Multiple sequence alignment - TraesCS1B01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G224600 chr1B 100.000 4789 0 0 1 4789 403102292 403097504 0.000000e+00 8844.0
1 TraesCS1B01G224600 chr1B 98.425 127 2 0 1998 2124 19018466 19018592 1.730000e-54 224.0
2 TraesCS1B01G224600 chr1D 94.744 2169 74 20 2122 4284 298950043 298947909 0.000000e+00 3338.0
3 TraesCS1B01G224600 chr1D 93.309 1091 46 10 906 1994 298951100 298950035 0.000000e+00 1585.0
4 TraesCS1B01G224600 chr1D 95.405 457 17 3 4333 4789 298947917 298947465 0.000000e+00 725.0
5 TraesCS1B01G224600 chr1D 96.629 89 3 0 3977 4065 202569004 202569092 1.070000e-31 148.0
6 TraesCS1B01G224600 chr1D 94.681 94 4 1 3976 4068 121236932 121236839 1.390000e-30 145.0
7 TraesCS1B01G224600 chr1A 93.962 1325 51 10 2122 3446 372944120 372942825 0.000000e+00 1977.0
8 TraesCS1B01G224600 chr1A 93.617 893 33 9 841 1732 372945279 372944410 0.000000e+00 1312.0
9 TraesCS1B01G224600 chr1A 94.139 836 27 7 3461 4284 372942843 372942018 0.000000e+00 1253.0
10 TraesCS1B01G224600 chr1A 86.873 518 47 9 327 844 372945877 372945381 1.160000e-155 560.0
11 TraesCS1B01G224600 chr1A 93.487 261 11 6 1736 1994 372944368 372944112 2.700000e-102 383.0
12 TraesCS1B01G224600 chr1A 88.929 280 30 1 31 310 372975332 372975054 1.280000e-90 344.0
13 TraesCS1B01G224600 chr1A 88.889 288 11 4 4299 4586 372942031 372941765 7.680000e-88 335.0
14 TraesCS1B01G224600 chr1A 90.306 196 10 2 4597 4789 372921231 372921042 1.030000e-61 248.0
15 TraesCS1B01G224600 chr1A 97.692 130 3 0 1998 2127 82526056 82525927 1.730000e-54 224.0
16 TraesCS1B01G224600 chr1A 97.692 130 3 0 1998 2127 109578602 109578731 1.730000e-54 224.0
17 TraesCS1B01G224600 chr1A 97.692 130 3 0 1998 2127 515551468 515551339 1.730000e-54 224.0
18 TraesCS1B01G224600 chr4B 97.692 130 3 0 1998 2127 648316370 648316499 1.730000e-54 224.0
19 TraesCS1B01G224600 chr4B 95.604 91 2 2 3980 4069 654048433 654048522 1.390000e-30 145.0
20 TraesCS1B01G224600 chr4A 97.692 130 3 0 1998 2127 657204689 657204818 1.730000e-54 224.0
21 TraesCS1B01G224600 chr3D 97.692 130 3 0 1998 2127 153512396 153512267 1.730000e-54 224.0
22 TraesCS1B01G224600 chr2D 97.692 130 3 0 1998 2127 442882406 442882535 1.730000e-54 224.0
23 TraesCS1B01G224600 chr2D 97.692 130 3 0 1998 2127 480396358 480396229 1.730000e-54 224.0
24 TraesCS1B01G224600 chr4D 95.604 91 2 2 3974 4064 6267064 6267152 1.390000e-30 145.0
25 TraesCS1B01G224600 chr2A 96.591 88 2 1 3982 4068 42482204 42482117 1.390000e-30 145.0
26 TraesCS1B01G224600 chr6B 93.000 100 3 4 3970 4068 35636351 35636255 5.000000e-30 143.0
27 TraesCS1B01G224600 chr6A 92.308 104 1 6 3977 4079 21072226 21072323 1.800000e-29 141.0
28 TraesCS1B01G224600 chr7A 90.909 66 5 1 1818 1882 85603258 85603193 2.370000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G224600 chr1B 403097504 403102292 4788 True 8844.000000 8844 100.000000 1 4789 1 chr1B.!!$R1 4788
1 TraesCS1B01G224600 chr1D 298947465 298951100 3635 True 1882.666667 3338 94.486000 906 4789 3 chr1D.!!$R2 3883
2 TraesCS1B01G224600 chr1A 372941765 372945877 4112 True 970.000000 1977 91.827833 327 4586 6 chr1A.!!$R5 4259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 635 0.100325 TGTGCAAAACAGTCTTGCCG 59.900 50.0 9.16 0.0 46.98 5.69 F
2021 2167 0.097674 GTGCATGTAGCTTCCGCTTG 59.902 55.0 0.00 0.0 46.47 4.01 F
2118 2264 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2245 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53 R
3722 3872 0.032540 CATCATCCCACTCATCGCGA 59.967 55.000 13.09 13.09 0.00 5.87 R
3990 4149 3.134127 GATTCCCGGCTGGTGCAC 61.134 66.667 11.58 8.80 41.91 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.526218 TTCGAGAATACATCTATCAAATCAGC 57.474 34.615 0.00 0.00 38.96 4.26
72 73 7.890515 TCGAGAATACATCTATCAAATCAGCT 58.109 34.615 0.00 0.00 38.96 4.24
73 74 9.014297 TCGAGAATACATCTATCAAATCAGCTA 57.986 33.333 0.00 0.00 38.96 3.32
74 75 9.631452 CGAGAATACATCTATCAAATCAGCTAA 57.369 33.333 0.00 0.00 38.96 3.09
110 111 7.976135 ATTCTCCATTCATATCCTTTCTTCG 57.024 36.000 0.00 0.00 0.00 3.79
111 112 6.731292 TCTCCATTCATATCCTTTCTTCGA 57.269 37.500 0.00 0.00 0.00 3.71
112 113 7.308450 TCTCCATTCATATCCTTTCTTCGAT 57.692 36.000 0.00 0.00 0.00 3.59
113 114 7.157347 TCTCCATTCATATCCTTTCTTCGATG 58.843 38.462 0.00 0.00 0.00 3.84
114 115 5.702670 TCCATTCATATCCTTTCTTCGATGC 59.297 40.000 0.00 0.00 0.00 3.91
115 116 5.704515 CCATTCATATCCTTTCTTCGATGCT 59.295 40.000 0.00 0.00 0.00 3.79
116 117 6.206243 CCATTCATATCCTTTCTTCGATGCTT 59.794 38.462 0.00 0.00 0.00 3.91
117 118 6.851222 TTCATATCCTTTCTTCGATGCTTC 57.149 37.500 0.00 0.00 0.00 3.86
118 119 6.166984 TCATATCCTTTCTTCGATGCTTCT 57.833 37.500 0.00 0.00 0.00 2.85
119 120 7.290110 TCATATCCTTTCTTCGATGCTTCTA 57.710 36.000 0.00 0.00 0.00 2.10
120 121 7.374272 TCATATCCTTTCTTCGATGCTTCTAG 58.626 38.462 0.00 0.00 0.00 2.43
121 122 5.860941 ATCCTTTCTTCGATGCTTCTAGA 57.139 39.130 0.00 0.00 0.00 2.43
122 123 5.255710 TCCTTTCTTCGATGCTTCTAGAG 57.744 43.478 0.00 0.00 0.00 2.43
139 140 3.063915 AGCTCAGACTGCTCTTCCA 57.936 52.632 0.00 0.00 35.67 3.53
140 141 0.896923 AGCTCAGACTGCTCTTCCAG 59.103 55.000 0.00 0.00 35.67 3.86
141 142 0.894141 GCTCAGACTGCTCTTCCAGA 59.106 55.000 0.00 0.00 36.67 3.86
142 143 1.274728 GCTCAGACTGCTCTTCCAGAA 59.725 52.381 0.00 0.00 36.67 3.02
143 144 2.930455 GCTCAGACTGCTCTTCCAGAAC 60.930 54.545 0.00 0.00 36.67 3.01
144 145 2.298446 CTCAGACTGCTCTTCCAGAACA 59.702 50.000 0.00 0.00 36.67 3.18
145 146 2.902486 TCAGACTGCTCTTCCAGAACAT 59.098 45.455 0.00 0.00 36.67 2.71
146 147 4.089361 TCAGACTGCTCTTCCAGAACATA 58.911 43.478 0.00 0.00 36.67 2.29
147 148 4.081972 TCAGACTGCTCTTCCAGAACATAC 60.082 45.833 0.00 0.00 36.67 2.39
148 149 3.834813 AGACTGCTCTTCCAGAACATACA 59.165 43.478 0.00 0.00 36.67 2.29
149 150 4.469227 AGACTGCTCTTCCAGAACATACAT 59.531 41.667 0.00 0.00 36.67 2.29
150 151 4.511527 ACTGCTCTTCCAGAACATACATG 58.488 43.478 0.00 0.00 36.67 3.21
151 152 3.875727 CTGCTCTTCCAGAACATACATGG 59.124 47.826 0.00 0.00 34.77 3.66
152 153 3.519107 TGCTCTTCCAGAACATACATGGA 59.481 43.478 0.00 0.00 41.33 3.41
153 154 4.125703 GCTCTTCCAGAACATACATGGAG 58.874 47.826 0.00 0.00 43.71 3.86
154 155 4.383552 GCTCTTCCAGAACATACATGGAGT 60.384 45.833 0.00 0.00 43.71 3.85
155 156 5.738909 CTCTTCCAGAACATACATGGAGTT 58.261 41.667 0.00 0.00 43.71 3.01
156 157 6.630413 GCTCTTCCAGAACATACATGGAGTTA 60.630 42.308 0.00 0.00 43.71 2.24
157 158 7.437713 TCTTCCAGAACATACATGGAGTTAT 57.562 36.000 0.00 0.00 43.71 1.89
158 159 7.275183 TCTTCCAGAACATACATGGAGTTATG 58.725 38.462 12.13 12.13 43.71 1.90
159 160 5.368145 TCCAGAACATACATGGAGTTATGC 58.632 41.667 13.11 0.00 38.19 3.14
160 161 4.516698 CCAGAACATACATGGAGTTATGCC 59.483 45.833 13.11 2.83 36.09 4.40
161 162 5.125356 CAGAACATACATGGAGTTATGCCA 58.875 41.667 0.00 0.00 40.24 4.92
162 163 5.237996 CAGAACATACATGGAGTTATGCCAG 59.762 44.000 0.00 0.00 39.11 4.85
163 164 4.090761 ACATACATGGAGTTATGCCAGG 57.909 45.455 0.00 0.00 42.56 4.45
164 165 3.716353 ACATACATGGAGTTATGCCAGGA 59.284 43.478 0.00 0.00 39.44 3.86
165 166 4.202398 ACATACATGGAGTTATGCCAGGAG 60.202 45.833 0.00 0.00 39.44 3.69
166 167 1.492176 ACATGGAGTTATGCCAGGAGG 59.508 52.381 0.00 0.00 39.44 4.30
167 168 1.770658 CATGGAGTTATGCCAGGAGGA 59.229 52.381 0.00 0.00 39.44 3.71
168 169 1.204146 TGGAGTTATGCCAGGAGGAC 58.796 55.000 0.00 0.00 36.89 3.85
169 170 1.273838 TGGAGTTATGCCAGGAGGACT 60.274 52.381 0.00 0.00 36.89 3.85
170 171 1.840635 GGAGTTATGCCAGGAGGACTT 59.159 52.381 0.00 0.00 36.89 3.01
