTTCACCCGCA 61.574 55.000 0.00 0.00 34.83 5.69
682 683 4.963373 TGTACGACCAGGAAAGATTTGAA 58.037 39.130 0.00 0.00 0.00 2.69
685 686 4.065789 ACGACCAGGAAAGATTTGAAGAC 58.934 43.478 0.00 0.00 0.00 3.01
721 722 6.351033 GGTCGAGAATATATGGCATCTGGTTA 60.351 42.308 1.65 0.00 0.00 2.85
725 726 7.363355 CGAGAATATATGGCATCTGGTTACTCT 60.363 40.741 1.65 0.00 0.00 3.24
733 734 4.045104 GCATCTGGTTACTCTATCGTGTG 58.955 47.826 0.00 0.00 0.00 3.82
802 811 9.672086 CACTTGTTCTCTTACTATATCTAGTGC 57.328 37.037 1.17 0.00 38.65 4.40
838 847 2.119801 AGTGTCCTTGTGATGCATCC 57.880 50.000 23.67 15.02 0.00 3.51
849 858 3.949754 TGTGATGCATCCTTCATTCTTCC 59.050 43.478 23.67 0.00 0.00 3.46
1035 1048 1.764454 TAGCATCCCTAGGCCGCAA 60.764 57.895 15.24 0.00 31.05 4.85
1302 1315 0.806102 CTGGGCAGGTGACGTTATCG 60.806 60.000 0.00 0.00 43.34 2.92
1451 1464 2.592861 GAGGGACATGATGGCGCC 60.593 66.667 22.73 22.73 39.46 6.53
1609 1624 1.738099 GCACGCATCGTCCTTCAGT 60.738 57.895 0.00 0.00 38.32 3.41
1650 1665 1.789078 GATGGATGGTCATGGCACGC 61.789 60.000 0.00 0.00 0.00 5.34
1798 1822 4.488911 AGCTCCCCCTCCTCGCAT 62.489 66.667 0.00 0.00 0.00 4.73
1825 1849 4.760047 CCCTCGACAAGCCCCACG 62.760 72.222 0.00 0.00 0.00 4.94
1827 1851 4.680237 CTCGACAAGCCCCACGCA 62.680 66.667 0.00 0.00 41.38 5.24
1940 1996 2.233305 TACTTCTCACTCCCCTCCAC 57.767 55.000 0.00 0.00 0.00 4.02
1947 2003 0.911525 CACTCCCCTCCACCTGACAT 60.912 60.000 0.00 0.00 0.00 3.06
1957 2013 1.198713 CACCTGACATCTAGGGCACT 58.801 55.000 0.00 0.00 39.71 4.40
1958 2014 1.556911 CACCTGACATCTAGGGCACTT 59.443 52.381 0.00 0.00 39.71 3.16
1959 2015 2.766263 CACCTGACATCTAGGGCACTTA 59.234 50.000 0.00 0.00 39.71 2.24
1960 2016 2.766828 ACCTGACATCTAGGGCACTTAC 59.233 50.000 0.00 0.00 39.71 2.34
1961 2017 2.766263 CCTGACATCTAGGGCACTTACA 59.234 50.000 0.00 0.00 0.00 2.41
1962 2018 3.430929 CCTGACATCTAGGGCACTTACAC 60.431 52.174 0.00 0.00 0.00 2.90
1963 2019 2.165641 TGACATCTAGGGCACTTACACG 59.834 50.000 0.00 0.00 0.00 4.49
1964 2020 2.165845 GACATCTAGGGCACTTACACGT 59.834 50.000 0.00 0.00 0.00 4.49
1965 2021 2.165845 ACATCTAGGGCACTTACACGTC 59.834 50.000 0.00 0.00 0.00 4.34
1966 2022 2.211250 TCTAGGGCACTTACACGTCT 57.789 50.000 0.00 0.00 0.00 4.18
1973 2030 3.387397 GGCACTTACACGTCTACACTTT 58.613 45.455 0.00 0.00 0.00 2.66
1986 2043 2.479566 ACACTTTCATGCAGGTCGAT 57.520 45.000 0.00 0.00 0.00 3.59
2110 2167 4.401202 CACGGCAAATATTAAGTTTCCCCT 59.599 41.667 0.00 0.00 0.00 4.79
2116 2173 6.629515 GCAAATATTAAGTTTCCCCTGTTCCC 60.630 42.308 0.00 0.00 0.00 3.97
2117 2174 5.806955 ATATTAAGTTTCCCCTGTTCCCA 57.193 39.130 0.00 0.00 0.00 4.37
2129 2186 2.561569 CTGTTCCCACACGTTCTCTTT 58.438 47.619 0.00 0.00 0.00 2.52
2130 2187 2.943033 CTGTTCCCACACGTTCTCTTTT 59.057 45.455 0.00 0.00 0.00 2.27
2131 2188 3.349022 TGTTCCCACACGTTCTCTTTTT 58.651 40.909 0.00 0.00 0.00 1.94
2132 2189 3.127895 TGTTCCCACACGTTCTCTTTTTG 59.872 43.478 0.00 0.00 0.00 2.44
2133 2190 3.269538 TCCCACACGTTCTCTTTTTGA 57.730 42.857 0.00 0.00 0.00 2.69
2134 2191 2.940410 TCCCACACGTTCTCTTTTTGAC 59.060 45.455 0.00 0.00 0.00 3.18
2135 2192 2.286184 CCCACACGTTCTCTTTTTGACG 60.286 50.000 0.00 0.00 0.00 4.35
2136 2193 2.286184 CCACACGTTCTCTTTTTGACGG 60.286 50.000 0.00 0.00 0.00 4.79
2137 2194 1.937899 ACACGTTCTCTTTTTGACGGG 59.062 47.619 0.00 0.00 0.00 5.28
2138 2195 0.942252 ACGTTCTCTTTTTGACGGGC 59.058 50.000 0.00 0.00 0.00 6.13
2139 2196 0.941542 CGTTCTCTTTTTGACGGGCA 59.058 50.000 0.00 0.00 0.00 5.36
2140 2197 1.535462 CGTTCTCTTTTTGACGGGCAT 59.465 47.619 0.00 0.00 0.00 4.40
2141 2198 2.031157 CGTTCTCTTTTTGACGGGCATT 60.031 45.455 0.00 0.00 0.00 3.56
2142 2199 3.565516 GTTCTCTTTTTGACGGGCATTC 58.434 45.455 0.00 0.00 0.00 2.67
2143 2200 2.159382 TCTCTTTTTGACGGGCATTCC 58.841 47.619 0.00 0.00 0.00 3.01
2152 2209 3.810896 GGGCATTCCCGCACGTTC 61.811 66.667 0.00 0.00 43.94 3.95
2153 2210 2.746277 GGCATTCCCGCACGTTCT 60.746 61.111 0.00 0.00 0.00 3.01
2154 2211 2.480555 GCATTCCCGCACGTTCTG 59.519 61.111 0.00 0.00 0.00 3.02
2155 2212 2.325082 GCATTCCCGCACGTTCTGT 61.325 57.895 0.00 0.00 0.00 3.41
2156 2213 1.787847 CATTCCCGCACGTTCTGTC 59.212 57.895 0.00 0.00 0.00 3.51
2174 2234 2.618241 TGTCCACGTACGTACTTGACTT 59.382 45.455 28.07 0.00 0.00 3.01
2391 2455 4.957327 AGACCTACTCTGAATCTTGTACCC 59.043 45.833 0.00 0.00 0.00 3.69
