Multiple sequence alignment - TraesCS1B01G222400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G222400 chr1B 100.000 4222 0 0 1501 5722 400147170 400142949 0.000000e+00 7797.0
1 TraesCS1B01G222400 chr1B 100.000 1214 0 0 1 1214 400148670 400147457 0.000000e+00 2242.0
2 TraesCS1B01G222400 chr1B 95.679 162 7 0 1053 1214 400147170 400147009 1.580000e-65 261.0
3 TraesCS1B01G222400 chr1B 95.679 162 7 0 1501 1662 400147618 400147457 1.580000e-65 261.0
4 TraesCS1B01G222400 chr1A 94.597 3572 139 21 1501 5031 370025068 370021510 0.000000e+00 5478.0
5 TraesCS1B01G222400 chr1A 93.204 412 12 7 809 1214 370025308 370024907 4.940000e-165 592.0
6 TraesCS1B01G222400 chr1A 85.849 106 13 2 430 534 504719003 504719107 1.690000e-20 111.0
7 TraesCS1B01G222400 chr1D 97.627 2360 56 0 1501 3860 297392460 297390101 0.000000e+00 4048.0
8 TraesCS1B01G222400 chr1D 93.563 901 31 11 4126 5000 297389807 297388908 0.000000e+00 1317.0
9 TraesCS1B01G222400 chr1D 93.897 213 13 0 3898 4110 297390100 297389888 7.150000e-84 322.0
10 TraesCS1B01G222400 chr1D 91.457 199 7 3 813 1011 297392787 297392599 1.220000e-66 265.0
11 TraesCS1B01G222400 chr1D 95.679 162 7 0 1053 1214 297392460 297392299 1.580000e-65 261.0
12 TraesCS1B01G222400 chr2B 94.920 689 29 3 5035 5722 752851770 752852453 0.000000e+00 1074.0
13 TraesCS1B01G222400 chrUn 93.678 696 30 8 5028 5722 41588571 41587889 0.000000e+00 1029.0
14 TraesCS1B01G222400 chrUn 93.678 696 30 7 5028 5722 346207596 346208278 0.000000e+00 1029.0
15 TraesCS1B01G222400 chrUn 85.897 78 11 0 457 534 368385903 368385980 3.670000e-12 84.2
16 TraesCS1B01G222400 chr3B 93.660 694 35 8 5032 5722 14392028 14392715 0.000000e+00 1029.0
17 TraesCS1B01G222400 chr3B 96.850 127 4 0 681 807 504977916 504977790 4.490000e-51 213.0
18 TraesCS1B01G222400 chr3B 91.406 128 10 1 681 807 74265722 74265849 2.120000e-39 174.0
19 TraesCS1B01G222400 chr2A 93.506 693 39 3 5032 5722 44086366 44087054 0.000000e+00 1026.0
20 TraesCS1B01G222400 chr2A 94.253 609 29 4 5037 5643 698293996 698293392 0.000000e+00 926.0
21 TraesCS1B01G222400 chr5B 93.257 697 35 8 5028 5722 459456790 459456104 0.000000e+00 1016.0
22 TraesCS1B01G222400 chr5B 93.064 692 35 4 5032 5722 655018069 655018748 0.000000e+00 1000.0
23 TraesCS1B01G222400 chr5B 92.188 128 9 1 681 807 438798579 438798706 4.560000e-41 180.0
24 TraesCS1B01G222400 chr2D 88.588 701 64 10 5031 5717 599216420 599215722 0.000000e+00 837.0
25 TraesCS1B01G222400 chr5D 93.600 125 8 0 681 805 25322687 25322563 2.720000e-43 187.0
26 TraesCS1B01G222400 chr5D 90.476 126 11 1 681 805 388117880 388117755 1.280000e-36 165.0
27 TraesCS1B01G222400 chr7D 91.729 133 11 0 402 534 6855375 6855507 9.790000e-43 185.0
28 TraesCS1B01G222400 chr5A 92.969 128 8 1 681 807 502552092 502551965 9.790000e-43 185.0
29 TraesCS1B01G222400 chr4B 92.913 127 7 2 681 805 25555449 25555575 3.520000e-42 183.0
30 TraesCS1B01G222400 chr4B 91.339 127 9 2 681 805 25556307 25556433 7.620000e-39 172.0
31 TraesCS1B01G222400 chr7B 92.126 127 10 0 681 807 106733861 106733987 4.560000e-41 180.0
32 TraesCS1B01G222400 chr6D 88.722 133 14 1 402 534 471828722 471828591 1.650000e-35 161.0
33 TraesCS1B01G222400 chr6D 86.364 110 15 0 425 534 377194527 377194636 2.800000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G222400 chr1B 400142949 400148670 5721 True 2640.25 7797 97.8395 1 5722 4 chr1B.!!$R1 5721
1 TraesCS1B01G222400 chr1A 370021510 370025308 3798 True 3035.00 5478 93.9005 809 5031 2 chr1A.!!$R1 4222
2 TraesCS1B01G222400 chr1D 297388908 297392787 3879 True 1242.60 4048 94.4446 813 5000 5 chr1D.!!$R1 4187
3 TraesCS1B01G222400 chr2B 752851770 752852453 683 False 1074.00 1074 94.9200 5035 5722 1 chr2B.!!$F1 687
4 TraesCS1B01G222400 chrUn 41587889 41588571 682 True 1029.00 1029 93.6780 5028 5722 1 chrUn.!!$R1 694
5 TraesCS1B01G222400 chrUn 346207596 346208278 682 False 1029.00 1029 93.6780 5028 5722 1 chrUn.!!$F1 694
6 TraesCS1B01G222400 chr3B 14392028 14392715 687 False 1029.00 1029 93.6600 5032 5722 1 chr3B.!!$F1 690
7 TraesCS1B01G222400 chr2A 44086366 44087054 688 False 1026.00 1026 93.5060 5032 5722 1 chr2A.!!$F1 690
8 TraesCS1B01G222400 chr2A 698293392 698293996 604 True 926.00 926 94.2530 5037 5643 1 chr2A.!!$R1 606
9 TraesCS1B01G222400 chr5B 459456104 459456790 686 True 1016.00 1016 93.2570 5028 5722 1 chr5B.!!$R1 694
10 TraesCS1B01G222400 chr5B 655018069 655018748 679 False 1000.00 1000 93.0640 5032 5722 1 chr5B.!!$F2 690
11 TraesCS1B01G222400 chr2D 599215722 599216420 698 True 837.00 837 88.5880 5031 5717 1 chr2D.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.033504 GGTCCGAAACAGACAGCAGA 59.966 55.000 0.0 0.0 35.89 4.26 F
480 481 0.039618 AAATCGCTGGGGTGGACATT 59.960 50.000 0.0 0.0 0.00 2.71 F
976 977 0.237498 GTTGTCAGCAACGCTAACCC 59.763 55.000 0.0 0.0 44.40 4.11 F
977 978 0.887387 TTGTCAGCAACGCTAACCCC 60.887 55.000 0.0 0.0 36.40 4.95 F
2590 2591 1.557371 TCAGGTGATTCAATGGCCGTA 59.443 47.619 0.0 0.0 0.00 4.02 F
