Multiple sequence alignment - TraesCS1B01G223900

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G223900 chr1B 100.000 8058 0 0 1 8058 402048907 402040850 0.000000e+00 14881.0
1 TraesCS1B01G223900 chr1B 86.438 1519 185 11 5502 7003 643253023 643254537 0.000000e+00 1644.0
2 TraesCS1B01G223900 chr1B 94.337 830 35 6 3605 4430 15486659 15487480 0.000000e+00 1262.0
3 TraesCS1B01G223900 chr1B 90.841 939 77 4 4480 5417 517507915 517506985 0.000000e+00 1249.0
4 TraesCS1B01G223900 chr1B 79.367 1517 263 35 5504 7004 677031887 677033369 0.000000e+00 1022.0
5 TraesCS1B01G223900 chr1B 91.031 223 19 1 7836 8058 672954770 672954991 4.730000e-77 300.0
6 TraesCS1B01G223900 chr1B 92.810 153 7 1 7005 7157 517507000 517506852 1.360000e-52 219.0
7 TraesCS1B01G223900 chr1B 91.304 115 10 0 971 1085 517508027 517507913 3.010000e-34 158.0
8 TraesCS1B01G223900 chr1B 76.119 201 33 8 4293 4479 655950249 655950050 3.100000e-14 91.6
9 TraesCS1B01G223900 chr2A 90.825 2594 157 36 1086 3606 235636737 235639322 0.000000e+00 3397.0
10 TraesCS1B01G223900 chr2A 96.627 1512 44 4 5504 7012 651799938 651798431 0.000000e+00 2503.0
11 TraesCS1B01G223900 chr2A 87.229 2028 164 47 1635 3604 43827519 43829509 0.000000e+00 2222.0
12 TraesCS1B01G223900 chr2A 97.563 1108 26 1 5902 7008 4901670 4900563 0.000000e+00 1895.0
13 TraesCS1B01G223900 chr2A 91.126 755 48 4 2870 3606 459103477 459102724 0.000000e+00 1005.0
14 TraesCS1B01G223900 chr2A 88.615 325 20 14 1573 1886 8213390 8213708 5.900000e-101 379.0
15 TraesCS1B01G223900 chr2A 88.213 263 29 1 171 431 685984108 685984370 6.070000e-81 313.0
16 TraesCS1B01G223900 chr6D 94.195 2050 103 9 1564 3606 387862883 387864923 0.000000e+00 3112.0
17 TraesCS1B01G223900 chr6D 92.622 2033 112 18 1607 3606 283240645 283238618 0.000000e+00 2889.0
18 TraesCS1B01G223900 chr6D 90.765 1137 68 15 1592 2718 218309783 218310892 0.000000e+00 1483.0
19 TraesCS1B01G223900 chr6D 93.356 888 42 5 3605 4480 306432819 306433701 0.000000e+00 1297.0
20 TraesCS1B01G223900 chr6D 82.648 876 104 25 1 843 119819323 119818463 0.000000e+00 732.0
21 TraesCS1B01G223900 chr6D 89.267 587 29 19 1564 2149 413628891 413629444 0.000000e+00 704.0
22 TraesCS1B01G223900 chr6D 82.331 798 71 47 1086 1841 426548805 426549574 5.310000e-176 628.0
23 TraesCS1B01G223900 chr6D 90.632 459 40 3 1086 1542 283241606 283241149 2.490000e-169 606.0
24 TraesCS1B01G223900 chr6D 89.294 439 46 1 1084 1521 223561286 223560848 4.250000e-152 549.0
25 TraesCS1B01G223900 chr6D 90.431 418 33 6 1086 1501 387862508 387862920 1.980000e-150 544.0
26 TraesCS1B01G223900 chr6D 87.152 467 39 16 1086 1543 61602729 61603183 2.010000e-140 510.0
27 TraesCS1B01G223900 chr6D 77.854 876 148 27 1 839 392579712 392580578 1.210000e-137 501.0
28 TraesCS1B01G223900 chr6D 85.047 428 34 19 1085 1506 218309279 218309682 7.530000e-110 409.0
29 TraesCS1B01G223900 chr6D 84.925 398 45 8 51 434 455420313 455420709 9.810000e-104 388.0
30 TraesCS1B01G223900 chr6D 91.103 281 23 2 1086 1364 430119599 430119879 5.900000e-101 379.0
31 TraesCS1B01G223900 chr6D 89.732 224 20 3 7836 8058 289222413 289222192 4.760000e-72 283.0
32 TraesCS1B01G223900 chr6D 89.686 223 20 3 7837 8058 7446945 7447165 1.710000e-71 281.0
33 TraesCS1B01G223900 chr6D 88.426 216 21 4 7837 8051 38240662 38240450 2.890000e-64 257.0
34 TraesCS1B01G223900 chr6D 87.054 224 26 3 7836 8058 58438080 58437859 4.830000e-62 250.0
35 TraesCS1B01G223900 chr6D 86.161 224 28 3 7836 8058 202944082 202944303 1.050000e-58 239.0
36 TraesCS1B01G223900 chr6D 77.428 381 69 13 472 842 459812894 459813267 2.280000e-50 211.0
37 TraesCS1B01G223900 chr6D 90.698 129 11 1 6874 7001 47811635 47811763 3.870000e-38 171.0
38 TraesCS1B01G223900 chr6D 84.564 149 16 7 6860 7004 39090360 39090505 3.030000e-29 141.0
39 TraesCS1B01G223900 chr6D 83.916 143 15 5 706 842 403037342 403037202 6.560000e-26 130.0
40 TraesCS1B01G223900 chr6D 85.484 124 14 4 6882 7003 458724823 458724702 8.490000e-25 126.0
41 TraesCS1B01G223900 chr6D 77.914 163 27 6 7836 7996 426973274 426973119 8.610000e-15 93.5
42 TraesCS1B01G223900 chr6D 86.364 66 7 2 7826 7890 147888487 147888423 4.030000e-08 71.3
43 TraesCS1B01G223900 chr6D 91.489 47 2 1 796 842 42418835 42418879 6.750000e-06 63.9
44 TraesCS1B01G223900 chr6D 91.489 47 2 1 797 843 454578472 454578428 6.750000e-06 63.9
45 TraesCS1B01G223900 chr6D 89.583 48 3 1 797 844 193479441 193479486 8.730000e-05 60.2
46 TraesCS1B01G223900 chr6D 82.090 67 10 2 778 843 34591342 34591407 1.000000e-03 56.5
47 TraesCS1B01G223900 chr7D 92.333 2152 121 25 1483 3606 259648903 259651038 0.000000e+00 3020.0
48 TraesCS1B01G223900 chr7D 93.251 889 42 4 3605 4481 167029030 167029912 0.000000e+00 1293.0
49 TraesCS1B01G223900 chr7D 94.686 828 38 2 3606 4433 16228213 16229034 0.000000e+00 1280.0
50 TraesCS1B01G223900 chr7D 92.929 891 41 11 3605 4479 267768753 267769637 0.000000e+00 1277.0
51 TraesCS1B01G223900 chr7D 93.010 887 41 6 3605 4479 64183885 64183008 0.000000e+00 1275.0
52 TraesCS1B01G223900 chr7D 84.371 883 92 16 1 842 223095994 223095117 0.000000e+00 824.0
53 TraesCS1B01G223900 chr7D 81.609 870 116 30 1 840 222136212 222137067 0.000000e+00 680.0
54 TraesCS1B01G223900 chr7D 80.432 879 133 20 1 847 552311293 552310422 1.140000e-177 634.0
55 TraesCS1B01G223900 chr7D 91.224 433 32 5 1079 1510 167017769 167018196 1.170000e-162 584.0
56 TraesCS1B01G223900 chr7D 90.238 420 38 3 1086 1502 259648539 259648958 5.500000e-151 545.0
57 TraesCS1B01G223900 chr7D 84.634 423 54 8 1 413 594959323 594959744 2.090000e-110 411.0
58 TraesCS1B01G223900 chr7D 84.533 375 51 4 472 842 594965692 594966063 1.650000e-96 364.0
59 TraesCS1B01G223900 chr7D 81.579 456 57 13 401 842 615930830 615931272 1.290000e-92 351.0
60 TraesCS1B01G223900 chr7D 80.401 449 72 8 401 840 3329841 3329400 2.170000e-85 327.0
61 TraesCS1B01G223900 chr7D 90.179 224 19 3 7836 8058 89876649 89876870 1.020000e-73 289.0
62 TraesCS1B01G223900 chr7D 87.712 236 25 4 7825 8058 40736473 40736240 1.030000e-68 272.0
63 TraesCS1B01G223900 chr7D 93.258 89 4 2 7062 7149 168811102 168811015 6.560000e-26 130.0
64 TraesCS1B01G223900 chr7D 89.474 57 3 3 955 1008 169041002 169040946 1.450000e-07 69.4
65 TraesCS1B01G223900 chr7A 93.029 1994 105 8 1623 3606 602003095 602001126 0.000000e+00 2881.0
66 TraesCS1B01G223900 chr7A 97.403 1502 37 2 5504 7004 59430575 59432075 0.000000e+00 2556.0
67 TraesCS1B01G223900 chr7A 97.467 1500 33 2 5504 7002 704615533 704614038 0.000000e+00 2555.0
68 TraesCS1B01G223900 chr7A 85.714 630 86 4 5504 6131 184347406 184348033 0.000000e+00 662.0
69 TraesCS1B01G223900 chr7A 90.583 223 17 4 7837 8058 92364745 92364964 7.910000e-75 292.0
70 TraesCS1B01G223900 chr7A 90.090 111 9 2 7038 7147 171273632 171273523 8.430000e-30 143.0
71 TraesCS1B01G223900 chr1D 92.699 2027 87 13 1604 3606 34552206 34554195 0.000000e+00 2867.0
72 TraesCS1B01G223900 chr1D 88.759 1281 85 30 1457 2718 210555054 210556294 0.000000e+00 1513.0
73 TraesCS1B01G223900 chr1D 97.733 838 10 4 7005 7833 298605851 298605014 0.000000e+00 1434.0
74 TraesCS1B01G223900 chr1D 89.088 1118 69 17 1 1085 298607725 298606628 0.000000e+00 1339.0
75 TraesCS1B01G223900 chr1D 90.841 939 84 2 4480 5417 385052923 385051986 0.000000e+00 1256.0
76 TraesCS1B01G223900 chr1D 82.000 950 148 18 6070 7002 112097275 112096332 0.000000e+00 785.0
77 TraesCS1B01G223900 chr1D 96.739 460 15 0 4480 4939 298606630 298606171 0.000000e+00 767.0
78 TraesCS1B01G223900 chr1D 91.924 421 28 4 6579 6997 480545076 480544660 1.170000e-162 584.0
79 TraesCS1B01G223900 chr1D 78.894 886 126 39 3 843 394479927 394480796 1.980000e-150 544.0
80 TraesCS1B01G223900 chr1D 91.603 393 30 3 1086 1476 34551391 34551782 2.560000e-149 540.0
81 TraesCS1B01G223900 chr1D 92.135 356 6 2 5063 5417 298606170 298605836 4.370000e-132 483.0
82 TraesCS1B01G223900 chr1D 83.573 487 67 7 1 474 163106747 163106261 2.060000e-120 444.0
83 TraesCS1B01G223900 chr1D 87.406 397 27 19 1455 1841 452241962 452242345 1.240000e-117 435.0
84 TraesCS1B01G223900 chr1D 83.259 448 54 9 4 431 224518502 224518056 7.580000e-105 392.0
85 TraesCS1B01G223900 chr1D 87.861 346 26 12 1595 1925 483534630 483534286 7.580000e-105 392.0
86 TraesCS1B01G223900 chr1D 83.708 356 42 10 497 843 224421381 224421033 1.010000e-83 322.0
87 TraesCS1B01G223900 chr1D 83.146 356 41 11 497 843 224461034 224460689 2.820000e-79 307.0
88 TraesCS1B01G223900 chr1D 88.393 224 23 3 7836 8058 108827252 108827473 4.790000e-67 267.0
89 TraesCS1B01G223900 chr1D 92.810 153 7 1 7005 7157 385052001 385051853 1.360000e-52 219.0
90 TraesCS1B01G223900 chr1D 71.930 684 156 26 5684 6342 62363120 62362448 5.000000e-37 167.0
91 TraesCS1B01G223900 chr1D 92.174 115 9 0 971 1085 385053035 385052921 6.470000e-36 163.0
92 TraesCS1B01G223900 chr1D 84.615 156 18 4 692 842 466932572 466932726 5.040000e-32 150.0
93 TraesCS1B01G223900 chr2D 92.099 1949 108 21 1700 3606 83215682 83213738 0.000000e+00 2706.0
94 TraesCS1B01G223900 chr2D 91.733 1258 78 16 1780 3021 423004197 423005444 0.000000e+00 1724.0
95 TraesCS1B01G223900 chr2D 88.862 1257 115 10 5752 7005 94383480 94384714 0.000000e+00 1522.0
96 TraesCS1B01G223900 chr2D 93.468 888 39 7 3605 4480 263799545 263798665 0.000000e+00 1301.0
97 TraesCS1B01G223900 chr2D 93.348 887 41 4 3605 4479 423023891 423024771 0.000000e+00 1295.0
98 TraesCS1B01G223900 chr2D 92.161 893 58 6 3588 4479 147708595 147707714 0.000000e+00 1251.0
99 TraesCS1B01G223900 chr2D 82.646 824 128 11 6168 6983 338837118 338837934 0.000000e+00 715.0
100 TraesCS1B01G223900 chr2D 82.106 883 111 20 1 841 119799743 119798866 0.000000e+00 712.0
101 TraesCS1B01G223900 chr2D 84.970 672 51 38 1086 1719 509206794 509206135 3.170000e-178 636.0
102 TraesCS1B01G223900 chr2D 91.885 419 31 3 1087 1503 83216760 83216343 4.190000e-162 582.0
103 TraesCS1B01G223900 chr2D 87.029 478 44 14 1085 1554 298730484 298730017 2.580000e-144 523.0
104 TraesCS1B01G223900 chr2D 85.268 448 51 8 1 434 582691783 582692229 1.600000e-121 448.0
105 TraesCS1B01G223900 chr3B 97.073 1503 43 1 5504 7005 503980522 503979020 0.000000e+00 2531.0
106 TraesCS1B01G223900 chr3B 90.000 1690 126 17 1943 3606 772482329 772480657 0.000000e+00 2145.0
107 TraesCS1B01G223900 chr3B 90.040 753 55 5 2870 3604 830317076 830316326 0.000000e+00 957.0
108 TraesCS1B01G223900 chr3B 89.641 753 58 5 2870 3604 15884489 15883739 0.000000e+00 941.0
109 TraesCS1B01G223900 chr3B 91.860 516 23 6 3107 3604 187834708 187834194 0.000000e+00 702.0
110 TraesCS1B01G223900 chr3B 88.471 425 35 4 1 414 109032982 109032561 1.210000e-137 501.0
111 TraesCS1B01G223900 chr3B 82.851 449 60 10 403 840 9341604 9341162 3.530000e-103 387.0
112 TraesCS1B01G223900 chr3B 92.377 223 15 2 7836 8058 792158841 792159061 4.690000e-82 316.0
113 TraesCS1B01G223900 chr3B 90.558 233 21 1 7826 8058 383690521 383690752 2.820000e-79 307.0
114 TraesCS1B01G223900 chr3B 91.480 223 18 1 7836 8058 792119557 792119778 1.020000e-78 305.0