2399 2463 6.153680 ACTCTGAATCTTGTACCCTACTGAAG 59.846 42.308 0.00 0.00 0.00 3.02
2426 2490 2.803956 TCACTTTTTGGACCGATTCGAC 59.196 45.455 7.83 1.27 0.00 4.20
2498 2566 7.958567 GTCGACTAGTTGCACTATATCTACATC 59.041 40.741 8.70 0.00 29.08 3.06
2504 2573 7.275183 AGTTGCACTATATCTACATCTTTGCA 58.725 34.615 0.00 0.00 35.74 4.08
2621 2690 4.117661 GGAGTCGCCTTCGTCGCT 62.118 66.667 0.00 0.00 36.96 4.93
2711 2780 2.262423 AAGATAAGATGCCGGGCTTC 57.738 50.000 23.35 23.35 33.70 3.86
2769 2838 7.667635 CCTCTCTAGACCTGATTCATGTATGTA 59.332 40.741 0.21 0.00 0.00 2.29
2854 2929 0.932399 AACGACCGTGTGCTGTAAAC 59.068 50.000 0.00 0.00 0.00 2.01
2912 3004 8.862325 ACATTCAGATACTGTAATTTGAACCA 57.138 30.769 11.58 0.00 34.08 3.67
2913 3005 9.466497 ACATTCAGATACTGTAATTTGAACCAT 57.534 29.630 11.58 2.51 34.08 3.55
2916 3008 9.513906 TTCAGATACTGTAATTTGAACCATTCA 57.486 29.630 0.00 0.00 33.60 2.57
2917 3009 9.513906 TCAGATACTGTAATTTGAACCATTCAA 57.486 29.630 0.00 0.00 38.99 2.69
2937 3029 6.925610 TCAATTATCGAACCATTTGGAGAG 57.074 37.500 3.01 0.00 38.94 3.20
2959 3051 0.321919 TCCACAAGACTCTGCCATGC 60.322 55.000 0.00 0.00 0.00 4.06
2960 3052 0.607217 CCACAAGACTCTGCCATGCA 60.607 55.000 0.00 0.00 36.92 3.96
2961 3053 1.460504 CACAAGACTCTGCCATGCAT 58.539 50.000 0.00 0.00 38.13 3.96
2962 3054 1.400846 CACAAGACTCTGCCATGCATC 59.599 52.381 0.00 0.00 38.13 3.91
2963 3055 1.022735 CAAGACTCTGCCATGCATCC 58.977 55.000 0.00 0.00 38.13 3.51
2964 3056 0.622136 AAGACTCTGCCATGCATCCA 59.378 50.000 0.00 0.00 38.13 3.41
2965 3057 0.622136 AGACTCTGCCATGCATCCAA 59.378 50.000 0.00 0.00 38.13 3.53
2966 3058 1.214673 AGACTCTGCCATGCATCCAAT 59.785 47.619 0.00 0.00 38.13 3.16
2967 3059 1.337071 GACTCTGCCATGCATCCAATG 59.663 52.381 0.00 0.00 38.13 2.82
2968 3060 1.341679 ACTCTGCCATGCATCCAATGT 60.342 47.619 0.00 0.00 38.13 2.71
2970 3062 2.953648 CTCTGCCATGCATCCAATGTTA 59.046 45.455 0.00 0.00 38.13 2.41
2971 3063 3.568443 TCTGCCATGCATCCAATGTTAT 58.432 40.909 0.00 0.00 38.13 1.89
2974 3084 2.028748 GCCATGCATCCAATGTTATCCC 60.029 50.000 0.00 0.00 0.00 3.85
2979 3089 4.296912 TGCATCCAATGTTATCCCCAAAT 58.703 39.130 0.00 0.00 0.00 2.32
2992 3102 2.553770 CAAATGTCCGCGAACGCA 59.446 55.556 18.69 0.31 42.06 5.24
3073 3184 2.071778 AGCCAACCAAAAGCTGAAGA 57.928 45.000 0.00 0.00 34.99 2.87
3086 3197 7.322664 CAAAAGCTGAAGAAAATATGCCCTAA 58.677 34.615 0.00 0.00 0.00 2.69
3173 3284 9.101655 GCTAGAATTGTATTAACCGGAAACTTA 57.898 33.333 9.46 0.00 0.00 2.24
3213 3324 8.560355 ACATAGACAAAACATAATGTGTAGCA 57.440 30.769 0.00 0.00 41.14 3.49
3222 3333 0.690762 AATGTGTAGCAACCCGACCT 59.309 50.000 0.00 0.00 0.00 3.85
3223 3334 0.249398 ATGTGTAGCAACCCGACCTC 59.751 55.000 0.00 0.00 0.00 3.85
3226 3337 0.759959 TGTAGCAACCCGACCTCAAA 59.240 50.000 0.00 0.00 0.00 2.69
3227 3338 1.154197 GTAGCAACCCGACCTCAAAC 58.846 55.000 0.00 0.00 0.00 2.93
3303 3417 7.013464 ACAGTACTCGAGGATTTATAACAGAGG 59.987 40.741 18.41 0.00 0.00 3.69
3304 3418 7.013464 CAGTACTCGAGGATTTATAACAGAGGT 59.987 40.741 18.41 0.00 0.00 3.85
3305 3419 8.216423 AGTACTCGAGGATTTATAACAGAGGTA 58.784 37.037 18.41 0.00 0.00 3.08
3362 3476 7.618019 ACCTCAATCCATATAGCAGAAGTAA 57.382 36.000 0.00 0.00 0.00 2.24
3363 3477 8.212259 ACCTCAATCCATATAGCAGAAGTAAT 57.788 34.615 0.00 0.00 0.00 1.89
3370 3484 9.950496 ATCCATATAGCAGAAGTAATAACAAGG 57.050 33.333 0.00 0.00 0.00 3.61
3372 3486 9.209175 CCATATAGCAGAAGTAATAACAAGGTC 57.791 37.037 0.00 0.00 0.00 3.85
3384 3499 0.991920 ACAAGGTCGTGGATTCCCAT 59.008 50.000 0.00 0.00 45.68 4.00
3403 3518 1.178276 TCAACACCAACGGCAAAGTT 58.822 45.000 0.00 0.00 34.15 2.66
3413 3528 3.188159 ACGGCAAAGTTGAGTGTAGAA 57.812 42.857 0.00 0.00 0.00 2.10
3415 3530 4.134563 ACGGCAAAGTTGAGTGTAGAAAT 58.865 39.130 0.00 0.00 0.00 2.17
3416 3531 4.213482 ACGGCAAAGTTGAGTGTAGAAATC 59.787 41.667 0.00 0.00 0.00 2.17
3421 3536 6.790825 GCAAAGTTGAGTGTAGAAATCGTAAC 59.209 38.462 0.00 0.00 0.00 2.50
3427 3542 6.624423 TGAGTGTAGAAATCGTAACCCTAAC 58.376 40.000 0.00 0.00 0.00 2.34
3438 3553 6.942532 TCGTAACCCTAACGTATCACTTAT 57.057 37.500 0.00 0.00 41.08 1.73
3474 3589 3.059884 CTGTAACATGAGACGTTGCAGT 58.940 45.455 0.00 0.00 46.03 4.40
3475 3590 3.057019 TGTAACATGAGACGTTGCAGTC 58.943 45.455 0.00 0.00 41.23 3.51
3477 3592 1.502231 ACATGAGACGTTGCAGTCAC 58.498 50.000 0.00 3.17 43.24 3.67