3016 3017 0.035630 CCTCTGGACTGCTTGGAAGG 60.036 60.000 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2041 0.389817 CTCGTCCGCCACATCAAAGA 60.390 55.000 0.00 0.0 0.00 2.52 R
2344 2345 1.334689 GCCGTGATGTCATCGACGATA 60.335 52.381 25.88 0.0 36.56 2.92 R
2590 2591 0.035317 TCGTTGCCATCAGCTTCTGT 59.965 50.000 0.00 0.0 44.23 3.41 R
2632 2633 0.179067 TGGTCGTCTCCAACACAACC 60.179 55.000 0.00 0.0 34.24 3.77 R
3490 3497 3.490439 TCTTCACTTGCTGGATTGTCA 57.510 42.857 0.00 0.0 0.00 3.58 R
4725 4824 0.254178 GAAGCTCAGCCATCTTGGGA 59.746 55.000 0.00 0.0 38.19 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.982701 ACCTGGGGCAGCAGCAAC 62.983 66.667 2.65 0.00 44.61 4.17
22 23 4.043200 GGGCAGCAGCAACCGAAC 62.043 66.667 2.65 0.00 44.61 3.95
23 24 4.043200 GGCAGCAGCAACCGAACC 62.043 66.667 2.65 0.00 44.61 3.62
24 25 2.980233 GCAGCAGCAACCGAACCT 60.980 61.111 0.00 0.00 41.58 3.50
25 26 2.970974 GCAGCAGCAACCGAACCTC 61.971 63.158 0.00 0.00 41.58 3.85
26 27 2.357517 AGCAGCAACCGAACCTCG 60.358 61.111 0.00 0.00 40.07 4.63
27 28 4.090057 GCAGCAACCGAACCTCGC 62.090 66.667 0.00 0.00 38.82 5.03
28 29 3.423154 CAGCAACCGAACCTCGCC 61.423 66.667 0.00 0.00 38.82 5.54
29 30 4.699522 AGCAACCGAACCTCGCCC 62.700 66.667 0.00 0.00 38.82 6.13
31 32 2.742372 CAACCGAACCTCGCCCAG 60.742 66.667 0.00 0.00 38.82 4.45
32 33 3.239253 AACCGAACCTCGCCCAGT 61.239 61.111 0.00 0.00 38.82 4.00
33 34 3.236003 AACCGAACCTCGCCCAGTC 62.236 63.158 0.00 0.00 38.82 3.51
34 35 4.452733 CCGAACCTCGCCCAGTCC 62.453 72.222 0.00 0.00 38.82 3.85
35 36 3.691342 CGAACCTCGCCCAGTCCA 61.691 66.667 0.00 0.00 31.14 4.02
36 37 2.047179 GAACCTCGCCCAGTCCAC 60.047 66.667 0.00 0.00 0.00 4.02
37 38 3.934391 GAACCTCGCCCAGTCCACG 62.934 68.421 0.00 0.00 0.00 4.94
39 40 4.436998 CCTCGCCCAGTCCACGTC 62.437 72.222 0.00 0.00 0.00 4.34
40 41 4.436998 CTCGCCCAGTCCACGTCC 62.437 72.222 0.00 0.00 0.00 4.79
43 44 4.394712 GCCCAGTCCACGTCCCAG 62.395 72.222 0.00 0.00 0.00 4.45
44 45 4.394712 CCCAGTCCACGTCCCAGC 62.395 72.222 0.00 0.00 0.00 4.85
45 46 4.742201 CCAGTCCACGTCCCAGCG 62.742 72.222 0.00 0.00 37.94 5.18
53 54 3.449227 CGTCCCAGCGCTCAGGTA 61.449 66.667 19.83 0.00 0.00 3.08
54 55 2.184579 GTCCCAGCGCTCAGGTAC 59.815 66.667 19.83 8.16 0.00 3.34
55 56 3.075005 TCCCAGCGCTCAGGTACC 61.075 66.667 19.83 2.73 0.00 3.34
56 57 4.514577 CCCAGCGCTCAGGTACCG 62.515 72.222 7.13 1.56 0.00 4.02
57 58 4.514577 CCAGCGCTCAGGTACCGG 62.515 72.222 7.13 5.86 0.00 5.28
84 85 2.914379 GGTGGTCCGAAACAGACAG 58.086 57.895 0.00 0.00 35.89 3.51
85 86 1.228657 GGTGGTCCGAAACAGACAGC 61.229 60.000 0.00 0.00 35.89 4.40
86 87 0.531974 GTGGTCCGAAACAGACAGCA 60.532 55.000 0.00 0.00 35.89 4.41
87 88 0.249868 TGGTCCGAAACAGACAGCAG 60.250 55.000 0.00 0.00 35.89 4.24
88 89 0.033504 GGTCCGAAACAGACAGCAGA 59.966 55.000 0.00 0.00 35.89 4.26
89 90 1.140816 GTCCGAAACAGACAGCAGAC 58.859 55.000 0.00 0.00 34.27 3.51
90 91 0.750249 TCCGAAACAGACAGCAGACA 59.250 50.000 0.00 0.00 0.00 3.41
91 92 1.143305 CCGAAACAGACAGCAGACAG 58.857 55.000 0.00 0.00 0.00 3.51
92 93 0.510359 CGAAACAGACAGCAGACAGC 59.490 55.000 0.00 0.00 46.19 4.40
120 121 3.490759 CAGCGCACGATGGTGGAC 61.491 66.667 11.47 0.00 44.54 4.02
146 147 3.710722 CGAGCAAGTGAGGGGGCT 61.711 66.667 0.00 0.00 39.75 5.19
147 148 2.045536 GAGCAAGTGAGGGGGCTG 60.046 66.667 0.00 0.00 36.59 4.85
148 149 2.530151 AGCAAGTGAGGGGGCTGA 60.530 61.111 0.00 0.00 34.83 4.26
149 150 2.360475 GCAAGTGAGGGGGCTGAC 60.360 66.667 0.00 0.00 0.00 3.51
150 151 2.352805 CAAGTGAGGGGGCTGACC 59.647 66.667 0.00 0.00 39.11 4.02
151 152 2.121963 AAGTGAGGGGGCTGACCA 60.122 61.111 0.00 0.00 42.91 4.02
152 153 1.542375 AAGTGAGGGGGCTGACCAT 60.542 57.895 0.00 0.00 42.91 3.55
153 154 1.566298 AAGTGAGGGGGCTGACCATC 61.566 60.000 0.00 0.00 42.91 3.51
154 155 3.083349 TGAGGGGGCTGACCATCG 61.083 66.667 0.00 0.00 43.97 3.84
155 156 4.554036 GAGGGGGCTGACCATCGC 62.554 72.222 0.00 0.00 42.91 4.58
162 163 4.794439 CTGACCATCGCGCGGTGA 62.794 66.667 42.16 23.02 36.69 4.02
163 164 4.794439 TGACCATCGCGCGGTGAG 62.794 66.667 42.16 31.90 36.69 3.51
183 184 4.463879 CTGTCGCTGGGCTGGAGG 62.464 72.222 0.00 0.00 0.00 4.30
188 189 3.883549 GCTGGGCTGGAGGGGATC 61.884 72.222 0.00 0.00 0.00 3.36
216 217 4.767255 GGAGGGCCGACAGCAGTG 62.767 72.222 0.00 0.00 46.50 3.66
222 223 4.457496 CCGACAGCAGTGCGGGAT 62.457 66.667 19.59 0.00 38.76 3.85
223 224 3.190849 CGACAGCAGTGCGGGATG 61.191 66.667 19.59 10.20 0.00 3.51
224 225 3.503363 GACAGCAGTGCGGGATGC 61.503 66.667 19.59 2.45 46.70 3.91
246 247 3.775654 GCGGAGGAGGTGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
247 248 3.077556 CGGAGGAGGTGGTGGAGG 61.078 72.222 0.00 0.00 0.00 4.30
248 249 3.403558 GGAGGAGGTGGTGGAGGC 61.404 72.222 0.00 0.00 0.00 4.70
249 250 2.607750 GAGGAGGTGGTGGAGGCA 60.608 66.667 0.00 0.00 0.00 4.75
250 251 2.608988 AGGAGGTGGTGGAGGCAG 60.609 66.667 0.00 0.00 0.00 4.85
251 252 2.930562 GGAGGTGGTGGAGGCAGT 60.931 66.667 0.00 0.00 0.00 4.40