115 TraesCS1B01G223900 chr3B 91.031 223 19 1 7836 8058 792245091 792245312 4.730000e-77 300.0
116 TraesCS1B01G223900 chr6A 91.123 1825 123 13 1795 3606 187489486 187491284 0.000000e+00 2436.0
117 TraesCS1B01G223900 chr6A 86.972 1681 132 45 1082 2718 45864676 45866313 0.000000e+00 1810.0
118 TraesCS1B01G223900 chr6A 83.662 863 112 16 1 842 555937960 555937106 0.000000e+00 785.0
119 TraesCS1B01G223900 chr6A 89.367 442 45 2 1 442 602584530 602584969 9.140000e-154 555.0
120 TraesCS1B01G223900 chr6A 88.197 466 47 6 1086 1550 187488533 187488991 4.250000e-152 549.0
121 TraesCS1B01G223900 chr6A 86.353 425 56 2 6579 7002 9248850 9248427 5.700000e-126 462.0
122 TraesCS1B01G223900 chr6A 85.816 423 50 3 1 413 594403405 594402983 2.670000e-119 440.0
123 TraesCS1B01G223900 chr6A 87.423 326 40 1 6579 6903 9314849 9314524 2.750000e-99 374.0
124 TraesCS1B01G223900 chr6A 88.789 223 22 3 7837 8058 346587543 346587323 3.710000e-68 270.0
125 TraesCS1B01G223900 chr6A 87.500 152 17 2 6854 7004 613392206 613392356 2.990000e-39 174.0
126 TraesCS1B01G223900 chr6A 81.879 149 13 7 4344 4479 296711895 296711748 6.610000e-21 113.0
127 TraesCS1B01G223900 chr4A 90.058 1901 133 26 1734 3606 258509750 258507878 0.000000e+00 2412.0
128 TraesCS1B01G223900 chr4A 80.630 1523 253 28 5504 7005 270204427 270202926 0.000000e+00 1140.0
129 TraesCS1B01G223900 chr4A 80.600 866 140 11 1 842 483385123 483384262 1.900000e-180 643.0
130 TraesCS1B01G223900 chr4A 78.734 964 171 24 6054 7001 737081637 737082582 1.490000e-171 614.0
131 TraesCS1B01G223900 chr4A 90.179 224 19 3 7836 8058 71082659 71082438 1.020000e-73 289.0
132 TraesCS1B01G223900 chr4A 76.617 201 32 7 4293 4479 670614152 670614351 6.660000e-16 97.1
133 TraesCS1B01G223900 chr6B 95.206 1502 52 6 5504 7004 41563106 41561624 0.000000e+00 2357.0
134 TraesCS1B01G223900 chr6B 86.684 1517 178 13 5502 7001 50462377 50463886 0.000000e+00 1661.0
135 TraesCS1B01G223900 chr6B 83.051 885 91 25 1 843 211813200 211812333 0.000000e+00 749.0
136 TraesCS1B01G223900 chr6B 90.625 224 19 2 7836 8058 169099300 169099522 6.110000e-76 296.0
137 TraesCS1B01G223900 chr6B 90.583 223 20 1 7836 8058 703296245 703296466 2.200000e-75 294.0
138 TraesCS1B01G223900 chr6B 90.541 222 20 1 7837 8058 715187277 715187057 7.910000e-75 292.0
139 TraesCS1B01G223900 chr3D 90.316 1487 136 4 5521 7003 431835878 431834396 0.000000e+00 1941.0
140 TraesCS1B01G223900 chr3D 87.955 1677 133 44 1086 2718 18095005 18093354 0.000000e+00 1914.0
141 TraesCS1B01G223900 chr3D 94.572 829 33 5 3605 4433 485223927 485223111 0.000000e+00 1271.0
142 TraesCS1B01G223900 chr3D 79.354 867 133 30 1 842 320632801 320631956 1.170000e-157 568.0
143 TraesCS1B01G223900 chr3D 86.860 449 41 12 1081 1526 584671127 584671560 3.380000e-133 486.0
144 TraesCS1B01G223900 chr3D 86.085 424 47 4 1 413 506108344 506108766 5.740000e-121 446.0
145 TraesCS1B01G223900 chr3D 84.787 447 55 5 1 434 526066648 526067094 3.450000e-118 436.0
146 TraesCS1B01G223900 chr3D 85.377 424 50 4 1 413 506115963 506116385 5.780000e-116 429.0
147 TraesCS1B01G223900 chr3D 89.686 223 20 3 7837 8058 582155481 582155701 1.710000e-71 281.0
148 TraesCS1B01G223900 chr7B 98.387 1054 16 1 5950 7003 720348716 720349768 0.000000e+00 1851.0
149 TraesCS1B01G223900 chr7B 88.377 1497 151 6 5509 7002 641063921 641062445 0.000000e+00 1779.0
150 TraesCS1B01G223900 chr7B 86.948 1517 178 9 5505 7005 158925874 158924362 0.000000e+00 1687.0
151 TraesCS1B01G223900 chr7B 87.960 706 44 24 1446 2137 406098546 406097868 0.000000e+00 795.0
152 TraesCS1B01G223900 chr7B 87.318 481 45 6 1 471 176763155 176763629 3.310000e-148 536.0
153 TraesCS1B01G223900 chr7B 87.082 449 49 2 1 440 634847374 634847822 4.340000e-137 499.0
154 TraesCS1B01G223900 chr7B 85.372 417 59 2 1 415 228797848 228797432 1.610000e-116 431.0
155 TraesCS1B01G223900 chr7B 92.130 216 16 1 7843 8058 333401226 333401440 3.650000e-78 303.0
156 TraesCS1B01G223900 chr7B 90.179 224 20 2 7836 8058 41358304 41358526 2.840000e-74 291.0
157 TraesCS1B01G223900 chr7B 93.258 89 4 2 7062 7149 134303637 134303550 6.560000e-26 130.0
158 TraesCS1B01G223900 chr7B 80.272 147 17 4 4345 4479 722281028 722280882 5.150000e-17 100.0
159 TraesCS1B01G223900 chr7B 77.941 136 19 5 960 1085 134304990 134304856 3.120000e-09 75.0
160 TraesCS1B01G223900 chr4B 86.917 1521 178 11 5502 7005 139143333 139144849 0.000000e+00 1687.0
161 TraesCS1B01G223900 chr4B 85.431 707 85 7 5964 6655 606572196 606571493 0.000000e+00 719.0
162 TraesCS1B01G223900 chr4B 87.356 435 53 2 1 434 574178935 574179368 1.560000e-136 497.0
163 TraesCS1B01G223900 chr4B 89.831 354 35 1 6654 7006 606562808 606562455 3.430000e-123 453.0
164 TraesCS1B01G223900 chr4B 81.637 452 68 7 401 843 91117012 91116567 2.140000e-95 361.0
165 TraesCS1B01G223900 chr4B 94.397 232 13 0 5659 5890 659528362 659528593 2.770000e-94 357.0
166 TraesCS1B01G223900 chr4B 80.624 449 72 12 401 843 460270518 460270079 4.660000e-87 333.0
167 TraesCS1B01G223900 chr4B 88.400 250 24 4 7809 8058 642400141 642399897 6.110000e-76 296.0
168 TraesCS1B01G223900 chr4B 89.732 224 20 3 7836 8058 659614415 659614636 4.760000e-72 283.0
169 TraesCS1B01G223900 chr4B 95.868 121 5 0 5502 5622 659528021 659528141 6.380000e-46 196.0
170 TraesCS1B01G223900 chr5B 85.917 1548 141 40 1220 2718 308379921 308381440 0.000000e+00 1580.0
171 TraesCS1B01G223900 chr5B 88.745 462 43 8 1085 1544 288159087 288159541 2.540000e-154 556.0
172 TraesCS1B01G223900 chr5B 83.026 542 81 10 6472 7008 492143891 492143356 1.570000e-131 481.0
173 TraesCS1B01G223900 chr5B 80.804 448 61 11 401 836 2028202 2028636 2.170000e-85 327.0
174 TraesCS1B01G223900 chr5B 89.686 223 22 1 7836 8058 113687896 113688117 4.760000e-72 283.0
175 TraesCS1B01G223900 chr2B 85.872 1543 145 41 1220 2718 8908541 8910054 0.000000e+00 1574.0
176 TraesCS1B01G223900 chr2B 88.041 1271 94 33 1474 2718 332807998 332806760 0.000000e+00 1452.0
177 TraesCS1B01G223900 chr2B 85.657 1248 105 30 1457 2684 781966673 781965480 0.000000e+00 1245.0
178 TraesCS1B01G223900 chr2B 90.129 233 22 1 7826 8058 472902428 472902659 1.310000e-77 302.0
179 TraesCS1B01G223900 chr2B 90.991 222 19 1 7837 8058 757463400 757463180 1.700000e-76 298.0
180 TraesCS1B01G223900 chr2B 90.625 224 18 3 7836 8058 780018346 780018567 2.200000e-75 294.0
181 TraesCS1B01G223900 chr2B 89.912 228 20 3 7832 8058 41825071 41825296 2.840000e-74 291.0
182 TraesCS1B01G223900 chrUn 89.240 1171 88 15 1565 2718 60557519 60558668 0.000000e+00 1430.0
183 TraesCS1B01G223900 chrUn 88.673 1183 81 36 1674 2846 96253107 96251968 0.000000e+00 1393.0
184 TraesCS1B01G223900 chrUn 91.917 433 33 2 1086 1517 314671860 314671429 8.940000e-169 604.0
185 TraesCS1B01G223900 chrUn 88.272 486 36 15 1086 1555 96269788 96269308 5.460000e-156 562.0
186 TraesCS1B01G223900 chrUn 80.270 740 105 23 1 706 95197643 95198375 3.330000e-143 520.0
187 TraesCS1B01G223900 chrUn 85.355 437 51 7 7 430 39721683 39721247 2.670000e-119 440.0
188 TraesCS1B01G223900 chrUn 88.235 357 18 14 1592 1925 96253284 96252929 9.740000e-109 405.0
189 TraesCS1B01G223900 chrUn 80.624 449 72 12 401 843 233403756 233403317 4.660000e-87 333.0
190 TraesCS1B01G223900 chrUn 89.732 224 20 3 7836 8058 51914944 51915165 4.760000e-72 283.0
191 TraesCS1B01G223900 chrUn 89.720 214 22 0 1086 1299 363363210 363363423 2.870000e-69 274.0
192 TraesCS1B01G223900 chrUn 89.720 214 22 0 1086 1299 363379450 363379663 2.870000e-69 274.0
193 TraesCS1B01G223900 chrUn 81.164 292 37 9 1226 1506 466690514 466690798 1.360000e-52 219.0
194 TraesCS1B01G223900 chrUn 94.643 112 6 0 1676 1787 96253002 96252891 2.990000e-39 174.0
195 TraesCS1B01G223900 chrUn 93.636 110 4 2 1086 1192 60556719 60556828 2.330000e-35 161.0
196 TraesCS1B01G223900 chrUn 94.231 104 6 0 1086 1189 342270656 342270759 8.370000e-35 159.0
197 TraesCS1B01G223900 chrUn 94.231 104 6 0 1086 1189 467721372 467721269 8.370000e-35 159.0
198 TraesCS1B01G223900 chrUn 87.692 130 12 4 6882 7008 80139384 80139256 1.810000e-31 148.0
199 TraesCS1B01G223900 chrUn 87.692 130 12 4 6882 7008 223956715 223956843 1.810000e-31 148.0
200 TraesCS1B01G223900 chrUn 93.878 98 6 0 1086 1183 438316837 438316934 1.810000e-31 148.0
201 TraesCS1B01G223900 chrUn 92.857 98 6 1 1220 1316 438316930 438317027 3.030000e-29 141.0
202 TraesCS1B01G223900 chrUn 83.766 154 18 7 6855 7004 291270701 291270851 1.090000e-28 139.0
203 TraesCS1B01G223900 chrUn 87.097 124 13 3 6882 7003 291470199 291470077 3.920000e-28 137.0
204 TraesCS1B01G223900 chrUn 90.909 99 9 0 6904 7002 8839772 8839674 5.070000e-27 134.0
205 TraesCS1B01G223900 chrUn 89.524 105 10 1 6899 7003 51207953 51208056 1.820000e-26 132.0
206 TraesCS1B01G223900 chrUn 85.827 127 15 3 6882 7006 68152587 68152712 1.820000e-26 132.0
207 TraesCS1B01G223900 chrUn 90.099 101 10 0 6899 6999 286585524 286585624 1.820000e-26 132.0
208 TraesCS1B01G223900 chrUn 90.722 97 9 0 6909 7005 390605553 390605457 6.560000e-26 130.0
209 TraesCS1B01G223900 chrUn 90.217 92 9 0 1087 1178 466690416 466690507 3.950000e-23 121.0
210 TraesCS1B01G223900 chrUn 81.203 133 21 3 1085 1215 268618476 268618606 3.980000e-18 104.0
211 TraesCS1B01G223900 chrUn 77.536 138 24 5 7837 7971 42085015 42085148 8.670000e-10 76.8
212 TraesCS1B01G223900 chrUn 93.333 45 1 1 798 842 108999121 108999079 1.880000e-06 65.8
213 TraesCS1B01G223900 chr5D 83.136 1524 221 20 5504 7002 410290409 410288897 0.000000e+00 1358.0
214 TraesCS1B01G223900 chr5D 87.070 843 99 6 6168 7005 237461206 237462043 0.000000e+00 944.0
215 TraesCS1B01G223900 chr5D 79.521 835 144 20 6180 7004 339650517 339649700 3.260000e-158 569.0
216 TraesCS1B01G223900 chr5D 84.534 472 61 4 1 460 472267147 472266676 2.650000e-124 457.0
217 TraesCS1B01G223900 chr5D 91.928 223 18 0 1 223 504619184 504619406 6.070000e-81 313.0
218 TraesCS1B01G223900 chr5D 79.691 453 66 14 401 843 128552934 128553370 3.650000e-78 303.0
219 TraesCS1B01G223900 chr5D 90.179 224 19 3 7836 8058 382082672 382082451 1.020000e-73 289.0
220 TraesCS1B01G223900 chr5D 87.892 223 25 2 7837 8058 3785388 3785167 2.230000e-65 261.0
221 TraesCS1B01G223900 chr5D 89.764 127 11 2 6877 7002 302375609 302375484 2.330000e-35 161.0
222 TraesCS1B01G223900 chr5D 87.970 133 10 5 6874 7004 50978041 50978169 1.400000e-32 152.0
223 TraesCS1B01G223900 chr5D 80.000 220 31 7 206 415 504666662 504666878 5.040000e-32 150.0
224 TraesCS1B01G223900 chr5D 84.667 150 20 3 6855 7003 411823492 411823639 6.520000e-31 147.0
225 TraesCS1B01G223900 chr5D 79.545 220 32 7 206 415 504689619 504689835 2.340000e-30 145.0
226 TraesCS1B01G223900 chr5D 79.091 220 33 7 206 415 504620809 504621025 1.090000e-28 139.0
227 TraesCS1B01G223900 chr5D 79.091 220 33 8 206 415 504643771 504643987 1.090000e-28 139.0
228 TraesCS1B01G223900 chr1A 91.054 939 83 1 4480 5417 485215565 485214627 0.000000e+00 1267.0
229 TraesCS1B01G223900 chr1A 80.493 1461 250 25 5504 6948 63055617 63057058 0.000000e+00 1086.0