171 172 2.420687 GGAGTTATGCCAGGAGGACTTG 60.421 54.545 0.00 0.00 36.89 3.16
172 173 2.237392 GAGTTATGCCAGGAGGACTTGT 59.763 50.000 0.00 0.00 36.89 3.16
173 174 2.237392 AGTTATGCCAGGAGGACTTGTC 59.763 50.000 0.00 0.00 36.89 3.18
174 175 0.824109 TATGCCAGGAGGACTTGTCG 59.176 55.000 0.00 0.00 36.89 4.35
175 176 0.904865 ATGCCAGGAGGACTTGTCGA 60.905 55.000 0.00 0.00 36.89 4.20
176 177 1.216710 GCCAGGAGGACTTGTCGAG 59.783 63.158 0.00 0.00 36.89 4.04
177 178 1.251527 GCCAGGAGGACTTGTCGAGA 61.252 60.000 0.00 0.00 36.89 4.04
178 179 1.479709 CCAGGAGGACTTGTCGAGAT 58.520 55.000 0.00 0.00 36.89 2.75
179 180 1.407258 CCAGGAGGACTTGTCGAGATC 59.593 57.143 0.00 0.00 36.89 2.75
180 181 1.407258 CAGGAGGACTTGTCGAGATCC 59.593 57.143 0.00 0.00 0.00 3.36
181 182 1.006043 AGGAGGACTTGTCGAGATCCA 59.994 52.381 5.13 0.00 33.33 3.41
182 183 2.035632 GGAGGACTTGTCGAGATCCAT 58.964 52.381 5.13 0.00 33.33 3.41
183 184 2.223923 GGAGGACTTGTCGAGATCCATG 60.224 54.545 5.13 0.00 33.33 3.66
184 185 1.759445 AGGACTTGTCGAGATCCATGG 59.241 52.381 4.97 4.97 33.33 3.66
185 186 1.576356 GACTTGTCGAGATCCATGGC 58.424 55.000 6.96 0.00 0.00 4.40
186 187 0.179100 ACTTGTCGAGATCCATGGCG 60.179 55.000 6.96 4.85 0.00 5.69
187 188 1.493950 CTTGTCGAGATCCATGGCGC 61.494 60.000 6.96 0.00 0.00 6.53
188 189 2.663188 GTCGAGATCCATGGCGCC 60.663 66.667 22.73 22.73 0.00 6.53
189 190 2.839632 TCGAGATCCATGGCGCCT 60.840 61.111 29.70 10.60 0.00 5.52
190 191 2.664185 CGAGATCCATGGCGCCTG 60.664 66.667 29.70 21.88 0.00 4.85
191 192 2.976903 GAGATCCATGGCGCCTGC 60.977 66.667 29.70 10.15 41.71 4.85
192 193 3.472943 GAGATCCATGGCGCCTGCT 62.473 63.158 29.70 14.86 42.25 4.24
193 194 3.285215 GATCCATGGCGCCTGCTG 61.285 66.667 29.70 20.97 42.25 4.41
194 195 4.889112 ATCCATGGCGCCTGCTGG 62.889 66.667 29.70 28.24 42.25 4.85
204 205 3.587095 CCTGCTGGCTGTGTGATG 58.413 61.111 0.00 0.00 0.00 3.07
205 206 2.044555 CCTGCTGGCTGTGTGATGG 61.045 63.158 0.00 0.00 0.00 3.51
206 207 2.674033 TGCTGGCTGTGTGATGGC 60.674 61.111 0.00 0.00 0.00 4.40
207 208 3.446570 GCTGGCTGTGTGATGGCC 61.447 66.667 0.00 0.00 45.45 5.36
208 209 2.353958 CTGGCTGTGTGATGGCCT 59.646 61.111 3.32 0.00 45.45 5.19
209 210 1.748122 CTGGCTGTGTGATGGCCTC 60.748 63.158 3.32 0.00 45.45 4.70
210 211 2.821366 GGCTGTGTGATGGCCTCG 60.821 66.667 3.32 0.00 42.31 4.63
211 212 2.265739 GCTGTGTGATGGCCTCGA 59.734 61.111 3.32 0.00 0.00 4.04
212 213 1.812922 GCTGTGTGATGGCCTCGAG 60.813 63.158 5.13 5.13 0.00 4.04
213 214 1.893062 CTGTGTGATGGCCTCGAGA 59.107 57.895 15.71 0.00 0.00 4.04
214 215 0.463204 CTGTGTGATGGCCTCGAGAT 59.537 55.000 15.71 0.00 0.00 2.75
215 216 0.176449 TGTGTGATGGCCTCGAGATG 59.824 55.000 15.71 0.00 0.00 2.90
216 217 1.144716 TGTGATGGCCTCGAGATGC 59.855 57.895 15.71 9.76 0.00 3.91
217 218 1.144716 GTGATGGCCTCGAGATGCA 59.855 57.895 15.71 1.64 0.00 3.96
218 219 0.462581 GTGATGGCCTCGAGATGCAA 60.463 55.000 15.71 3.18 0.00 4.08
219 220 0.462581 TGATGGCCTCGAGATGCAAC 60.463 55.000 15.71 5.66 0.00 4.17
220 221 0.462581 GATGGCCTCGAGATGCAACA 60.463 55.000 15.71 4.61 0.00 3.33
221 222 0.463295 ATGGCCTCGAGATGCAACAG 60.463 55.000 15.71 0.00 0.00 3.16
222 223 2.467826 GGCCTCGAGATGCAACAGC 61.468 63.158 15.71 5.70 0.00 4.40
223 224 1.449246 GCCTCGAGATGCAACAGCT 60.449 57.895 15.71 0.00 30.65 4.24
224 225 1.703438 GCCTCGAGATGCAACAGCTG 61.703 60.000 15.71 13.48 26.98 4.24
225 226 0.390866 CCTCGAGATGCAACAGCTGT 60.391 55.000 15.25 15.25 26.98 4.40
226 227 0.720027 CTCGAGATGCAACAGCTGTG 59.280 55.000 22.49 15.42 26.98 3.66
227 228 0.671472 TCGAGATGCAACAGCTGTGG 60.671 55.000 22.49 19.87 26.98 4.17
228 229 1.642037 CGAGATGCAACAGCTGTGGG 61.642 60.000 22.49 16.95 26.98 4.61
229 230 0.321919 GAGATGCAACAGCTGTGGGA 60.322 55.000 22.49 20.48 26.98 4.37
230 231 0.322277 AGATGCAACAGCTGTGGGAG 60.322 55.000 22.49 12.01 0.00 4.30
231 232 0.321919 GATGCAACAGCTGTGGGAGA 60.322 55.000 22.49 6.75 0.00 3.71
232 233 0.322277 ATGCAACAGCTGTGGGAGAG 60.322 55.000 22.49 7.64 0.00 3.20
233 234 2.331132 GCAACAGCTGTGGGAGAGC 61.331 63.158 22.49 13.68 36.65 4.09
235 236 0.673022 CAACAGCTGTGGGAGAGCTC 60.673 60.000 22.49 5.27 45.24 4.09
236 237 0.835543 AACAGCTGTGGGAGAGCTCT 60.836 55.000 22.49 18.28 45.24 4.09
237 238 1.218585 CAGCTGTGGGAGAGCTCTG 59.781 63.158 23.91 6.54 45.24 3.35
238 239 1.988956 AGCTGTGGGAGAGCTCTGG 60.989 63.158 23.91 5.12 43.54 3.86
239 240 3.028921 GCTGTGGGAGAGCTCTGGG 62.029 68.421 23.91 5.48 33.37 4.45
240 241 2.284921 TGTGGGAGAGCTCTGGGG 60.285 66.667 23.91 0.00 0.00 4.96
241 242 3.086600 GTGGGAGAGCTCTGGGGG 61.087 72.222 23.91 0.00 0.00 5.40
245 246 3.791586 GAGAGCTCTGGGGGCCAC 61.792 72.222 23.91 0.17 0.00 5.01
246 247 4.664267 AGAGCTCTGGGGGCCACA 62.664 66.667 17.42 8.91 0.00 4.17
247 248 3.650950 GAGCTCTGGGGGCCACAA 61.651 66.667 11.07 0.00 0.00 3.33
248 249 3.635268 GAGCTCTGGGGGCCACAAG 62.635 68.421 11.07 4.56 0.00 3.16
249 250 4.748144 GCTCTGGGGGCCACAAGG 62.748 72.222 10.34 6.61 38.23 3.61
263 264 2.034221 AAGGCGCCTTGGGAGAAC 59.966 61.111 39.85 2.34 34.60 3.01
264 265 2.529744 AAGGCGCCTTGGGAGAACT 61.530 57.895 39.85 13.86 34.60 3.01
265 266 2.436824 GGCGCCTTGGGAGAACTC 60.437 66.667 22.15 0.00 0.00 3.01
274 275 3.965660 GGAGAACTCCGGCCCATA 58.034 61.111 5.06 0.00 40.36 2.74
275 276 2.453242 GGAGAACTCCGGCCCATAT 58.547 57.895 5.06 0.00 40.36 1.78
276 277 0.321996 GGAGAACTCCGGCCCATATC 59.678 60.000 5.06 0.00 40.36 1.63
277 278 0.321996 GAGAACTCCGGCCCATATCC 59.678 60.000 0.00 0.00 0.00 2.59
278 279 1.004918 GAACTCCGGCCCATATCCG 60.005 63.158 0.00 0.00 46.05 4.18
292 293 3.004090 TCCGATGGGACTCGAGGA 58.996 61.111 18.41 0.00 41.12 3.71
293 294 1.537172 TCCGATGGGACTCGAGGAT 59.463 57.895 18.41 2.76 41.12 3.24
294 295 0.823769 TCCGATGGGACTCGAGGATG 60.824 60.000 18.41 0.00 41.12 3.51
295 296 0.823769 CCGATGGGACTCGAGGATGA 60.824 60.000 18.41 0.00 41.12 2.92
296 297 0.595588 CGATGGGACTCGAGGATGAG 59.404 60.000 18.41 0.00 41.12 2.90
297 298 0.316841 GATGGGACTCGAGGATGAGC 59.683 60.000 18.41 0.00 39.68 4.26
298 299 0.105760 ATGGGACTCGAGGATGAGCT 60.106 55.000 18.41 0.00 39.68 4.09
299 300 0.753479 TGGGACTCGAGGATGAGCTC 60.753 60.000 18.41 6.82 39.68 4.09
300 301 0.753479 GGGACTCGAGGATGAGCTCA 60.753 60.000 20.79 20.79 39.68 4.26
301 302 1.327303 GGACTCGAGGATGAGCTCAT 58.673 55.000 29.09 29.09 39.68 2.90
309 310 2.537600 GATGAGCTCATCCCACCCT 58.462 57.895 36.62 13.33 45.24 4.34
310 311 0.396060 GATGAGCTCATCCCACCCTC 59.604 60.000 36.62 17.78 45.24 4.30
311 312 1.059006 ATGAGCTCATCCCACCCTCC 61.059 60.000 23.75 0.00 28.78 4.30
312 313 2.367512 AGCTCATCCCACCCTCCC 60.368 66.667 0.00 0.00 0.00 4.30
313 314 2.367512 GCTCATCCCACCCTCCCT 60.368 66.667 0.00 0.00 0.00 4.20
314 315 2.447714 GCTCATCCCACCCTCCCTC 61.448 68.421 0.00 0.00 0.00 4.30
315 316 1.768077 CTCATCCCACCCTCCCTCC 60.768 68.421 0.00 0.00 0.00 4.30
316 317 2.774351 CATCCCACCCTCCCTCCC 60.774 72.222 0.00 0.00 0.00 4.30
317 318 4.124126 ATCCCACCCTCCCTCCCC 62.124 72.222 0.00 0.00 0.00 4.81
339 340 1.938577 CAAGACATGGATGAGCTTCGG 59.061 52.381 0.00 0.00 0.00 4.30
340 341 0.179062 AGACATGGATGAGCTTCGGC 60.179 55.000 0.00 0.00 42.17 5.54
341 342 1.153086 ACATGGATGAGCTTCGGCC 60.153 57.895 0.00 0.00 43.01 6.13
342 343 2.109799 ATGGATGAGCTTCGGCCG 59.890 61.111 22.12 22.12 43.01 6.13
343 344 4.838152 TGGATGAGCTTCGGCCGC 62.838 66.667 23.51 6.64 43.01 6.53
356 357 4.736165 GCCGCAAAGCCATATTGG 57.264 55.556 0.00 0.00 41.55 3.16
366 367 1.559682 AGCCATATTGGTCTCGTGGTT 59.440 47.619 0.00 0.00 40.46 3.67
372 373 7.461947 CCATATTGGTCTCGTGGTTCGATCT 62.462 48.000 0.00 0.00 39.25 2.75
384 385 1.064357 GTTCGATCTGGAGGACTCGTC 59.936 57.143 0.00 0.00 33.10 4.20