252 253 2.665603 GAGGTGGTGGAGGCAGTC 59.334 66.667 0.00 0.00 0.00 3.51
253 254 3.302347 GAGGTGGTGGAGGCAGTCG 62.302 68.421 0.00 0.00 0.00 4.18
254 255 4.394712 GGTGGTGGAGGCAGTCGG 62.395 72.222 0.00 0.00 0.00 4.79
255 256 4.394712 GTGGTGGAGGCAGTCGGG 62.395 72.222 0.00 0.00 0.00 5.14
258 259 4.767255 GTGGAGGCAGTCGGGCAG 62.767 72.222 0.00 0.00 46.44 4.85
265 266 4.504916 CAGTCGGGCAGCGGAGAG 62.505 72.222 0.00 0.00 0.00 3.20
272 273 3.917760 GCAGCGGAGAGGCGGTAT 61.918 66.667 0.00 0.00 38.18 2.73
273 274 2.561956 GCAGCGGAGAGGCGGTATA 61.562 63.158 0.00 0.00 38.18 1.47
274 275 1.581954 CAGCGGAGAGGCGGTATAG 59.418 63.158 0.00 0.00 38.18 1.31
275 276 1.604023 AGCGGAGAGGCGGTATAGG 60.604 63.158 0.00 0.00 38.18 2.57
276 277 2.963371 CGGAGAGGCGGTATAGGC 59.037 66.667 0.00 0.00 0.00 3.93
277 278 2.963371 GGAGAGGCGGTATAGGCG 59.037 66.667 0.00 0.00 41.99 5.52
278 279 2.258897 GAGAGGCGGTATAGGCGC 59.741 66.667 0.00 0.00 41.99 6.53
279 280 3.612371 GAGAGGCGGTATAGGCGCG 62.612 68.421 0.00 0.00 41.06 6.86
280 281 4.719369 GAGGCGGTATAGGCGCGG 62.719 72.222 8.83 0.00 41.99 6.46
319 320 4.988598 ACCGACGTTGGGCTGCAG 62.989 66.667 25.74 10.11 0.00 4.41
321 322 4.988598 CGACGTTGGGCTGCAGGT 62.989 66.667 17.12 2.92 0.00 4.00
322 323 3.357079 GACGTTGGGCTGCAGGTG 61.357 66.667 17.12 0.00 0.00 4.00
323 324 4.954970 ACGTTGGGCTGCAGGTGG 62.955 66.667 17.12 0.00 0.00 4.61
325 326 4.603535 GTTGGGCTGCAGGTGGGT 62.604 66.667 17.12 0.00 0.00 4.51
326 327 4.601794 TTGGGCTGCAGGTGGGTG 62.602 66.667 17.12 0.00 0.00 4.61
330 331 4.052518 GCTGCAGGTGGGTGGGAT 62.053 66.667 17.12 0.00 0.00 3.85
331 332 2.273449 CTGCAGGTGGGTGGGATC 59.727 66.667 5.57 0.00 0.00 3.36
332 333 3.338250 TGCAGGTGGGTGGGATCC 61.338 66.667 1.92 1.92 0.00 3.36
333 334 3.338250 GCAGGTGGGTGGGATCCA 61.338 66.667 15.23 0.00 0.00 3.41
334 335 2.917897 GCAGGTGGGTGGGATCCAA 61.918 63.158 15.23 0.00 34.18 3.53
335 336 2.010067 CAGGTGGGTGGGATCCAAT 58.990 57.895 15.23 0.00 34.18 3.16
336 337 0.106519 CAGGTGGGTGGGATCCAATC 60.107 60.000 15.23 1.24 34.18 2.67
354 355 2.973899 CTATGGGAGGATCGGCGG 59.026 66.667 7.21 0.00 34.37 6.13
355 356 3.302347 CTATGGGAGGATCGGCGGC 62.302 68.421 7.21 0.00 34.37 6.53
378 379 3.706373 GGGCTGCGAGTGAGGGAA 61.706 66.667 0.00 0.00 0.00 3.97
379 380 2.347490 GGCTGCGAGTGAGGGAAA 59.653 61.111 0.00 0.00 0.00 3.13
380 381 1.302511 GGCTGCGAGTGAGGGAAAA 60.303 57.895 0.00 0.00 0.00 2.29
381 382 0.678048 GGCTGCGAGTGAGGGAAAAT 60.678 55.000 0.00 0.00 0.00 1.82
382 383 0.449388 GCTGCGAGTGAGGGAAAATG 59.551 55.000 0.00 0.00 0.00 2.32
383 384 0.449388 CTGCGAGTGAGGGAAAATGC 59.551 55.000 0.00 0.00 0.00 3.56
384 385 0.250684 TGCGAGTGAGGGAAAATGCA 60.251 50.000 0.00 0.00 0.00 3.96
385 386 0.449388 GCGAGTGAGGGAAAATGCAG 59.551 55.000 0.00 0.00 0.00 4.41
386 387 1.089920 CGAGTGAGGGAAAATGCAGG 58.910 55.000 0.00 0.00 0.00 4.85
387 388 1.611673 CGAGTGAGGGAAAATGCAGGT 60.612 52.381 0.00 0.00 0.00 4.00
388 389 2.087646 GAGTGAGGGAAAATGCAGGTC 58.912 52.381 0.00 0.00 0.00 3.85
389 390 1.707427 AGTGAGGGAAAATGCAGGTCT 59.293 47.619 0.00 0.00 0.00 3.85
390 391 2.108952 AGTGAGGGAAAATGCAGGTCTT 59.891 45.455 0.00 0.00 0.00 3.01
391 392 2.893489 GTGAGGGAAAATGCAGGTCTTT 59.107 45.455 0.00 0.00 0.00 2.52
392 393 3.321968 GTGAGGGAAAATGCAGGTCTTTT 59.678 43.478 0.00 0.00 0.00 2.27
393 394 3.966665 TGAGGGAAAATGCAGGTCTTTTT 59.033 39.130 0.00 0.00 35.52 1.94
425 426 4.147701 CGCAGGGGAATAAGGCTG 57.852 61.111 0.00 0.00 0.00 4.85
426 427 1.526887 CGCAGGGGAATAAGGCTGA 59.473 57.895 0.00 0.00 0.00 4.26
427 428 0.109342 CGCAGGGGAATAAGGCTGAT 59.891 55.000 0.00 0.00 0.00 2.90
428 429 1.477558 CGCAGGGGAATAAGGCTGATT 60.478 52.381 0.00 0.00 0.00 2.57
429 430 1.959282 GCAGGGGAATAAGGCTGATTG 59.041 52.381 0.57 0.00 0.00 2.67
430 431 2.590821 CAGGGGAATAAGGCTGATTGG 58.409 52.381 0.57 0.00 0.00 3.16
431 432 1.500736 AGGGGAATAAGGCTGATTGGG 59.499 52.381 0.57 0.00 0.00 4.12
432 433 1.217942 GGGGAATAAGGCTGATTGGGT 59.782 52.381 0.57 0.00 0.00 4.51
433 434 2.310538 GGGAATAAGGCTGATTGGGTG 58.689 52.381 0.57 0.00 0.00 4.61
434 435 2.091885 GGGAATAAGGCTGATTGGGTGA 60.092 50.000 0.57 0.00 0.00 4.02
435 436 3.437052 GGGAATAAGGCTGATTGGGTGAT 60.437 47.826 0.57 0.00 0.00 3.06
436 437 4.218312 GGAATAAGGCTGATTGGGTGATT 58.782 43.478 0.57 0.00 0.00 2.57
437 438 4.651045 GGAATAAGGCTGATTGGGTGATTT 59.349 41.667 0.57 0.00 0.00 2.17
438 439 5.129320 GGAATAAGGCTGATTGGGTGATTTT 59.871 40.000 0.57 0.00 0.00 1.82
439 440 3.967332 AAGGCTGATTGGGTGATTTTG 57.033 42.857 0.00 0.00 0.00 2.44
440 441 2.181975 AGGCTGATTGGGTGATTTTGG 58.818 47.619 0.00 0.00 0.00 3.28
441 442 2.178580 GGCTGATTGGGTGATTTTGGA 58.821 47.619 0.00 0.00 0.00 3.53
442 443 2.566724 GGCTGATTGGGTGATTTTGGAA 59.433 45.455 0.00 0.00 0.00 3.53
443 444 3.007831 GGCTGATTGGGTGATTTTGGAAA 59.992 43.478 0.00 0.00 0.00 3.13
444 445 3.996363 GCTGATTGGGTGATTTTGGAAAC 59.004 43.478 0.00 0.00 0.00 2.78
445 446 4.262592 GCTGATTGGGTGATTTTGGAAACT 60.263 41.667 0.00 0.00 0.00 2.66
446 447 5.212532 TGATTGGGTGATTTTGGAAACTG 57.787 39.130 0.00 0.00 0.00 3.16