3478 3593 1.202521 ACATGAGACGTTGCAGTCACA 60.203 47.619 8.30 8.30 43.61 3.58
3479 3594 1.866601 CATGAGACGTTGCAGTCACAA 59.133 47.619 9.61 0.00 42.96 3.33
3481 3596 1.933181 TGAGACGTTGCAGTCACAAAG 59.067 47.619 8.62 0.00 43.24 2.77
3485 3600 0.738389 CGTTGCAGTCACAAAGGGTT 59.262 50.000 0.00 0.00 0.00 4.11
3490 3605 3.735591 TGCAGTCACAAAGGGTTAGTAC 58.264 45.455 0.00 0.00 0.00 2.73
3495 3610 5.181245 CAGTCACAAAGGGTTAGTACATTGG 59.819 44.000 0.00 0.00 0.00 3.16
3515 3630 4.343231 TGGATGTACTGGCAAATTCACAT 58.657 39.130 0.00 0.00 0.00 3.21
3521 3636 5.589855 TGTACTGGCAAATTCACATCATAGG 59.410 40.000 0.00 0.00 0.00 2.57
3522 3637 4.858850 ACTGGCAAATTCACATCATAGGA 58.141 39.130 0.00 0.00 0.00 2.94
3527 3642 7.888424 TGGCAAATTCACATCATAGGATAATG 58.112 34.615 0.00 0.00 30.87 1.90
3560 3675 5.706833 TGCCTATCACTACATGCATATTTGG 59.293 40.000 0.00 0.00 0.00 3.28
3563 3678 5.954296 ATCACTACATGCATATTTGGCTC 57.046 39.130 0.00 0.00 0.00 4.70
3569 3684 2.121291 TGCATATTTGGCTCGTGGAA 57.879 45.000 0.00 0.00 0.00 3.53
3570 3685 2.441410 TGCATATTTGGCTCGTGGAAA 58.559 42.857 0.00 0.00 0.00 3.13
3571 3686 2.822561 TGCATATTTGGCTCGTGGAAAA 59.177 40.909 0.00 0.00 0.00 2.29
3572 3687 3.119531 TGCATATTTGGCTCGTGGAAAAG 60.120 43.478 0.00 0.00 0.00 2.27
3575 3690 0.951558 TTTGGCTCGTGGAAAAGCTC 59.048 50.000 0.00 0.00 38.58 4.09
3576 3691 0.108585 TTGGCTCGTGGAAAAGCTCT 59.891 50.000 0.00 0.00 38.58 4.09
3577 3692 0.973632 TGGCTCGTGGAAAAGCTCTA 59.026 50.000 0.00 0.00 38.58 2.43
3579 3694 2.764010 TGGCTCGTGGAAAAGCTCTATA 59.236 45.455 0.00 0.00 38.58 1.31
3580 3695 3.181475 TGGCTCGTGGAAAAGCTCTATAG 60.181 47.826 0.00 0.00 38.58 1.31
3581 3696 3.181474 GGCTCGTGGAAAAGCTCTATAGT 60.181 47.826 0.00 0.00 38.58 2.12
3582 3697 4.434520 GCTCGTGGAAAAGCTCTATAGTT 58.565 43.478 0.00 0.00 35.60 2.24
3584 3699 6.217294 GCTCGTGGAAAAGCTCTATAGTTAT 58.783 40.000 0.00 0.00 35.60 1.89
3585 3700 7.368833 GCTCGTGGAAAAGCTCTATAGTTATA 58.631 38.462 0.00 0.00 35.60 0.98
3586 3701 7.866393 GCTCGTGGAAAAGCTCTATAGTTATAA 59.134 37.037 0.00 0.00 35.60 0.98
3587 3702 9.915629 CTCGTGGAAAAGCTCTATAGTTATAAT 57.084 33.333 0.00 0.00 0.00 1.28
3588 3703 9.692749 TCGTGGAAAAGCTCTATAGTTATAATG 57.307 33.333 0.00 0.00 0.00 1.90
3589 3704 9.477484 CGTGGAAAAGCTCTATAGTTATAATGT 57.523 33.333 0.00 0.00 0.00 2.71
3597 3712 9.542462 AGCTCTATAGTTATAATGTTTTTGCGA 57.458 29.630 0.00 0.00 0.00 5.10
3618 3733 5.478407 CGAAAAGCCAATTTTTCCCTACAT 58.522 37.500 5.85 0.00 41.24 2.29
3619 3734 5.576774 CGAAAAGCCAATTTTTCCCTACATC 59.423 40.000 5.85 0.00 41.24 3.06
3627 3742 7.623630 CCAATTTTTCCCTACATCAAAGGAAT 58.376 34.615 0.00 0.00 38.17 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.426041 CTCGATAAACCCGGCCAACG 61.426 60.000 2.24 0.00 43.80 4.10
1 2 1.093496 CCTCGATAAACCCGGCCAAC 61.093 60.000 2.24 0.00 0.00 3.77
2 3 1.222387 CCTCGATAAACCCGGCCAA 59.778 57.895 2.24 0.00 0.00 4.52
3 4 1.682451 CTCCTCGATAAACCCGGCCA 61.682 60.000 2.24 0.00 0.00 5.36
4 5 1.069258 CTCCTCGATAAACCCGGCC 59.931 63.158 0.00 0.00 0.00 6.13
5 6 0.249363 GTCTCCTCGATAAACCCGGC 60.249 60.000 0.00 0.00 0.00 6.13
6 7 0.030369 CGTCTCCTCGATAAACCCGG 59.970 60.000 0.00 0.00 0.00 5.73
7 8 1.019673 TCGTCTCCTCGATAAACCCG 58.980 55.000 0.00 0.00 34.85 5.28
8 9 2.686915 TCTTCGTCTCCTCGATAAACCC 59.313 50.000 0.00 0.00 39.57 4.11
9 10 3.243134 CCTCTTCGTCTCCTCGATAAACC 60.243 52.174 0.00 0.00 39.57 3.27
10 11 3.792794 GCCTCTTCGTCTCCTCGATAAAC 60.793 52.174 0.00 0.00 39.57 2.01
11 12 2.358267 GCCTCTTCGTCTCCTCGATAAA 59.642 50.000 0.00 0.00 39.57 1.40
12 13 1.948145 GCCTCTTCGTCTCCTCGATAA 59.052 52.381 0.00 0.00 39.57 1.75
13 14 1.141254 AGCCTCTTCGTCTCCTCGATA 59.859 52.381 0.00 0.00 39.57 2.92
14 15 0.106918 AGCCTCTTCGTCTCCTCGAT 60.107 55.000 0.00 0.00 39.57 3.59
15 16 0.540454 TAGCCTCTTCGTCTCCTCGA 59.460 55.000 0.00 0.00 38.08 4.04
16 17 1.600023 ATAGCCTCTTCGTCTCCTCG 58.400 55.000 0.00 0.00 0.00 4.63
17 18 2.544903 GCAATAGCCTCTTCGTCTCCTC 60.545 54.545 0.00 0.00 33.58 3.71
18 19 1.410882 GCAATAGCCTCTTCGTCTCCT 59.589 52.381 0.00 0.00 33.58 3.69
19 20 1.137086 TGCAATAGCCTCTTCGTCTCC 59.863 52.381 0.00 0.00 41.13 3.71
20 21 2.586258 TGCAATAGCCTCTTCGTCTC 57.414 50.000 0.00 0.00 41.13 3.36
21 22 2.484417 CCATGCAATAGCCTCTTCGTCT 60.484 50.000 0.00 0.00 41.13 4.18