230 TraesCS1B01G223900 chr1A 90.664 557 49 3 4801 5356 372396247 372395693 0.000000e+00 737.0
231 TraesCS1B01G223900 chr1A 90.426 470 40 4 7368 7833 372317278 372316810 1.490000e-171 614.0
232 TraesCS1B01G223900 chr1A 80.719 612 70 18 1 576 41149317 41149916 4.470000e-117 433.0
233 TraesCS1B01G223900 chr1A 88.146 329 39 0 4480 4808 372464735 372464407 7.580000e-105 392.0
234 TraesCS1B01G223900 chr1A 82.471 348 46 8 500 843 291416175 291415839 2.840000e-74 291.0
235 TraesCS1B01G223900 chr1A 87.805 246 30 0 840 1085 372464978 372464733 1.020000e-73 289.0
236 TraesCS1B01G223900 chr1A 89.238 223 21 3 7837 8058 482775786 482776006 7.970000e-70 276.0
237 TraesCS1B01G223900 chr1A 88.722 133 12 3 6877 7007 3612064 3611933 8.370000e-35 159.0
238 TraesCS1B01G223900 chr1A 84.106 151 21 3 6855 7003 496056295 496056444 8.430000e-30 143.0
239 TraesCS1B01G223900 chr1A 81.319 91 10 5 419 505 291444608 291444521 5.220000e-07 67.6
240 TraesCS1B01G223900 chr4D 83.333 870 101 15 1 840 127169627 127170482 0.000000e+00 763.0
241 TraesCS1B01G223900 chr4D 87.793 426 40 11 1086 1506 454269938 454269520 9.400000e-134 488.0
242 TraesCS1B01G223900 chr4D 90.541 370 26 8 1086 1451 399362163 399362527 1.570000e-131 481.0
243 TraesCS1B01G223900 chr4D 85.321 436 57 7 4 434 508595145 508594712 2.060000e-120 444.0
244 TraesCS1B01G223900 chr4D 89.362 329 20 13 1519 1841 479824117 479824436 4.530000e-107 399.0
245 TraesCS1B01G223900 chr4D 91.065 291 23 3 1079 1366 157618807 157618517 2.730000e-104 390.0
246 TraesCS1B01G223900 chr4D 87.421 318 29 10 1614 1922 399363145 399363460 9.950000e-94 355.0
247 TraesCS1B01G223900 chr4D 81.333 450 58 12 1 435 23338998 23339436 7.740000e-90 342.0
248 TraesCS1B01G223900 chr4D 91.429 245 15 5 1609 1847 454269000 454268756 1.680000e-86 331.0
249 TraesCS1B01G223900 chr4D 89.381 226 18 6 7836 8058 396744609 396744387 6.160000e-71 279.0
250 TraesCS1B01G223900 chr4D 89.286 224 21 3 7836 8058 19346469 19346690 2.210000e-70 278.0
251 TraesCS1B01G223900 chr4D 90.431 209 18 2 7851 8058 208557136 208556929 2.870000e-69 274.0
252 TraesCS1B01G223900 chr4D 84.127 189 19 8 663 843 24114166 24114351 1.080000e-38 172.0
253 TraesCS1B01G223900 chr4D 91.429 105 7 2 6901 7004 379337312 379337209 8.430000e-30 143.0
254 TraesCS1B01G223900 chr4D 87.097 124 13 3 6882 7003 51917180 51917302 3.920000e-28 137.0
255 TraesCS1B01G223900 chr4D 87.097 124 13 3 6882 7003 75795412 75795290 3.920000e-28 137.0
256 TraesCS1B01G223900 chr5A 88.451 381 34 4 1 371 368182716 368183096 1.230000e-122 451.0
257 TraesCS1B01G223900 chr5A 85.867 375 44 5 472 842 368183258 368183627 2.730000e-104 390.0
258 TraesCS1B01G223900 chr5A 79.412 170 22 6 4323 4479 696695404 696695235 3.080000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G223900 chr1B 402040850 402048907 8057 True 14881.000000 14881 100.000000 1 8058 1 chr1B.!!$R1 8057
1 TraesCS1B01G223900 chr1B 643253023 643254537 1514 False 1644.000000 1644 86.438000 5502 7003 1 chr1B.!!$F2 1501
2 TraesCS1B01G223900 chr1B 15486659 15487480 821 False 1262.000000 1262 94.337000 3605 4430 1 chr1B.!!$F1 825
3 TraesCS1B01G223900 chr1B 677031887 677033369 1482 False 1022.000000 1022 79.367000 5504 7004 1 chr1B.!!$F4 1500
4 TraesCS1B01G223900 chr1B 517506852 517508027 1175 True 542.000000 1249 91.651667 971 7157 3 chr1B.!!$R3 6186
5 TraesCS1B01G223900 chr2A 235636737 235639322 2585 False 3397.000000 3397 90.825000 1086 3606 1 chr2A.!!$F3 2520
6 TraesCS1B01G223900 chr2A 651798431 651799938 1507 True 2503.000000 2503 96.627000 5504 7012 1 chr2A.!!$R3 1508
7 TraesCS1B01G223900 chr2A 43827519 43829509 1990 False 2222.000000 2222 87.229000 1635 3604 1 chr2A.!!$F2 1969
8 TraesCS1B01G223900 chr2A 4900563 4901670 1107 True 1895.000000 1895 97.563000 5902 7008 1 chr2A.!!$R1 1106
9 TraesCS1B01G223900 chr2A 459102724 459103477 753 True 1005.000000 1005 91.126000 2870 3606 1 chr2A.!!$R2 736
10 TraesCS1B01G223900 chr6D 387862508 387864923 2415 False 1828.000000 3112 92.313000 1086 3606 2 chr6D.!!$F17 2520
11 TraesCS1B01G223900 chr6D 283238618 283241606 2988 True 1747.500000 2889 91.627000 1086 3606 2 chr6D.!!$R11 2520
12 TraesCS1B01G223900 chr6D 306432819 306433701 882 False 1297.000000 1297 93.356000 3605 4480 1 chr6D.!!$F9 875
13 TraesCS1B01G223900 chr6D 218309279 218310892 1613 False 946.000000 1483 87.906000 1085 2718 2 chr6D.!!$F16 1633
14 TraesCS1B01G223900 chr6D 119818463 119819323 860 True 732.000000 732 82.648000 1 843 1 chr6D.!!$R3 842
15 TraesCS1B01G223900 chr6D 413628891 413629444 553 False 704.000000 704 89.267000 1564 2149 1 chr6D.!!$F11 585
16 TraesCS1B01G223900 chr6D 426548805 426549574 769 False 628.000000 628 82.331000 1086 1841 1 chr6D.!!$F12 755
17 TraesCS1B01G223900 chr6D 392579712 392580578 866 False 501.000000 501 77.854000 1 839 1 chr6D.!!$F10 838
18 TraesCS1B01G223900 chr7D 259648539 259651038 2499 False 1782.500000 3020 91.285500 1086 3606 2 chr7D.!!$F10 2520
19 TraesCS1B01G223900 chr7D 167029030 167029912 882 False 1293.000000 1293 93.251000 3605 4481 1 chr7D.!!$F4 876
20 TraesCS1B01G223900 chr7D 16228213 16229034 821 False 1280.000000 1280 94.686000 3606 4433 1 chr7D.!!$F1 827
21 TraesCS1B01G223900 chr7D 267768753 267769637 884 False 1277.000000 1277 92.929000 3605 4479 1 chr7D.!!$F6 874
22 TraesCS1B01G223900 chr7D 64183008 64183885 877 True 1275.000000 1275 93.010000 3605 4479 1 chr7D.!!$R3 874
23 TraesCS1B01G223900 chr7D 223095117 223095994 877 True 824.000000 824 84.371000 1 842 1 chr7D.!!$R6 841
24 TraesCS1B01G223900 chr7D 222136212 222137067 855 False 680.000000 680 81.609000 1 840 1 chr7D.!!$F5 839
25 TraesCS1B01G223900 chr7D 552310422 552311293 871 True 634.000000 634 80.432000 1 847 1 chr7D.!!$R7 846
26 TraesCS1B01G223900 chr7A 602001126 602003095 1969 True 2881.000000 2881 93.029000 1623 3606 1 chr7A.!!$R2 1983
27 TraesCS1B01G223900 chr7A 59430575 59432075 1500 False 2556.000000 2556 97.403000 5504 7004 1 chr7A.!!$F1 1500
28 TraesCS1B01G223900 chr7A 704614038 704615533 1495 True 2555.000000 2555 97.467000 5504 7002 1 chr7A.!!$R3 1498
29 TraesCS1B01G223900 chr7A 184347406 184348033 627 False 662.000000 662 85.714000 5504 6131 1 chr7A.!!$F3 627
30 TraesCS1B01G223900 chr1D 34551391 34554195 2804 False 1703.500000 2867 92.151000 1086 3606 2 chr1D.!!$F6 2520
31 TraesCS1B01G223900 chr1D 210555054 210556294 1240 False 1513.000000 1513 88.759000 1457 2718 1 chr1D.!!$F2 1261
32 TraesCS1B01G223900 chr1D 298605014 298607725 2711 True 1005.750000 1434 93.923750 1 7833 4 chr1D.!!$R9 7832
33 TraesCS1B01G223900 chr1D 112096332 112097275 943 True 785.000000 785 82.000000 6070 7002 1 chr1D.!!$R2 932
34 TraesCS1B01G223900 chr1D 385051853 385053035 1182 True 546.000000 1256 91.941667 971 7157 3 chr1D.!!$R10 6186
35 TraesCS1B01G223900 chr1D 394479927 394480796 869 False 544.000000 544 78.894000 3 843 1 chr1D.!!$F3 840
36 TraesCS1B01G223900 chr2D 423004197 423005444 1247 False 1724.000000 1724 91.733000 1780 3021 1 chr2D.!!$F3 1241
37 TraesCS1B01G223900 chr2D 83213738 83216760 3022 True 1644.000000 2706 91.992000 1087 3606 2 chr2D.!!$R6 2519
38 TraesCS1B01G223900 chr2D 94383480 94384714 1234 False 1522.000000 1522 88.862000 5752 7005 1 chr2D.!!$F1 1253
39 TraesCS1B01G223900 chr2D 263798665 263799545 880 True 1301.000000 1301 93.468000 3605 4480 1 chr2D.!!$R3 875
40 TraesCS1B01G223900 chr2D 423023891 423024771 880 False 1295.000000 1295 93.348000 3605 4479 1 chr2D.!!$F4 874
41 TraesCS1B01G223900 chr2D 147707714 147708595 881 True 1251.000000 1251 92.161000 3588 4479 1 chr2D.!!$R2 891
42 TraesCS1B01G223900 chr2D 338837118 338837934 816 False 715.000000 715 82.646000 6168 6983 1 chr2D.!!$F2 815
43 TraesCS1B01G223900 chr2D 119798866 119799743 877 True 712.000000 712 82.106000 1 841 1 chr2D.!!$R1 840
44 TraesCS1B01G223900 chr2D 509206135 509206794 659 True 636.000000 636 84.970000 1086 1719 1 chr2D.!!$R5 633
45 TraesCS1B01G223900 chr3B 503979020 503980522 1502 True 2531.000000 2531 97.073000 5504 7005 1 chr3B.!!$R5 1501
46 TraesCS1B01G223900 chr3B 772480657 772482329 1672 True 2145.000000 2145 90.000000 1943 3606 1 chr3B.!!$R6 1663
47 TraesCS1B01G223900 chr3B 830316326 830317076 750 True 957.000000 957 90.040000 2870 3604 1 chr3B.!!$R7 734
48 TraesCS1B01G223900 chr3B 15883739 15884489 750 True 941.000000 941 89.641000 2870 3604 1 chr3B.!!$R2 734
49 TraesCS1B01G223900 chr3B 187834194 187834708 514 True 702.000000 702 91.860000 3107 3604 1 chr3B.!!$R4 497
50 TraesCS1B01G223900 chr6A 45864676 45866313 1637 False 1810.000000 1810 86.972000 1082 2718 1 chr6A.!!$F1 1636
51 TraesCS1B01G223900 chr6A 187488533 187491284 2751 False 1492.500000 2436 89.660000 1086 3606 2 chr6A.!!$F4 2520
52 TraesCS1B01G223900 chr6A 555937106 555937960 854 True 785.000000 785 83.662000 1 842 1 chr6A.!!$R5 841
53 TraesCS1B01G223900 chr4A 258507878 258509750 1872 True 2412.000000 2412 90.058000 1734 3606 1 chr4A.!!$R2 1872
54 TraesCS1B01G223900 chr4A 270202926 270204427 1501 True 1140.000000 1140 80.630000 5504 7005 1 chr4A.!!$R3 1501
55 TraesCS1B01G223900 chr4A 483384262 483385123 861 True 643.000000 643 80.600000 1 842 1 chr4A.!!$R4 841
56 TraesCS1B01G223900 chr4A 737081637 737082582 945 False 614.000000 614 78.734000 6054 7001 1 chr4A.!!$F2 947
57 TraesCS1B01G223900 chr6B 41561624 41563106 1482 True 2357.000000 2357 95.206000 5504 7004 1 chr6B.!!$R1 1500
58 TraesCS1B01G223900 chr6B 50462377 50463886 1509 False 1661.000000 1661 86.684000 5502 7001 1 chr6B.!!$F1 1499
59 TraesCS1B01G223900 chr6B 211812333 211813200 867 True 749.000000 749 83.051000 1 843 1 chr6B.!!$R2 842
60 TraesCS1B01G223900 chr3D 431834396 431835878 1482 True 1941.000000 1941 90.316000 5521 7003 1 chr3D.!!$R3 1482
61 TraesCS1B01G223900 chr3D 18093354 18095005 1651 True 1914.000000 1914 87.955000 1086 2718 1 chr3D.!!$R1 1632
62 TraesCS1B01G223900 chr3D 485223111 485223927 816 True 1271.000000 1271 94.572000 3605 4433 1 chr3D.!!$R4 828
63 TraesCS1B01G223900 chr3D 320631956 320632801 845 True 568.000000 568 79.354000 1 842 1 chr3D.!!$R2 841
64 TraesCS1B01G223900 chr7B 720348716 720349768 1052 False 1851.000000 1851 98.387000 5950 7003 1 chr7B.!!$F5 1053
65 TraesCS1B01G223900 chr7B 641062445 641063921 1476 True 1779.000000 1779 88.377000 5509 7002 1 chr7B.!!$R4 1493
66 TraesCS1B01G223900 chr7B 158924362 158925874 1512 True 1687.000000 1687 86.948000 5505 7005 1 chr7B.!!$R1 1500
67 TraesCS1B01G223900 chr7B 406097868 406098546 678 True 795.000000 795 87.960000 1446 2137 1 chr7B.!!$R3 691
68 TraesCS1B01G223900 chr4B 139143333 139144849 1516 False 1687.000000 1687 86.917000 5502 7005 1 chr4B.!!$F1 1503
69 TraesCS1B01G223900 chr4B 606571493 606572196 703 True 719.000000 719 85.431000 5964 6655 1 chr4B.!!$R4 691
70 TraesCS1B01G223900 chr4B 659528021 659528593 572 False 276.500000 357 95.132500 5502 5890 2 chr4B.!!$F4 388
71 TraesCS1B01G223900 chr5B 308379921 308381440 1519 False 1580.000000 1580 85.917000 1220 2718 1 chr5B.!!$F4 1498