385 386 0.252197 TCGATCTGGAGGACTCGTCA 59.748 55.000 1.35 0.00 33.10 4.35
387 388 1.265635 CGATCTGGAGGACTCGTCATC 59.734 57.143 3.30 3.30 39.45 2.92
403 404 3.276409 ATCAACGAACGTGCACGCG 62.276 57.895 37.35 32.72 44.43 6.01
423 424 3.129871 CGATGCTCCATTTTCTCTCTCC 58.870 50.000 0.00 0.00 0.00 3.71
424 425 3.431346 CGATGCTCCATTTTCTCTCTCCA 60.431 47.826 0.00 0.00 0.00 3.86
433 434 6.883217 TCCATTTTCTCTCTCCATCTTTTCTG 59.117 38.462 0.00 0.00 0.00 3.02
457 458 3.879892 GGAGGACCACAAAATATCTGCTC 59.120 47.826 0.00 0.00 35.97 4.26
469 470 2.194388 ATCTGCTCAGGCACCCACAG 62.194 60.000 0.00 0.00 44.28 3.66
476 477 1.228367 AGGCACCCACAGCTTTCAG 60.228 57.895 0.00 0.00 0.00 3.02
486 487 3.748568 CCACAGCTTTCAGAAGAAGTACC 59.251 47.826 0.00 0.00 34.71 3.34
491 492 4.595350 AGCTTTCAGAAGAAGTACCTCCTT 59.405 41.667 0.00 0.00 34.71 3.36
514 515 2.747855 AGGCACCTGCTTTAGCGC 60.748 61.111 0.00 0.00 45.83 5.92
538 539 1.483415 GGTGGCATCCGAACCTAACTA 59.517 52.381 0.00 0.00 0.00 2.24
539 540 2.483188 GGTGGCATCCGAACCTAACTAG 60.483 54.545 0.00 0.00 0.00 2.57
543 544 2.626743 GCATCCGAACCTAACTAGCCTA 59.373 50.000 0.00 0.00 0.00 3.93
546 547 2.092968 TCCGAACCTAACTAGCCTACGA 60.093 50.000 0.00 0.00 0.00 3.43
548 549 2.290093 CGAACCTAACTAGCCTACGAGG 59.710 54.545 0.00 0.00 38.80 4.63
567 568 2.676471 ATCACGTTTGGGGCTGCC 60.676 61.111 11.05 11.05 0.00 4.85
572 573 3.989787 GTTTGGGGCTGCCCGTTG 61.990 66.667 30.32 0.00 46.66 4.10
584 585 2.825836 CCGTTGGCCATGCTCTCC 60.826 66.667 6.09 0.00 0.00 3.71
588 589 1.924939 TTGGCCATGCTCTCCAGGA 60.925 57.895 6.09 0.00 0.00 3.86
634 635 0.100325 TGTGCAAAACAGTCTTGCCG 59.900 50.000 9.16 0.00 46.98 5.69
690 691 5.705609 TTATTCTGGTGACAAAAAGCTCC 57.294 39.130 0.00 0.00 42.06 4.70
693 694 2.439507 TCTGGTGACAAAAAGCTCCTCT 59.560 45.455 0.00 0.00 42.06 3.69
735 736 4.201970 CCTTTTCAGTTTTTCACCGTAGCA 60.202 41.667 0.00 0.00 0.00 3.49
741 742 3.059188 AGTTTTTCACCGTAGCATGTTCG 60.059 43.478 0.00 0.00 0.00 3.95
759 760 4.996122 TGTTCGGTAAATACAACATTCCGT 59.004 37.500 0.00 0.00 38.04 4.69
770 771 5.862924 ACAACATTCCGTAACATCTGAAG 57.137 39.130 0.00 0.00 0.00 3.02
795 796 4.843728 TGAATATTCGAGGGAGTTTTGCT 58.156 39.130 10.80 0.00 0.00 3.91
804 805 1.341209 GGGAGTTTTGCTTCCAACTGG 59.659 52.381 0.00 0.00 42.76 4.00
830 831 0.677098 AGAGCAGAGCACATGCCTTG 60.677 55.000 0.00 0.65 44.97 3.61
831 832 0.959372 GAGCAGAGCACATGCCTTGT 60.959 55.000 0.00 0.00 44.97 3.16
839 840 3.600388 AGCACATGCCTTGTACTTCTAC 58.400 45.455 0.00 0.00 43.38 2.59
845 951 6.818644 CACATGCCTTGTACTTCTACAGTATT 59.181 38.462 0.00 0.00 40.29 1.89
866 972 8.624776 AGTATTTTCAGAAGAACAAAGTTCAGG 58.375 33.333 11.92 0.00 32.39 3.86
869 975 6.683974 TTCAGAAGAACAAAGTTCAGGAAG 57.316 37.500 11.92 0.00 0.00 3.46
915 1021 4.764172 CATTTGATTCCCTCTCGAACTCT 58.236 43.478 0.00 0.00 0.00 3.24
970 1076 1.586564 CGTAGAAGAGCCCGCTTCG 60.587 63.158 6.20 0.00 46.81 3.79
971 1077 1.227002 GTAGAAGAGCCCGCTTCGG 60.227 63.158 6.20 0.00 46.81 4.30
1045 1151 4.394712 CACACGGCTCCTGGACCC 62.395 72.222 0.00 0.00 0.00 4.46
1109 1215 3.710722 CTCCCAGCTCCGCAACCT 61.711 66.667 0.00 0.00 0.00 3.50
1110 1216 3.672295 CTCCCAGCTCCGCAACCTC 62.672 68.421 0.00 0.00 0.00 3.85
1111 1217 3.710722 CCCAGCTCCGCAACCTCT 61.711 66.667 0.00 0.00 0.00 3.69
1129 1235 2.147433 CTTTTGCTCCCTCCTGCCCT 62.147 60.000 0.00 0.00 0.00 5.19
1344 1450 0.612174 ACTCCAGCCTCTACGCTTCA 60.612 55.000 0.00 0.00 36.82 3.02
1495 1601 1.632948 GCAGCGGTTCGACCTTTACC 61.633 60.000 0.00 0.00 35.66 2.85
1524 1630 0.765510 GGTTCCAGACAGAGGTGGTT 59.234 55.000 0.00 0.00 35.14 3.67
1603 1709 3.151022 GGGAGCAGGACGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
1611 1717 1.405821 CAGGACGAGGAGGTGTATGAC 59.594 57.143 0.00 0.00 0.00 3.06
1687 1793 2.540101 GGTAATGATTCTCCGCTCAACG 59.460 50.000 0.00 0.00 43.15 4.10
1707 1813 2.723010 CGAACTCGCAATTGAGCAGAAC 60.723 50.000 10.34 5.17 39.68 3.01
1711 1817 3.231965 CTCGCAATTGAGCAGAACAAAG 58.768 45.455 10.34 0.00 0.00 2.77
1712 1818 2.877786 TCGCAATTGAGCAGAACAAAGA 59.122 40.909 10.34 0.00 0.00 2.52
1713 1819 3.314913 TCGCAATTGAGCAGAACAAAGAA 59.685 39.130 10.34 0.00 0.00 2.52
1714 1820 3.423206 CGCAATTGAGCAGAACAAAGAAC 59.577 43.478 10.34 0.00 0.00 3.01
1715 1821 4.362279 GCAATTGAGCAGAACAAAGAACA 58.638 39.130 10.34 0.00 0.00 3.18
1716 1822 4.805192 GCAATTGAGCAGAACAAAGAACAA 59.195 37.500 10.34 0.00 0.00 2.83
1717 1823 5.051240 GCAATTGAGCAGAACAAAGAACAAG 60.051 40.000 10.34 0.00 0.00 3.16
1764 1908 4.667668 GCTCAGCACACAGTAAAAATCGAG 60.668 45.833 0.00 0.00 0.00 4.04
1772 1916 9.000018 GCACACAGTAAAAATCGAGAAATAATC 58.000 33.333 0.00 0.00 0.00 1.75
1865 2009 7.494952 TGCAAATTTTCATGAAGAAATGACACA 59.505 29.630 8.41 2.21 45.15 3.72
1911 2055 2.568623 AACTGATTTCGAGCAGGGTT 57.431 45.000 14.02 3.94 36.47 4.11
1955 2100 3.099141 TCTGCATGTGGTACAGATCTCA 58.901 45.455 0.00 0.00 41.77 3.27
1998 2144 1.227793 GGATACTCTGCCTGCCTGC 60.228 63.158 0.00 0.00 0.00 4.85
1999 2145 1.227793 GATACTCTGCCTGCCTGCC 60.228 63.158 0.00 0.00 0.00 4.85
2000 2146 1.692042 ATACTCTGCCTGCCTGCCT 60.692 57.895 0.00 0.00 0.00 4.75
2001 2147 1.980784 ATACTCTGCCTGCCTGCCTG 61.981 60.000 0.00 0.00 0.00 4.85
2002 2148 4.798344 CTCTGCCTGCCTGCCTGG 62.798 72.222 0.00 0.00 39.35 4.45
2014 2160 4.326255 GCCTGGTGCATGTAGCTT 57.674 55.556 14.15 0.00 45.94 3.74
2015 2161 2.101700 GCCTGGTGCATGTAGCTTC 58.898 57.895 14.15 0.00 45.94 3.86
2016 2162 1.379642 GCCTGGTGCATGTAGCTTCC 61.380 60.000 14.15 0.00 45.94 3.46
2017 2163 1.091771 CCTGGTGCATGTAGCTTCCG 61.092 60.000 14.15 0.85 45.94 4.30
2018 2164 1.709147 CTGGTGCATGTAGCTTCCGC 61.709 60.000 14.15 0.00 45.94 5.54
2020 2166 1.026718 GGTGCATGTAGCTTCCGCTT 61.027 55.000 5.68 0.00 46.47 4.68
2021 2167 0.097674 GTGCATGTAGCTTCCGCTTG 59.902 55.000 0.00 0.00 46.47 4.01
2022 2168 1.063166 GCATGTAGCTTCCGCTTGC 59.937 57.895 0.00 0.00 46.47 4.01
2023 2169 1.349627 CATGTAGCTTCCGCTTGCG 59.650 57.895 8.14 8.14 46.47 4.85
2024 2170 2.464459 ATGTAGCTTCCGCTTGCGC 61.464 57.895 9.71 0.00 46.47 6.09
2025 2171 3.118454 GTAGCTTCCGCTTGCGCA 61.118 61.111 5.66 5.66 46.47 6.09
2026 2172 2.815211 TAGCTTCCGCTTGCGCAG 60.815 61.111 11.31 6.32 46.47 5.18
2042 2188 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2049 2195 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2050 2196 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2051 2197 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2052 2198 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2053 2199 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2054 2200 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2055 2201 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2056 2202 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2066 2212 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2067 2213 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2068 2214 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2069 2215 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2070 2216 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2071 2217 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2072 2218 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2073 2219 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2074 2220 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2075 2221 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2076 2222 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2077 2223 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2078 2224 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2079 2225 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2080 2226 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2081 2227 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2082 2228 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2083 2229 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2084 2230 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2085 2231 1.818674 CGCAGCCTTTCCCTACATTTT 59.181 47.619 0.00 0.00 0.00 1.82