22 23 1.869767 CCATGCAATAGCCTCTTCGTC 59.130 52.381 0.00 0.00 41.13 4.20
23 24 1.486310 TCCATGCAATAGCCTCTTCGT 59.514 47.619 0.00 0.00 41.13 3.85
24 25 2.141517 CTCCATGCAATAGCCTCTTCG 58.858 52.381 0.00 0.00 41.13 3.79
25 26 3.205784 ACTCCATGCAATAGCCTCTTC 57.794 47.619 0.00 0.00 41.13 2.87
26 27 3.493350 CGTACTCCATGCAATAGCCTCTT 60.493 47.826 0.00 0.00 41.13 2.85
27 28 2.036475 CGTACTCCATGCAATAGCCTCT 59.964 50.000 0.00 0.00 41.13 3.69
28 29 2.408050 CGTACTCCATGCAATAGCCTC 58.592 52.381 0.00 0.00 41.13 4.70
29 30 1.070758 CCGTACTCCATGCAATAGCCT 59.929 52.381 0.00 0.00 41.13 4.58
30 31 1.512926 CCGTACTCCATGCAATAGCC 58.487 55.000 0.00 0.00 41.13 3.93
31 32 0.868406 GCCGTACTCCATGCAATAGC 59.132 55.000 0.00 0.00 42.57 2.97
32 33 1.139989 CGCCGTACTCCATGCAATAG 58.860 55.000 0.00 0.00 0.00 1.73
33 34 0.462375 ACGCCGTACTCCATGCAATA 59.538 50.000 0.00 0.00 0.00 1.90
34 35 0.810031 GACGCCGTACTCCATGCAAT 60.810 55.000 0.00 0.00 0.00 3.56
35 36 1.447140 GACGCCGTACTCCATGCAA 60.447 57.895 0.00 0.00 0.00 4.08
36 37 1.955495 ATGACGCCGTACTCCATGCA 61.955 55.000 0.00 0.00 0.00 3.96
37 38 1.227263 ATGACGCCGTACTCCATGC 60.227 57.895 0.00 0.00 0.00 4.06
38 39 0.179111 ACATGACGCCGTACTCCATG 60.179 55.000 13.19 13.19 40.12 3.66
39 40 0.535335 AACATGACGCCGTACTCCAT 59.465 50.000 0.00 0.00 0.00 3.41
40 41 0.319083 AAACATGACGCCGTACTCCA 59.681 50.000 0.00 0.00 0.00 3.86
41 42 1.435577 AAAACATGACGCCGTACTCC 58.564 50.000 0.00 0.00 0.00 3.85
42 43 2.477375 TCAAAAACATGACGCCGTACTC 59.523 45.455 0.00 0.00 0.00 2.59
43 44 2.478894 CTCAAAAACATGACGCCGTACT 59.521 45.455 0.00 0.00 0.00 2.73
44 45 2.834689 CTCAAAAACATGACGCCGTAC 58.165 47.619 0.00 0.00 0.00 3.67
45 46 1.195900 GCTCAAAAACATGACGCCGTA 59.804 47.619 0.00 0.00 0.00 4.02
46 47 0.040425 GCTCAAAAACATGACGCCGT 60.040 50.000 0.00 0.00 0.00 5.68
47 48 0.040514 TGCTCAAAAACATGACGCCG 60.041 50.000 0.00 0.00 0.00 6.46
48 49 1.408422 GTGCTCAAAAACATGACGCC 58.592 50.000 0.00 0.00 0.00 5.68
49 50 1.044725 CGTGCTCAAAAACATGACGC 58.955 50.000 0.00 0.00 0.00 5.19
50 51 2.298300 GACGTGCTCAAAAACATGACG 58.702 47.619 0.00 0.00 0.00 4.35
51 52 2.650608 GGACGTGCTCAAAAACATGAC 58.349 47.619 0.00 0.00 0.00 3.06
52 53 1.262950 CGGACGTGCTCAAAAACATGA 59.737 47.619 5.27 0.00 0.00 3.07
53 54 1.262950 TCGGACGTGCTCAAAAACATG 59.737 47.619 5.27 0.00 0.00 3.21
54 55 1.263217 GTCGGACGTGCTCAAAAACAT 59.737 47.619 5.27 0.00 0.00 2.71
55 56 0.653636 GTCGGACGTGCTCAAAAACA 59.346 50.000 5.27 0.00 0.00 2.83
56 57 0.382636 CGTCGGACGTGCTCAAAAAC 60.383 55.000 21.68 0.00 36.74 2.43
57 58 1.928653 CGTCGGACGTGCTCAAAAA 59.071 52.632 21.68 0.00 36.74 1.94
58 59 2.591311 GCGTCGGACGTGCTCAAAA 61.591 57.895 28.75 0.00 44.73 2.44
59 60 3.033764 GCGTCGGACGTGCTCAAA 61.034 61.111 28.75 0.00 44.73 2.69
60 61 4.273257 TGCGTCGGACGTGCTCAA 62.273 61.111 28.75 7.97 44.73 3.02
61 62 4.994201 GTGCGTCGGACGTGCTCA 62.994 66.667 28.75 16.75 44.73 4.26
71 72 4.444024 CATGTTGGCCGTGCGTCG 62.444 66.667 0.00 0.00 39.52 5.12
72 73 4.101790 CCATGTTGGCCGTGCGTC 62.102 66.667 0.00 0.00 0.00 5.19
81 82 4.132441 AATGCGCGGCCATGTTGG 62.132 61.111 8.83 0.00 41.55 3.77
82 83 2.881827 CAATGCGCGGCCATGTTG 60.882 61.111 8.83 0.00 0.00 3.33
83 84 4.799824 GCAATGCGCGGCCATGTT 62.800 61.111 8.83 0.00 0.00 2.71
85 86 4.578898 ATGCAATGCGCGGCCATG 62.579 61.111 8.83 3.47 46.97 3.66
86 87 4.578898 CATGCAATGCGCGGCCAT 62.579 61.111 8.83 0.00 46.97 4.40
90 91 4.918129 GAGCCATGCAATGCGCGG 62.918 66.667 8.83 8.21 44.97 6.46
91 92 3.686843 TTGAGCCATGCAATGCGCG 62.687 57.895 0.00 0.00 44.97 6.86
92 93 1.418342 CTTTGAGCCATGCAATGCGC 61.418 55.000 0.00 0.00 44.97 6.09
93 94 0.171679 TCTTTGAGCCATGCAATGCG 59.828 50.000 0.00 0.00 44.97 4.73
94 95 1.470979 CCTCTTTGAGCCATGCAATGC 60.471 52.381 0.00 0.00 44.97 3.56
95 96 2.097036 TCCTCTTTGAGCCATGCAATG 58.903 47.619 0.00 0.00 46.21 2.82
96 97 2.097825 GTCCTCTTTGAGCCATGCAAT 58.902 47.619 0.00 0.00 0.00 3.56
97 98 1.538047 GTCCTCTTTGAGCCATGCAA 58.462 50.000 0.00 0.00 0.00 4.08
98 99 0.674581 CGTCCTCTTTGAGCCATGCA 60.675 55.000 0.00 0.00 0.00 3.96
99 100 0.674895 ACGTCCTCTTTGAGCCATGC 60.675 55.000 0.00 0.00 0.00 4.06
100 101 2.093973 AGTACGTCCTCTTTGAGCCATG 60.094 50.000 0.00 0.00 0.00 3.66
101 102 2.180276 AGTACGTCCTCTTTGAGCCAT 58.820 47.619 0.00 0.00 0.00 4.40