72 TraesCS1B01G223900 chr5B 492143356 492143891 535 True 481.000000 481 83.026000 6472 7008 1 chr5B.!!$R1 536
73 TraesCS1B01G223900 chr2B 8908541 8910054 1513 False 1574.000000 1574 85.872000 1220 2718 1 chr2B.!!$F1 1498
74 TraesCS1B01G223900 chr2B 332806760 332807998 1238 True 1452.000000 1452 88.041000 1474 2718 1 chr2B.!!$R1 1244
75 TraesCS1B01G223900 chr2B 781965480 781966673 1193 True 1245.000000 1245 85.657000 1457 2684 1 chr2B.!!$R3 1227
76 TraesCS1B01G223900 chrUn 60556719 60558668 1949 False 795.500000 1430 91.438000 1086 2718 2 chrUn.!!$F13 1632
77 TraesCS1B01G223900 chrUn 96251968 96253284 1316 True 657.333333 1393 90.517000 1592 2846 3 chrUn.!!$R11 1254
78 TraesCS1B01G223900 chrUn 95197643 95198375 732 False 520.000000 520 80.270000 1 706 1 chrUn.!!$F5 705
79 TraesCS1B01G223900 chr5D 410288897 410290409 1512 True 1358.000000 1358 83.136000 5504 7002 1 chr5D.!!$R5 1498
80 TraesCS1B01G223900 chr5D 237461206 237462043 837 False 944.000000 944 87.070000 6168 7005 1 chr5D.!!$F3 837
81 TraesCS1B01G223900 chr5D 339649700 339650517 817 True 569.000000 569 79.521000 6180 7004 1 chr5D.!!$R3 824
82 TraesCS1B01G223900 chr5D 504619184 504621025 1841 False 226.000000 313 85.509500 1 415 2 chr5D.!!$F8 414
83 TraesCS1B01G223900 chr1A 485214627 485215565 938 True 1267.000000 1267 91.054000 4480 5417 1 chr1A.!!$R6 937
84 TraesCS1B01G223900 chr1A 63055617 63057058 1441 False 1086.000000 1086 80.493000 5504 6948 1 chr1A.!!$F2 1444
85 TraesCS1B01G223900 chr1A 372395693 372396247 554 True 737.000000 737 90.664000 4801 5356 1 chr1A.!!$R5 555
86 TraesCS1B01G223900 chr1A 41149317 41149916 599 False 433.000000 433 80.719000 1 576 1 chr1A.!!$F1 575
87 TraesCS1B01G223900 chr1A 372464407 372464978 571 True 340.500000 392 87.975500 840 4808 2 chr1A.!!$R7 3968
88 TraesCS1B01G223900 chr4D 127169627 127170482 855 False 763.000000 763 83.333000 1 840 1 chr4D.!!$F5 839
89 TraesCS1B01G223900 chr4D 399362163 399363460 1297 False 418.000000 481 88.981000 1086 1922 2 chr4D.!!$F7 836
90 TraesCS1B01G223900 chr4D 454268756 454269938 1182 True 409.500000 488 89.611000 1086 1847 2 chr4D.!!$R7 761
91 TraesCS1B01G223900 chr5A 368182716 368183627 911 False 420.500000 451 87.159000 1 842 2 chr5A.!!$F1 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 2509 0.035739 TGTTGCCCTAAACCTCGACC 59.964 55.000 0.00 0.00 0.00 4.79 F
1357 2960 0.108138 CGCTACTGCTAAGCCCACTT 60.108 55.000 0.00 0.00 40.07 3.16 F
1455 3176 0.465642 CTTCCTTAATCCCCCACGCC 60.466 60.000 0.00 0.00 0.00 5.68 F
2313 5321 1.991167 CCGGGCTGGTACTGGGTTA 60.991 63.158 3.48 0.00 0.00 2.85 F
3342 6417 1.138859 TGATCCTGACATCGGCGAAAT 59.861 47.619 15.93 4.46 0.00 2.17 F
4685 7811 0.736636 TAGCACCATGGTCTACGACG 59.263 55.000 16.53 2.67 32.65 5.12 F
5436 8563 0.108804 ACGGACGAATGAGCGTTGAT 60.109 50.000 0.00 0.00 45.72 2.57 F
5437 8564 0.298707 CGGACGAATGAGCGTTGATG 59.701 55.000 0.00 0.00 45.72 3.07 F
5641 8795 0.552367 TTGGACCAGGGATGGGTGAT 60.552 55.000 0.00 0.00 39.19 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2526 5537 0.107361 TCGTAGCTCCGGTGAGATCA 60.107 55.000 7.92 0.0 41.42 2.92 R
2899 5972 1.092348 TCGCAGTACTCGCACATAGT 58.908 50.000 14.77 0.0 0.00 2.12 R
2960 6033 1.434622 CTTGATGCTGAAGCGCCGAT 61.435 55.000 2.29 0.0 45.83 4.18 R
4272 7386 0.798009 CCGCGCCACTGCTAAAATTG 60.798 55.000 0.00 0.0 34.43 2.32 R
4804 7930 0.099968 CCTGAAATGACTGCCGCATG 59.900 55.000 0.00 0.0 0.00 4.06 R
5492 8619 0.250252 TGCTGCAGATGGTTTGACGA 60.250 50.000 20.43 0.0 0.00 4.20 R
6620 9991 1.178276 GTCCAGACTGATCCGTCACT 58.822 55.000 18.10 0.0 36.38 3.41 R
7013 10394 3.059884 ACGTGACATGCTTAGACACTTG 58.940 45.455 0.00 0.0 31.17 3.16 R
7563 10946 2.489329 TGAGCAGCATTTTTAGAGCCAC 59.511 45.455 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 0.179108 GCGCATTCGGTACCTTCTCT 60.179 55.000 10.90 0.00 35.95 3.10
135 137 6.942005 TCTTGCATCAACATATATTTCCCGAT 59.058 34.615 0.00 0.00 0.00 4.18
164 170 0.391130 CCGAGGAATGCAAAGACGGA 60.391 55.000 14.32 0.00 41.09 4.69
374 1829 1.484653 ACCAACTATGCATACCGCTCA 59.515 47.619 1.16 0.00 43.06 4.26
380 1835 2.042686 ATGCATACCGCTCAACACAT 57.957 45.000 0.00 0.00 43.06 3.21
381 1836 1.368641 TGCATACCGCTCAACACATC 58.631 50.000 0.00 0.00 43.06 3.06
399 1855 5.885912 ACACATCCACAACTAAAAACTCACT 59.114 36.000 0.00 0.00 0.00 3.41
505 2083 3.162154 GGAAGAGGGTAGGGGCGG 61.162 72.222 0.00 0.00 0.00 6.13
548 2126 2.300433 CAGATCATTTGGCCGGAATCA 58.700 47.619 5.05 0.00 0.00 2.57
634 2215 1.146774 TGAAATGTCCCTCCTGCCAAA 59.853 47.619 0.00 0.00 0.00 3.28
652 2244 0.611714 AACGCTTTCCTGGGATACGT 59.388 50.000 0.00 0.00 37.60 3.57
712 2304 2.833943 GGTTGGGGATGAGATTTTGCTT 59.166 45.455 0.00 0.00 0.00 3.91
721 2313 1.026718 AGATTTTGCTTCGCCCCTCG 61.027 55.000 0.00 0.00 40.15 4.63
791 2387 1.024579 CGCTGACCCGTATTTTGGCT 61.025 55.000 0.00 0.00 0.00 4.75
863 2460 1.303309 CCCCTTCAGATCGATTGCAC 58.697 55.000 0.00 0.00 0.00 4.57
866 2463 1.667724 CCTTCAGATCGATTGCACACC 59.332 52.381 0.00 0.00 0.00 4.16
912 2509 0.035739 TGTTGCCCTAAACCTCGACC 59.964 55.000 0.00 0.00 0.00 4.79
937 2538 4.201685 CGACCAAAGTTGAGCCTTTATACG 60.202 45.833 0.00 0.00 33.00 3.06
938 2539 4.901868 ACCAAAGTTGAGCCTTTATACGA 58.098 39.130 0.00 0.00 33.00 3.43
939 2540 5.310451 ACCAAAGTTGAGCCTTTATACGAA 58.690 37.500 0.00 0.00 33.00 3.85
940 2541 5.180680 ACCAAAGTTGAGCCTTTATACGAAC 59.819 40.000 0.00 0.00 33.00 3.95
950 2551 3.615496 CCTTTATACGAACACAAGACCCG 59.385 47.826 0.00 0.00 0.00 5.28
1009 2610 0.621862 GGGAGGAGGGATGTCCAAGT 60.622 60.000 0.86 0.00 39.34 3.16
1041 2642 0.546027 AGGTAAACTACAGGGGCCGT 60.546 55.000 0.00 0.00 0.00 5.68
1043 2644 0.322648 GTAAACTACAGGGGCCGTGT 59.677 55.000 31.84 31.84 0.00 4.49
1357 2960 0.108138 CGCTACTGCTAAGCCCACTT 60.108 55.000 0.00 0.00 40.07 3.16
1358 2961 1.136305 CGCTACTGCTAAGCCCACTTA 59.864 52.381 0.00 0.00 37.33 2.24
1364 2967 1.205055 GCTAAGCCCACTTACTCCCT 58.795 55.000 0.00 0.00 37.33 4.20
1442 3076 1.417890 CACACTCCACACTCCTTCCTT 59.582 52.381 0.00 0.00 0.00 3.36
1455 3176 0.465642 CTTCCTTAATCCCCCACGCC 60.466 60.000 0.00 0.00 0.00 5.68
1456 3177 2.203153 CCTTAATCCCCCACGCCG 60.203 66.667 0.00 0.00 0.00 6.46
1457 3178 2.203153 CTTAATCCCCCACGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
1458 3179 4.493049 TTAATCCCCCACGCCGGC 62.493 66.667 19.07 19.07 0.00 6.13
1561 3678 4.803908 GCCGGCCCTCCTTCCTTG 62.804 72.222 18.11 0.00 0.00 3.61
1562 3679 4.803908 CCGGCCCTCCTTCCTTGC 62.804 72.222 0.00 0.00 0.00 4.01
1565 3682 4.448976 GCCCTCCTTCCTTGCCCC 62.449 72.222 0.00 0.00 0.00 5.80
1566 3683 3.744155 CCCTCCTTCCTTGCCCCC 61.744 72.222 0.00 0.00 0.00 5.40
1633 4274 2.226013 ACATCCTCTTCCCTCCTTCCTT 60.226 50.000 0.00 0.00 0.00 3.36
2280 5288 2.285969 AGCAGAGGGGCCATGTCT 60.286 61.111 4.39 0.38 0.00 3.41
2313 5321 1.991167 CCGGGCTGGTACTGGGTTA 60.991 63.158 3.48 0.00 0.00 2.85
2429 5437 4.473520 CTTGAGTCCCCCGCGCAT 62.474 66.667 8.75 0.00 0.00 4.73
2430 5438 3.078196 TTGAGTCCCCCGCGCATA 61.078 61.111 8.75 0.00 0.00 3.14
2526 5537 6.962182 TCCAATACCTGACAGATTCTTCAAT 58.038 36.000 3.32 0.00 0.00 2.57
2559 5570 4.262036 GGAGCTACGATCATGTGATGGTTA 60.262 45.833 14.39 2.90 39.90 2.85
2899 5972 4.253685 GTCTGACGATGAAAGGGAATTCA 58.746 43.478 7.93 0.00 43.03 2.57
2960 6033 4.686396 CGATAGTCCTCACCTGGTAGAAGA 60.686 50.000 0.00 0.00 0.00 2.87
3141 6216 3.068732 CGCTATGTCTTGGAGAAGATGGA 59.931 47.826 0.00 0.00 40.40 3.41
3172 6247 3.411446 TCATGAAAGCACGGAGACAAAT 58.589 40.909 0.00 0.00 0.00 2.32
3313 6388 2.912956 TGAGGGTATGCTTCTCACCTTT 59.087 45.455 4.07 0.00 33.21 3.11
3336 6411 1.482182 TCTTGGTGATCCTGACATCGG 59.518 52.381 0.00 0.00 34.23 4.18
3342 6417 1.138859 TGATCCTGACATCGGCGAAAT 59.861 47.619 15.93 4.46 0.00 2.17
3789 6886 2.690497 AGTATCCACATCACTCCTGTCG 59.310 50.000 0.00 0.00 0.00 4.35
3931 7028 7.473735 AGATGATCTCCGCTCTTTATTATGA 57.526 36.000 0.00 0.00 0.00 2.15
4078 7187 9.322773 CTACAATGTGTTAGAGTTGATGATGAT 57.677 33.333 0.00 0.00 0.00 2.45
4147 7260 5.747565 GTCTCATTGACGAACATTGTTTGA 58.252 37.500 21.08 10.54 35.81 2.69
4307 7421 1.405821 CGCGGGCCAAAATATTACCAA 59.594 47.619 4.39 0.00 0.00 3.67
4340 7454 2.609747 ACCAGTAGTGCTTTCCAGAGA 58.390 47.619 0.00 0.00 0.00 3.10
4371 7485 9.781633 CTACTAGTATCTGAACATACCAGTAGT 57.218 37.037 2.33 6.95 41.68 2.73
4398 7512 4.113354 GACTAAACAAGCGCTACTGCTAT 58.887 43.478 12.05 0.00 46.60 2.97
4412 7526 7.085116 CGCTACTGCTATAAAATAGCTGTACT 58.915 38.462 23.54 11.09 46.16 2.73
4621 7747 6.636454 TCACCTACTTATCCCATGAACTTT 57.364 37.500 0.00 0.00 0.00 2.66
4685 7811 0.736636 TAGCACCATGGTCTACGACG 59.263 55.000 16.53 2.67 32.65 5.12
4804 7930 5.874810 TGTGTTGAAGTATAGCATCAAGGAC 59.125 40.000 0.00 0.00 35.76 3.85
4873 7999 3.512724 CCCATTCTTCAAATCCAAGCACT 59.487 43.478 0.00 0.00 0.00 4.40
4899 8025 2.193536 GTTGGACAAGCGTGCCCTT 61.194 57.895 6.54 0.00 31.21 3.95
4904 8030 1.452145 GACAAGCGTGCCCTTTCCAA 61.452 55.000 0.00 0.00 0.00 3.53
4962 8088 1.925285 ATGCACCCGGATGGACACAT 61.925 55.000 0.73 0.00 40.85 3.21
5001 8127 2.407616 CAGGCGCGATCTACGTCA 59.592 61.111 12.10 0.00 44.60 4.35
5026 8152 0.764890 TCTCCTTTGACACCAGGTGG 59.235 55.000 24.13 4.72 37.94 4.61
5309 8436 4.225942 AGTGGAGTTAGATGATGCCTTTGA 59.774 41.667 0.00 0.00 0.00 2.69
5331 8458 4.486125 TGACTGTAATGGCTTCATGCTA 57.514 40.909 0.00 0.00 42.39 3.49
5412 8539 2.364632 CGCACCACCAAATCCTATCAA 58.635 47.619 0.00 0.00 0.00 2.57
5413 8540 2.355756 CGCACCACCAAATCCTATCAAG 59.644 50.000 0.00 0.00 0.00 3.02
5414 8541 3.356290 GCACCACCAAATCCTATCAAGT 58.644 45.455 0.00 0.00 0.00 3.16
5415 8542 3.129287 GCACCACCAAATCCTATCAAGTG 59.871 47.826 0.00 0.00 0.00 3.16
5416 8543 4.335416 CACCACCAAATCCTATCAAGTGT 58.665 43.478 0.00 0.00 0.00 3.55
5417 8544 5.496556 CACCACCAAATCCTATCAAGTGTA 58.503 41.667 0.00 0.00 0.00 2.90
5418 8545 5.354234 CACCACCAAATCCTATCAAGTGTAC 59.646 44.000 0.00 0.00 0.00 2.90
5419 8546 4.570772 CCACCAAATCCTATCAAGTGTACG 59.429 45.833 0.00 0.00 0.00 3.67
5420 8547 4.570772 CACCAAATCCTATCAAGTGTACGG 59.429 45.833 0.00 0.00 0.00 4.02
5421 8548 4.468510 ACCAAATCCTATCAAGTGTACGGA 59.531 41.667 0.00 0.00 0.00 4.69
5422 8549 4.809426 CCAAATCCTATCAAGTGTACGGAC 59.191 45.833 0.00 0.00 0.00 4.79
5423 8550 3.984508 ATCCTATCAAGTGTACGGACG 57.015 47.619 0.00 0.00 0.00 4.79
5424 8551 2.989909 TCCTATCAAGTGTACGGACGA 58.010 47.619 0.00 0.00 0.00 4.20
5425 8552 3.346315 TCCTATCAAGTGTACGGACGAA 58.654 45.455 0.00 0.00 0.00 3.85
5426 8553 3.949754 TCCTATCAAGTGTACGGACGAAT 59.050 43.478 0.00 0.00 0.00 3.34
5427 8554 4.042398 CCTATCAAGTGTACGGACGAATG 58.958 47.826 0.00 0.00 0.00 2.67
5428 8555 3.861276 ATCAAGTGTACGGACGAATGA 57.139 42.857 0.00 0.00 0.00 2.57
5429 8556 3.211803 TCAAGTGTACGGACGAATGAG 57.788 47.619 0.00 0.00 0.00 2.90
5430 8557 1.654105 CAAGTGTACGGACGAATGAGC 59.346 52.381 0.00 0.00 0.00 4.26
5431 8558 0.179171 AGTGTACGGACGAATGAGCG 60.179 55.000 0.00 0.00 37.29 5.03
5433 8560 0.241749 TGTACGGACGAATGAGCGTT 59.758 50.000 0.00 0.00 45.72 4.84
5434 8561 0.638746 GTACGGACGAATGAGCGTTG 59.361 55.000 0.00 0.00 45.72 4.10