2086 2232 2.231235 CGCAGCCTTTCCCTACATTTTT 59.769 45.455 0.00 0.00 0.00 1.94
2087 2233 3.588955 GCAGCCTTTCCCTACATTTTTG 58.411 45.455 0.00 0.00 0.00 2.44
2088 2234 3.006859 GCAGCCTTTCCCTACATTTTTGT 59.993 43.478 0.00 0.00 0.00 2.83
2089 2235 4.219725 GCAGCCTTTCCCTACATTTTTGTA 59.780 41.667 0.00 0.00 0.00 2.41
2090 2236 5.279256 GCAGCCTTTCCCTACATTTTTGTAA 60.279 40.000 0.00 0.00 0.00 2.41
2091 2237 6.389906 CAGCCTTTCCCTACATTTTTGTAAG 58.610 40.000 0.00 0.00 0.00 2.34
2092 2238 6.208599 CAGCCTTTCCCTACATTTTTGTAAGA 59.791 38.462 0.00 0.00 0.00 2.10
2093 2239 6.434340 AGCCTTTCCCTACATTTTTGTAAGAG 59.566 38.462 0.00 0.00 0.00 2.85
2094 2240 6.350194 GCCTTTCCCTACATTTTTGTAAGAGG 60.350 42.308 0.00 0.00 0.00 3.69
2095 2241 6.350194 CCTTTCCCTACATTTTTGTAAGAGGC 60.350 42.308 0.00 0.00 0.00 4.70
2096 2242 5.514500 TCCCTACATTTTTGTAAGAGGCT 57.486 39.130 0.00 0.00 0.00 4.58
2097 2243 5.253330 TCCCTACATTTTTGTAAGAGGCTG 58.747 41.667 0.00 0.00 0.00 4.85
2098 2244 5.010282 CCCTACATTTTTGTAAGAGGCTGT 58.990 41.667 0.00 0.00 0.00 4.40
2099 2245 5.476945 CCCTACATTTTTGTAAGAGGCTGTT 59.523 40.000 1.39 1.39 0.00 3.16
2100 2246 6.015434 CCCTACATTTTTGTAAGAGGCTGTTT 60.015 38.462 0.90 0.00 0.00 2.83
2101 2247 7.084486 CCTACATTTTTGTAAGAGGCTGTTTC 58.916 38.462 0.90 0.00 0.00 2.78
2102 2248 5.842907 ACATTTTTGTAAGAGGCTGTTTCC 58.157 37.500 0.90 0.00 0.00 3.13
2103 2249 5.362430 ACATTTTTGTAAGAGGCTGTTTCCA 59.638 36.000 0.90 0.00 0.00 3.53
2104 2250 5.514274 TTTTTGTAAGAGGCTGTTTCCAG 57.486 39.130 0.90 0.00 41.91 3.86
2105 2251 2.859165 TGTAAGAGGCTGTTTCCAGG 57.141 50.000 0.90 0.00 39.22 4.45
2106 2252 2.334977 TGTAAGAGGCTGTTTCCAGGA 58.665 47.619 0.90 0.00 39.22 3.86
2107 2253 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2108 2254 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2109 2255 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2110 2256 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2111 2257 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2112 2258 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2113 2259 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2114 2260 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2115 2261 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2116 2262 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2117 2263 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2118 2264 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2119 2265 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2120 2266 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2121 2267 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2122 2268 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2123 2269 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2124 2270 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2153 2299 2.930682 GGTACAAATCTCGAGCAGAACC 59.069 50.000 7.81 6.65 33.62 3.62
2185 2331 6.072175 GCATCCTACGATCTAGAGACAAGAAT 60.072 42.308 0.00 0.00 0.00 2.40
2308 2456 3.477090 CAGTGTTTCGTTACAAACTTGCG 59.523 43.478 10.13 0.00 37.20 4.85
2486 2634 5.500234 TGACTATGATTTCTTCCCCACTTG 58.500 41.667 0.00 0.00 0.00 3.16
2596 2744 2.684881 GACATTTCGAGGGACATTGCAT 59.315 45.455 0.00 0.00 0.00 3.96
2632 2780 4.532126 AGGTCCATATTGCCGATAGATCAA 59.468 41.667 0.00 0.00 39.76 2.57
2633 2781 4.631813 GGTCCATATTGCCGATAGATCAAC 59.368 45.833 0.00 0.00 39.76 3.18
2685 2835 0.944386 ACGACAACATGTGGCTTCAC 59.056 50.000 0.00 0.00 41.56 3.18
2698 2848 4.018870 TGTGGCTTCACTCCATGGTAAATA 60.019 41.667 12.58 0.00 41.73 1.40
2730 2880 3.308402 CCTGGTGAGTTGAATATGGTGGT 60.308 47.826 0.00 0.00 0.00 4.16
2757 2907 1.676006 CGTTAAAGGGGCTGCCATTAG 59.324 52.381 22.05 2.61 0.00 1.73
2758 2908 2.735151 GTTAAAGGGGCTGCCATTAGT 58.265 47.619 22.05 3.70 0.00 2.24
2759 2909 3.683281 CGTTAAAGGGGCTGCCATTAGTA 60.683 47.826 22.05 2.68 0.00 1.82
2760 2910 2.437085 AAAGGGGCTGCCATTAGTAC 57.563 50.000 22.05 0.11 0.00 2.73
2761 2911 1.596496 AAGGGGCTGCCATTAGTACT 58.404 50.000 22.05 0.00 0.00 2.73
2762 2912 2.489528 AGGGGCTGCCATTAGTACTA 57.510 50.000 22.05 0.00 0.00 1.82
2763 2913 2.047830 AGGGGCTGCCATTAGTACTAC 58.952 52.381 22.05 0.00 0.00 2.73
2764 2914 1.766496 GGGGCTGCCATTAGTACTACA 59.234 52.381 22.05 0.00 0.00 2.74
2765 2915 2.372172 GGGGCTGCCATTAGTACTACAT 59.628 50.000 22.05 0.00 0.00 2.29
2766 2916 3.581332 GGGGCTGCCATTAGTACTACATA 59.419 47.826 22.05 0.00 0.00 2.29
2767 2917 4.225267 GGGGCTGCCATTAGTACTACATAT 59.775 45.833 22.05 0.00 0.00 1.78
2768 2918 5.280521 GGGGCTGCCATTAGTACTACATATT 60.281 44.000 22.05 0.00 0.00 1.28
2769 2919 6.070424 GGGGCTGCCATTAGTACTACATATTA 60.070 42.308 22.05 0.00 0.00 0.98
2770 2920 6.817140 GGGCTGCCATTAGTACTACATATTAC 59.183 42.308 22.05 0.00 0.00 1.89
2771 2921 7.383687 GGCTGCCATTAGTACTACATATTACA 58.616 38.462 15.17 0.00 0.00 2.41
2772 2922 7.876068 GGCTGCCATTAGTACTACATATTACAA 59.124 37.037 15.17 0.00 0.00 2.41
2773 2923 9.268268 GCTGCCATTAGTACTACATATTACAAA 57.732 33.333 0.91 0.00 0.00 2.83
2775 2925 9.268268 TGCCATTAGTACTACATATTACAAAGC 57.732 33.333 0.91 0.00 0.00 3.51
2776 2926 9.268268 GCCATTAGTACTACATATTACAAAGCA 57.732 33.333 0.91 0.00 0.00 3.91
2848 2998 1.577328 GATGGCACTGTGGTGTTCCG 61.577 60.000 10.21 0.00 44.65 4.30
2849 2999 2.050836 ATGGCACTGTGGTGTTCCGA 62.051 55.000 10.21 0.00 44.65 4.55
2915 3065 5.114780 GGGTATAGTCATGCAGCATATCTG 58.885 45.833 7.82 0.00 45.62 2.90
2930 3080 8.133627 GCAGCATATCTGAAACATATTTCTTGT 58.866 33.333 0.00 0.00 45.72 3.16
2941 3091 7.833285 AACATATTTCTTGTACAAACCACCT 57.167 32.000 10.03 0.00 0.00 4.00
2947 3097 6.385649 TTCTTGTACAAACCACCTGATTTC 57.614 37.500 10.03 0.00 0.00 2.17
2953 3103 1.722011 AACCACCTGATTTCGCTACG 58.278 50.000 0.00 0.00 0.00 3.51
2982 3132 4.263462 TGAAGCTAATCATGTGTTCCCTGT 60.263 41.667 0.00 0.00 0.00 4.00
2983 3133 3.614092 AGCTAATCATGTGTTCCCTGTG 58.386 45.455 0.00 0.00 0.00 3.66
3093 3243 8.641541 CCATTATACAAGCATGTTTTCCCTATT 58.358 33.333 0.00 0.00 41.05 1.73
3108 3258 2.239654 CCCTATTGAAGTGGCTCCTGAA 59.760 50.000 0.00 0.00 0.00 3.02
3138 3288 4.415783 GGATTGCCGTGGAAGGTT 57.584 55.556 0.00 0.00 0.00 3.50
3149 3299 3.818773 CCGTGGAAGGTTAATTTGTGTCT 59.181 43.478 0.00 0.00 0.00 3.41
3163 3313 7.935338 AATTTGTGTCTAAATTTCTGCTGTG 57.065 32.000 0.00 0.00 37.02 3.66
3215 3365 5.065346 GCAATGCTCTAGGACCTAAAACTTC 59.935 44.000 2.08 0.00 0.00 3.01
3477 3627 5.362717 TCGAAATCATGTTAAGGGAGCTAGA 59.637 40.000 0.00 0.00 0.00 2.43
3504 3654 4.864704 AAGCTTTTCTTGGCGGAAAATA 57.135 36.364 15.09 0.02 42.07 1.40
3618 3768 6.066054 TGATTTGTTTGCAGTTCGAATACA 57.934 33.333 0.00 0.00 0.00 2.29
3623 3773 5.448438 TGTTTGCAGTTCGAATACAATGAC 58.552 37.500 0.00 3.83 0.00 3.06
3722 3872 1.269831 GCTGCTCGTCCGGAAAGATAT 60.270 52.381 17.21 0.00 0.00 1.63
3852 4010 3.621268 GCGGTGATAGTCATTGCAGTAAA 59.379 43.478 0.00 0.00 32.12 2.01
3908 4066 2.004733 GCAAGCTCAAAATTGGGATGC 58.995 47.619 8.00 8.00 36.40 3.91
3980 4139 9.947189 ATTCCATATTATCATCCAAGGCAATAT 57.053 29.630 0.00 0.00 0.00 1.28
4065 4224 0.035458 ACTAGACCACTGGTGCTTGC 59.965 55.000 5.10 0.00 36.51 4.01