102 103 1.629043 AGTACGTCCTCTTTGAGCCA 58.371 50.000 0.00 0.00 0.00 4.75
103 104 2.479901 GCTAGTACGTCCTCTTTGAGCC 60.480 54.545 0.00 0.00 0.00 4.70
104 105 2.479901 GGCTAGTACGTCCTCTTTGAGC 60.480 54.545 0.00 0.00 0.00 4.26
105 106 2.753452 TGGCTAGTACGTCCTCTTTGAG 59.247 50.000 0.00 0.00 0.00 3.02
106 107 2.799017 TGGCTAGTACGTCCTCTTTGA 58.201 47.619 0.00 0.00 0.00 2.69
107 108 3.251571 GTTGGCTAGTACGTCCTCTTTG 58.748 50.000 0.00 0.00 0.00 2.77
108 109 2.094854 CGTTGGCTAGTACGTCCTCTTT 60.095 50.000 0.00 0.00 33.33 2.52
109 110 1.471684 CGTTGGCTAGTACGTCCTCTT 59.528 52.381 0.00 0.00 33.33 2.85
110 111 1.093159 CGTTGGCTAGTACGTCCTCT 58.907 55.000 0.00 0.00 33.33 3.69
111 112 3.618774 CGTTGGCTAGTACGTCCTC 57.381 57.895 0.00 0.00 33.33 3.71
117 118 2.098117 ACCATCGTACGTTGGCTAGTAC 59.902 50.000 34.46 7.37 38.25 2.73
118 119 2.368439 ACCATCGTACGTTGGCTAGTA 58.632 47.619 34.46 7.55 38.25 1.82
119 120 1.180029 ACCATCGTACGTTGGCTAGT 58.820 50.000 34.46 19.06 38.25 2.57
120 121 2.288961 AACCATCGTACGTTGGCTAG 57.711 50.000 34.46 18.05 38.25 3.42
121 122 2.339418 CAAACCATCGTACGTTGGCTA 58.661 47.619 34.46 9.70 38.25 3.93
122 123 1.153353 CAAACCATCGTACGTTGGCT 58.847 50.000 34.46 25.09 38.25 4.75
123 124 0.167251 CCAAACCATCGTACGTTGGC 59.833 55.000 34.46 0.00 38.25 4.52
124 125 0.167251 GCCAAACCATCGTACGTTGG 59.833 55.000 33.43 33.43 39.99 3.77
125 126 1.136085 CAGCCAAACCATCGTACGTTG 60.136 52.381 16.05 16.84 0.00 4.10
126 127 1.153353 CAGCCAAACCATCGTACGTT 58.847 50.000 16.05 3.67 0.00 3.99
127 128 1.296056 GCAGCCAAACCATCGTACGT 61.296 55.000 16.05 0.00 0.00 3.57
128 129 1.295357 TGCAGCCAAACCATCGTACG 61.295 55.000 9.53 9.53 0.00 3.67
129 130 0.878416 TTGCAGCCAAACCATCGTAC 59.122 50.000 0.00 0.00 0.00 3.67
130 131 1.164411 CTTGCAGCCAAACCATCGTA 58.836 50.000 0.00 0.00 0.00 3.43
131 132 1.959085 CTTGCAGCCAAACCATCGT 59.041 52.632 0.00 0.00 0.00 3.73
132 133 1.444895 GCTTGCAGCCAAACCATCG 60.445 57.895 0.00 0.00 34.48 3.84
133 134 0.389426 CAGCTTGCAGCCAAACCATC 60.389 55.000 4.77 0.00 43.77 3.51
134 135 1.669440 CAGCTTGCAGCCAAACCAT 59.331 52.632 4.77 0.00 43.77 3.55
135 136 2.500714 CCAGCTTGCAGCCAAACCA 61.501 57.895 4.77 0.00 43.77 3.67
136 137 2.341176 CCAGCTTGCAGCCAAACC 59.659 61.111 4.77 0.00 43.77 3.27
137 138 2.341176 CCCAGCTTGCAGCCAAAC 59.659 61.111 4.77 0.00 43.77 2.93
138 139 3.618750 GCCCAGCTTGCAGCCAAA 61.619 61.111 4.77 0.00 43.77 3.28
143 144 2.044252 ATCAGGCCCAGCTTGCAG 60.044 61.111 0.00 0.00 35.58 4.41
144 145 2.219449 ATCATCAGGCCCAGCTTGCA 62.219 55.000 0.00 0.00 35.58 4.08
145 146 1.041447 AATCATCAGGCCCAGCTTGC 61.041 55.000 0.00 0.00 35.58 4.01
146 147 1.481871 AAATCATCAGGCCCAGCTTG 58.518 50.000 0.00 0.00 36.97 4.01
147 148 3.228453 CATAAATCATCAGGCCCAGCTT 58.772 45.455 0.00 0.00 0.00 3.74
148 149 2.176364 ACATAAATCATCAGGCCCAGCT 59.824 45.455 0.00 0.00 0.00 4.24
149 150 2.590821 ACATAAATCATCAGGCCCAGC 58.409 47.619 0.00 0.00 0.00 4.85
150 151 4.467769 AGAACATAAATCATCAGGCCCAG 58.532 43.478 0.00 0.00 0.00 4.45
151 152 4.524802 AGAACATAAATCATCAGGCCCA 57.475 40.909 0.00 0.00 0.00 5.36
152 153 7.014615 ACAAATAGAACATAAATCATCAGGCCC 59.985 37.037 0.00 0.00 0.00 5.80
153 154 7.864379 CACAAATAGAACATAAATCATCAGGCC 59.136 37.037 0.00 0.00 0.00 5.19
154 155 8.623903 TCACAAATAGAACATAAATCATCAGGC 58.376 33.333 0.00 0.00 0.00 4.85
163 164 9.658475 CACTCGTTTTCACAAATAGAACATAAA 57.342 29.630 0.00 0.00 0.00 1.40
164 165 8.832521 ACACTCGTTTTCACAAATAGAACATAA 58.167 29.630 0.00 0.00 0.00 1.90
165 166 8.373048 ACACTCGTTTTCACAAATAGAACATA 57.627 30.769 0.00 0.00 0.00 2.29
166 167 7.259290 ACACTCGTTTTCACAAATAGAACAT 57.741 32.000 0.00 0.00 0.00 2.71
167 168 6.671614 ACACTCGTTTTCACAAATAGAACA 57.328 33.333 0.00 0.00 0.00 3.18
168 169 7.623770 TGTACACTCGTTTTCACAAATAGAAC 58.376 34.615 0.00 0.00 0.00 3.01
169 170 7.773864 TGTACACTCGTTTTCACAAATAGAA 57.226 32.000 0.00 0.00 0.00 2.10
170 171 7.773864 TTGTACACTCGTTTTCACAAATAGA 57.226 32.000 0.00 0.00 0.00 1.98
171 172 7.906010 TGTTTGTACACTCGTTTTCACAAATAG 59.094 33.333 0.00 0.00 37.95 1.73
172 173 7.749808 TGTTTGTACACTCGTTTTCACAAATA 58.250 30.769 0.00 5.76 37.95 1.40
173 174 6.613233 TGTTTGTACACTCGTTTTCACAAAT 58.387 32.000 0.00 0.00 37.95 2.32
174 175 5.998553 TGTTTGTACACTCGTTTTCACAAA 58.001 33.333 0.00 0.00 34.49 2.83