5435 8562 0.522626 TACGGACGAATGAGCGTTGA 59.477 50.000 0.00 0.00 45.72 3.18
5436 8563 0.108804 ACGGACGAATGAGCGTTGAT 60.109 50.000 0.00 0.00 45.72 2.57
5437 8564 0.298707 CGGACGAATGAGCGTTGATG 59.701 55.000 0.00 0.00 45.72 3.07
5438 8565 1.640428 GGACGAATGAGCGTTGATGA 58.360 50.000 0.00 0.00 45.72 2.92
5439 8566 2.205074 GGACGAATGAGCGTTGATGAT 58.795 47.619 0.00 0.00 45.72 2.45
5440 8567 2.033407 GGACGAATGAGCGTTGATGATG 60.033 50.000 0.00 0.00 45.72 3.07
5441 8568 2.860136 GACGAATGAGCGTTGATGATGA 59.140 45.455 0.00 0.00 45.72 2.92
5442 8569 2.604914 ACGAATGAGCGTTGATGATGAC 59.395 45.455 0.00 0.00 42.71 3.06
5443 8570 2.604462 CGAATGAGCGTTGATGATGACA 59.396 45.455 0.00 0.00 0.00 3.58
5444 8571 3.062504 CGAATGAGCGTTGATGATGACAA 59.937 43.478 0.00 0.00 0.00 3.18
5445 8572 4.337763 GAATGAGCGTTGATGATGACAAC 58.662 43.478 0.00 0.00 42.54 3.32
5452 8579 4.346734 GTTGATGATGACAACGCTCATT 57.653 40.909 0.00 0.00 38.23 2.57
5453 8580 4.726416 GTTGATGATGACAACGCTCATTT 58.274 39.130 0.00 0.00 38.23 2.32
5454 8581 5.868257 GTTGATGATGACAACGCTCATTTA 58.132 37.500 0.00 0.00 38.23 1.40
5455 8582 5.469373 TGATGATGACAACGCTCATTTAC 57.531 39.130 0.00 0.00 30.62 2.01
5456 8583 4.332543 TGATGATGACAACGCTCATTTACC 59.667 41.667 0.00 0.00 30.62 2.85
5457 8584 3.669536 TGATGACAACGCTCATTTACCA 58.330 40.909 0.00 0.00 30.62 3.25
5458 8585 3.684305 TGATGACAACGCTCATTTACCAG 59.316 43.478 0.00 0.00 30.62 4.00
5459 8586 3.120321 TGACAACGCTCATTTACCAGT 57.880 42.857 0.00 0.00 0.00 4.00
5460 8587 4.260139 TGACAACGCTCATTTACCAGTA 57.740 40.909 0.00 0.00 0.00 2.74
5461 8588 4.242475 TGACAACGCTCATTTACCAGTAG 58.758 43.478 0.00 0.00 0.00 2.57
5462 8589 4.243270 GACAACGCTCATTTACCAGTAGT 58.757 43.478 0.00 0.00 0.00 2.73
5463 8590 3.994392 ACAACGCTCATTTACCAGTAGTG 59.006 43.478 0.00 0.00 0.00 2.74
5464 8591 2.618053 ACGCTCATTTACCAGTAGTGC 58.382 47.619 0.00 0.00 0.00 4.40
5465 8592 2.028476 ACGCTCATTTACCAGTAGTGCA 60.028 45.455 0.00 0.00 0.00 4.57
5466 8593 3.198068 CGCTCATTTACCAGTAGTGCAT 58.802 45.455 0.00 0.00 0.00 3.96
5467 8594 3.623060 CGCTCATTTACCAGTAGTGCATT 59.377 43.478 0.00 0.00 0.00 3.56
5468 8595 4.260375 CGCTCATTTACCAGTAGTGCATTC 60.260 45.833 0.00 0.00 0.00 2.67
5469 8596 4.260375 GCTCATTTACCAGTAGTGCATTCG 60.260 45.833 0.00 0.00 0.00 3.34
5470 8597 4.827692 TCATTTACCAGTAGTGCATTCGT 58.172 39.130 0.00 0.00 0.00 3.85
5471 8598 4.868171 TCATTTACCAGTAGTGCATTCGTC 59.132 41.667 0.00 0.00 0.00 4.20
5472 8599 3.945981 TTACCAGTAGTGCATTCGTCA 57.054 42.857 0.00 0.00 0.00 4.35
5473 8600 2.831685 ACCAGTAGTGCATTCGTCAA 57.168 45.000 0.00 0.00 0.00 3.18
5474 8601 3.120321 ACCAGTAGTGCATTCGTCAAA 57.880 42.857 0.00 0.00 0.00 2.69
5475 8602 3.472652 ACCAGTAGTGCATTCGTCAAAA 58.527 40.909 0.00 0.00 0.00 2.44
5476 8603 3.250040 ACCAGTAGTGCATTCGTCAAAAC 59.750 43.478 0.00 0.00 0.00 2.43
5477 8604 3.498397 CCAGTAGTGCATTCGTCAAAACT 59.502 43.478 0.00 0.00 0.00 2.66
5478 8605 4.377431 CCAGTAGTGCATTCGTCAAAACTC 60.377 45.833 0.00 0.00 0.00 3.01
5479 8606 3.746492 AGTAGTGCATTCGTCAAAACTCC 59.254 43.478 0.00 0.00 0.00 3.85
5480 8607 2.571212 AGTGCATTCGTCAAAACTCCA 58.429 42.857 0.00 0.00 0.00 3.86
5481 8608 2.948979 AGTGCATTCGTCAAAACTCCAA 59.051 40.909 0.00 0.00 0.00 3.53
5482 8609 3.569701 AGTGCATTCGTCAAAACTCCAAT 59.430 39.130 0.00 0.00 0.00 3.16
5483 8610 3.914364 GTGCATTCGTCAAAACTCCAATC 59.086 43.478 0.00 0.00 0.00 2.67
5484 8611 3.820467 TGCATTCGTCAAAACTCCAATCT 59.180 39.130 0.00 0.00 0.00 2.40
5485 8612 4.278170 TGCATTCGTCAAAACTCCAATCTT 59.722 37.500 0.00 0.00 0.00 2.40
5486 8613 5.471797 TGCATTCGTCAAAACTCCAATCTTA 59.528 36.000 0.00 0.00 0.00 2.10
5487 8614 6.150976 TGCATTCGTCAAAACTCCAATCTTAT 59.849 34.615 0.00 0.00 0.00 1.73
5488 8615 6.470235 GCATTCGTCAAAACTCCAATCTTATG 59.530 38.462 0.00 0.00 0.00 1.90
5489 8616 5.545658 TCGTCAAAACTCCAATCTTATGC 57.454 39.130 0.00 0.00 0.00 3.14
5490 8617 5.000591 TCGTCAAAACTCCAATCTTATGCA 58.999 37.500 0.00 0.00 0.00 3.96
5491 8618 5.647658 TCGTCAAAACTCCAATCTTATGCAT 59.352 36.000 3.79 3.79 0.00 3.96
5492 8619 6.150976 TCGTCAAAACTCCAATCTTATGCATT 59.849 34.615 3.54 0.00 0.00 3.56
5493 8620 6.470235 CGTCAAAACTCCAATCTTATGCATTC 59.530 38.462 3.54 0.00 0.00 2.67
5494 8621 6.470235 GTCAAAACTCCAATCTTATGCATTCG 59.530 38.462 3.54 0.00 0.00 3.34
5495 8622 6.150976 TCAAAACTCCAATCTTATGCATTCGT 59.849 34.615 3.54 0.00 0.00 3.85
5496 8623 5.741388 AACTCCAATCTTATGCATTCGTC 57.259 39.130 3.54 0.00 0.00 4.20
5497 8624 4.769688 ACTCCAATCTTATGCATTCGTCA 58.230 39.130 3.54 0.00 0.00 4.35
5498 8625 5.185454 ACTCCAATCTTATGCATTCGTCAA 58.815 37.500 3.54 0.00 0.00 3.18
5499 8626 5.647658 ACTCCAATCTTATGCATTCGTCAAA 59.352 36.000 3.54 0.00 0.00 2.69
5500 8627 5.879237 TCCAATCTTATGCATTCGTCAAAC 58.121 37.500 3.54 0.00 0.00 2.93
5641 8795 0.552367 TTGGACCAGGGATGGGTGAT 60.552 55.000 0.00 0.00 39.19 3.06
5707 9045 2.203788 CCGGCCTATCCCTGCCTA 60.204 66.667 0.00 0.00 45.71 3.93
6594 9964 8.534333 TGACAACTACATCAAGAAGTACAATC 57.466 34.615 0.00 0.00 0.00 2.67
6624 9995 9.506018 TCTATGATTTTCTTGACAAATGAGTGA 57.494 29.630 0.00 0.00 0.00 3.41
6955 10334 7.544804 AATTAACTGGGCAATTCTCTTCTTT 57.455 32.000 0.00 0.00 0.00 2.52
7230 10611 1.080705 CCACGACACTCCGGAGTTC 60.081 63.158 34.54 28.58 40.20 3.01
7340 10721 8.506168 ACATATGTGAACTCCGAAAATATGTT 57.494 30.769 7.78 0.00 36.73 2.71
7360 10741 6.801539 TGTTCGAGCACATTTCTCTATTTT 57.198 33.333 0.00 0.00 0.00 1.82
7484 10867 7.216494 TCGATGCCATTGATACTTTCTTATCA 58.784 34.615 0.00 0.00 36.81 2.15
7563 10946 1.687494 GAGTTGCTTGCGGTCGCTAG 61.687 60.000 19.11 19.11 44.50 3.42
7615 10998 3.170490 AATCGGAGAGCGCATCCCC 62.170 63.158 21.82 10.79 43.63 4.81
7669 11052 4.141459 TGGTAGAAACACATTGTACACCCA 60.141 41.667 0.00 0.00 39.04 4.51
7833 11223 2.541346 GAGCAAGCCAAGCAAAAACTTC 59.459 45.455 0.00 0.00 0.00 3.01
7834 11224 2.169144 AGCAAGCCAAGCAAAAACTTCT 59.831 40.909 0.00 0.00 0.00 2.85
7835 11225 2.286025 GCAAGCCAAGCAAAAACTTCTG 59.714 45.455 0.00 0.00 0.00 3.02
7836 11226 3.784338 CAAGCCAAGCAAAAACTTCTGA 58.216 40.909 0.00 0.00 0.00 3.27
7837 11227 4.183101 CAAGCCAAGCAAAAACTTCTGAA 58.817 39.130 0.00 0.00 0.00 3.02
7838 11228 4.470334 AGCCAAGCAAAAACTTCTGAAA 57.530 36.364 0.00 0.00 0.00 2.69
7839 11229 4.183865 AGCCAAGCAAAAACTTCTGAAAC 58.816 39.130 0.00 0.00 0.00 2.78
7840 11230 3.932089 GCCAAGCAAAAACTTCTGAAACA 59.068 39.130 0.00 0.00 0.00 2.83
7841 11231 4.201714 GCCAAGCAAAAACTTCTGAAACAC 60.202 41.667 0.00 0.00 0.00 3.32
7842 11232 5.170748 CCAAGCAAAAACTTCTGAAACACT 58.829 37.500 0.00 0.00 0.00 3.55
7843 11233 6.329496 CCAAGCAAAAACTTCTGAAACACTA 58.671 36.000 0.00 0.00 0.00 2.74
7844 11234 6.811170 CCAAGCAAAAACTTCTGAAACACTAA 59.189 34.615 0.00 0.00 0.00 2.24
7845 11235 7.201435 CCAAGCAAAAACTTCTGAAACACTAAC 60.201 37.037 0.00 0.00 0.00 2.34
7846 11236 6.027749 AGCAAAAACTTCTGAAACACTAACG 58.972 36.000 0.00 0.00 0.00 3.18
7847 11237 5.275741 GCAAAAACTTCTGAAACACTAACGC 60.276 40.000 0.00 0.00 0.00 4.84
7848 11238 4.547406 AAACTTCTGAAACACTAACGCC 57.453 40.909 0.00 0.00 0.00 5.68
7849 11239 2.490991 ACTTCTGAAACACTAACGCCC 58.509 47.619 0.00 0.00 0.00 6.13
7850 11240 2.158871 ACTTCTGAAACACTAACGCCCA 60.159 45.455 0.00 0.00 0.00 5.36
7851 11241 1.873698 TCTGAAACACTAACGCCCAC 58.126 50.000 0.00 0.00 0.00 4.61
7852 11242 1.139256 TCTGAAACACTAACGCCCACA 59.861 47.619 0.00 0.00 0.00 4.17
7853 11243 2.151202 CTGAAACACTAACGCCCACAT 58.849 47.619 0.00 0.00 0.00 3.21
7854 11244 1.876799 TGAAACACTAACGCCCACATG 59.123 47.619 0.00 0.00 0.00 3.21
7855 11245 1.877443 GAAACACTAACGCCCACATGT 59.123 47.619 0.00 0.00 0.00 3.21
7856 11246 1.234821 AACACTAACGCCCACATGTG 58.765 50.000 19.31 19.31 0.00 3.21
7857 11247 0.107831 ACACTAACGCCCACATGTGT 59.892 50.000 23.79 8.06 34.38 3.72
7858 11248 0.516877 CACTAACGCCCACATGTGTG 59.483 55.000 23.79 14.60 45.23 3.82
7866 11256 4.063529 CACATGTGTGGGCGTTCT 57.936 55.556 18.03 0.00 42.10 3.01
7867 11257 1.868997 CACATGTGTGGGCGTTCTC 59.131 57.895 18.03 0.00 42.10 2.87
7868 11258 1.302511 ACATGTGTGGGCGTTCTCC 60.303 57.895 0.00 0.00 0.00 3.71
7869 11259 1.302431 CATGTGTGGGCGTTCTCCA 60.302 57.895 0.00 0.00 0.00 3.86
7870 11260 0.888736 CATGTGTGGGCGTTCTCCAA 60.889 55.000 0.00 0.00 35.86 3.53
7871 11261 0.889186 ATGTGTGGGCGTTCTCCAAC 60.889 55.000 0.00 0.00 35.86 3.77
7872 11262 1.227853 GTGTGGGCGTTCTCCAACT 60.228 57.895 0.00 0.00 35.86 3.16
7873 11263 1.070786 TGTGGGCGTTCTCCAACTC 59.929 57.895 0.00 0.00 35.86 3.01
7874 11264 2.027625 GTGGGCGTTCTCCAACTCG 61.028 63.158 0.00 0.00 35.86 4.18
7875 11265 2.342648 GGGCGTTCTCCAACTCGT 59.657 61.111 0.00 0.00 0.00 4.18
7876 11266 1.737008 GGGCGTTCTCCAACTCGTC 60.737 63.158 0.00 0.00 0.00 4.20
7877 11267 1.737008 GGCGTTCTCCAACTCGTCC 60.737 63.158 0.00 0.00 0.00 4.79
7878 11268 1.006571 GCGTTCTCCAACTCGTCCA 60.007 57.895 0.00 0.00 0.00 4.02
7879 11269 1.282930 GCGTTCTCCAACTCGTCCAC 61.283 60.000 0.00 0.00 0.00 4.02
7880 11270 0.031585 CGTTCTCCAACTCGTCCACA 59.968 55.000 0.00 0.00 0.00 4.17
7881 11271 1.499049 GTTCTCCAACTCGTCCACAC 58.501 55.000 0.00 0.00 0.00 3.82
7883 11273 1.105167 TCTCCAACTCGTCCACACGT 61.105 55.000 0.00 0.00 46.76 4.49
7884 11274 0.663568 CTCCAACTCGTCCACACGTC 60.664 60.000 0.00 0.00 46.76 4.34
7885 11275 1.105167 TCCAACTCGTCCACACGTCT 61.105 55.000 0.00 0.00 46.76 4.18
7886 11276 0.939577 CCAACTCGTCCACACGTCTG 60.940 60.000 0.00 0.00 46.76 3.51
7887 11277 0.939577 CAACTCGTCCACACGTCTGG 60.940 60.000 3.01 3.01 46.76 3.86
7888 11278 1.105167 AACTCGTCCACACGTCTGGA 61.105 55.000 8.65 8.65 46.76 3.86
7889 11279 0.894184 ACTCGTCCACACGTCTGGAT 60.894 55.000 16.00 0.00 46.76 3.41
7890 11280 0.456824 CTCGTCCACACGTCTGGATG 60.457 60.000 22.18 22.18 46.76 3.51
7891 11281 1.584495 CGTCCACACGTCTGGATGA 59.416 57.895 23.39 0.00 46.65 2.92
7892 11282 0.173481 CGTCCACACGTCTGGATGAT 59.827 55.000 23.39 0.00 46.65 2.45
7893 11283 1.799181 CGTCCACACGTCTGGATGATC 60.799 57.143 23.39 7.11 46.65 2.92
7894 11284 0.455815 TCCACACGTCTGGATGATCG 59.544 55.000 8.65 0.00 35.23 3.69
7895 11285 0.173481 CCACACGTCTGGATGATCGT 59.827 55.000 3.36 0.00 34.54 3.73
7896 11286 1.404181 CCACACGTCTGGATGATCGTT 60.404 52.381 3.36 0.00 32.93 3.85
7897 11287 1.655597 CACACGTCTGGATGATCGTTG 59.344 52.381 0.00 0.00 32.93 4.10
7898 11288 1.544246 ACACGTCTGGATGATCGTTGA 59.456 47.619 0.00 0.00 32.93 3.18
7899 11289 2.166459 ACACGTCTGGATGATCGTTGAT 59.834 45.455 0.00 0.00 32.93 2.57
7900 11290 3.190079 CACGTCTGGATGATCGTTGATT 58.810 45.455 0.00 0.00 32.93 2.57
7901 11291 3.000623 CACGTCTGGATGATCGTTGATTG 59.999 47.826 0.00 0.00 32.93 2.67
7902 11292 3.190079 CGTCTGGATGATCGTTGATTGT 58.810 45.455 0.00 0.00 0.00 2.71
7903 11293 3.243877 CGTCTGGATGATCGTTGATTGTC 59.756 47.826 0.00 0.00 0.00 3.18
7904 11294 4.437239 GTCTGGATGATCGTTGATTGTCT 58.563 43.478 0.00 0.00 0.00 3.41
7905 11295 4.872691 GTCTGGATGATCGTTGATTGTCTT 59.127 41.667 0.00 0.00 0.00 3.01
7906 11296 5.352569 GTCTGGATGATCGTTGATTGTCTTT 59.647 40.000 0.00 0.00 0.00 2.52
7907 11297 5.939883 TCTGGATGATCGTTGATTGTCTTTT 59.060 36.000 0.00 0.00 0.00 2.27
7908 11298 5.941733 TGGATGATCGTTGATTGTCTTTTG 58.058 37.500 0.00 0.00 0.00 2.44