4068 4227 1.526917 GACCACTGGTGCTTGCTGT 60.527 57.895 5.10 0.00 35.25 4.40
4071 4230 1.361271 CACTGGTGCTTGCTGTTGG 59.639 57.895 0.00 0.00 0.00 3.77
4074 4233 0.031178 CTGGTGCTTGCTGTTGGAAC 59.969 55.000 0.00 0.00 0.00 3.62
4085 4244 4.076394 TGCTGTTGGAACTAACCATTACC 58.924 43.478 0.00 0.00 39.82 2.85
4144 4305 6.546772 GCTTATTCTCCTACTAGTACCACTGT 59.453 42.308 0.00 0.00 0.00 3.55
4177 4338 1.559682 GACCATTGAAGCCTCCCTACA 59.440 52.381 0.00 0.00 0.00 2.74
4244 4405 5.757808 TGGCGATTTTTCGATGAGATTGATA 59.242 36.000 0.00 0.00 34.64 2.15
4284 4445 8.102047 AGGATAATCAACATCTCATCTTCATCC 58.898 37.037 0.00 0.00 0.00 3.51
4286 4447 9.153721 GATAATCAACATCTCATCTTCATCCTC 57.846 37.037 0.00 0.00 0.00 3.71
4289 4450 2.697229 ACATCTCATCTTCATCCTCGCA 59.303 45.455 0.00 0.00 0.00 5.10
4290 4451 3.133542 ACATCTCATCTTCATCCTCGCAA 59.866 43.478 0.00 0.00 0.00 4.85
4291 4452 3.893326 TCTCATCTTCATCCTCGCAAA 57.107 42.857 0.00 0.00 0.00 3.68
4292 4453 4.206477 TCTCATCTTCATCCTCGCAAAA 57.794 40.909 0.00 0.00 0.00 2.44
4293 4454 4.578871 TCTCATCTTCATCCTCGCAAAAA 58.421 39.130 0.00 0.00 0.00 1.94
4518 4679 6.252036 GCTTTACGCTCATTTTCAATCATG 57.748 37.500 0.00 0.00 35.14 3.07
4519 4680 6.029607 GCTTTACGCTCATTTTCAATCATGA 58.970 36.000 0.00 0.00 35.14 3.07
4520 4681 6.694411 GCTTTACGCTCATTTTCAATCATGAT 59.306 34.615 1.18 1.18 33.43 2.45
4577 4738 8.131731 GTGATGCTTAGGAGAATTGGATAAAAC 58.868 37.037 0.00 0.00 0.00 2.43
4652 4813 4.816126 TGTAGGAGTACATATGCTTCCCT 58.184 43.478 14.02 12.38 34.02 4.20
4657 4818 4.999950 GGAGTACATATGCTTCCCTGATTG 59.000 45.833 1.58 0.00 0.00 2.67
4663 4824 5.359009 ACATATGCTTCCCTGATTGAAGTTG 59.641 40.000 1.58 0.00 41.03 3.16
4672 4833 6.409704 TCCCTGATTGAAGTTGATTGTCTAG 58.590 40.000 0.00 0.00 0.00 2.43
4688 4849 6.474140 TTGTCTAGGTTCTGTTGTCTACAA 57.526 37.500 0.00 0.00 36.02 2.41
4719 4880 0.782384 AAGCGCTCGTACGACAAAAG 59.218 50.000 15.28 5.42 34.06 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.149225 GCTGATTTGATAGATGTATTCTCGAAT 57.851 33.333 0.00 0.00 35.79 3.34
46 47 8.363390 AGCTGATTTGATAGATGTATTCTCGAA 58.637 33.333 0.00 0.00 35.79 3.71
47 48 7.890515 AGCTGATTTGATAGATGTATTCTCGA 58.109 34.615 0.00 0.00 35.79 4.04
48 49 9.631452 TTAGCTGATTTGATAGATGTATTCTCG 57.369 33.333 0.00 0.00 35.79 4.04
84 85 8.844244 CGAAGAAAGGATATGAATGGAGAATTT 58.156 33.333 0.00 0.00 0.00 1.82
85 86 8.213679 TCGAAGAAAGGATATGAATGGAGAATT 58.786 33.333 0.00 0.00 0.00 2.17
86 87 7.739825 TCGAAGAAAGGATATGAATGGAGAAT 58.260 34.615 0.00 0.00 0.00 2.40
87 88 7.124573 TCGAAGAAAGGATATGAATGGAGAA 57.875 36.000 0.00 0.00 0.00 2.87
88 89 6.731292 TCGAAGAAAGGATATGAATGGAGA 57.269 37.500 0.00 0.00 0.00 3.71
89 90 6.128336 GCATCGAAGAAAGGATATGAATGGAG 60.128 42.308 0.00 0.00 43.58 3.86
90 91 5.702670 GCATCGAAGAAAGGATATGAATGGA 59.297 40.000 0.00 0.00 43.58 3.41
91 92 5.704515 AGCATCGAAGAAAGGATATGAATGG 59.295 40.000 0.00 0.00 43.58 3.16
92 93 6.798315 AGCATCGAAGAAAGGATATGAATG 57.202 37.500 0.00 0.00 43.58 2.67
93 94 7.222872 AGAAGCATCGAAGAAAGGATATGAAT 58.777 34.615 0.00 0.00 43.58 2.57
94 95 6.586344 AGAAGCATCGAAGAAAGGATATGAA 58.414 36.000 0.00 0.00 43.58 2.57
95 96 6.166984 AGAAGCATCGAAGAAAGGATATGA 57.833 37.500 0.00 0.00 43.58 2.15
96 97 7.374272 TCTAGAAGCATCGAAGAAAGGATATG 58.626 38.462 0.00 0.00 43.58 1.78
97 98 7.531857 TCTAGAAGCATCGAAGAAAGGATAT 57.468 36.000 0.00 0.00 43.58 1.63
98 99 6.961360 TCTAGAAGCATCGAAGAAAGGATA 57.039 37.500 0.00 0.00 43.58 2.59
99 100 5.841810 CTCTAGAAGCATCGAAGAAAGGAT 58.158 41.667 0.00 0.00 43.58 3.24
100 101 5.255710 CTCTAGAAGCATCGAAGAAAGGA 57.744 43.478 0.00 0.00 43.58 3.36
121 122 0.896923 CTGGAAGAGCAGTCTGAGCT 59.103 55.000 3.32 0.00 46.82 4.09
122 123 0.894141 TCTGGAAGAGCAGTCTGAGC 59.106 55.000 3.32 0.00 38.67 4.26
133 134 5.762179 AACTCCATGTATGTTCTGGAAGA 57.238 39.130 0.00 0.00 44.68 2.87
134 135 6.017605 GCATAACTCCATGTATGTTCTGGAAG 60.018 42.308 0.00 0.00 38.55 3.46
135 136 5.822519 GCATAACTCCATGTATGTTCTGGAA 59.177 40.000 0.00 0.00 38.55 3.53
136 137 5.368145 GCATAACTCCATGTATGTTCTGGA 58.632 41.667 0.00 0.00 37.50 3.86
137 138 4.516698 GGCATAACTCCATGTATGTTCTGG 59.483 45.833 0.00 0.00 0.00 3.86
138 139 5.125356 TGGCATAACTCCATGTATGTTCTG 58.875 41.667 0.00 0.00 0.00 3.02
139 140 5.371526 CTGGCATAACTCCATGTATGTTCT 58.628 41.667 0.00 0.00 32.37 3.01
140 141 4.516698 CCTGGCATAACTCCATGTATGTTC 59.483 45.833 0.00 0.00 32.37 3.18
141 142 4.165950 TCCTGGCATAACTCCATGTATGTT 59.834 41.667 0.00 0.00 32.37 2.71
142 143 3.716353 TCCTGGCATAACTCCATGTATGT 59.284 43.478 0.00 0.00 32.37 2.29
143 144 4.321718 CTCCTGGCATAACTCCATGTATG 58.678 47.826 0.00 0.00 32.37 2.39
144 145 3.328931 CCTCCTGGCATAACTCCATGTAT 59.671 47.826 0.00 0.00 32.37 2.29
145 146 2.705658 CCTCCTGGCATAACTCCATGTA 59.294 50.000 0.00 0.00 32.37 2.29
146 147 1.492176 CCTCCTGGCATAACTCCATGT 59.508 52.381 0.00 0.00 32.37 3.21
147 148 1.770658 TCCTCCTGGCATAACTCCATG 59.229 52.381 0.00 0.00 32.37 3.66
148 149 1.771255 GTCCTCCTGGCATAACTCCAT 59.229 52.381 0.00 0.00 32.37 3.41
149 150 1.204146 GTCCTCCTGGCATAACTCCA 58.796 55.000 0.00 0.00 0.00 3.86
150 151 1.501582 AGTCCTCCTGGCATAACTCC 58.498 55.000 0.00 0.00 0.00 3.85
151 152 2.237392 ACAAGTCCTCCTGGCATAACTC 59.763 50.000 0.00 0.00 0.00 3.01
152 153 2.237392 GACAAGTCCTCCTGGCATAACT 59.763 50.000 0.00 0.00 0.00 2.24
153 154 2.633488 GACAAGTCCTCCTGGCATAAC 58.367 52.381 0.00 0.00 0.00 1.89
154 155 1.207089 CGACAAGTCCTCCTGGCATAA 59.793 52.381 0.00 0.00 0.00 1.90
155 156 0.824109 CGACAAGTCCTCCTGGCATA 59.176 55.000 0.00 0.00 0.00 3.14
156 157 0.904865 TCGACAAGTCCTCCTGGCAT 60.905 55.000 0.00 0.00 0.00 4.40
157 158 1.533033 TCGACAAGTCCTCCTGGCA 60.533 57.895 0.00 0.00 0.00 4.92
158 159 1.216710 CTCGACAAGTCCTCCTGGC 59.783 63.158 0.00 0.00 0.00 4.85
159 160 1.407258 GATCTCGACAAGTCCTCCTGG 59.593 57.143 0.00 0.00 0.00 4.45
160 161 1.407258 GGATCTCGACAAGTCCTCCTG 59.593 57.143 0.00 0.00 0.00 3.86
161 162 1.006043 TGGATCTCGACAAGTCCTCCT 59.994 52.381 0.00 0.00 0.00 3.69
162 163 1.475403 TGGATCTCGACAAGTCCTCC 58.525 55.000 0.00 0.00 0.00 4.30
163 164 2.223923 CCATGGATCTCGACAAGTCCTC 60.224 54.545 5.56 0.00 0.00 3.71
164 165 1.759445 CCATGGATCTCGACAAGTCCT 59.241 52.381 5.56 0.00 0.00 3.85
165 166 1.808133 GCCATGGATCTCGACAAGTCC 60.808 57.143 18.40 0.00 0.00 3.85
166 167 1.576356 GCCATGGATCTCGACAAGTC 58.424 55.000 18.40 0.00 0.00 3.01
167 168 0.179100 CGCCATGGATCTCGACAAGT 60.179 55.000 18.40 0.00 0.00 3.16
168 169 1.493950 GCGCCATGGATCTCGACAAG 61.494 60.000 18.40 0.00 0.00 3.16
169 170 1.521457 GCGCCATGGATCTCGACAA 60.521 57.895 18.40 0.00 0.00 3.18
170 171 2.106938 GCGCCATGGATCTCGACA 59.893 61.111 18.40 0.00 0.00 4.35
171 172 2.663188 GGCGCCATGGATCTCGAC 60.663 66.667 24.80 7.92 0.00 4.20
172 173 2.839632 AGGCGCCATGGATCTCGA 60.840 61.111 31.54 0.00 0.00 4.04
173 174 2.664185 CAGGCGCCATGGATCTCG 60.664 66.667 31.54 10.78 0.00 4.04
174 175 2.976903 GCAGGCGCCATGGATCTC 60.977 66.667 31.54 6.92 0.00 2.75
175 176 3.486685 AGCAGGCGCCATGGATCT 61.487 61.111 31.54 12.49 39.83 2.75
176 177 3.285215 CAGCAGGCGCCATGGATC 61.285 66.667 31.54 10.26 39.83 3.36
177 178 4.889112 CCAGCAGGCGCCATGGAT 62.889 66.667 31.01 17.05 35.89 3.41
187 188 2.044555 CCATCACACAGCCAGCAGG 61.045 63.158 0.00 0.00 38.23 4.85
188 189 2.697761 GCCATCACACAGCCAGCAG 61.698 63.158 0.00 0.00 0.00 4.24
189 190 2.674033 GCCATCACACAGCCAGCA 60.674 61.111 0.00 0.00 0.00 4.41
190 191 3.446570 GGCCATCACACAGCCAGC 61.447 66.667 0.00 0.00 46.34 4.85
194 195 1.812922 CTCGAGGCCATCACACAGC 60.813 63.158 5.01 0.00 0.00 4.40