175 176 5.608676 TGTTTGTACACTCGTTTTCACAA 57.391 34.783 0.00 0.00 0.00 3.33
176 177 5.804692 ATGTTTGTACACTCGTTTTCACA 57.195 34.783 0.00 0.00 37.03 3.58
177 178 7.404203 AGTAATGTTTGTACACTCGTTTTCAC 58.596 34.615 0.00 0.00 37.03 3.18
178 179 7.542534 AGTAATGTTTGTACACTCGTTTTCA 57.457 32.000 0.00 0.00 37.03 2.69
179 180 9.919348 TTAAGTAATGTTTGTACACTCGTTTTC 57.081 29.630 0.00 0.00 37.03 2.29
199 200 9.982291 GTGAAACGAGCATTCATTAATTAAGTA 57.018 29.630 3.94 0.00 38.89 2.24
200 201 7.968405 GGTGAAACGAGCATTCATTAATTAAGT 59.032 33.333 3.94 0.00 38.89 2.24
201 202 7.432252 GGGTGAAACGAGCATTCATTAATTAAG 59.568 37.037 3.94 0.00 38.89 1.85
202 203 7.254852 GGGTGAAACGAGCATTCATTAATTAA 58.745 34.615 0.00 0.00 38.89 1.40
203 204 6.457663 CGGGTGAAACGAGCATTCATTAATTA 60.458 38.462 0.00 0.00 38.89 1.40
204 205 5.650543 GGGTGAAACGAGCATTCATTAATT 58.349 37.500 0.00 0.00 38.89 1.40
205 206 4.201910 CGGGTGAAACGAGCATTCATTAAT 60.202 41.667 0.00 0.00 38.89 1.40
206 207 3.126171 CGGGTGAAACGAGCATTCATTAA 59.874 43.478 0.00 0.00 38.89 1.40
207 208 2.675844 CGGGTGAAACGAGCATTCATTA 59.324 45.455 0.00 0.00 38.89 1.90
208 209 1.468520 CGGGTGAAACGAGCATTCATT 59.531 47.619 0.00 0.00 38.89 2.57
209 210 1.086696 CGGGTGAAACGAGCATTCAT 58.913 50.000 0.00 0.00 38.89 2.57
210 211 1.573829 GCGGGTGAAACGAGCATTCA 61.574 55.000 0.00 0.00 39.24 2.57
211 212 1.134694 GCGGGTGAAACGAGCATTC 59.865 57.895 0.00 0.00 39.24 2.67
212 213 1.599518 TGCGGGTGAAACGAGCATT 60.600 52.632 0.00 0.00 43.11 3.56
213 214 2.031919 TGCGGGTGAAACGAGCAT 59.968 55.556 0.00 0.00 43.11 3.79
660 661 4.610605 TCAAATCTTTCCTGGTCGTACA 57.389 40.909 0.00 0.00 0.00 2.90
787 788 7.350744 TCCAAAACGGCACTAGATATAGTAA 57.649 36.000 0.00 0.00 33.14 2.24
788 789 6.516194 GCTCCAAAACGGCACTAGATATAGTA 60.516 42.308 0.00 0.00 33.14 1.82
789 790 5.739358 GCTCCAAAACGGCACTAGATATAGT 60.739 44.000 0.00 0.00 33.14 2.12
802 811 0.321653 ACTAGCCAGCTCCAAAACGG 60.322 55.000 0.00 0.00 0.00 4.44
855 865 2.546795 CGCAGCATCCTAAAGACTAGGG 60.547 54.545 0.00 0.00 35.45 3.53
856 866 2.362397 TCGCAGCATCCTAAAGACTAGG 59.638 50.000 0.00 0.00 36.06 3.02
1284 1297 1.216977 CGATAACGTCACCTGCCCA 59.783 57.895 0.00 0.00 34.56 5.36
1288 1301 1.520787 GGGGCGATAACGTCACCTG 60.521 63.158 0.00 0.00 46.58 4.00
1289 1302 2.897972 GGGGCGATAACGTCACCT 59.102 61.111 0.00 0.00 46.58 4.00
1411 1424 2.325761 CGCGCTAGCCGATACTTTATT 58.674 47.619 17.40 0.00 41.18 1.40
1426 1439 4.827087 CATGTCCCTCAGCGCGCT 62.827 66.667 31.32 31.32 0.00 5.92
1451 1464 3.148279 CGGACCCCTCCCTCTTCG 61.148 72.222 0.00 0.00 31.93 3.79
1609 1624 3.006859 CACCTCATCAATATACTCGGCCA 59.993 47.826 2.24 0.00 0.00 5.36
1906 1930 1.623542 AAGTATGGGGGAGTGCGTCC 61.624 60.000 0.00 0.00 46.10 4.79
1940 1996 2.766263 TGTAAGTGCCCTAGATGTCAGG 59.234 50.000 0.00 0.00 0.00 3.86
1947 2003 2.211250 AGACGTGTAAGTGCCCTAGA 57.789 50.000 0.00 0.00 0.00 2.43
1957 2013 4.623002 TGCATGAAAGTGTAGACGTGTAA 58.377 39.130 0.00 0.00 0.00 2.41
1958 2014 4.234574 CTGCATGAAAGTGTAGACGTGTA 58.765 43.478 0.00 0.00 34.23 2.90
1959 2015 3.059884 CTGCATGAAAGTGTAGACGTGT 58.940 45.455 0.00 0.00 34.23 4.49
1960 2016 2.413112 CCTGCATGAAAGTGTAGACGTG 59.587 50.000 0.00 0.00 34.23 4.49
1961 2017 2.037251 ACCTGCATGAAAGTGTAGACGT 59.963 45.455 0.00 0.00 34.23 4.34
1962 2018 2.668457 GACCTGCATGAAAGTGTAGACG 59.332 50.000 0.00 0.00 34.23 4.18
1963 2019 2.668457 CGACCTGCATGAAAGTGTAGAC 59.332 50.000 0.00 0.00 34.23 2.59
1964 2020 2.560981 TCGACCTGCATGAAAGTGTAGA 59.439 45.455 0.00 0.00 34.23 2.59
1965 2021 2.959516 TCGACCTGCATGAAAGTGTAG 58.040 47.619 0.00 0.00 0.00 2.74
1966 2022 3.610040 ATCGACCTGCATGAAAGTGTA 57.390 42.857 0.00 0.00 0.00 2.90
1973 2030 2.297315 GACTCCATATCGACCTGCATGA 59.703 50.000 0.00 0.00 0.00 3.07
2110 2167 2.702592 AAAGAGAACGTGTGGGAACA 57.297 45.000 0.00 0.00 38.70 3.18
2116 2173 2.286184 CCCGTCAAAAAGAGAACGTGTG 60.286 50.000 0.00 0.00 0.00 3.82
2117 2174 1.937899 CCCGTCAAAAAGAGAACGTGT 59.062 47.619 0.00 0.00 0.00 4.49
2136 2193 2.746277 AGAACGTGCGGGAATGCC 60.746 61.111 0.00 0.00 0.00 4.40
2137 2194 2.240612 GACAGAACGTGCGGGAATGC 62.241 60.000 0.00 0.00 0.00 3.56
2138 2195 1.635663 GGACAGAACGTGCGGGAATG 61.636 60.000 0.00 0.00 0.00 2.67
2139 2196 1.375523 GGACAGAACGTGCGGGAAT 60.376 57.895 0.00 0.00 0.00 3.01
2140 2197 2.029964 GGACAGAACGTGCGGGAA 59.970 61.111 0.00 0.00 0.00 3.97