7909 11299 4.795278 GGATGATCGTTGATTGTCTTTTGC 59.205 41.667 0.00 0.00 0.00 3.68
7910 11300 4.827304 TGATCGTTGATTGTCTTTTGCA 57.173 36.364 0.00 0.00 0.00 4.08
7911 11301 4.536065 TGATCGTTGATTGTCTTTTGCAC 58.464 39.130 0.00 0.00 0.00 4.57
7912 11302 2.980586 TCGTTGATTGTCTTTTGCACG 58.019 42.857 0.00 0.00 0.00 5.34
7913 11303 2.609916 TCGTTGATTGTCTTTTGCACGA 59.390 40.909 0.00 0.00 0.00 4.35
7914 11304 3.064134 TCGTTGATTGTCTTTTGCACGAA 59.936 39.130 0.00 0.00 0.00 3.85
7915 11305 3.974401 CGTTGATTGTCTTTTGCACGAAT 59.026 39.130 0.00 0.00 0.00 3.34
7916 11306 4.087085 CGTTGATTGTCTTTTGCACGAATC 59.913 41.667 0.00 0.00 0.00 2.52
7917 11307 5.215160 GTTGATTGTCTTTTGCACGAATCT 58.785 37.500 0.00 0.00 0.00 2.40
7918 11308 5.437289 TGATTGTCTTTTGCACGAATCTT 57.563 34.783 0.00 0.00 0.00 2.40
7919 11309 6.552859 TGATTGTCTTTTGCACGAATCTTA 57.447 33.333 0.00 0.00 0.00 2.10
7920 11310 6.964908 TGATTGTCTTTTGCACGAATCTTAA 58.035 32.000 0.00 0.00 0.00 1.85
7921 11311 6.855914 TGATTGTCTTTTGCACGAATCTTAAC 59.144 34.615 0.00 0.00 0.00 2.01
7922 11312 5.743026 TGTCTTTTGCACGAATCTTAACA 57.257 34.783 0.00 0.00 0.00 2.41
7923 11313 5.507077 TGTCTTTTGCACGAATCTTAACAC 58.493 37.500 0.00 0.00 0.00 3.32
7924 11314 4.607235 GTCTTTTGCACGAATCTTAACACG 59.393 41.667 0.00 0.00 0.00 4.49
7925 11315 4.508492 TCTTTTGCACGAATCTTAACACGA 59.492 37.500 0.00 0.00 0.00 4.35
7926 11316 4.797693 TTTGCACGAATCTTAACACGAA 57.202 36.364 0.00 0.00 0.00 3.85
7927 11317 4.797693 TTGCACGAATCTTAACACGAAA 57.202 36.364 0.00 0.00 0.00 3.46
7928 11318 4.797693 TGCACGAATCTTAACACGAAAA 57.202 36.364 0.00 0.00 0.00 2.29
7929 11319 5.158101 TGCACGAATCTTAACACGAAAAA 57.842 34.783 0.00 0.00 0.00 1.94
7930 11320 5.201910 TGCACGAATCTTAACACGAAAAAG 58.798 37.500 0.00 0.00 0.00 2.27
7931 11321 4.611366 GCACGAATCTTAACACGAAAAAGG 59.389 41.667 0.00 0.00 0.00 3.11
7932 11322 5.744490 CACGAATCTTAACACGAAAAAGGT 58.256 37.500 0.00 0.00 0.00 3.50
7933 11323 5.619607 CACGAATCTTAACACGAAAAAGGTG 59.380 40.000 0.00 0.00 41.15 4.00
7934 11324 5.144359 CGAATCTTAACACGAAAAAGGTGG 58.856 41.667 0.00 0.00 39.69 4.61
7935 11325 5.049954 CGAATCTTAACACGAAAAAGGTGGA 60.050 40.000 0.00 0.00 39.69 4.02
7936 11326 6.348213 CGAATCTTAACACGAAAAAGGTGGAT 60.348 38.462 0.00 0.00 39.69 3.41
7937 11327 6.894339 ATCTTAACACGAAAAAGGTGGATT 57.106 33.333 0.00 0.00 39.69 3.01
7938 11328 6.702716 TCTTAACACGAAAAAGGTGGATTT 57.297 33.333 0.00 0.00 39.69 2.17
7939 11329 6.500041 TCTTAACACGAAAAAGGTGGATTTG 58.500 36.000 0.00 0.00 39.69 2.32
7940 11330 3.726291 ACACGAAAAAGGTGGATTTGG 57.274 42.857 0.00 0.00 39.69 3.28
7941 11331 3.028130 ACACGAAAAAGGTGGATTTGGT 58.972 40.909 0.00 0.00 39.69 3.67
7942 11332 3.181480 ACACGAAAAAGGTGGATTTGGTG 60.181 43.478 10.48 10.48 45.17 4.17
7943 11333 3.028130 ACGAAAAAGGTGGATTTGGTGT 58.972 40.909 0.00 0.00 0.00 4.16
7944 11334 3.181480 ACGAAAAAGGTGGATTTGGTGTG 60.181 43.478 0.00 0.00 0.00 3.82
7945 11335 2.908688 AAAAGGTGGATTTGGTGTGC 57.091 45.000 0.00 0.00 0.00 4.57
7946 11336 1.047801 AAAGGTGGATTTGGTGTGCC 58.952 50.000 0.00 0.00 0.00 5.01
7947 11337 0.105760 AAGGTGGATTTGGTGTGCCA 60.106 50.000 0.00 0.00 44.38 4.92
7948 11338 0.827507 AGGTGGATTTGGTGTGCCAC 60.828 55.000 0.00 0.00 46.01 5.01
7949 11339 1.285641 GTGGATTTGGTGTGCCACG 59.714 57.895 0.00 0.00 46.01 4.94
7950 11340 1.152860 TGGATTTGGTGTGCCACGT 60.153 52.632 0.00 0.00 46.01 4.49
7951 11341 0.108774 TGGATTTGGTGTGCCACGTA 59.891 50.000 0.00 0.00 46.01 3.57
7952 11342 0.802494 GGATTTGGTGTGCCACGTAG 59.198 55.000 0.00 0.00 46.01 3.51
7953 11343 0.802494 GATTTGGTGTGCCACGTAGG 59.198 55.000 0.00 0.00 46.01 3.18
7954 11344 0.398696 ATTTGGTGTGCCACGTAGGA 59.601 50.000 8.04 0.00 46.01 2.94
7955 11345 0.533308 TTTGGTGTGCCACGTAGGAC 60.533 55.000 0.00 0.00 46.01 3.85
7956 11346 2.702751 TTGGTGTGCCACGTAGGACG 62.703 60.000 0.82 0.00 46.01 4.79
7965 11355 4.143333 CGTAGGACGGGGCTGGTG 62.143 72.222 0.00 0.00 38.08 4.17
7966 11356 3.001406 GTAGGACGGGGCTGGTGT 61.001 66.667 0.00 0.00 0.00 4.16
7967 11357 3.000819 TAGGACGGGGCTGGTGTG 61.001 66.667 0.00 0.00 0.00 3.82
7968 11358 3.839046 TAGGACGGGGCTGGTGTGT 62.839 63.158 0.00 0.00 0.00 3.72
7974 11364 4.250305 GGGCTGGTGTGTGGACGT 62.250 66.667 0.00 0.00 0.00 4.34
7975 11365 2.203153 GGCTGGTGTGTGGACGTT 60.203 61.111 0.00 0.00 0.00 3.99
7976 11366 2.542907 GGCTGGTGTGTGGACGTTG 61.543 63.158 0.00 0.00 0.00 4.10
7977 11367 2.542907 GCTGGTGTGTGGACGTTGG 61.543 63.158 0.00 0.00 0.00 3.77
7978 11368 1.145156 CTGGTGTGTGGACGTTGGA 59.855 57.895 0.00 0.00 0.00 3.53
7979 11369 0.880278 CTGGTGTGTGGACGTTGGAG 60.880 60.000 0.00 0.00 0.00 3.86
7980 11370 1.331399 TGGTGTGTGGACGTTGGAGA 61.331 55.000 0.00 0.00 0.00 3.71
7981 11371 0.600255 GGTGTGTGGACGTTGGAGAG 60.600 60.000 0.00 0.00 0.00 3.20
7982 11372 0.104304 GTGTGTGGACGTTGGAGAGT 59.896 55.000 0.00 0.00 0.00 3.24
7983 11373 0.828022 TGTGTGGACGTTGGAGAGTT 59.172 50.000 0.00 0.00 0.00 3.01
7984 11374 1.208535 TGTGTGGACGTTGGAGAGTTT 59.791 47.619 0.00 0.00 0.00 2.66
7985 11375 2.431419 TGTGTGGACGTTGGAGAGTTTA 59.569 45.455 0.00 0.00 0.00 2.01
7986 11376 2.798847 GTGTGGACGTTGGAGAGTTTAC 59.201 50.000 0.00 0.00 0.00 2.01
7987 11377 2.224113 TGTGGACGTTGGAGAGTTTACC 60.224 50.000 0.00 0.00 0.00 2.85
7988 11378 1.345415 TGGACGTTGGAGAGTTTACCC 59.655 52.381 0.00 0.00 0.00 3.69
7989 11379 1.345415 GGACGTTGGAGAGTTTACCCA 59.655 52.381 0.00 0.00 0.00 4.51
7990 11380 2.410939 GACGTTGGAGAGTTTACCCAC 58.589 52.381 0.00 0.00 0.00 4.61
7991 11381 1.764134 ACGTTGGAGAGTTTACCCACA 59.236 47.619 0.00 0.00 0.00 4.17
7992 11382 2.140717 CGTTGGAGAGTTTACCCACAC 58.859 52.381 0.00 0.00 0.00 3.82
7993 11383 2.140717 GTTGGAGAGTTTACCCACACG 58.859 52.381 0.00 0.00 0.00 4.49
7994 11384 1.416243 TGGAGAGTTTACCCACACGT 58.584 50.000 0.00 0.00 0.00 4.49
7995 11385 1.342174 TGGAGAGTTTACCCACACGTC 59.658 52.381 0.00 0.00 0.00 4.34
7996 11386 1.337541 GGAGAGTTTACCCACACGTCC 60.338 57.143 0.00 0.00 0.00 4.79
7997 11387 0.683412 AGAGTTTACCCACACGTCCC 59.317 55.000 0.00 0.00 0.00 4.46
7998 11388 0.668401 GAGTTTACCCACACGTCCCG 60.668 60.000 0.00 0.00 0.00 5.14
7999 11389 2.030862 TTTACCCACACGTCCCGC 59.969 61.111 0.00 0.00 0.00 6.13
8000 11390 2.804912 TTTACCCACACGTCCCGCA 61.805 57.895 0.00 0.00 0.00 5.69
8001 11391 2.114488 TTTACCCACACGTCCCGCAT 62.114 55.000 0.00 0.00 0.00 4.73
8002 11392 2.510064 TTACCCACACGTCCCGCATC 62.510 60.000 0.00 0.00 0.00 3.91
8003 11393 4.386951 CCCACACGTCCCGCATCA 62.387 66.667 0.00 0.00 0.00 3.07
8004 11394 2.125147 CCACACGTCCCGCATCAT 60.125 61.111 0.00 0.00 0.00 2.45
8005 11395 1.142965 CCACACGTCCCGCATCATA 59.857 57.895 0.00 0.00 0.00 2.15
8006 11396 1.151777 CCACACGTCCCGCATCATAC 61.152 60.000 0.00 0.00 0.00 2.39
8007 11397 0.179111 CACACGTCCCGCATCATACT 60.179 55.000 0.00 0.00 0.00 2.12
8008 11398 0.179111 ACACGTCCCGCATCATACTG 60.179 55.000 0.00 0.00 0.00 2.74
8009 11399 0.179111 CACGTCCCGCATCATACTGT 60.179 55.000 0.00 0.00 0.00 3.55
8010 11400 0.535335 ACGTCCCGCATCATACTGTT 59.465 50.000 0.00 0.00 0.00 3.16
8011 11401 0.930310 CGTCCCGCATCATACTGTTG 59.070 55.000 0.00 0.00 0.00 3.33
8012 11402 0.657840 GTCCCGCATCATACTGTTGC 59.342 55.000 1.06 1.06 39.13 4.17
8013 11403 0.463654 TCCCGCATCATACTGTTGCC 60.464 55.000 4.98 0.00 39.28 4.52
8014 11404 0.747644 CCCGCATCATACTGTTGCCA 60.748 55.000 4.98 0.00 39.28 4.92
8015 11405 0.659427 CCGCATCATACTGTTGCCAG 59.341 55.000 4.98 0.00 39.28 4.85
8016 11406 0.028505 CGCATCATACTGTTGCCAGC 59.971 55.000 4.98 0.00 42.81 4.85
8017 11407 1.386533 GCATCATACTGTTGCCAGCT 58.613 50.000 0.00 0.00 42.81 4.24
8018 11408 1.065102 GCATCATACTGTTGCCAGCTG 59.935 52.381 6.78 6.78 42.81 4.24
8019 11409 1.065102 CATCATACTGTTGCCAGCTGC 59.935 52.381 8.66 4.57 42.81 5.25
8020 11410 1.020861 TCATACTGTTGCCAGCTGCG 61.021 55.000 8.66 2.70 45.60 5.18
8021 11411 2.401766 ATACTGTTGCCAGCTGCGC 61.402 57.895 17.27 17.27 45.60 6.09
8022 11412 2.809861 ATACTGTTGCCAGCTGCGCT 62.810 55.000 22.36 9.05 45.60 5.92
8039 11429 2.989422 GCTGTGTTGGCGAATTAGTT 57.011 45.000 0.00 0.00 0.00 2.24
8040 11430 3.282831 GCTGTGTTGGCGAATTAGTTT 57.717 42.857 0.00 0.00 0.00 2.66
8041 11431 4.413495 GCTGTGTTGGCGAATTAGTTTA 57.587 40.909 0.00 0.00 0.00 2.01
8042 11432 4.981794 GCTGTGTTGGCGAATTAGTTTAT 58.018 39.130 0.00 0.00 0.00 1.40
8043 11433 4.793216 GCTGTGTTGGCGAATTAGTTTATG 59.207 41.667 0.00 0.00 0.00 1.90
8044 11434 4.728534 TGTGTTGGCGAATTAGTTTATGC 58.271 39.130 0.00 0.00 0.00 3.14
8045 11435 4.102649 GTGTTGGCGAATTAGTTTATGCC 58.897 43.478 0.00 0.00 38.71 4.40
8046 11436 3.129638 TGTTGGCGAATTAGTTTATGCCC 59.870 43.478 0.00 0.00 37.88 5.36
8047 11437 3.006112 TGGCGAATTAGTTTATGCCCA 57.994 42.857 0.00 0.00 37.88 5.36
8048 11438 2.685897 TGGCGAATTAGTTTATGCCCAC 59.314 45.455 0.00 0.00 37.88 4.61
8049 11439 2.685897 GGCGAATTAGTTTATGCCCACA 59.314 45.455 0.00 0.00 34.40 4.17
8050 11440 3.488553 GGCGAATTAGTTTATGCCCACAC 60.489 47.826 0.00 0.00 34.40 3.82
8051 11441 3.127895 GCGAATTAGTTTATGCCCACACA 59.872 43.478 0.00 0.00 0.00 3.72
8052 11442 4.730613 GCGAATTAGTTTATGCCCACACAG 60.731 45.833 0.00 0.00 0.00 3.66
8053 11443 4.672409 GAATTAGTTTATGCCCACACAGC 58.328 43.478 0.00 0.00 0.00 4.40
8054 11444 2.122783 TAGTTTATGCCCACACAGCC 57.877 50.000 0.00 0.00 0.00 4.85
8055 11445 0.112218 AGTTTATGCCCACACAGCCA 59.888 50.000 0.00 0.00 0.00 4.75
8056 11446 0.243636 GTTTATGCCCACACAGCCAC 59.756 55.000 0.00 0.00 0.00 5.01
8057 11447 0.897863 TTTATGCCCACACAGCCACC 60.898 55.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 137 1.608025 GCATTCCTCGGAATCGCCATA 60.608 52.381 8.19 0.00 42.30 2.74
164 170 1.505353 GACGAGGATTGACCGTCGT 59.495 57.895 10.68 10.68 46.53 4.34
374 1829 6.377146 AGTGAGTTTTTAGTTGTGGATGTGTT 59.623 34.615 0.00 0.00 0.00 3.32
380 1835 3.630312 GCCAGTGAGTTTTTAGTTGTGGA 59.370 43.478 0.00 0.00 0.00 4.02
381 1836 3.548014 CGCCAGTGAGTTTTTAGTTGTGG 60.548 47.826 0.00 0.00 0.00 4.17
440 1962 4.549516 GAGCCGCCCGTAGTCGTC 62.550 72.222 0.00 0.00 35.01 4.20
445 1967 4.344474 GATCCGAGCCGCCCGTAG 62.344 72.222 0.00 0.00 0.00 3.51
561 2139 1.918293 TCCACCATCGGTTCTGCCT 60.918 57.895 0.00 0.00 31.02 4.75
565 2143 1.183030 TGTCGTCCACCATCGGTTCT 61.183 55.000 0.00 0.00 31.02 3.01
634 2215 0.108329 CACGTATCCCAGGAAAGCGT 60.108 55.000 7.44 7.44 33.06 5.07
721 2313 5.163963 ACACGTTCGACCCGTAAATATTTTC 60.164 40.000 5.91 0.00 36.65 2.29
762 2354 2.485122 GGTCAGCGCGGAAAATGG 59.515 61.111 12.98 0.00 0.00 3.16
791 2387 0.519519 CCGCGACCTGCAAAATAACA 59.480 50.000 8.23 0.00 46.97 2.41
863 2460 1.066143 AGGTCTGAAATAGGTGCGGTG 60.066 52.381 0.00 0.00 0.00 4.94
866 2463 2.093973 AGACAGGTCTGAAATAGGTGCG 60.094 50.000 4.84 0.00 38.75 5.34
912 2509 1.507141 AAGGCTCAACTTTGGTCGCG 61.507 55.000 0.00 0.00 0.00 5.87
937 2538 1.459592 CATCGTTCGGGTCTTGTGTTC 59.540 52.381 0.00 0.00 0.00 3.18
938 2539 1.069513 TCATCGTTCGGGTCTTGTGTT 59.930 47.619 0.00 0.00 0.00 3.32
939 2540 0.677288 TCATCGTTCGGGTCTTGTGT 59.323 50.000 0.00 0.00 0.00 3.72
940 2541 1.790755 TTCATCGTTCGGGTCTTGTG 58.209 50.000 0.00 0.00 0.00 3.33
950 2551 7.636359 CCGAGTTATTTTTCTGATTCATCGTTC 59.364 37.037 0.00 0.00 0.00 3.95