195 196 0.463204 ATCTCGAGGCCATCACACAG 59.537 55.000 13.56 0.00 0.00 3.66
196 197 0.176449 CATCTCGAGGCCATCACACA 59.824 55.000 13.56 0.00 0.00 3.72
197 198 1.156645 GCATCTCGAGGCCATCACAC 61.157 60.000 13.56 0.00 30.94 3.82
198 199 1.144716 GCATCTCGAGGCCATCACA 59.855 57.895 13.56 0.00 30.94 3.58
199 200 0.462581 TTGCATCTCGAGGCCATCAC 60.463 55.000 13.56 0.00 37.30 3.06
200 201 0.462581 GTTGCATCTCGAGGCCATCA 60.463 55.000 13.56 1.33 37.30 3.07
201 202 0.462581 TGTTGCATCTCGAGGCCATC 60.463 55.000 13.56 7.19 37.30 3.51
202 203 0.463295 CTGTTGCATCTCGAGGCCAT 60.463 55.000 13.56 0.00 37.30 4.40
203 204 1.078918 CTGTTGCATCTCGAGGCCA 60.079 57.895 13.56 4.56 37.30 5.36
204 205 2.467826 GCTGTTGCATCTCGAGGCC 61.468 63.158 13.56 0.00 37.30 5.19
205 206 1.449246 AGCTGTTGCATCTCGAGGC 60.449 57.895 13.56 9.74 42.74 4.70
206 207 0.390866 ACAGCTGTTGCATCTCGAGG 60.391 55.000 15.25 0.00 42.74 4.63
207 208 0.720027 CACAGCTGTTGCATCTCGAG 59.280 55.000 18.94 5.93 42.74 4.04
208 209 0.671472 CCACAGCTGTTGCATCTCGA 60.671 55.000 18.94 0.00 42.74 4.04
209 210 1.642037 CCCACAGCTGTTGCATCTCG 61.642 60.000 18.94 2.78 42.74 4.04
210 211 0.321919 TCCCACAGCTGTTGCATCTC 60.322 55.000 18.94 0.00 42.74 2.75
211 212 0.322277 CTCCCACAGCTGTTGCATCT 60.322 55.000 18.94 0.00 42.74 2.90
212 213 0.321919 TCTCCCACAGCTGTTGCATC 60.322 55.000 18.94 0.00 42.74 3.91
213 214 0.322277 CTCTCCCACAGCTGTTGCAT 60.322 55.000 18.94 0.00 42.74 3.96
214 215 1.071987 CTCTCCCACAGCTGTTGCA 59.928 57.895 18.94 0.00 42.74 4.08
215 216 2.331132 GCTCTCCCACAGCTGTTGC 61.331 63.158 18.94 10.85 40.05 4.17
216 217 1.374190 AGCTCTCCCACAGCTGTTG 59.626 57.895 18.94 14.51 45.85 3.33
217 218 3.897856 AGCTCTCCCACAGCTGTT 58.102 55.556 18.94 0.00 45.85 3.16
221 222 2.583520 CCAGAGCTCTCCCACAGC 59.416 66.667 14.96 0.00 37.12 4.40
222 223 2.365586 CCCCAGAGCTCTCCCACAG 61.366 68.421 14.96 0.78 0.00 3.66
223 224 2.284921 CCCCAGAGCTCTCCCACA 60.285 66.667 14.96 0.00 0.00 4.17
224 225 3.086600 CCCCCAGAGCTCTCCCAC 61.087 72.222 14.96 0.00 0.00 4.61
228 229 3.791586 GTGGCCCCCAGAGCTCTC 61.792 72.222 14.96 1.46 32.34 3.20
229 230 4.664267 TGTGGCCCCCAGAGCTCT 62.664 66.667 11.45 11.45 32.34 4.09
230 231 3.635268 CTTGTGGCCCCCAGAGCTC 62.635 68.421 5.27 5.27 32.34 4.09
231 232 3.655211 CTTGTGGCCCCCAGAGCT 61.655 66.667 0.00 0.00 32.34 4.09
232 233 4.748144 CCTTGTGGCCCCCAGAGC 62.748 72.222 0.00 0.00 32.34 4.09
246 247 2.034221 GTTCTCCCAAGGCGCCTT 59.966 61.111 35.84 35.84 36.60 4.35
247 248 2.930562 AGTTCTCCCAAGGCGCCT 60.931 61.111 27.08 27.08 0.00 5.52
248 249 2.436824 GAGTTCTCCCAAGGCGCC 60.437 66.667 21.89 21.89 0.00 6.53
249 250 2.436824 GGAGTTCTCCCAAGGCGC 60.437 66.667 0.00 0.00 0.00 6.53
250 251 2.125512 CGGAGTTCTCCCAAGGCG 60.126 66.667 12.54 0.00 0.00 5.52
251 252 2.269241 CCGGAGTTCTCCCAAGGC 59.731 66.667 12.54 0.00 0.00 4.35
252 253 2.269241 GCCGGAGTTCTCCCAAGG 59.731 66.667 5.05 9.43 0.00 3.61
253 254 2.269241 GGCCGGAGTTCTCCCAAG 59.731 66.667 5.05 4.08 0.00 3.61
254 255 3.327404 GGGCCGGAGTTCTCCCAA 61.327 66.667 5.05 0.00 38.62 4.12
255 256 4.649705 TGGGCCGGAGTTCTCCCA 62.650 66.667 5.05 8.74 45.87 4.37
256 257 1.128188 ATATGGGCCGGAGTTCTCCC 61.128 60.000 5.05 5.43 39.22 4.30
257 258 0.321996 GATATGGGCCGGAGTTCTCC 59.678 60.000 5.05 8.66 0.00 3.71
258 259 0.321996 GGATATGGGCCGGAGTTCTC 59.678 60.000 5.05 0.00 0.00 2.87
259 260 1.472662 CGGATATGGGCCGGAGTTCT 61.473 60.000 5.05 0.00 44.87 3.01
260 261 1.004918 CGGATATGGGCCGGAGTTC 60.005 63.158 5.05 0.00 44.87 3.01
261 262 3.148084 CGGATATGGGCCGGAGTT 58.852 61.111 5.05 0.00 44.87 3.01
270 271 1.474478 CTCGAGTCCCATCGGATATGG 59.526 57.143 3.62 0.00 41.40 2.74
271 272 1.474478 CCTCGAGTCCCATCGGATATG 59.526 57.143 12.31 0.00 41.40 1.78
272 273 1.354705 TCCTCGAGTCCCATCGGATAT 59.645 52.381 12.31 0.00 41.40 1.63
273 274 0.769247 TCCTCGAGTCCCATCGGATA 59.231 55.000 12.31 0.00 41.40 2.59
274 275 0.113385 ATCCTCGAGTCCCATCGGAT 59.887 55.000 12.31 2.03 41.40 4.18
275 276 0.823769 CATCCTCGAGTCCCATCGGA 60.824 60.000 12.31 0.00 42.93 4.55
276 277 0.823769 TCATCCTCGAGTCCCATCGG 60.824 60.000 12.31 0.00 42.93 4.18
277 278 0.595588 CTCATCCTCGAGTCCCATCG 59.404 60.000 12.31 0.00 44.07 3.84
278 279 0.316841 GCTCATCCTCGAGTCCCATC 59.683 60.000 12.31 0.00 35.33 3.51
279 280 0.105760 AGCTCATCCTCGAGTCCCAT 60.106 55.000 12.31 0.00 35.33 4.00
280 281 0.753479 GAGCTCATCCTCGAGTCCCA 60.753 60.000 12.31 0.00 35.33 4.37
281 282 0.753479 TGAGCTCATCCTCGAGTCCC 60.753 60.000 13.74 0.00 35.33 4.46
282 283 1.269448 GATGAGCTCATCCTCGAGTCC 59.731 57.143 36.62 16.11 45.24 3.85
283 284 2.704725 GATGAGCTCATCCTCGAGTC 57.295 55.000 36.62 17.78 45.24 3.36
292 293 1.059006 GGAGGGTGGGATGAGCTCAT 61.059 60.000 29.09 29.09 39.70 2.90
293 294 1.690633 GGAGGGTGGGATGAGCTCA 60.691 63.158 20.79 20.79 0.00 4.26
294 295 2.447714 GGGAGGGTGGGATGAGCTC 61.448 68.421 6.82 6.82 0.00 4.09
295 296 2.367512 GGGAGGGTGGGATGAGCT 60.368 66.667 0.00 0.00 0.00 4.09
296 297 2.367512 AGGGAGGGTGGGATGAGC 60.368 66.667 0.00 0.00 0.00 4.26
297 298 1.768077 GGAGGGAGGGTGGGATGAG 60.768 68.421 0.00 0.00 0.00 2.90
298 299 2.372688 GGAGGGAGGGTGGGATGA 59.627 66.667 0.00 0.00 0.00 2.92
299 300 2.774351 GGGAGGGAGGGTGGGATG 60.774 72.222 0.00 0.00 0.00 3.51
300 301 4.124126 GGGGAGGGAGGGTGGGAT 62.124 72.222 0.00 0.00 0.00 3.85
315 316 0.466922 GCTCATCCATGTCTTGGGGG 60.467 60.000 4.99 0.00 46.45 5.40
316 317 0.549950 AGCTCATCCATGTCTTGGGG 59.450 55.000 4.99 0.00 46.45 4.96
317 318 2.295885 GAAGCTCATCCATGTCTTGGG 58.704 52.381 4.99 0.00 46.45 4.12
319 320 1.938577 CCGAAGCTCATCCATGTCTTG 59.061 52.381 0.00 0.00 0.00 3.02
320 321 1.745141 GCCGAAGCTCATCCATGTCTT 60.745 52.381 0.00 0.00 35.50 3.01
321 322 0.179062 GCCGAAGCTCATCCATGTCT 60.179 55.000 0.00 0.00 35.50 3.41
322 323 1.162800 GGCCGAAGCTCATCCATGTC 61.163 60.000 0.00 0.00 39.73 3.06
323 324 1.153086 GGCCGAAGCTCATCCATGT 60.153 57.895 0.00 0.00 39.73 3.21
324 325 2.249535 CGGCCGAAGCTCATCCATG 61.250 63.158 24.07 0.00 39.73 3.66
325 326 2.109799 CGGCCGAAGCTCATCCAT 59.890 61.111 24.07 0.00 39.73 3.41
326 327 4.838152 GCGGCCGAAGCTCATCCA 62.838 66.667 33.48 0.00 39.73 3.41
327 328 4.838152 TGCGGCCGAAGCTCATCC 62.838 66.667 33.48 8.18 39.73 3.51
328 329 2.315038 CTTTGCGGCCGAAGCTCATC 62.315 60.000 33.48 9.04 39.73 2.92
329 330 2.359850 TTTGCGGCCGAAGCTCAT 60.360 55.556 33.48 0.00 39.73 2.90
330 331 3.049674 CTTTGCGGCCGAAGCTCA 61.050 61.111 33.48 14.73 39.73 4.26
339 340 0.249031 GACCAATATGGCTTTGCGGC 60.249 55.000 0.00 0.00 42.67 6.53
340 341 1.334869 GAGACCAATATGGCTTTGCGG 59.665 52.381 0.00 0.00 42.67 5.69
341 342 1.003545 CGAGACCAATATGGCTTTGCG 60.004 52.381 0.00 0.00 42.67 4.85
342 343 2.017049 ACGAGACCAATATGGCTTTGC 58.983 47.619 0.00 0.00 42.67 3.68
343 344 2.355756 CCACGAGACCAATATGGCTTTG 59.644 50.000 0.00 0.00 42.67 2.77
366 367 0.252197 TGACGAGTCCTCCAGATCGA 59.748 55.000 0.00 0.00 38.50 3.59
384 385 1.788203 GCGTGCACGTTCGTTGATG 60.788 57.895 36.80 8.83 42.22 3.07
385 386 2.549282 GCGTGCACGTTCGTTGAT 59.451 55.556 36.80 0.00 42.22 2.57
387 388 3.276409 ATCGCGTGCACGTTCGTTG 62.276 57.895 36.80 20.54 42.22 4.10
403 404 4.148128 TGGAGAGAGAAAATGGAGCATC 57.852 45.455 0.00 0.00 0.00 3.91
423 424 1.339055 TGGTCCTCCGCAGAAAAGATG 60.339 52.381 0.00 0.00 36.30 2.90
424 425 0.984230 TGGTCCTCCGCAGAAAAGAT 59.016 50.000 0.00 0.00 36.30 2.40
433 434 2.614057 CAGATATTTTGTGGTCCTCCGC 59.386 50.000 0.00 0.00 43.87 5.54
457 458 1.521450 CTGAAAGCTGTGGGTGCCTG 61.521 60.000 0.00 0.00 0.00 4.85
469 470 4.545208 AGGAGGTACTTCTTCTGAAAGC 57.455 45.455 4.85 0.00 46.22 3.51
486 487 2.125350 GGTGCCTCGCAGAAGGAG 60.125 66.667 1.09 0.00 40.08 3.69