2141 2198 3.228017 TGGACAGAACGTGCGGGA 61.228 61.111 0.00 0.00 39.19 5.14
2142 2199 3.041940 GTGGACAGAACGTGCGGG 61.042 66.667 0.00 0.00 39.19 6.13
2143 2200 3.403057 CGTGGACAGAACGTGCGG 61.403 66.667 0.00 0.00 39.19 5.69
2148 2205 1.195448 AGTACGTACGTGGACAGAACG 59.805 52.381 30.25 0.00 46.32 3.95
2149 2206 2.975851 CAAGTACGTACGTGGACAGAAC 59.024 50.000 30.25 17.97 33.06 3.01
2150 2207 2.877786 TCAAGTACGTACGTGGACAGAA 59.122 45.455 31.85 15.48 36.53 3.02
2151 2208 2.224079 GTCAAGTACGTACGTGGACAGA 59.776 50.000 31.85 18.66 36.53 3.41
2152 2209 2.225019 AGTCAAGTACGTACGTGGACAG 59.775 50.000 31.85 16.87 36.53 3.51
2153 2210 2.221169 AGTCAAGTACGTACGTGGACA 58.779 47.619 31.85 16.71 36.53 4.02
2154 2211 2.977405 AGTCAAGTACGTACGTGGAC 57.023 50.000 31.85 28.69 36.53 4.02
2155 2212 2.096268 CGAAGTCAAGTACGTACGTGGA 60.096 50.000 31.85 21.77 36.53 4.02
2156 2213 2.236690 CGAAGTCAAGTACGTACGTGG 58.763 52.381 31.85 20.18 36.53 4.94
2391 2455 7.910683 GTCCAAAAAGTGAAAGAACTTCAGTAG 59.089 37.037 0.00 0.00 45.31 2.57
2399 2463 4.625972 TCGGTCCAAAAAGTGAAAGAAC 57.374 40.909 0.00 0.00 0.00 3.01
2426 2490 3.448686 AGTATTGCGTGAGAAAGATCGG 58.551 45.455 0.00 0.00 27.47 4.18
2513 2582 3.659786 CACCGGACTCACACAAGAATTA 58.340 45.455 9.46 0.00 0.00 1.40
2621 2690 4.742201 GAAGCTGCAGTCGCCGGA 62.742 66.667 16.64 0.00 37.32 5.14
2786 2859 7.793902 AGTAACTCAAATTACTGCAAACGTAG 58.206 34.615 0.00 0.00 42.53 3.51
2823 2896 2.540516 CACGGTCGTTCAACACACATAA 59.459 45.455 0.00 0.00 0.00 1.90
2854 2929 0.328258 CCTACCCAGGAAACCCACTG 59.672 60.000 0.00 0.00 45.91 3.66
2907 2999 7.222611 CCAAATGGTTCGATAATTGAATGGTTC 59.777 37.037 0.00 0.00 0.00 3.62
2908 3000 7.041107 CCAAATGGTTCGATAATTGAATGGTT 58.959 34.615 0.00 0.00 0.00 3.67
2909 3001 6.379703 TCCAAATGGTTCGATAATTGAATGGT 59.620 34.615 0.00 0.00 36.34 3.55
2910 3002 6.804677 TCCAAATGGTTCGATAATTGAATGG 58.195 36.000 0.00 0.00 36.34 3.16
2911 3003 7.706159 TCTCCAAATGGTTCGATAATTGAATG 58.294 34.615 0.00 0.00 36.34 2.67
2912 3004 7.469181 GCTCTCCAAATGGTTCGATAATTGAAT 60.469 37.037 0.00 0.00 36.34 2.57
2913 3005 6.183360 GCTCTCCAAATGGTTCGATAATTGAA 60.183 38.462 0.00 0.00 36.34 2.69
2914 3006 5.296780 GCTCTCCAAATGGTTCGATAATTGA 59.703 40.000 0.00 0.00 36.34 2.57
2915 3007 5.066375 TGCTCTCCAAATGGTTCGATAATTG 59.934 40.000 0.00 0.00 36.34 2.32
2916 3008 5.192927 TGCTCTCCAAATGGTTCGATAATT 58.807 37.500 0.00 0.00 36.34 1.40
2917 3009 4.780815 TGCTCTCCAAATGGTTCGATAAT 58.219 39.130 0.00 0.00 36.34 1.28
2918 3010 4.214986 TGCTCTCCAAATGGTTCGATAA 57.785 40.909 0.00 0.00 36.34 1.75
2919 3011 3.904800 TGCTCTCCAAATGGTTCGATA 57.095 42.857 0.00 0.00 36.34 2.92
2920 3012 2.787473 TGCTCTCCAAATGGTTCGAT 57.213 45.000 0.00 0.00 36.34 3.59
2921 3013 2.632377 GATGCTCTCCAAATGGTTCGA 58.368 47.619 0.00 0.00 36.34 3.71
2922 3014 1.672881 GGATGCTCTCCAAATGGTTCG 59.327 52.381 0.00 0.00 44.26 3.95
2937 3029 0.321919 TGGCAGAGTCTTGTGGATGC 60.322 55.000 0.00 0.00 0.00 3.91
2959 3051 5.221501 GGACATTTGGGGATAACATTGGATG 60.222 44.000 0.00 0.00 0.00 3.51
2960 3052 4.901250 GGACATTTGGGGATAACATTGGAT 59.099 41.667 0.00 0.00 0.00 3.41
2961 3053 4.285863 GGACATTTGGGGATAACATTGGA 58.714 43.478 0.00 0.00 0.00 3.53
2962 3054 3.068024 CGGACATTTGGGGATAACATTGG 59.932 47.826 0.00 0.00 0.00 3.16
2963 3055 3.490761 GCGGACATTTGGGGATAACATTG 60.491 47.826 0.00 0.00 0.00 2.82
2964 3056 2.693074 GCGGACATTTGGGGATAACATT 59.307 45.455 0.00 0.00 0.00 2.71
2965 3057 2.306847 GCGGACATTTGGGGATAACAT 58.693 47.619 0.00 0.00 0.00 2.71
2966 3058 1.757682 GCGGACATTTGGGGATAACA 58.242 50.000 0.00 0.00 0.00 2.41
2967 3059 0.661020 CGCGGACATTTGGGGATAAC 59.339 55.000 0.00 0.00 0.00 1.89
2968 3060 0.542333 TCGCGGACATTTGGGGATAA 59.458 50.000 6.13 0.00 0.00 1.75
2970 3062 1.029947 GTTCGCGGACATTTGGGGAT 61.030 55.000 14.01 0.00 0.00 3.85
2971 3063 1.673009 GTTCGCGGACATTTGGGGA 60.673 57.895 14.01 0.00 0.00 4.81
2974 3084 2.202298 GCGTTCGCGGACATTTGG 60.202 61.111 19.39 1.16 41.67 3.28
3001 3111 2.764314 CCGCTTTGCCGAATCTGGG 61.764 63.158 0.00 0.00 0.00 4.45
3005 3115 1.352056 GCTACCGCTTTGCCGAATC 59.648 57.895 0.00 0.00 0.00 2.52
3049 3160 2.339712 CTTTTGGTTGGCTGGGCG 59.660 61.111 0.00 0.00 0.00 6.13
3144 3255 8.403236 GTTTCCGGTTAATACAATTCTAGCATT 58.597 33.333 0.00 0.00 0.00 3.56