447 448 4.898265 TGATTGGGTGATTTTGGAAACTGA 59.102 37.500 0.00 0.00 0.00 3.41
448 449 5.365025 TGATTGGGTGATTTTGGAAACTGAA 59.635 36.000 0.00 0.00 0.00 3.02
449 450 5.885449 TTGGGTGATTTTGGAAACTGAAT 57.115 34.783 0.00 0.00 0.00 2.57
450 451 6.985653 TTGGGTGATTTTGGAAACTGAATA 57.014 33.333 0.00 0.00 0.00 1.75
451 452 6.985653 TGGGTGATTTTGGAAACTGAATAA 57.014 33.333 0.00 0.00 0.00 1.40
452 453 7.552050 TGGGTGATTTTGGAAACTGAATAAT 57.448 32.000 0.00 0.00 0.00 1.28
453 454 7.385267 TGGGTGATTTTGGAAACTGAATAATG 58.615 34.615 0.00 0.00 0.00 1.90
454 455 7.234371 TGGGTGATTTTGGAAACTGAATAATGA 59.766 33.333 0.00 0.00 0.00 2.57
455 456 7.545615 GGGTGATTTTGGAAACTGAATAATGAC 59.454 37.037 0.00 0.00 0.00 3.06
456 457 7.273381 GGTGATTTTGGAAACTGAATAATGACG 59.727 37.037 0.00 0.00 0.00 4.35
457 458 7.807907 GTGATTTTGGAAACTGAATAATGACGT 59.192 33.333 0.00 0.00 0.00 4.34
458 459 7.807433 TGATTTTGGAAACTGAATAATGACGTG 59.193 33.333 0.00 0.00 0.00 4.49
459 460 5.621197 TTGGAAACTGAATAATGACGTGG 57.379 39.130 0.00 0.00 0.00 4.94
460 461 3.438781 TGGAAACTGAATAATGACGTGGC 59.561 43.478 0.00 0.00 0.00 5.01
461 462 3.438781 GGAAACTGAATAATGACGTGGCA 59.561 43.478 0.00 0.00 0.00 4.92
462 463 4.083003 GGAAACTGAATAATGACGTGGCAA 60.083 41.667 0.00 0.00 0.00 4.52
463 464 5.446143 AAACTGAATAATGACGTGGCAAA 57.554 34.783 0.00 0.00 0.00 3.68
464 465 5.643379 AACTGAATAATGACGTGGCAAAT 57.357 34.783 0.00 0.00 0.00 2.32
465 466 5.235305 ACTGAATAATGACGTGGCAAATC 57.765 39.130 0.00 0.00 0.00 2.17
466 467 4.201812 ACTGAATAATGACGTGGCAAATCG 60.202 41.667 0.00 0.00 0.00 3.34
467 468 2.755836 ATAATGACGTGGCAAATCGC 57.244 45.000 0.00 0.00 41.28 4.58
468 469 1.732941 TAATGACGTGGCAAATCGCT 58.267 45.000 0.00 0.00 41.91 4.93
469 470 0.168788 AATGACGTGGCAAATCGCTG 59.831 50.000 0.00 0.00 41.91 5.18
470 471 1.647545 ATGACGTGGCAAATCGCTGG 61.648 55.000 0.00 0.00 41.91 4.85
471 472 3.039202 GACGTGGCAAATCGCTGGG 62.039 63.158 0.00 0.00 41.91 4.45
472 473 3.814268 CGTGGCAAATCGCTGGGG 61.814 66.667 0.00 0.00 41.91 4.96
473 474 2.676471 GTGGCAAATCGCTGGGGT 60.676 61.111 0.00 0.00 41.91 4.95
474 475 2.676121 TGGCAAATCGCTGGGGTG 60.676 61.111 0.00 0.00 41.91 4.61
475 476 3.451894 GGCAAATCGCTGGGGTGG 61.452 66.667 0.00 0.00 41.91 4.61
476 477 2.361104 GCAAATCGCTGGGGTGGA 60.361 61.111 0.00 0.00 37.77 4.02
477 478 2.700773 GCAAATCGCTGGGGTGGAC 61.701 63.158 0.00 0.00 37.77 4.02
478 479 1.303236 CAAATCGCTGGGGTGGACA 60.303 57.895 0.00 0.00 0.00 4.02
479 480 0.680921 CAAATCGCTGGGGTGGACAT 60.681 55.000 0.00 0.00 0.00 3.06
480 481 0.039618 AAATCGCTGGGGTGGACATT 59.960 50.000 0.00 0.00 0.00 2.71
481 482 0.680921 AATCGCTGGGGTGGACATTG 60.681 55.000 0.00 0.00 0.00 2.82
482 483 1.852157 ATCGCTGGGGTGGACATTGT 61.852 55.000 0.00 0.00 0.00 2.71
483 484 2.334946 CGCTGGGGTGGACATTGTG 61.335 63.158 0.00 0.00 0.00 3.33
484 485 2.639327 GCTGGGGTGGACATTGTGC 61.639 63.158 0.72 0.72 0.00 4.57
485 486 1.228521 CTGGGGTGGACATTGTGCA 60.229 57.895 6.93 6.93 0.00 4.57
486 487 0.612732 CTGGGGTGGACATTGTGCAT 60.613 55.000 14.33 0.00 36.11 3.96
487 488 0.899253 TGGGGTGGACATTGTGCATG 60.899 55.000 14.33 0.00 36.11 4.06
488 489 0.611618 GGGGTGGACATTGTGCATGA 60.612 55.000 14.33 0.00 36.11 3.07
489 490 1.477553 GGGTGGACATTGTGCATGAT 58.522 50.000 14.33 0.00 36.11 2.45
490 491 1.135527 GGGTGGACATTGTGCATGATG 59.864 52.381 14.33 9.84 36.11 3.07
491 492 2.093890 GGTGGACATTGTGCATGATGA 58.906 47.619 14.33 0.00 36.11 2.92
492 493 2.492881 GGTGGACATTGTGCATGATGAA 59.507 45.455 14.33 0.00 36.11 2.57
493 494 3.056678 GGTGGACATTGTGCATGATGAAA 60.057 43.478 14.33 0.00 36.11 2.69
494 495 4.171005 GTGGACATTGTGCATGATGAAAG 58.829 43.478 14.33 0.00 36.11 2.62
495 496 4.080687 TGGACATTGTGCATGATGAAAGA 58.919 39.130 16.33 0.00 36.24 2.52
496 497 4.523558 TGGACATTGTGCATGATGAAAGAA 59.476 37.500 16.33 0.00 36.24 2.52
497 498 5.186215 TGGACATTGTGCATGATGAAAGAAT 59.814 36.000 16.33 0.00 36.24 2.40
498 499 6.377712 TGGACATTGTGCATGATGAAAGAATA 59.622 34.615 16.33 0.00 36.24 1.75
499 500 6.916387 GGACATTGTGCATGATGAAAGAATAG 59.084 38.462 16.33 0.00 36.24 1.73
500 501 7.201758 GGACATTGTGCATGATGAAAGAATAGA 60.202 37.037 16.33 0.00 36.24 1.98
501 502 7.704271 ACATTGTGCATGATGAAAGAATAGAG 58.296 34.615 16.33 0.00 36.24 2.43
502 503 7.555195 ACATTGTGCATGATGAAAGAATAGAGA 59.445 33.333 16.33 0.00 36.24 3.10
503 504 7.549615 TTGTGCATGATGAAAGAATAGAGAG 57.450 36.000 0.00 0.00 0.00 3.20
504 505 6.881570 TGTGCATGATGAAAGAATAGAGAGA 58.118 36.000 0.00 0.00 0.00 3.10
505 506 7.333323 TGTGCATGATGAAAGAATAGAGAGAA 58.667 34.615 0.00 0.00 0.00 2.87
506 507 7.494952 TGTGCATGATGAAAGAATAGAGAGAAG 59.505 37.037 0.00 0.00 0.00 2.85
507 508 6.482641 TGCATGATGAAAGAATAGAGAGAAGC 59.517 38.462 0.00 0.00 0.00 3.86
508 509 6.346758 GCATGATGAAAGAATAGAGAGAAGCG 60.347 42.308 0.00 0.00 0.00 4.68
509 510 5.595885 TGATGAAAGAATAGAGAGAAGCGG 58.404 41.667 0.00 0.00 0.00 5.52
510 511 4.392921 TGAAAGAATAGAGAGAAGCGGG 57.607 45.455 0.00 0.00 0.00 6.13