491 492 1.826340 TAAAGCAGGTGCCTCGCAGA 61.826 55.000 12.62 0.00 40.08 4.26
494 495 2.754995 GCTAAAGCAGGTGCCTCGC 61.755 63.158 0.00 5.06 43.38 5.03
528 529 3.986442 CCTCGTAGGCTAGTTAGGTTC 57.014 52.381 0.00 0.00 0.00 3.62
543 544 1.671054 CCCAAACGTGATGCCTCGT 60.671 57.895 0.00 0.00 43.29 4.18
546 547 2.676471 GCCCCAAACGTGATGCCT 60.676 61.111 0.00 0.00 0.00 4.75
548 549 2.568090 CAGCCCCAAACGTGATGC 59.432 61.111 0.00 0.00 0.00 3.91
567 568 2.825836 GGAGAGCATGGCCAACGG 60.826 66.667 10.96 3.32 0.00 4.44
572 573 0.990374 ATATCCTGGAGAGCATGGCC 59.010 55.000 1.52 0.00 0.00 5.36
573 574 3.988976 TTATATCCTGGAGAGCATGGC 57.011 47.619 1.52 0.00 0.00 4.40
574 575 6.996879 CCATATTTATATCCTGGAGAGCATGG 59.003 42.308 1.52 5.02 0.00 3.66
575 576 6.485984 GCCATATTTATATCCTGGAGAGCATG 59.514 42.308 1.52 0.00 0.00 4.06
576 577 6.410157 GGCCATATTTATATCCTGGAGAGCAT 60.410 42.308 1.52 0.00 0.00 3.79
577 578 5.104360 GGCCATATTTATATCCTGGAGAGCA 60.104 44.000 1.52 0.00 0.00 4.26
578 579 5.104360 TGGCCATATTTATATCCTGGAGAGC 60.104 44.000 0.00 0.00 0.00 4.09
584 585 8.868522 TTCTCTTTGGCCATATTTATATCCTG 57.131 34.615 6.09 0.00 0.00 3.86
588 589 8.710749 TTGCTTCTCTTTGGCCATATTTATAT 57.289 30.769 6.09 0.00 0.00 0.86
654 655 9.710900 GTCACCAGAATAATTTCTTTTCCATTT 57.289 29.630 0.00 0.00 40.28 2.32
655 656 8.869109 TGTCACCAGAATAATTTCTTTTCCATT 58.131 29.630 0.00 0.00 40.28 3.16
657 658 7.831691 TGTCACCAGAATAATTTCTTTTCCA 57.168 32.000 0.00 0.00 40.28 3.53
658 659 9.541143 TTTTGTCACCAGAATAATTTCTTTTCC 57.459 29.630 0.00 0.00 40.28 3.13
661 662 9.045223 GCTTTTTGTCACCAGAATAATTTCTTT 57.955 29.630 0.00 0.00 40.28 2.52
662 663 8.424133 AGCTTTTTGTCACCAGAATAATTTCTT 58.576 29.630 0.00 0.00 40.28 2.52
663 664 7.955918 AGCTTTTTGTCACCAGAATAATTTCT 58.044 30.769 0.00 0.00 43.09 2.52
666 667 6.494835 AGGAGCTTTTTGTCACCAGAATAATT 59.505 34.615 0.00 0.00 0.00 1.40
667 668 6.012745 AGGAGCTTTTTGTCACCAGAATAAT 58.987 36.000 0.00 0.00 0.00 1.28
668 669 5.385198 AGGAGCTTTTTGTCACCAGAATAA 58.615 37.500 0.00 0.00 0.00 1.40
669 670 4.985538 AGGAGCTTTTTGTCACCAGAATA 58.014 39.130 0.00 0.00 0.00 1.75
670 671 3.823304 GAGGAGCTTTTTGTCACCAGAAT 59.177 43.478 0.00 0.00 0.00 2.40
671 672 3.117888 AGAGGAGCTTTTTGTCACCAGAA 60.118 43.478 0.00 0.00 0.00 3.02
672 673 2.439507 AGAGGAGCTTTTTGTCACCAGA 59.560 45.455 0.00 0.00 0.00 3.86
673 674 2.856222 AGAGGAGCTTTTTGTCACCAG 58.144 47.619 0.00 0.00 0.00 4.00
674 675 4.008074 CTAGAGGAGCTTTTTGTCACCA 57.992 45.455 0.00 0.00 0.00 4.17
721 722 2.224549 CCGAACATGCTACGGTGAAAAA 59.775 45.455 14.73 0.00 41.47 1.94
735 736 5.644636 ACGGAATGTTGTATTTACCGAACAT 59.355 36.000 0.00 0.00 40.03 2.71
741 742 8.120465 CAGATGTTACGGAATGTTGTATTTACC 58.880 37.037 0.00 0.00 0.00 2.85
759 760 8.138074 CCTCGAATATTCAGACTTCAGATGTTA 58.862 37.037 15.57 0.00 0.00 2.41
770 771 5.220681 GCAAAACTCCCTCGAATATTCAGAC 60.221 44.000 15.57 0.00 0.00 3.51
795 796 1.276421 GCTCTCTGTAGCCAGTTGGAA 59.724 52.381 1.45 0.00 39.82 3.53
804 805 0.529833 TGTGCTCTGCTCTCTGTAGC 59.470 55.000 0.00 0.00 43.08 3.58
839 840 9.443283 CTGAACTTTGTTCTTCTGAAAATACTG 57.557 33.333 11.06 0.00 33.52 2.74
845 951 6.659242 ACTTCCTGAACTTTGTTCTTCTGAAA 59.341 34.615 11.06 0.00 33.52 2.69
866 972 5.006261 AGGCGTAAAATTTTGTGCAAACTTC 59.994 36.000 22.58 10.22 0.00 3.01
869 975 4.787381 AGGCGTAAAATTTTGTGCAAAC 57.213 36.364 22.58 9.40 0.00 2.93
915 1021 1.295792 AGCTGCTTTTTCGAACGTGA 58.704 45.000 0.00 0.00 0.00 4.35
970 1076 2.472909 CGATTTGGAGGGAAGCGCC 61.473 63.158 2.29 0.00 0.00 6.53
971 1077 3.102097 CGATTTGGAGGGAAGCGC 58.898 61.111 0.00 0.00 0.00 5.92
972 1078 2.472909 GGCGATTTGGAGGGAAGCG 61.473 63.158 0.00 0.00 38.76 4.68
973 1079 2.472909 CGGCGATTTGGAGGGAAGC 61.473 63.158 0.00 0.00 0.00 3.86
974 1080 0.179045 ATCGGCGATTTGGAGGGAAG 60.179 55.000 18.14 0.00 0.00 3.46
975 1081 1.124780 TATCGGCGATTTGGAGGGAA 58.875 50.000 28.93 3.07 0.00 3.97
976 1082 0.391597 GTATCGGCGATTTGGAGGGA 59.608 55.000 28.93 3.90 0.00 4.20
977 1083 0.602905 GGTATCGGCGATTTGGAGGG 60.603 60.000 28.93 0.00 0.00 4.30
1107 1213 0.679321 GCAGGAGGGAGCAAAAGAGG 60.679 60.000 0.00 0.00 0.00 3.69
1109 1215 1.380302 GGCAGGAGGGAGCAAAAGA 59.620 57.895 0.00 0.00 0.00 2.52
1110 1216 1.680314 GGGCAGGAGGGAGCAAAAG 60.680 63.158 0.00 0.00 0.00 2.27
1111 1217 2.142292 GAGGGCAGGAGGGAGCAAAA 62.142 60.000 0.00 0.00 0.00 2.44
1119 1225 4.888325 ATCGGGGAGGGCAGGAGG 62.888 72.222 0.00 0.00 0.00 4.30
1344 1450 3.637273 GGGAGGTTGGTGCGGAGT 61.637 66.667 0.00 0.00 0.00 3.85
1524 1630 4.779733 GCCTCCCTCCGGACTCCA 62.780 72.222 0.00 0.00 33.32 3.86
1611 1717 3.248630 ATTGCAAACCACGACGGCG 62.249 57.895 10.39 10.39 44.79 6.46
1687 1793 2.224079 TGTTCTGCTCAATTGCGAGTTC 59.776 45.455 0.00 0.00 35.33 3.01
1694 1800 6.038356 ACTTGTTCTTTGTTCTGCTCAATTG 58.962 36.000 0.00 0.00 0.00 2.32
1713 1819 6.042681 AACCAGGGTTCAACAAACTACTTGT 61.043 40.000 0.00 0.00 41.26 3.16
1714 1820 3.951680 ACCAGGGTTCAACAAACTACTTG 59.048 43.478 0.00 0.00 41.19 3.16
1715 1821 4.245251 ACCAGGGTTCAACAAACTACTT 57.755 40.909 0.00 0.00 38.02 2.24
1716 1822 3.945640 ACCAGGGTTCAACAAACTACT 57.054 42.857 0.00 0.00 38.02 2.57
1801 1945 6.017325 CACGACATGTACAATGTCAAGATTG 58.983 40.000 24.95 15.93 46.38 2.67
1865 2009 3.777106 TCCTCTCACAGAGCACAAAAT 57.223 42.857 0.00 0.00 40.98 1.82
1911 2055 7.330946 CAGATTTTCTTGTTACGATCACTACCA 59.669 37.037 0.00 0.00 0.00 3.25
1997 2143 1.379642 GGAAGCTACATGCACCAGGC 61.380 60.000 0.00 0.00 45.94 4.85
1998 2144 1.091771 CGGAAGCTACATGCACCAGG 61.092 60.000 0.00 0.00 45.94 4.45
1999 2145 2.387309 CGGAAGCTACATGCACCAG 58.613 57.895 0.00 0.00 45.94 4.00
2000 2146 4.615901 CGGAAGCTACATGCACCA 57.384 55.556 0.00 0.00 45.94 4.17
2025 2171 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2032 2178 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2033 2179 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2034 2180 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2035 2181 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2036 2182 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2037 2183 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2038 2184 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2039 2185 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2040 2186 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2045 2191 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2046 2192 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2047 2193 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2048 2194 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2049 2195 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2050 2196 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2051 2197 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2052 2198 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2053 2199 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2054 2200 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2055 2201 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2056 2202 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2057 2203 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2058 2204 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2059 2205 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2060 2206 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2061 2207 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2062 2208 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2063 2209 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2064 2210 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2065 2211 1.463674 AAATGTAGGGAAAGGCTGCG 58.536 50.000 0.00 0.00 0.00 5.18