1009 2610 1.476845 TTTACCTGCTCCTGCCGACA 61.477 55.000 0.00 0.00 38.71 4.35
1041 2642 1.495584 GCCGCAACTTCTTGTCGACA 61.496 55.000 15.76 15.76 32.18 4.35
1043 2644 1.959226 GGCCGCAACTTCTTGTCGA 60.959 57.895 0.00 0.00 32.18 4.20
1139 2740 1.753073 GTACATACCAGTAGCGTGGGT 59.247 52.381 7.59 3.17 42.54 4.51
1328 2930 2.882366 GCAGTAGCGCGGGTAATGC 61.882 63.158 18.58 18.58 46.69 3.56
1357 2960 4.371417 ACACGGGCCGAGGGAGTA 62.371 66.667 35.78 0.00 0.00 2.59
1545 3662 4.803908 GCAAGGAAGGAGGGCCGG 62.804 72.222 0.00 0.00 39.96 6.13
1546 3663 4.803908 GGCAAGGAAGGAGGGCCG 62.804 72.222 0.00 0.00 39.96 6.13
1547 3664 4.448976 GGGCAAGGAAGGAGGGCC 62.449 72.222 0.00 0.00 43.86 5.80
1620 4261 1.273896 GGAGGAGAAGGAAGGAGGGAA 60.274 57.143 0.00 0.00 0.00 3.97
1633 4274 5.221864 GGTTCAAAAGAAACTAGGGAGGAGA 60.222 44.000 0.00 0.00 0.00 3.71
1824 4670 7.159322 AGCTAGGGTTCATACTACATTATCG 57.841 40.000 0.00 0.00 0.00 2.92
2486 5497 2.496817 GAGAATCTGCCGTCCGCT 59.503 61.111 0.00 0.00 38.78 5.52
2526 5537 0.107361 TCGTAGCTCCGGTGAGATCA 60.107 55.000 7.92 0.00 41.42 2.92
2559 5570 1.143073 GGTGGACACCCAAAGAGAAGT 59.857 52.381 10.38 0.00 45.59 3.01
2711 5771 6.046593 ACTCCATTCAAATTAGCATGCATTG 58.953 36.000 21.98 17.82 0.00 2.82
2899 5972 1.092348 TCGCAGTACTCGCACATAGT 58.908 50.000 14.77 0.00 0.00 2.12
2940 6013 4.686396 CGATCTTCTACCAGGTGAGGACTA 60.686 50.000 0.76 0.00 0.00 2.59
2943 6016 2.656002 CGATCTTCTACCAGGTGAGGA 58.344 52.381 0.76 4.42 0.00 3.71
2960 6033 1.434622 CTTGATGCTGAAGCGCCGAT 61.435 55.000 2.29 0.00 45.83 4.18
2986 6059 4.315803 ACCGTTTCAACATCGAAGATCTT 58.684 39.130 7.95 7.95 45.12 2.40
2990 6063 2.981805 CGTACCGTTTCAACATCGAAGA 59.018 45.455 0.00 0.00 45.75 2.87
3048 6121 3.743396 ACACGTTGAAGAATCAGAGAAGC 59.257 43.478 0.00 0.00 36.78 3.86
3057 6130 9.581099 AAAGACAAAAATTACACGTTGAAGAAT 57.419 25.926 0.00 0.00 0.00 2.40
3141 6216 5.183713 TCCGTGCTTTCATGATCTTCAAAAT 59.816 36.000 0.00 0.00 0.00 1.82
3172 6247 8.163408 CCATGATGGGTCCTTAGTTGAATTATA 58.837 37.037 2.79 0.00 32.67 0.98
3336 6411 4.984161 CCCAAATGGTCATATTCATTTCGC 59.016 41.667 0.00 0.00 40.37 4.70
3789 6886 4.448060 CCTCGCTTTTAGAAATCCGGTATC 59.552 45.833 0.00 0.00 0.00 2.24
4078 7187 6.550938 AGTCATAATCACAACTCCTCATCA 57.449 37.500 0.00 0.00 0.00 3.07
4147 7260 6.560003 TTCATTACCACTAGTCATCACCAT 57.440 37.500 0.00 0.00 0.00 3.55
4265 7379 3.055891 GCCACTGCTAAAATTGATGGGTT 60.056 43.478 0.00 0.00 33.53 4.11
4266 7380 2.497273 GCCACTGCTAAAATTGATGGGT 59.503 45.455 0.00 0.00 33.53 4.51
4267 7381 2.480073 CGCCACTGCTAAAATTGATGGG 60.480 50.000 0.00 0.00 34.43 4.00
4268 7382 2.801063 CGCCACTGCTAAAATTGATGG 58.199 47.619 0.00 0.00 34.43 3.51
4272 7386 0.798009 CCGCGCCACTGCTAAAATTG 60.798 55.000 0.00 0.00 34.43 2.32
4307 7421 3.994392 CACTACTGGTAAATGAGCGTTGT 59.006 43.478 0.00 0.00 0.00 3.32
4340 7454 2.941064 TGTTCAGATACTAGTAGCGCGT 59.059 45.455 12.27 0.00 0.00 6.01
4371 7485 0.250295 AGCGCTTGTTTAGTCCAGCA 60.250 50.000 2.64 0.00 0.00 4.41
4398 7512 4.142116 TGCTACGGCAGTACAGCTATTTTA 60.142 41.667 10.30 0.00 44.28 1.52
4422 7536 3.343788 GAGCTATCGCCCGCGCTAT 62.344 63.158 5.56 0.00 39.59 2.97
4434 7548 4.697352 CAGTAGCACTGGTTTTTGAGCTAT 59.303 41.667 8.03 0.00 42.35 2.97
4463 7589 8.908903 CACCAGATAGACACTACTAGAGAAAAT 58.091 37.037 0.00 0.00 0.00 1.82
4469 7595 5.375283 AGCACCAGATAGACACTACTAGA 57.625 43.478 0.00 0.00 0.00 2.43
4685 7811 1.079266 CCAGTCCAGCTGTCTCTGC 60.079 63.158 13.81 0.00 43.55 4.26
4804 7930 0.099968 CCTGAAATGACTGCCGCATG 59.900 55.000 0.00 0.00 0.00 4.06
4810 7936 1.198637 GACAGCACCTGAAATGACTGC 59.801 52.381 0.00 0.00 35.18 4.40
4873 7999 0.813610 CGCTTGTCCAACACCAGTCA 60.814 55.000 0.00 0.00 0.00 3.41
4899 8025 1.901159 CCTTGGTGAATGGCATTGGAA 59.099 47.619 19.07 0.00 0.00 3.53
4904 8030 2.291735 TGTCATCCTTGGTGAATGGCAT 60.292 45.455 0.00 0.00 0.00 4.40
4962 8088 4.375272 GCTGCTAGCAGACATGAAGATAA 58.625 43.478 41.87 5.17 46.30 1.75
4991 8117 3.018149 AGGAGAAGGTGTGACGTAGATC 58.982 50.000 0.00 0.00 0.00 2.75
5001 8127 1.843851 TGGTGTCAAAGGAGAAGGTGT 59.156 47.619 0.00 0.00 0.00 4.16
5026 8152 1.517242 CAAGACACCTCCACTCTTGC 58.483 55.000 0.00 0.00 35.74 4.01
5152 8278 1.384525 TGGTAACTGTGTTGGTGCAC 58.615 50.000 8.80 8.80 39.65 4.57
5236 8362 0.696501 ACCTGGTGTTCCCCATGTAC 59.303 55.000 0.00 0.00 32.38 2.90
5267 8393 4.262635 CCACTCTTCACATACCACACTCTT 60.263 45.833 0.00 0.00 0.00 2.85
5412 8539 0.179171 CGCTCATTCGTCCGTACACT 60.179 55.000 0.00 0.00 0.00 3.55
5413 8540 0.455633 ACGCTCATTCGTCCGTACAC 60.456 55.000 0.00 0.00 38.44 2.90
5414 8541 0.241749 AACGCTCATTCGTCCGTACA 59.758 50.000 0.00 0.00 42.46 2.90
5415 8542 0.638746 CAACGCTCATTCGTCCGTAC 59.361 55.000 0.00 0.00 42.46 3.67
5416 8543 0.522626 TCAACGCTCATTCGTCCGTA 59.477 50.000 0.00 0.00 42.46 4.02
5417 8544 0.108804 ATCAACGCTCATTCGTCCGT 60.109 50.000 0.00 0.00 42.46 4.69
5418 8545 0.298707 CATCAACGCTCATTCGTCCG 59.701 55.000 0.00 0.00 42.46 4.79
5419 8546 1.640428 TCATCAACGCTCATTCGTCC 58.360 50.000 0.00 0.00 42.46 4.79
5420 8547 2.860136 TCATCATCAACGCTCATTCGTC 59.140 45.455 0.00 0.00 42.46 4.20
5421 8548 2.604914 GTCATCATCAACGCTCATTCGT 59.395 45.455 0.00 0.00 45.58 3.85
5422 8549 2.604462 TGTCATCATCAACGCTCATTCG 59.396 45.455 0.00 0.00 0.00 3.34
5423 8550 4.337763 GTTGTCATCATCAACGCTCATTC 58.662 43.478 0.00 0.00 36.36 2.67
5424 8551 4.346734 GTTGTCATCATCAACGCTCATT 57.653 40.909 0.00 0.00 36.36 2.57
5431 8558 4.346734 AATGAGCGTTGTCATCATCAAC 57.653 40.909 0.00 0.00 36.07 3.18
5432 8559 5.163764 GGTAAATGAGCGTTGTCATCATCAA 60.164 40.000 0.00 0.00 36.07 2.57
5433 8560 4.332543 GGTAAATGAGCGTTGTCATCATCA 59.667 41.667 0.00 0.00 36.07 3.07
5434 8561 4.332543 TGGTAAATGAGCGTTGTCATCATC 59.667 41.667 0.00 0.00 36.07 2.92
5435 8562 4.260985 TGGTAAATGAGCGTTGTCATCAT 58.739 39.130 0.00 0.00 36.07 2.45
5436 8563 3.669536 TGGTAAATGAGCGTTGTCATCA 58.330 40.909 0.00 0.00 36.07 3.07
5437 8564 3.684788 ACTGGTAAATGAGCGTTGTCATC 59.315 43.478 0.00 0.00 36.07 2.92
5438 8565 3.674997 ACTGGTAAATGAGCGTTGTCAT 58.325 40.909 0.00 0.00 38.91 3.06
5439 8566 3.120321 ACTGGTAAATGAGCGTTGTCA 57.880 42.857 0.00 0.00 0.00 3.58
5440 8567 4.091509 CACTACTGGTAAATGAGCGTTGTC 59.908 45.833 0.00 0.00 0.00 3.18
5441 8568 3.994392 CACTACTGGTAAATGAGCGTTGT 59.006 43.478 0.00 0.00 0.00 3.32
5442 8569 3.181520 GCACTACTGGTAAATGAGCGTTG 60.182 47.826 0.00 0.00 0.00 4.10
5443 8570 3.000727 GCACTACTGGTAAATGAGCGTT 58.999 45.455 0.00 0.00 0.00 4.84
5444 8571 2.028476 TGCACTACTGGTAAATGAGCGT 60.028 45.455 0.00 0.00 0.00 5.07
5445 8572 2.616960 TGCACTACTGGTAAATGAGCG 58.383 47.619 0.00 0.00 0.00 5.03
5446 8573 4.260375 CGAATGCACTACTGGTAAATGAGC 60.260 45.833 0.00 0.00 0.00 4.26
5447 8574 4.870426 ACGAATGCACTACTGGTAAATGAG 59.130 41.667 0.00 0.00 0.00 2.90
5448 8575 4.827692 ACGAATGCACTACTGGTAAATGA 58.172 39.130 0.00 0.00 0.00 2.57
5449 8576 4.629634 TGACGAATGCACTACTGGTAAATG 59.370 41.667 0.00 0.00 0.00 2.32
5450 8577 4.827692 TGACGAATGCACTACTGGTAAAT 58.172 39.130 0.00 0.00 0.00 1.40
5451 8578 4.260139 TGACGAATGCACTACTGGTAAA 57.740 40.909 0.00 0.00 0.00 2.01
5452 8579 3.945981 TGACGAATGCACTACTGGTAA 57.054 42.857 0.00 0.00 0.00 2.85
5453 8580 3.945981 TTGACGAATGCACTACTGGTA 57.054 42.857 0.00 0.00 0.00 3.25
5454 8581 2.831685 TTGACGAATGCACTACTGGT 57.168 45.000 0.00 0.00 0.00 4.00
5455 8582 3.498397 AGTTTTGACGAATGCACTACTGG 59.502 43.478 0.00 0.00 0.00 4.00
5456 8583 4.377431 GGAGTTTTGACGAATGCACTACTG 60.377 45.833 0.00 0.00 0.00 2.74
5457 8584 3.746492 GGAGTTTTGACGAATGCACTACT 59.254 43.478 0.00 0.00 0.00 2.57
5458 8585 3.496884 TGGAGTTTTGACGAATGCACTAC 59.503 43.478 0.00 0.00 0.00 2.73
5459 8586 3.734463 TGGAGTTTTGACGAATGCACTA 58.266 40.909 0.00 0.00 0.00 2.74
5460 8587 2.571212 TGGAGTTTTGACGAATGCACT 58.429 42.857 0.00 0.00 0.00 4.40
5461 8588 3.347958 TTGGAGTTTTGACGAATGCAC 57.652 42.857 0.00 0.00 0.00 4.57
5462 8589 3.820467 AGATTGGAGTTTTGACGAATGCA 59.180 39.130 0.00 0.00 0.00 3.96
5463 8590 4.425577 AGATTGGAGTTTTGACGAATGC 57.574 40.909 0.00 0.00 0.00 3.56
5464 8591 6.470235 GCATAAGATTGGAGTTTTGACGAATG 59.530 38.462 0.00 0.00 0.00 2.67
5465 8592 6.150976 TGCATAAGATTGGAGTTTTGACGAAT 59.849 34.615 0.00 0.00 0.00 3.34
5466 8593 5.471797 TGCATAAGATTGGAGTTTTGACGAA 59.528 36.000 0.00 0.00 0.00 3.85
5467 8594 5.000591 TGCATAAGATTGGAGTTTTGACGA 58.999 37.500 0.00 0.00 0.00 4.20
5468 8595 5.295431 TGCATAAGATTGGAGTTTTGACG 57.705 39.130 0.00 0.00 0.00 4.35
5469 8596 6.470235 CGAATGCATAAGATTGGAGTTTTGAC 59.530 38.462 0.00 0.00 0.00 3.18
5470 8597 6.150976 ACGAATGCATAAGATTGGAGTTTTGA 59.849 34.615 0.00 0.00 0.00 2.69
5471 8598 6.324819 ACGAATGCATAAGATTGGAGTTTTG 58.675 36.000 0.00 0.00 0.00 2.44
5472 8599 6.150976 TGACGAATGCATAAGATTGGAGTTTT 59.849 34.615 0.00 0.00 0.00 2.43
5473 8600 5.647658 TGACGAATGCATAAGATTGGAGTTT 59.352 36.000 0.00 0.00 0.00 2.66
5474 8601 5.185454 TGACGAATGCATAAGATTGGAGTT 58.815 37.500 0.00 0.00 0.00 3.01
5475 8602 4.769688 TGACGAATGCATAAGATTGGAGT 58.230 39.130 0.00 0.00 0.00 3.85
5476 8603 5.739752 TTGACGAATGCATAAGATTGGAG 57.260 39.130 0.00 0.00 0.00 3.86
5477 8604 5.163663 GGTTTGACGAATGCATAAGATTGGA 60.164 40.000 0.00 0.00 0.00 3.53
5478 8605 5.036737 GGTTTGACGAATGCATAAGATTGG 58.963 41.667 0.00 0.00 0.00 3.16
5479 8606 5.639757 TGGTTTGACGAATGCATAAGATTG 58.360 37.500 0.00 0.00 0.00 2.67
5480 8607 5.895636 TGGTTTGACGAATGCATAAGATT 57.104 34.783 0.00 0.00 0.00 2.40
5481 8608 5.824624 AGATGGTTTGACGAATGCATAAGAT 59.175 36.000 0.00 0.00 0.00 2.40
5482 8609 5.065090 CAGATGGTTTGACGAATGCATAAGA 59.935 40.000 0.00 0.00 0.00 2.10
5483 8610 5.268544 CAGATGGTTTGACGAATGCATAAG 58.731 41.667 0.00 0.00 0.00 1.73
5484 8611 4.438608 GCAGATGGTTTGACGAATGCATAA 60.439 41.667 0.00 0.00 32.79 1.90
5485 8612 3.065233 GCAGATGGTTTGACGAATGCATA 59.935 43.478 0.00 0.00 32.79 3.14
5486 8613 2.159338 GCAGATGGTTTGACGAATGCAT 60.159 45.455 0.00 0.00 32.79 3.96
5487 8614 1.199789 GCAGATGGTTTGACGAATGCA 59.800 47.619 0.00 0.00 32.79 3.96
5488 8615 1.199789 TGCAGATGGTTTGACGAATGC 59.800 47.619 0.00 0.00 0.00 3.56
5489 8616 2.730090 GCTGCAGATGGTTTGACGAATG 60.730 50.000 20.43 0.00 0.00 2.67
5490 8617 1.470098 GCTGCAGATGGTTTGACGAAT 59.530 47.619 20.43 0.00 0.00 3.34
5491 8618 0.874390 GCTGCAGATGGTTTGACGAA 59.126 50.000 20.43 0.00 0.00 3.85
5492 8619 0.250252 TGCTGCAGATGGTTTGACGA 60.250 50.000 20.43 0.00 0.00 4.20
5493 8620 0.806868 ATGCTGCAGATGGTTTGACG 59.193 50.000 20.43 0.00 0.00 4.35
5494 8621 2.229543 TCAATGCTGCAGATGGTTTGAC 59.770 45.455 20.43 0.00 0.00 3.18
5495 8622 2.516906 TCAATGCTGCAGATGGTTTGA 58.483 42.857 20.43 14.31 0.00 2.69
5496 8623 3.119280 TCATCAATGCTGCAGATGGTTTG 60.119 43.478 23.47 15.45 39.59 2.93
5497 8624 3.093814 TCATCAATGCTGCAGATGGTTT 58.906 40.909 23.47 5.29 39.59 3.27
5498 8625 2.730382 TCATCAATGCTGCAGATGGTT 58.270 42.857 23.47 5.94 39.59 3.67
5499 8626 2.430248 TCATCAATGCTGCAGATGGT 57.570 45.000 23.47 13.20 39.59 3.55
5500 8627 2.884639 TCATCATCAATGCTGCAGATGG 59.115 45.455 23.47 13.47 39.59 3.51
6620 9991 1.178276 GTCCAGACTGATCCGTCACT 58.822 55.000 18.10 0.00 36.38 3.41