511 512 3.133003 TGAAAGAATAGAGAGAAGCGGGG 59.867 47.826 0.00 0.00 0.00 5.73
512 513 2.757894 AGAATAGAGAGAAGCGGGGA 57.242 50.000 0.00 0.00 0.00 4.81
513 514 2.593026 AGAATAGAGAGAAGCGGGGAG 58.407 52.381 0.00 0.00 0.00 4.30
514 515 2.091555 AGAATAGAGAGAAGCGGGGAGT 60.092 50.000 0.00 0.00 0.00 3.85
515 516 3.138653 AGAATAGAGAGAAGCGGGGAGTA 59.861 47.826 0.00 0.00 0.00 2.59
516 517 3.596940 ATAGAGAGAAGCGGGGAGTAA 57.403 47.619 0.00 0.00 0.00 2.24
517 518 1.476477 AGAGAGAAGCGGGGAGTAAC 58.524 55.000 0.00 0.00 0.00 2.50
518 519 1.006162 AGAGAGAAGCGGGGAGTAACT 59.994 52.381 0.00 0.00 0.00 2.24
519 520 1.826096 GAGAGAAGCGGGGAGTAACTT 59.174 52.381 0.00 0.00 0.00 2.66
520 521 1.826096 AGAGAAGCGGGGAGTAACTTC 59.174 52.381 0.00 0.00 39.03 3.01
521 522 1.939980 AGAAGCGGGGAGTAACTTCT 58.060 50.000 0.00 0.00 43.02 2.85
522 523 2.234168 GAGAAGCGGGGAGTAACTTCTT 59.766 50.000 5.66 0.00 46.65 2.52
523 524 3.438183 AGAAGCGGGGAGTAACTTCTTA 58.562 45.455 0.00 0.00 44.91 2.10
524 525 3.836562 AGAAGCGGGGAGTAACTTCTTAA 59.163 43.478 0.00 0.00 44.91 1.85
525 526 3.889520 AGCGGGGAGTAACTTCTTAAG 57.110 47.619 0.00 0.00 0.00 1.85
526 527 3.438183 AGCGGGGAGTAACTTCTTAAGA 58.562 45.455 0.00 0.00 0.00 2.10
527 528 3.836562 AGCGGGGAGTAACTTCTTAAGAA 59.163 43.478 16.85 16.85 0.00 2.52
528 529 4.470304 AGCGGGGAGTAACTTCTTAAGAAT 59.530 41.667 18.02 7.41 33.01 2.40
529 530 4.571176 GCGGGGAGTAACTTCTTAAGAATG 59.429 45.833 18.02 13.91 33.01 2.67
530 531 5.116882 CGGGGAGTAACTTCTTAAGAATGG 58.883 45.833 18.02 10.22 33.01 3.16
531 532 5.338137 CGGGGAGTAACTTCTTAAGAATGGT 60.338 44.000 18.02 10.84 33.01 3.55
532 533 6.127253 CGGGGAGTAACTTCTTAAGAATGGTA 60.127 42.308 18.02 12.04 33.01 3.25
533 534 7.273712 GGGGAGTAACTTCTTAAGAATGGTAG 58.726 42.308 18.02 8.78 33.01 3.18
534 535 6.762187 GGGAGTAACTTCTTAAGAATGGTAGC 59.238 42.308 18.02 9.75 33.01 3.58
535 536 7.364851 GGGAGTAACTTCTTAAGAATGGTAGCT 60.365 40.741 18.02 13.48 33.01 3.32
536 537 8.041919 GGAGTAACTTCTTAAGAATGGTAGCTT 58.958 37.037 18.02 6.36 33.01 3.74
537 538 8.779354 AGTAACTTCTTAAGAATGGTAGCTTG 57.221 34.615 18.02 6.13 33.01 4.01
538 539 7.824779 AGTAACTTCTTAAGAATGGTAGCTTGG 59.175 37.037 18.02 5.46 33.01 3.61
539 540 6.374417 ACTTCTTAAGAATGGTAGCTTGGA 57.626 37.500 18.02 0.00 33.01 3.53
540 541 6.963322 ACTTCTTAAGAATGGTAGCTTGGAT 58.037 36.000 18.02 0.00 33.01 3.41
541 542 7.406104 ACTTCTTAAGAATGGTAGCTTGGATT 58.594 34.615 18.02 0.00 33.01 3.01
542 543 7.890655 ACTTCTTAAGAATGGTAGCTTGGATTT 59.109 33.333 18.02 0.00 33.01 2.17
543 544 8.650143 TTCTTAAGAATGGTAGCTTGGATTTT 57.350 30.769 13.99 0.00 0.00 1.82
544 545 8.055279 TCTTAAGAATGGTAGCTTGGATTTTG 57.945 34.615 1.68 0.00 0.00 2.44
545 546 7.888021 TCTTAAGAATGGTAGCTTGGATTTTGA 59.112 33.333 1.68 0.00 0.00 2.69
546 547 6.916360 AAGAATGGTAGCTTGGATTTTGAA 57.084 33.333 0.00 0.00 0.00 2.69
547 548 6.521151 AGAATGGTAGCTTGGATTTTGAAG 57.479 37.500 0.00 0.00 0.00 3.02
548 549 6.248433 AGAATGGTAGCTTGGATTTTGAAGA 58.752 36.000 0.00 0.00 0.00 2.87
549 550 6.376581 AGAATGGTAGCTTGGATTTTGAAGAG 59.623 38.462 0.00 0.00 0.00 2.85
550 551 4.985538 TGGTAGCTTGGATTTTGAAGAGT 58.014 39.130 0.00 0.00 0.00 3.24
551 552 4.761739 TGGTAGCTTGGATTTTGAAGAGTG 59.238 41.667 0.00 0.00 0.00 3.51
552 553 4.762251 GGTAGCTTGGATTTTGAAGAGTGT 59.238 41.667 0.00 0.00 0.00 3.55
553 554 4.843220 AGCTTGGATTTTGAAGAGTGTG 57.157 40.909 0.00 0.00 0.00 3.82
554 555 3.571401 AGCTTGGATTTTGAAGAGTGTGG 59.429 43.478 0.00 0.00 0.00 4.17
555 556 3.569701 GCTTGGATTTTGAAGAGTGTGGA 59.430 43.478 0.00 0.00 0.00 4.02
556 557 4.037923 GCTTGGATTTTGAAGAGTGTGGAA 59.962 41.667 0.00 0.00 0.00 3.53
557 558 5.279156 GCTTGGATTTTGAAGAGTGTGGAAT 60.279 40.000 0.00 0.00 0.00 3.01
558 559 5.710513 TGGATTTTGAAGAGTGTGGAATG 57.289 39.130 0.00 0.00 0.00 2.67
559 560 4.523943 TGGATTTTGAAGAGTGTGGAATGG 59.476 41.667 0.00 0.00 0.00 3.16
560 561 4.766891 GGATTTTGAAGAGTGTGGAATGGA 59.233 41.667 0.00 0.00 0.00 3.41
561 562 5.105997 GGATTTTGAAGAGTGTGGAATGGAG 60.106 44.000 0.00 0.00 0.00 3.86
562 563 3.423539 TTGAAGAGTGTGGAATGGAGG 57.576 47.619 0.00 0.00 0.00 4.30
563 564 2.338809 TGAAGAGTGTGGAATGGAGGT 58.661 47.619 0.00 0.00 0.00 3.85
564 565 2.038952 TGAAGAGTGTGGAATGGAGGTG 59.961 50.000 0.00 0.00 0.00 4.00
565 566 0.987294 AGAGTGTGGAATGGAGGTGG 59.013 55.000 0.00 0.00 0.00 4.61
566 567 0.693049 GAGTGTGGAATGGAGGTGGT 59.307 55.000 0.00 0.00 0.00 4.16
567 568 1.906574 GAGTGTGGAATGGAGGTGGTA 59.093 52.381 0.00 0.00 0.00 3.25
568 569 1.909302 AGTGTGGAATGGAGGTGGTAG 59.091 52.381 0.00 0.00 0.00 3.18
569 570 1.628846 GTGTGGAATGGAGGTGGTAGT 59.371 52.381 0.00 0.00 0.00 2.73
570 571 2.039879 GTGTGGAATGGAGGTGGTAGTT 59.960 50.000 0.00 0.00 0.00 2.24
571 572 2.714250 TGTGGAATGGAGGTGGTAGTTT 59.286 45.455 0.00 0.00 0.00 2.66
572 573 3.139397 TGTGGAATGGAGGTGGTAGTTTT 59.861 43.478 0.00 0.00 0.00 2.43
573 574 4.149598 GTGGAATGGAGGTGGTAGTTTTT 58.850 43.478 0.00 0.00 0.00 1.94
610 611 5.532664 ACTCGACTCTTTGAGTAGGTTTT 57.467 39.130 0.00 0.00 43.75 2.43