2066 2212 3.006859 ACAAAAATGTAGGGAAAGGCTGC 59.993 43.478 0.00 0.00 0.00 5.25
2067 2213 4.871933 ACAAAAATGTAGGGAAAGGCTG 57.128 40.909 0.00 0.00 0.00 4.85
2068 2214 6.311735 TCTTACAAAAATGTAGGGAAAGGCT 58.688 36.000 0.00 0.00 0.00 4.58
2069 2215 6.350194 CCTCTTACAAAAATGTAGGGAAAGGC 60.350 42.308 0.00 0.00 0.00 4.35
2070 2216 6.350194 GCCTCTTACAAAAATGTAGGGAAAGG 60.350 42.308 0.00 0.87 0.00 3.11
2071 2217 6.434340 AGCCTCTTACAAAAATGTAGGGAAAG 59.566 38.462 0.00 0.00 0.00 2.62
2072 2218 6.208599 CAGCCTCTTACAAAAATGTAGGGAAA 59.791 38.462 0.00 0.00 0.00 3.13
2073 2219 5.710099 CAGCCTCTTACAAAAATGTAGGGAA 59.290 40.000 0.00 0.00 0.00 3.97
2074 2220 5.222048 ACAGCCTCTTACAAAAATGTAGGGA 60.222 40.000 0.00 0.00 0.00 4.20
2075 2221 5.010282 ACAGCCTCTTACAAAAATGTAGGG 58.990 41.667 0.00 1.17 0.00 3.53
2076 2222 6.575162 AACAGCCTCTTACAAAAATGTAGG 57.425 37.500 0.00 0.00 0.00 3.18
2077 2223 7.084486 GGAAACAGCCTCTTACAAAAATGTAG 58.916 38.462 0.00 0.00 0.00 2.74
2078 2224 6.547880 TGGAAACAGCCTCTTACAAAAATGTA 59.452 34.615 0.00 0.00 35.01 2.29
2079 2225 5.362430 TGGAAACAGCCTCTTACAAAAATGT 59.638 36.000 0.00 0.00 35.01 2.71
2080 2226 5.841810 TGGAAACAGCCTCTTACAAAAATG 58.158 37.500 0.00 0.00 35.01 2.32
2096 2242 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2097 2243 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2098 2244 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2099 2245 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2100 2246 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2101 2247 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2102 2248 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2103 2249 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2104 2250 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2105 2251 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2106 2252 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2107 2253 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2108 2254 0.605319 GCATGAGGTCACGGGTTCAA 60.605 55.000 0.00 0.00 0.00 2.69
2109 2255 1.003839 GCATGAGGTCACGGGTTCA 60.004 57.895 0.00 0.00 0.00 3.18
2110 2256 0.392998 ATGCATGAGGTCACGGGTTC 60.393 55.000 0.00 0.00 0.00 3.62
2111 2257 0.677731 CATGCATGAGGTCACGGGTT 60.678 55.000 22.59 0.00 0.00 4.11
2112 2258 1.078214 CATGCATGAGGTCACGGGT 60.078 57.895 22.59 0.00 0.00 5.28
2113 2259 1.078214 ACATGCATGAGGTCACGGG 60.078 57.895 32.75 2.55 0.00 5.28
2114 2260 1.371337 CCACATGCATGAGGTCACGG 61.371 60.000 32.75 15.55 34.38 4.94
2115 2261 0.674581 ACCACATGCATGAGGTCACG 60.675 55.000 34.73 16.76 46.64 4.35
2116 2262 2.009774 GTACCACATGCATGAGGTCAC 58.990 52.381 40.62 31.46 46.64 3.67
2117 2263 1.627834 TGTACCACATGCATGAGGTCA 59.372 47.619 40.62 33.18 46.64 4.02
2118 2264 2.401583 TGTACCACATGCATGAGGTC 57.598 50.000 40.62 31.59 46.64 3.85
2120 2266 3.949754 AGATTTGTACCACATGCATGAGG 59.050 43.478 33.51 33.51 43.13 3.86
2121 2267 4.260497 CGAGATTTGTACCACATGCATGAG 60.260 45.833 32.75 24.31 0.00 2.90
2122 2268 3.622612 CGAGATTTGTACCACATGCATGA 59.377 43.478 32.75 7.78 0.00 3.07
2123 2269 3.622612 TCGAGATTTGTACCACATGCATG 59.377 43.478 25.09 25.09 0.00 4.06
2124 2270 3.872696 TCGAGATTTGTACCACATGCAT 58.127 40.909 0.00 0.00 0.00 3.96
2153 2299 3.567576 AGATCGTAGGATGCAGATTCG 57.432 47.619 1.92 0.00 31.51 3.34
2185 2331 2.289382 TGCTAAACCGTGAATCAGCTGA 60.289 45.455 20.79 20.79 0.00 4.26
2197 2343 7.382218 AGAGTTCAAATCAAATTTGCTAAACCG 59.618 33.333 13.54 0.00 46.96 4.44
2224 2371 7.009357 GCATCTTTCAAGAATTCATCAAGCTTC 59.991 37.037 8.44 0.00 38.77 3.86
2308 2456 7.572523 TTGTGGATCTGATGACCATAAAATC 57.427 36.000 0.00 0.00 36.09 2.17
2352 2500 8.006298 TGTCAATGTTGGAAAGTACAGATTTT 57.994 30.769 0.00 0.00 0.00 1.82
2395 2543 0.590195 GGCTATGCATCTGCTTTCCG 59.410 55.000 19.53 0.00 42.66 4.30
2486 2634 5.162075 AGATAGTTTAGCACGACAACTCAC 58.838 41.667 0.00 0.00 32.88 3.51
2596 2744 2.357034 GACCTCCTTCGCAACGCA 60.357 61.111 0.00 0.00 0.00 5.24
2632 2780 1.594293 CACAAGTGGAAGTCGGCGT 60.594 57.895 6.85 0.00 0.00 5.68
2633 2781 0.878523 TTCACAAGTGGAAGTCGGCG 60.879 55.000 0.00 0.00 0.00 6.46
2706 2856 3.054434 CACCATATTCAACTCACCAGGGA 60.054 47.826 0.00 0.00 0.00 4.20
2708 2858 3.282021 CCACCATATTCAACTCACCAGG 58.718 50.000 0.00 0.00 0.00 4.45
2709 2859 3.955471 ACCACCATATTCAACTCACCAG 58.045 45.455 0.00 0.00 0.00 4.00
2730 2880 2.756207 GCAGCCCCTTTAACGGATAAAA 59.244 45.455 0.00 0.00 33.20 1.52
2791 2941 8.125448 GGTCAATCTGCAAGTAGAACATAATTC 58.875 37.037 0.00 0.00 33.76 2.17
2848 2998 2.223525 GCTTTGATTGAGCTGCCATCTC 60.224 50.000 0.00 0.00 37.18 2.75
2849 2999 1.749634 GCTTTGATTGAGCTGCCATCT 59.250 47.619 0.00 0.00 37.18 2.90
2915 3065 8.357402 AGGTGGTTTGTACAAGAAATATGTTTC 58.643 33.333 8.56 6.82 43.24 2.78
2930 3080 3.134574 AGCGAAATCAGGTGGTTTGTA 57.865 42.857 0.00 0.00 0.00 2.41
2941 3091 2.756829 TCAACCAACGTAGCGAAATCA 58.243 42.857 0.00 0.00 0.00 2.57
2947 3097 1.705256 TAGCTTCAACCAACGTAGCG 58.295 50.000 0.00 0.00 36.96 4.26
2953 3103 5.376854 ACACATGATTAGCTTCAACCAAC 57.623 39.130 0.00 0.00 0.00 3.77
2982 3132 6.163476 CAGGTAGCTAGACAACATACAAACA 58.837 40.000 0.00 0.00 0.00 2.83
2983 3133 6.164176 ACAGGTAGCTAGACAACATACAAAC 58.836 40.000 0.00 0.00 0.00 2.93
3093 3243 1.070758 GACAGTTCAGGAGCCACTTCA 59.929 52.381 0.00 0.00 0.00 3.02
3108 3258 2.359900 GGCAATCCGATGAAAGACAGT 58.640 47.619 0.00 0.00 0.00 3.55
3138 3288 7.594758 GCACAGCAGAAATTTAGACACAAATTA 59.405 33.333 0.00 0.00 37.17 1.40
3163 3313 6.761731 CAGTTATAAGTGCATCTAGACTGC 57.238 41.667 15.90 15.90 40.10 4.40
3215 3365 0.329261 TGGATGAAACAGAGGCCAGG 59.671 55.000 5.01 0.00 0.00 4.45
3454 3604 5.601662 TCTAGCTCCCTTAACATGATTTCG 58.398 41.667 0.00 0.00 0.00 3.46
3477 3627 3.572255 TCCGCCAAGAAAAGCTTTGTTAT 59.428 39.130 13.54 0.00 33.60 1.89
3504 3654 5.622007 CGCCCACAATTCACAGAAATATGTT 60.622 40.000 0.00 0.00 0.00 2.71
3618 3768 2.185350 CTCCGCGAGCCAGTCATT 59.815 61.111 8.23 0.00 0.00 2.57
3692 3842 2.633488 GGACGAGCAGCCTTATTCTTT 58.367 47.619 0.00 0.00 0.00 2.52
3722 3872 0.032540 CATCATCCCACTCATCGCGA 59.967 55.000 13.09 13.09 0.00 5.87
3908 4066 4.450976 TCACAATCGATTAAGGTCATGGG 58.549 43.478 10.97 0.00 0.00 4.00
3990 4149 3.134127 GATTCCCGGCTGGTGCAC 61.134 66.667 11.58 8.80 41.91 4.57
4065 4224 5.805728 AGAGGTAATGGTTAGTTCCAACAG 58.194 41.667 0.00 0.00 41.09 3.16
4068 4227 9.670442 AGATATAGAGGTAATGGTTAGTTCCAA 57.330 33.333 0.00 0.00 41.09 3.53
4144 4305 5.827797 GCTTCAATGGTCCCATACTGAAATA 59.172 40.000 12.28 0.00 34.66 1.40
4177 4338 5.115724 AGAATTAGCTTCTGACCTCTCGGT 61.116 45.833 0.00 0.00 42.76 4.69
4318 4479 9.628746 CAATGATGAAGATATTCACACACAAAA 57.371 29.630 4.61 0.00 33.23 2.44
4517 4678 2.308570 ACATTGGTAGTGCCCTTCATCA 59.691 45.455 0.00 0.00 36.04 3.07
4518 4679 3.004752 ACATTGGTAGTGCCCTTCATC 57.995 47.619 0.00 0.00 36.04 2.92
4519 4680 3.780294 TCTACATTGGTAGTGCCCTTCAT 59.220 43.478 0.00 0.00 45.85 2.57
4520 4681 3.178046 TCTACATTGGTAGTGCCCTTCA 58.822 45.455 0.00 0.00 45.85 3.02
4617 4778 8.978874 ATGTACTCCTACATTGCAATTATCAA 57.021 30.769 9.83 0.00 40.16 2.57
4652 4813 7.388776 CAGAACCTAGACAATCAACTTCAATCA 59.611 37.037 0.00 0.00 0.00 2.57
4657 4818 6.483640 ACAACAGAACCTAGACAATCAACTTC 59.516 38.462 0.00 0.00 0.00 3.01
4663 4824 6.688578 TGTAGACAACAGAACCTAGACAATC 58.311 40.000 0.00 0.00 33.01 2.67
4719 4880 5.545658 TGCGAAAATCATAGACCAACTTC 57.454 39.130 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.