6624 9995 4.035843 GGGTCCAGACTGATCCGT 57.964 61.111 3.32 0.00 0.00 4.69
7010 10391 5.102313 CGTGACATGCTTAGACACTTGATA 58.898 41.667 0.00 0.00 31.17 2.15
7011 10392 3.928992 CGTGACATGCTTAGACACTTGAT 59.071 43.478 0.00 0.00 31.17 2.57
7013 10394 3.059884 ACGTGACATGCTTAGACACTTG 58.940 45.455 0.00 0.00 31.17 3.16
7014 10395 3.243737 TGACGTGACATGCTTAGACACTT 60.244 43.478 0.00 0.00 31.17 3.16
7222 10603 5.874810 TGAATCATAGAAAACAGAACTCCGG 59.125 40.000 0.00 0.00 0.00 5.14
7563 10946 2.489329 TGAGCAGCATTTTTAGAGCCAC 59.511 45.455 0.00 0.00 0.00 5.01
7615 10998 3.438087 CCACAGATTTACTCCAAGCAGTG 59.562 47.826 0.00 0.00 0.00 3.66
7627 11010 3.844211 ACCACTTAGGCTCCACAGATTTA 59.156 43.478 0.00 0.00 43.14 1.40
7833 11223 1.588674 TGTGGGCGTTAGTGTTTCAG 58.411 50.000 0.00 0.00 0.00 3.02
7834 11224 1.876799 CATGTGGGCGTTAGTGTTTCA 59.123 47.619 0.00 0.00 0.00 2.69
7835 11225 1.877443 ACATGTGGGCGTTAGTGTTTC 59.123 47.619 0.00 0.00 0.00 2.78
7836 11226 1.606668 CACATGTGGGCGTTAGTGTTT 59.393 47.619 18.51 0.00 0.00 2.83
7837 11227 1.234821 CACATGTGGGCGTTAGTGTT 58.765 50.000 18.51 0.00 0.00 3.32
7838 11228 0.107831 ACACATGTGGGCGTTAGTGT 59.892 50.000 28.64 1.52 35.58 3.55
7839 11229 0.516877 CACACATGTGGGCGTTAGTG 59.483 55.000 28.64 12.05 42.10 2.74
7840 11230 2.927004 CACACATGTGGGCGTTAGT 58.073 52.632 28.64 3.06 42.10 2.24
7849 11239 1.577328 GGAGAACGCCCACACATGTG 61.577 60.000 24.25 24.25 45.23 3.21
7850 11240 1.302511 GGAGAACGCCCACACATGT 60.303 57.895 0.00 0.00 0.00 3.21
7851 11241 0.888736 TTGGAGAACGCCCACACATG 60.889 55.000 0.00 0.00 32.58 3.21
7852 11242 0.889186 GTTGGAGAACGCCCACACAT 60.889 55.000 0.00 0.00 32.58 3.21
7853 11243 1.525077 GTTGGAGAACGCCCACACA 60.525 57.895 0.00 0.00 32.58 3.72
7854 11244 1.227853 AGTTGGAGAACGCCCACAC 60.228 57.895 2.34 0.00 37.15 3.82
7855 11245 1.070786 GAGTTGGAGAACGCCCACA 59.929 57.895 2.34 0.00 37.15 4.17
7856 11246 2.027625 CGAGTTGGAGAACGCCCAC 61.028 63.158 0.00 0.00 37.15 4.61
7857 11247 2.342279 CGAGTTGGAGAACGCCCA 59.658 61.111 0.00 0.00 37.15 5.36
7858 11248 1.737008 GACGAGTTGGAGAACGCCC 60.737 63.158 0.00 0.00 37.15 6.13
7859 11249 1.737008 GGACGAGTTGGAGAACGCC 60.737 63.158 0.00 0.00 37.15 5.68
7860 11250 1.006571 TGGACGAGTTGGAGAACGC 60.007 57.895 0.00 0.00 37.15 4.84
7861 11251 0.031585 TGTGGACGAGTTGGAGAACG 59.968 55.000 0.00 0.00 37.15 3.95
7862 11252 1.499049 GTGTGGACGAGTTGGAGAAC 58.501 55.000 0.00 0.00 0.00 3.01
7863 11253 3.980583 GTGTGGACGAGTTGGAGAA 57.019 52.632 0.00 0.00 0.00 2.87
7876 11266 0.173481 ACGATCATCCAGACGTGTGG 59.827 55.000 25.19 25.19 39.19 4.17
7877 11267 1.655597 CAACGATCATCCAGACGTGTG 59.344 52.381 5.57 5.57 35.33 3.82
7878 11268 1.544246 TCAACGATCATCCAGACGTGT 59.456 47.619 0.00 0.00 35.33 4.49
7879 11269 2.278026 TCAACGATCATCCAGACGTG 57.722 50.000 0.00 0.00 35.33 4.49
7880 11270 3.190079 CAATCAACGATCATCCAGACGT 58.810 45.455 0.00 0.00 36.19 4.34
7881 11271 3.190079 ACAATCAACGATCATCCAGACG 58.810 45.455 0.00 0.00 0.00 4.18
7882 11272 4.437239 AGACAATCAACGATCATCCAGAC 58.563 43.478 0.00 0.00 0.00 3.51
7883 11273 4.743057 AGACAATCAACGATCATCCAGA 57.257 40.909 0.00 0.00 0.00 3.86
7884 11274 5.808042 AAAGACAATCAACGATCATCCAG 57.192 39.130 0.00 0.00 0.00 3.86
7885 11275 5.619757 GCAAAAGACAATCAACGATCATCCA 60.620 40.000 0.00 0.00 0.00 3.41
7886 11276 4.795278 GCAAAAGACAATCAACGATCATCC 59.205 41.667 0.00 0.00 0.00 3.51
7887 11277 5.284660 GTGCAAAAGACAATCAACGATCATC 59.715 40.000 0.00 0.00 0.00 2.92
7888 11278 5.156355 GTGCAAAAGACAATCAACGATCAT 58.844 37.500 0.00 0.00 0.00 2.45
7889 11279 4.536065 GTGCAAAAGACAATCAACGATCA 58.464 39.130 0.00 0.00 0.00 2.92
7890 11280 3.599514 CGTGCAAAAGACAATCAACGATC 59.400 43.478 0.00 0.00 0.00 3.69
7891 11281 3.249799 TCGTGCAAAAGACAATCAACGAT 59.750 39.130 0.00 0.00 0.00 3.73
7892 11282 2.609916 TCGTGCAAAAGACAATCAACGA 59.390 40.909 0.00 0.00 0.00 3.85
7893 11283 2.980586 TCGTGCAAAAGACAATCAACG 58.019 42.857 0.00 0.00 0.00 4.10
7894 11284 5.215160 AGATTCGTGCAAAAGACAATCAAC 58.785 37.500 0.00 0.00 0.00 3.18
7895 11285 5.437289 AGATTCGTGCAAAAGACAATCAA 57.563 34.783 0.00 0.00 0.00 2.57
7896 11286 5.437289 AAGATTCGTGCAAAAGACAATCA 57.563 34.783 0.00 0.00 0.00 2.57
7897 11287 6.855914 TGTTAAGATTCGTGCAAAAGACAATC 59.144 34.615 0.00 0.00 0.00 2.67
7898 11288 6.636850 GTGTTAAGATTCGTGCAAAAGACAAT 59.363 34.615 0.00 0.00 0.00 2.71
7899 11289 5.968848 GTGTTAAGATTCGTGCAAAAGACAA 59.031 36.000 0.00 0.00 0.00 3.18
7900 11290 5.507077 GTGTTAAGATTCGTGCAAAAGACA 58.493 37.500 0.00 0.00 0.00 3.41
7901 11291 4.607235 CGTGTTAAGATTCGTGCAAAAGAC 59.393 41.667 0.00 0.00 0.00 3.01
7902 11292 4.508492 TCGTGTTAAGATTCGTGCAAAAGA 59.492 37.500 0.00 0.00 0.00 2.52
7903 11293 4.768145 TCGTGTTAAGATTCGTGCAAAAG 58.232 39.130 0.00 0.00 0.00 2.27
7904 11294 4.797693 TCGTGTTAAGATTCGTGCAAAA 57.202 36.364 0.00 0.00 0.00 2.44
7905 11295 4.797693 TTCGTGTTAAGATTCGTGCAAA 57.202 36.364 0.00 0.00 0.00 3.68
7906 11296 4.797693 TTTCGTGTTAAGATTCGTGCAA 57.202 36.364 0.00 0.00 0.00 4.08
7907 11297 4.797693 TTTTCGTGTTAAGATTCGTGCA 57.202 36.364 0.00 0.00 0.00 4.57
7908 11298 4.611366 CCTTTTTCGTGTTAAGATTCGTGC 59.389 41.667 0.00 0.00 0.00 5.34
7909 11299 5.619607 CACCTTTTTCGTGTTAAGATTCGTG 59.380 40.000 0.00 0.00 0.00 4.35
7910 11300 5.277634 CCACCTTTTTCGTGTTAAGATTCGT 60.278 40.000 0.00 0.00 0.00 3.85
7911 11301 5.049954 TCCACCTTTTTCGTGTTAAGATTCG 60.050 40.000 0.00 0.00 0.00 3.34
7912 11302 6.308371 TCCACCTTTTTCGTGTTAAGATTC 57.692 37.500 0.00 0.00 0.00 2.52
7913 11303 6.894339 ATCCACCTTTTTCGTGTTAAGATT 57.106 33.333 0.00 0.00 0.00 2.40
7914 11304 6.894339 AATCCACCTTTTTCGTGTTAAGAT 57.106 33.333 0.00 0.00 0.00 2.40
7915 11305 6.460399 CCAAATCCACCTTTTTCGTGTTAAGA 60.460 38.462 0.00 0.00 0.00 2.10
7916 11306 5.689961 CCAAATCCACCTTTTTCGTGTTAAG 59.310 40.000 0.00 0.00 0.00 1.85
7917 11307 5.127356 ACCAAATCCACCTTTTTCGTGTTAA 59.873 36.000 0.00 0.00 0.00 2.01
7918 11308 4.645588 ACCAAATCCACCTTTTTCGTGTTA 59.354 37.500 0.00 0.00 0.00 2.41
7919 11309 3.449377 ACCAAATCCACCTTTTTCGTGTT 59.551 39.130 0.00 0.00 0.00 3.32
7920 11310 3.028130 ACCAAATCCACCTTTTTCGTGT 58.972 40.909 0.00 0.00 0.00 4.49
7921 11311 3.181480 ACACCAAATCCACCTTTTTCGTG 60.181 43.478 0.00 0.00 0.00 4.35
7922 11312 3.028130 ACACCAAATCCACCTTTTTCGT 58.972 40.909 0.00 0.00 0.00 3.85
7923 11313 3.380142 CACACCAAATCCACCTTTTTCG 58.620 45.455 0.00 0.00 0.00 3.46
7924 11314 3.130633 GCACACCAAATCCACCTTTTTC 58.869 45.455 0.00 0.00 0.00 2.29
7925 11315 2.158827 GGCACACCAAATCCACCTTTTT 60.159 45.455 0.00 0.00 35.26 1.94
7926 11316 1.416030 GGCACACCAAATCCACCTTTT 59.584 47.619 0.00 0.00 35.26 2.27
7927 11317 1.047801 GGCACACCAAATCCACCTTT 58.952 50.000 0.00 0.00 35.26 3.11
7928 11318 0.105760 TGGCACACCAAATCCACCTT 60.106 50.000 0.00 0.00 45.37 3.50
7929 11319 1.541169 TGGCACACCAAATCCACCT 59.459 52.632 0.00 0.00 45.37 4.00
7930 11320 4.189539 TGGCACACCAAATCCACC 57.810 55.556 0.00 0.00 45.37 4.61
7941 11331 3.687102 CCCGTCCTACGTGGCACA 61.687 66.667 19.09 0.00 40.58 4.57
7942 11332 4.446413 CCCCGTCCTACGTGGCAC 62.446 72.222 7.79 7.79 40.58 5.01
7945 11335 4.143333 CAGCCCCGTCCTACGTGG 62.143 72.222 0.00 0.00 42.14 4.94
7946 11336 4.143333 CCAGCCCCGTCCTACGTG 62.143 72.222 0.00 0.00 40.58 4.49
7947 11337 4.691359 ACCAGCCCCGTCCTACGT 62.691 66.667 0.00 0.00 40.58 3.57
7948 11338 4.143333 CACCAGCCCCGTCCTACG 62.143 72.222 0.00 0.00 42.11 3.51
7949 11339 3.001406 ACACCAGCCCCGTCCTAC 61.001 66.667 0.00 0.00 0.00 3.18
7950 11340 3.000819 CACACCAGCCCCGTCCTA 61.001 66.667 0.00 0.00 0.00 2.94
7957 11347 3.767630 AACGTCCACACACCAGCCC 62.768 63.158 0.00 0.00 0.00 5.19
7958 11348 2.203153 AACGTCCACACACCAGCC 60.203 61.111 0.00 0.00 0.00 4.85
7959 11349 2.542907 CCAACGTCCACACACCAGC 61.543 63.158 0.00 0.00 0.00 4.85
7960 11350 0.880278 CTCCAACGTCCACACACCAG 60.880 60.000 0.00 0.00 0.00 4.00
7961 11351 1.145156 CTCCAACGTCCACACACCA 59.855 57.895 0.00 0.00 0.00 4.17
7962 11352 0.600255 CTCTCCAACGTCCACACACC 60.600 60.000 0.00 0.00 0.00 4.16
7963 11353 0.104304 ACTCTCCAACGTCCACACAC 59.896 55.000 0.00 0.00 0.00 3.82
7964 11354 0.828022 AACTCTCCAACGTCCACACA 59.172 50.000 0.00 0.00 0.00 3.72
7965 11355 1.949465 AAACTCTCCAACGTCCACAC 58.051 50.000 0.00 0.00 0.00 3.82
7966 11356 2.224113 GGTAAACTCTCCAACGTCCACA 60.224 50.000 0.00 0.00 0.00 4.17
7967 11357 2.410939 GGTAAACTCTCCAACGTCCAC 58.589 52.381 0.00 0.00 0.00 4.02
7968 11358 1.345415 GGGTAAACTCTCCAACGTCCA 59.655 52.381 0.00 0.00 0.00 4.02
7969 11359 1.345415 TGGGTAAACTCTCCAACGTCC 59.655 52.381 0.00 0.00 0.00 4.79
7970 11360 2.224113 TGTGGGTAAACTCTCCAACGTC 60.224 50.000 0.00 0.00 30.73 4.34
7971 11361 1.764134 TGTGGGTAAACTCTCCAACGT 59.236 47.619 0.00 0.00 30.73 3.99
7972 11362 2.140717 GTGTGGGTAAACTCTCCAACG 58.859 52.381 0.00 0.00 30.73 4.10
7973 11363 2.140717 CGTGTGGGTAAACTCTCCAAC 58.859 52.381 0.00 0.00 31.73 3.77
7974 11364 1.764134 ACGTGTGGGTAAACTCTCCAA 59.236 47.619 0.00 0.00 31.73 3.53
7975 11365 1.342174 GACGTGTGGGTAAACTCTCCA 59.658 52.381 0.00 0.00 0.00 3.86
7976 11366 1.337541 GGACGTGTGGGTAAACTCTCC 60.338 57.143 0.00 0.00 0.00 3.71
7977 11367 1.337541 GGGACGTGTGGGTAAACTCTC 60.338 57.143 0.00 0.00 0.00 3.20
7978 11368 0.683412 GGGACGTGTGGGTAAACTCT 59.317 55.000 0.00 0.00 0.00 3.24
7979 11369 3.222053 GGGACGTGTGGGTAAACTC 57.778 57.895 0.00 0.00 0.00 3.01
8020 11410 2.989422 AACTAATTCGCCAACACAGC 57.011 45.000 0.00 0.00 0.00 4.40
8021 11411 4.793216 GCATAAACTAATTCGCCAACACAG 59.207 41.667 0.00 0.00 0.00 3.66
8022 11412 4.380023 GGCATAAACTAATTCGCCAACACA 60.380 41.667 0.00 0.00 38.81 3.72
8023 11413 4.102649 GGCATAAACTAATTCGCCAACAC 58.897 43.478 0.00 0.00 38.81 3.32
8024 11414 3.129638 GGGCATAAACTAATTCGCCAACA 59.870 43.478 0.00 0.00 40.08 3.33
8025 11415 3.129638 TGGGCATAAACTAATTCGCCAAC 59.870 43.478 0.00 0.00 40.08 3.77
8026 11416 3.129638 GTGGGCATAAACTAATTCGCCAA 59.870 43.478 0.00 0.00 40.08 4.52
8027 11417 2.685897 GTGGGCATAAACTAATTCGCCA 59.314 45.455 0.00 0.00 40.08 5.69
8028 11418 2.685897 TGTGGGCATAAACTAATTCGCC 59.314 45.455 0.00 0.00 38.44 5.54
8029 11419 3.127895 TGTGTGGGCATAAACTAATTCGC 59.872 43.478 0.00 0.00 0.00 4.70
8030 11420 4.730613 GCTGTGTGGGCATAAACTAATTCG 60.731 45.833 0.00 0.00 0.00 3.34
8031 11421 4.440112 GGCTGTGTGGGCATAAACTAATTC 60.440 45.833 0.00 0.00 0.00 2.17
8032 11422 3.447229 GGCTGTGTGGGCATAAACTAATT 59.553 43.478 0.00 0.00 0.00 1.40
8033 11423 3.023832 GGCTGTGTGGGCATAAACTAAT 58.976 45.455 0.00 0.00 0.00 1.73
8034 11424 2.224892 TGGCTGTGTGGGCATAAACTAA 60.225 45.455 0.00 0.00 36.85 2.24
8035 11425 1.352687 TGGCTGTGTGGGCATAAACTA 59.647 47.619 0.00 0.00 36.85 2.24
8036 11426 0.112218 TGGCTGTGTGGGCATAAACT 59.888 50.000 0.00 0.00 36.85 2.66
8037 11427 0.243636 GTGGCTGTGTGGGCATAAAC 59.756 55.000 0.00 0.00 43.39 2.01
8038 11428 0.897863 GGTGGCTGTGTGGGCATAAA 60.898 55.000 0.00 0.00 43.39 1.40
8039 11429 1.304052 GGTGGCTGTGTGGGCATAA 60.304 57.895 0.00 0.00 43.39 1.90
8040 11430 2.354729 GGTGGCTGTGTGGGCATA 59.645 61.111 0.00 0.00 43.39 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.