611 612 5.915175 ACTCGACTCTTTGAGTAGGTTTTT 58.085 37.500 0.00 0.00 43.75 1.94
704 705 4.893424 TTTTAGACAAACTCGCAAAGCT 57.107 36.364 0.00 0.00 0.00 3.74
705 706 4.893424 TTTAGACAAACTCGCAAAGCTT 57.107 36.364 0.00 0.00 0.00 3.74
706 707 4.893424 TTAGACAAACTCGCAAAGCTTT 57.107 36.364 5.69 5.69 0.00 3.51
707 708 3.782889 AGACAAACTCGCAAAGCTTTT 57.217 38.095 9.53 0.00 0.00 2.27
708 709 4.893424 AGACAAACTCGCAAAGCTTTTA 57.107 36.364 9.53 0.00 0.00 1.52
709 710 5.438761 AGACAAACTCGCAAAGCTTTTAT 57.561 34.783 9.53 0.00 0.00 1.40
710 711 5.831997 AGACAAACTCGCAAAGCTTTTATT 58.168 33.333 9.53 0.00 0.00 1.40
711 712 5.915196 AGACAAACTCGCAAAGCTTTTATTC 59.085 36.000 9.53 0.00 0.00 1.75
712 713 5.587289 ACAAACTCGCAAAGCTTTTATTCA 58.413 33.333 9.53 0.00 0.00 2.57
713 714 5.458779 ACAAACTCGCAAAGCTTTTATTCAC 59.541 36.000 9.53 0.00 0.00 3.18
714 715 4.160736 ACTCGCAAAGCTTTTATTCACC 57.839 40.909 9.53 0.00 0.00 4.02
715 716 3.057526 ACTCGCAAAGCTTTTATTCACCC 60.058 43.478 9.53 0.00 0.00 4.61
716 717 2.095466 TCGCAAAGCTTTTATTCACCCG 60.095 45.455 9.53 2.97 0.00 5.28
717 718 2.351350 CGCAAAGCTTTTATTCACCCGT 60.351 45.455 9.53 0.00 0.00 5.28
718 719 3.242518 GCAAAGCTTTTATTCACCCGTC 58.757 45.455 9.53 0.00 0.00 4.79
719 720 3.305064 GCAAAGCTTTTATTCACCCGTCA 60.305 43.478 9.53 0.00 0.00 4.35
720 721 4.226761 CAAAGCTTTTATTCACCCGTCAC 58.773 43.478 9.53 0.00 0.00 3.67
721 722 3.134574 AGCTTTTATTCACCCGTCACA 57.865 42.857 0.00 0.00 0.00 3.58
722 723 3.482436 AGCTTTTATTCACCCGTCACAA 58.518 40.909 0.00 0.00 0.00 3.33
723 724 4.079253 AGCTTTTATTCACCCGTCACAAT 58.921 39.130 0.00 0.00 0.00 2.71
724 725 4.082787 AGCTTTTATTCACCCGTCACAATG 60.083 41.667 0.00 0.00 0.00 2.82
725 726 4.320935 GCTTTTATTCACCCGTCACAATGT 60.321 41.667 0.00 0.00 0.00 2.71
726 727 5.768317 CTTTTATTCACCCGTCACAATGTT 58.232 37.500 0.00 0.00 0.00 2.71
727 728 5.776173 TTTATTCACCCGTCACAATGTTT 57.224 34.783 0.00 0.00 0.00 2.83
728 729 6.879276 TTTATTCACCCGTCACAATGTTTA 57.121 33.333 0.00 0.00 0.00 2.01
729 730 4.759516 ATTCACCCGTCACAATGTTTAC 57.240 40.909 0.00 0.00 0.00 2.01
730 731 3.195471 TCACCCGTCACAATGTTTACA 57.805 42.857 0.00 0.00 0.00 2.41
731 732 3.542648 TCACCCGTCACAATGTTTACAA 58.457 40.909 0.00 0.00 0.00 2.41
732 733 3.562141 TCACCCGTCACAATGTTTACAAG 59.438 43.478 0.00 0.00 0.00 3.16
733 734 2.882137 ACCCGTCACAATGTTTACAAGG 59.118 45.455 0.00 0.00 0.00 3.61
734 735 3.142951 CCCGTCACAATGTTTACAAGGA 58.857 45.455 0.00 0.00 0.00 3.36
735 736 3.058501 CCCGTCACAATGTTTACAAGGAC 60.059 47.826 0.00 0.00 0.00 3.85
736 737 3.562141 CCGTCACAATGTTTACAAGGACA 59.438 43.478 0.00 0.00 0.00 4.02
737 738 4.035792 CCGTCACAATGTTTACAAGGACAA 59.964 41.667 0.00 0.00 0.00 3.18
738 739 5.449314 CCGTCACAATGTTTACAAGGACAAA 60.449 40.000 0.00 0.00 0.00 2.83
739 740 6.030849 CGTCACAATGTTTACAAGGACAAAA 58.969 36.000 0.00 0.00 0.00 2.44
740 741 6.695278 CGTCACAATGTTTACAAGGACAAAAT 59.305 34.615 0.00 0.00 0.00 1.82
741 742 7.221838 CGTCACAATGTTTACAAGGACAAAATT 59.778 33.333 0.00 0.00 0.00 1.82
742 743 8.539674 GTCACAATGTTTACAAGGACAAAATTC 58.460 33.333 0.00 0.00 0.00 2.17
743 744 8.253810 TCACAATGTTTACAAGGACAAAATTCA 58.746 29.630 0.00 0.00 0.00 2.57
744 745 8.877779 CACAATGTTTACAAGGACAAAATTCAA 58.122 29.630 0.00 0.00 0.00 2.69
745 746 9.442047 ACAATGTTTACAAGGACAAAATTCAAA 57.558 25.926 0.00 0.00 0.00 2.69
753 754 8.212317 ACAAGGACAAAATTCAAATTTTCTGG 57.788 30.769 9.84 5.97 44.38 3.86
754 755 8.046107 ACAAGGACAAAATTCAAATTTTCTGGA 58.954 29.630 9.84 0.00 44.38 3.86
755 756 9.059260 CAAGGACAAAATTCAAATTTTCTGGAT 57.941 29.630 9.84 0.00 44.38 3.41
756 757 8.611654 AGGACAAAATTCAAATTTTCTGGATG 57.388 30.769 9.84 3.12 44.38 3.51
757 758 8.431222 AGGACAAAATTCAAATTTTCTGGATGA 58.569 29.630 9.84 0.00 44.38 2.92
758 759 8.498358 GGACAAAATTCAAATTTTCTGGATGAC 58.502 33.333 9.84 1.59 44.38 3.06
759 760 8.382030 ACAAAATTCAAATTTTCTGGATGACC 57.618 30.769 9.84 0.00 44.38 4.02
760 761 8.212995 ACAAAATTCAAATTTTCTGGATGACCT 58.787 29.630 9.84 0.00 44.38 3.85
761 762 9.709495 CAAAATTCAAATTTTCTGGATGACCTA 57.291 29.630 9.84 0.00 44.38 3.08
763 764 9.710900 AAATTCAAATTTTCTGGATGACCTAAC 57.289 29.630 0.00 0.00 35.16 2.34
764 765 6.834168 TCAAATTTTCTGGATGACCTAACC 57.166 37.500 0.00 0.00 37.04 2.85
765 766 6.310941 TCAAATTTTCTGGATGACCTAACCA 58.689 36.000 0.00 0.00 37.04 3.67
766 767 6.780031 TCAAATTTTCTGGATGACCTAACCAA 59.220 34.615 0.00 0.00 37.04 3.67
767 768 7.288852 TCAAATTTTCTGGATGACCTAACCAAA 59.711 33.333 0.00 0.00 37.04 3.28
768 769 6.590234 ATTTTCTGGATGACCTAACCAAAC 57.410 37.500 0.00 0.00 37.04 2.93
769 770 4.715534 TTCTGGATGACCTAACCAAACA 57.284 40.909 0.00 0.00 37.04 2.83
770 771 4.927267 TCTGGATGACCTAACCAAACAT 57.073 40.909 0.00 0.00 37.04 2.71
771 772 4.588899 TCTGGATGACCTAACCAAACATG 58.411 43.478 0.00 0.00 37.04 3.21
772 773 4.288366 TCTGGATGACCTAACCAAACATGA 59.712 41.667 0.00 0.00 37.04 3.07
773 774 4.331968 TGGATGACCTAACCAAACATGAC 58.668 43.478 0.00 0.00 37.04 3.06
774 775 3.374058 GGATGACCTAACCAAACATGACG 59.626 47.826 0.00 0.00 0.00 4.35