3202 3313 1.903860 AGGTCGGGTTGCTACACATTA 59.096 47.619 0.57 0.00 0.00 1.90
3203 3314 0.690762 AGGTCGGGTTGCTACACATT 59.309 50.000 0.57 0.00 0.00 2.71
3204 3315 0.249398 GAGGTCGGGTTGCTACACAT 59.751 55.000 0.57 0.00 0.00 3.21
3206 3317 0.034337 TTGAGGTCGGGTTGCTACAC 59.966 55.000 0.00 0.00 0.00 2.90
3209 3320 0.320073 CGTTTGAGGTCGGGTTGCTA 60.320 55.000 0.00 0.00 0.00 3.49
3210 3321 1.597027 CGTTTGAGGTCGGGTTGCT 60.597 57.895 0.00 0.00 0.00 3.91
3222 3333 2.821546 CACAGAGACTTGACCGTTTGA 58.178 47.619 0.00 0.00 0.00 2.69
3223 3334 1.261619 GCACAGAGACTTGACCGTTTG 59.738 52.381 0.00 0.00 0.00 2.93
3226 3337 0.753262 AAGCACAGAGACTTGACCGT 59.247 50.000 0.00 0.00 0.00 4.83
3227 3338 2.724977 TAAGCACAGAGACTTGACCG 57.275 50.000 0.00 0.00 0.00 4.79
3229 3340 4.372656 ACACTTAAGCACAGAGACTTGAC 58.627 43.478 1.29 0.00 0.00 3.18
3232 3343 4.672587 TGACACTTAAGCACAGAGACTT 57.327 40.909 1.29 0.00 0.00 3.01
3347 3461 8.916654 CGACCTTGTTATTACTTCTGCTATATG 58.083 37.037 0.00 0.00 0.00 1.78
3355 3469 5.733620 TCCACGACCTTGTTATTACTTCT 57.266 39.130 0.00 0.00 0.00 2.85
3362 3476 2.574369 TGGGAATCCACGACCTTGTTAT 59.426 45.455 0.09 0.00 38.32 1.89
3363 3477 1.979308 TGGGAATCCACGACCTTGTTA 59.021 47.619 0.09 0.00 38.32 2.41
3384 3499 1.135257 CAACTTTGCCGTTGGTGTTGA 60.135 47.619 0.00 0.00 40.35 3.18
3403 3518 6.623549 CGTTAGGGTTACGATTTCTACACTCA 60.624 42.308 0.00 0.00 41.33 3.41
3404 3519 5.741040 CGTTAGGGTTACGATTTCTACACTC 59.259 44.000 0.00 0.00 41.33 3.51
3413 3528 5.841957 AGTGATACGTTAGGGTTACGATT 57.158 39.130 0.00 0.00 41.33 3.34
3415 3530 6.942532 ATAAGTGATACGTTAGGGTTACGA 57.057 37.500 0.00 0.00 41.33 3.43
3416 3531 6.358030 CGAATAAGTGATACGTTAGGGTTACG 59.642 42.308 0.00 0.00 44.20 3.18
3421 3536 4.908156 CGACGAATAAGTGATACGTTAGGG 59.092 45.833 0.00 0.00 37.32 3.53
3427 3542 7.059260 GGAATCTTACGACGAATAAGTGATACG 59.941 40.741 0.00 0.00 32.46 3.06
3438 3553 5.375417 TGTTACAGGAATCTTACGACGAA 57.625 39.130 0.00 0.00 0.00 3.85
3450 3565 3.064207 GCAACGTCTCATGTTACAGGAA 58.936 45.455 0.46 0.00 0.00 3.36
3456 3571 3.057019 GTGACTGCAACGTCTCATGTTA 58.943 45.455 7.52 0.00 35.00 2.41
3474 3589 5.570205 TCCAATGTACTAACCCTTTGTGA 57.430 39.130 0.00 0.00 0.00 3.58
3475 3590 5.710099 ACATCCAATGTACTAACCCTTTGTG 59.290 40.000 0.00 0.00 42.78 3.33
3490 3605 5.104374 GTGAATTTGCCAGTACATCCAATG 58.896 41.667 0.00 0.00 0.00 2.82
3495 3610 5.565592 TGATGTGAATTTGCCAGTACATC 57.434 39.130 0.00 0.00 42.72 3.06
3527 3642 9.166173 TGCATGTAGTGATAGGCATTATTTATC 57.834 33.333 0.00 0.00 27.77 1.75
3530 3645 9.690913 ATATGCATGTAGTGATAGGCATTATTT 57.309 29.630 10.16 0.00 40.73 1.40
3533 3648 8.949177 CAAATATGCATGTAGTGATAGGCATTA 58.051 33.333 10.16 0.00 40.73 1.90
3538 3653 5.942236 AGCCAAATATGCATGTAGTGATAGG 59.058 40.000 10.16 1.13 0.00 2.57
3544 3659 3.561310 CACGAGCCAAATATGCATGTAGT 59.439 43.478 10.16 0.00 0.00 2.73
3548 3663 1.948834 TCCACGAGCCAAATATGCATG 59.051 47.619 10.16 0.00 0.00 4.06
3560 3675 4.048241 ACTATAGAGCTTTTCCACGAGC 57.952 45.455 6.78 0.00 39.17 5.03
3563 3678 9.477484 ACATTATAACTATAGAGCTTTTCCACG 57.523 33.333 6.78 0.00 0.00 4.94
3571 3686 9.542462 TCGCAAAAACATTATAACTATAGAGCT 57.458 29.630 6.78 0.00 0.00 4.09
3577 3692 9.083080 GGCTTTTCGCAAAAACATTATAACTAT 57.917 29.630 0.00 0.00 41.67 2.12
3579 3694 6.926272 TGGCTTTTCGCAAAAACATTATAACT 59.074 30.769 0.00 0.00 41.67 2.24
3580 3695 7.111353 TGGCTTTTCGCAAAAACATTATAAC 57.889 32.000 0.00 0.00 41.67 1.89
3581 3696 7.715265 TTGGCTTTTCGCAAAAACATTATAA 57.285 28.000 0.00 0.00 41.67 0.98
3582 3697 7.897575 ATTGGCTTTTCGCAAAAACATTATA 57.102 28.000 0.00 0.00 41.67 0.98
3584 3699 6.610741 AATTGGCTTTTCGCAAAAACATTA 57.389 29.167 0.00 0.00 41.67 1.90
3585 3700 5.497635 AATTGGCTTTTCGCAAAAACATT 57.502 30.435 0.00 0.00 41.67 2.71
3586 3701 5.497635 AAATTGGCTTTTCGCAAAAACAT 57.502 30.435 0.00 0.00 41.67 2.71
3587 3702 4.954092 AAATTGGCTTTTCGCAAAAACA 57.046 31.818 0.00 0.00 41.67 2.83
3588 3703 5.229052 GGAAAAATTGGCTTTTCGCAAAAAC 59.771 36.000 4.88 0.00 43.35 2.43
3589 3704 5.335935 GGAAAAATTGGCTTTTCGCAAAAA 58.664 33.333 4.88 0.00 43.35 1.94
3596 3711 6.463360 TGATGTAGGGAAAAATTGGCTTTTC 58.537 36.000 2.72 2.72 42.23 2.29
3597 3712 6.432403 TGATGTAGGGAAAAATTGGCTTTT 57.568 33.333 0.00 0.00 38.73 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.