775 776 2.773487 TGACCTAACCAAACATGACGG 58.227 47.619 0.00 0.00 0.00 4.79
776 777 1.467342 GACCTAACCAAACATGACGGC 59.533 52.381 0.00 0.00 0.00 5.68
777 778 0.808755 CCTAACCAAACATGACGGCC 59.191 55.000 0.00 0.00 0.00 6.13
778 779 1.529226 CTAACCAAACATGACGGCCA 58.471 50.000 2.24 0.00 0.00 5.36
779 780 1.883275 CTAACCAAACATGACGGCCAA 59.117 47.619 2.24 0.00 0.00 4.52
780 781 1.115467 AACCAAACATGACGGCCAAA 58.885 45.000 2.24 0.00 0.00 3.28
781 782 1.115467 ACCAAACATGACGGCCAAAA 58.885 45.000 2.24 0.00 0.00 2.44
782 783 1.202475 ACCAAACATGACGGCCAAAAC 60.202 47.619 2.24 0.00 0.00 2.43
783 784 1.496934 CAAACATGACGGCCAAAACC 58.503 50.000 2.24 0.00 0.00 3.27
784 785 0.391228 AAACATGACGGCCAAAACCC 59.609 50.000 2.24 0.00 0.00 4.11
785 786 0.757188 AACATGACGGCCAAAACCCA 60.757 50.000 2.24 0.00 0.00 4.51
786 787 1.178534 ACATGACGGCCAAAACCCAG 61.179 55.000 2.24 0.00 0.00 4.45
787 788 1.606313 ATGACGGCCAAAACCCAGG 60.606 57.895 2.24 0.00 0.00 4.45
788 789 2.989253 GACGGCCAAAACCCAGGG 60.989 66.667 2.85 2.85 0.00 4.45
789 790 3.501040 GACGGCCAAAACCCAGGGA 62.501 63.158 14.54 0.00 0.00 4.20
790 791 2.037208 CGGCCAAAACCCAGGGAT 59.963 61.111 14.54 0.00 0.00 3.85
791 792 1.304952 CGGCCAAAACCCAGGGATA 59.695 57.895 14.54 0.00 0.00 2.59
792 793 0.323908 CGGCCAAAACCCAGGGATAA 60.324 55.000 14.54 0.00 0.00 1.75
793 794 1.893210 CGGCCAAAACCCAGGGATAAA 60.893 52.381 14.54 0.00 0.00 1.40
794 795 1.831106 GGCCAAAACCCAGGGATAAAG 59.169 52.381 14.54 0.00 0.00 1.85
795 796 1.207089 GCCAAAACCCAGGGATAAAGC 59.793 52.381 14.54 5.60 0.00 3.51
796 797 2.534990 CCAAAACCCAGGGATAAAGCA 58.465 47.619 14.54 0.00 0.00 3.91
797 798 3.106827 CCAAAACCCAGGGATAAAGCAT 58.893 45.455 14.54 0.00 0.00 3.79
798 799 3.118665 CCAAAACCCAGGGATAAAGCATG 60.119 47.826 14.54 0.00 0.00 4.06
799 800 1.780503 AACCCAGGGATAAAGCATGC 58.219 50.000 14.54 10.51 0.00 4.06
800 801 0.929244 ACCCAGGGATAAAGCATGCT 59.071 50.000 16.30 16.30 0.00 3.79
801 802 1.288932 ACCCAGGGATAAAGCATGCTT 59.711 47.619 27.21 27.21 37.98 3.91
802 803 2.292455 ACCCAGGGATAAAGCATGCTTT 60.292 45.455 39.21 39.21 46.56 3.51
803 804 2.101917 CCCAGGGATAAAGCATGCTTTG 59.898 50.000 42.11 29.77 44.84 2.77
817 818 5.088141 CATGCTTTGCTATTAACGGAGAG 57.912 43.478 0.00 0.00 0.00 3.20
881 882 1.398692 TCAAAAGTCAGCCCACCAAC 58.601 50.000 0.00 0.00 0.00 3.77
928 929 2.066999 GGCTCATCCCCGTCTTCCT 61.067 63.158 0.00 0.00 0.00 3.36
929 930 1.443828 GCTCATCCCCGTCTTCCTC 59.556 63.158 0.00 0.00 0.00 3.71
930 931 2.034048 GCTCATCCCCGTCTTCCTCC 62.034 65.000 0.00 0.00 0.00 4.30
956 957 1.005569 CCTAAACCTCCCACCTTTCCC 59.994 57.143 0.00 0.00 0.00 3.97
975 976 3.748021 GTTGTCAGCAACGCTAACC 57.252 52.632 0.00 0.00 44.40 2.85
976 977 0.237498 GTTGTCAGCAACGCTAACCC 59.763 55.000 0.00 0.00 44.40 4.11
977 978 0.887387 TTGTCAGCAACGCTAACCCC 60.887 55.000 0.00 0.00 36.40 4.95
978 979 2.038837 GTCAGCAACGCTAACCCCC 61.039 63.158 0.00 0.00 36.40 5.40
981 982 2.281900 GCAACGCTAACCCCCACA 60.282 61.111 0.00 0.00 0.00 4.17
986 987 2.355115 GCTAACCCCCACACCCAG 59.645 66.667 0.00 0.00 0.00 4.45
1049 1050 2.696504 CCCCTTCCCCTTCCCCTC 60.697 72.222 0.00 0.00 0.00 4.30
1051 1052 2.127297 CCTTCCCCTTCCCCTCCA 59.873 66.667 0.00 0.00 0.00 3.86
1057 1058 2.692741 CCTTCCCCTCCACCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
1058 1059 3.083997 CTTCCCCTCCACCTCCCG 61.084 72.222 0.00 0.00 0.00 5.14
1191 1192 4.131088 GACTCGTCCCACGGCCTC 62.131 72.222 0.00 0.00 42.81 4.70
1192 1193 4.988716 ACTCGTCCCACGGCCTCA 62.989 66.667 0.00 0.00 42.81 3.86
1193 1194 3.691342 CTCGTCCCACGGCCTCAA 61.691 66.667 0.00 0.00 42.81 3.02
1194 1195 3.934391 CTCGTCCCACGGCCTCAAC 62.934 68.421 0.00 0.00 42.81 3.18
1957 1958 2.959484 GCTGCAGGGCCTCAGTGTA 61.959 63.158 24.42 7.72 33.09 2.90
2077 2078 2.528708 CTCGGCCTAGAGGGGGAT 59.471 66.667 0.00 0.00 34.74 3.85
2233 2234 1.733399 GGACCTCTTCGTGTGCGTC 60.733 63.158 0.00 0.00 39.49 5.19
2419 2420 2.988839 GCCCTCCAAGGACATGGCT 61.989 63.158 0.00 0.00 37.67 4.75
2428 2429 3.355378 CAAGGACATGGCTGTTATTGGA 58.645 45.455 0.00 0.00 35.14 3.53
2488 2489 1.804151 GTCAAAGCAATGTACGAGGCA 59.196 47.619 0.00 0.00 0.00 4.75
2517 2518 2.897350 GACTGGCATGGTAGGCGC 60.897 66.667 0.00 0.00 36.77 6.53
2590 2591 1.557371 TCAGGTGATTCAATGGCCGTA 59.443 47.619 0.00 0.00 0.00 4.02
2926 2927 0.109153 AGAAGGCTGATGTGCACACA 59.891 50.000 24.37 19.96 46.44 3.72
2944 2945 5.057149 CACACACTTAAGTACCAGCTTTCT 58.943 41.667 8.04 0.00 0.00 2.52
3016 3017 0.035630 CCTCTGGACTGCTTGGAAGG 60.036 60.000 0.00 0.00 0.00 3.46
3199 3200 0.318441 CACCGGAAGCTCTGTCAAGA 59.682 55.000 9.46 0.00 0.00 3.02
3263 3269 6.183360 TGTCACTGGTATGATACTTTCTCTCG 60.183 42.308 2.24 0.00 0.00 4.04
3265 3271 5.974158 CACTGGTATGATACTTTCTCTCGTG 59.026 44.000 2.24 0.00 0.00 4.35
3273 3279 3.372660 ACTTTCTCTCGTGGTTCTCAC 57.627 47.619 0.00 0.00 42.74 3.51
3299 3305 4.202419 ACACACTGCCTCCACAAAGTTATA 60.202 41.667 0.00 0.00 0.00 0.98
3327 3334 8.344098 TGGTTTCAAACTGTTAATTTACCGTAG 58.656 33.333 0.00 0.00 0.00 3.51
3490 3497 7.750229 AAGTGATGTTGTTATGTTGACATCT 57.250 32.000 14.20 0.00 45.29 2.90
3581 3589 5.841957 AAACAAATGAGTGAGCTGAAGTT 57.158 34.783 0.00 0.00 0.00 2.66
3784 3792 1.813753 GGCGAGCAAGGCGATGTTA 60.814 57.895 0.00 0.00 0.00 2.41
3800 3808 9.826574 AGGCGATGTTATTGTAAGTTTTCTATA 57.173 29.630 0.00 0.00 0.00 1.31
3861 3869 5.723672 AGTCACCGTATAATCCTATGTGG 57.276 43.478 0.00 0.00 37.10 4.17
3903 3911 3.937814 ACACTTGAATCTCCATGCGTAA 58.062 40.909 0.00 0.00 0.00 3.18
3963 3971 5.229423 GCTCTTGTCAGATTCCAGCTATAG 58.771 45.833 0.00 0.00 0.00 1.31
3965 3973 6.398234 TCTTGTCAGATTCCAGCTATAGTC 57.602 41.667 0.84 0.00 0.00 2.59
4026 4034 6.734104 AGAATGTAGAACATGCTCAGAAAC 57.266 37.500 0.00 0.00 40.45 2.78
4061 4069 2.167487 TGATGTGTTACTATCTGCGGCA 59.833 45.455 1.29 1.29 0.00 5.69
4110 4118 6.949352 AGGAGTTGCATTAATGTTATGAGG 57.051 37.500 16.61 0.00 0.00 3.86
4112 4120 6.319658 AGGAGTTGCATTAATGTTATGAGGTG 59.680 38.462 16.61 0.00 0.00 4.00
4113 4121 6.318648 GGAGTTGCATTAATGTTATGAGGTGA 59.681 38.462 16.61 0.00 0.00 4.02
4114 4122 7.013655 GGAGTTGCATTAATGTTATGAGGTGAT 59.986 37.037 16.61 0.00 0.00 3.06
4116 4124 9.578576 AGTTGCATTAATGTTATGAGGTGATAT 57.421 29.630 16.61 0.00 0.00 1.63
4156 4229 8.677300 AGTATTACATTTTTACTGCTGACCATG 58.323 33.333 0.00 0.00 0.00 3.66
4182 4255 1.064166 CCTGTTGGCCCATCTTGATCT 60.064 52.381 0.00 0.00 0.00 2.75
4375 4466 5.452078 TCTAAATCAGTTTTGCCCTGTTG 57.548 39.130 0.00 0.00 0.00 3.33
4455 4547 1.073923 ACACTTTGGCCTTACCTCTGG 59.926 52.381 3.32 0.00 40.22 3.86
4542 4634 2.698803 TCCAGTCCAATTCGTGTGATG 58.301 47.619 0.00 0.00 0.00 3.07
4550 4642 3.751175 CCAATTCGTGTGATGTACCTTGT 59.249 43.478 0.00 0.00 0.00 3.16
4601 4694 2.824071 CTTGCCCTGACCGCATTTGC 62.824 60.000 0.00 0.00 35.83 3.68
4667 4760 3.181495 TGTCGTTTCACATGAAAACCACC 60.181 43.478 8.58 9.59 44.58 4.61
4725 4824 2.664402 ACCAGAAAGCCACTGATGTT 57.336 45.000 0.00 0.00 37.54 2.71
4737 4836 1.637553 ACTGATGTTCCCAAGATGGCT 59.362 47.619 0.00 0.00 35.79 4.75
4794 4893 4.837896 GCTTTTGCTCAAGGTTCTAACT 57.162 40.909 0.00 0.00 43.35 2.24
4799 4898 2.367567 TGCTCAAGGTTCTAACTTCGGT 59.632 45.455 0.00 0.00 0.00 4.69
4824 4923 4.511826 GCTGACTGCTAACAAACAACTAGT 59.488 41.667 0.00 0.00 38.95 2.57
4908 5007 8.625786 AAGTTATTTTACGGTACATTGAAGGT 57.374 30.769 0.00 0.00 0.00 3.50
4951 5050 2.791383 TTGCCCAATGTCAGTTTTCG 57.209 45.000 0.00 0.00 0.00 3.46
5020 5119 3.814625 TGTGAAGTGTGCTACAATCCAA 58.185 40.909 0.00 0.00 0.00 3.53
5025 5124 2.108250 AGTGTGCTACAATCCAAAGGGT 59.892 45.455 0.00 0.00 34.93 4.34
5066 5165 2.507854 CGGAGGCGGGATGTACCAT 61.508 63.158 0.00 0.00 41.20 3.55
5139 5239 8.038351 TGTCTGTATAAACTAGTAATTGCAGCA 58.962 33.333 0.00 0.00 0.00 4.41
5140 5240 9.046296 GTCTGTATAAACTAGTAATTGCAGCAT 57.954 33.333 0.00 0.00 0.00 3.79
5220 5321 0.947244 GGATAGGACCTTTGCATGCG 59.053 55.000 14.09 0.35 0.00 4.73
5257 5358 2.716017 CCTCTCTCTCCCACCGCAC 61.716 68.421 0.00 0.00 0.00 5.34
5272 5374 1.267334 CCGCACGACGTCCATTAAATG 60.267 52.381 10.58 0.00 41.42 2.32
5375 5480 3.181500 GCGACAAGACCTTTGAAACAAGT 60.181 43.478 0.00 0.00 0.00 3.16
5462 5567 4.566545 TTCACAAACATCAGTTTCGCAT 57.433 36.364 0.00 0.00 45.80 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.982701 GTTGCTGCTGCCCCAGGT 62.983 66.667 13.47 0.00 38.71 4.00
6 7 4.043200 GGTTCGGTTGCTGCTGCC 62.043 66.667 13.47 1.99 38.71 4.85
7 8 2.970974 GAGGTTCGGTTGCTGCTGC 61.971 63.158 8.89 8.89 40.20 5.25
8 9 2.671177 CGAGGTTCGGTTGCTGCTG 61.671 63.158 0.00 0.00 36.00 4.41
9 10 2.357517 CGAGGTTCGGTTGCTGCT 60.358 61.111 0.00 0.00 36.00 4.24
10 11 4.090057 GCGAGGTTCGGTTGCTGC 62.090 66.667 0.34 0.00 40.84 5.25
11 12 3.423154 GGCGAGGTTCGGTTGCTG 61.423 66.667 0.34 0.00 40.84 4.41
12 13 4.699522 GGGCGAGGTTCGGTTGCT 62.700 66.667 0.34 0.00 40.84 3.91
14 15 2.742372 CTGGGCGAGGTTCGGTTG 60.742 66.667 0.34 0.00 40.84 3.77
15 16 3.236003 GACTGGGCGAGGTTCGGTT 62.236 63.158 0.51 0.00 40.84 4.44
16 17 3.692406 GACTGGGCGAGGTTCGGT 61.692 66.667 0.51 0.00 40.84 4.69
17 18 4.452733 GGACTGGGCGAGGTTCGG 62.453 72.222 0.51 0.00 40.84 4.30
18 19 3.691342 TGGACTGGGCGAGGTTCG 61.691 66.667 0.51 0.00 43.89 3.95
19 20 2.047179 GTGGACTGGGCGAGGTTC 60.047 66.667 0.51 0.00 0.00 3.62
20 21 4.003788 CGTGGACTGGGCGAGGTT 62.004 66.667 0.51 0.00 0.00 3.50
22 23 4.436998 GACGTGGACTGGGCGAGG 62.437 72.222 0.00 0.00 0.00 4.63
23 24 4.436998 GGACGTGGACTGGGCGAG 62.437 72.222 0.00 0.00 0.00 5.03
26 27 4.394712 CTGGGACGTGGACTGGGC 62.395 72.222 0.00 0.00 0.00 5.36
27 28 4.394712 GCTGGGACGTGGACTGGG 62.395 72.222 0.00 0.00 0.00 4.45
28 29 4.742201 CGCTGGGACGTGGACTGG 62.742 72.222 0.00 0.00 0.00 4.00
36 37 3.449227 TACCTGAGCGCTGGGACG 61.449 66.667 26.52 8.63 37.43 4.79
37 38 2.184579 GTACCTGAGCGCTGGGAC 59.815 66.667 26.52 20.52 39.43 4.46
38 39 3.075005 GGTACCTGAGCGCTGGGA 61.075 66.667 26.52 13.36 37.43 4.37
39 40 4.514577 CGGTACCTGAGCGCTGGG 62.515 72.222 18.48 19.75 43.00 4.45
66 67 1.228657 GCTGTCTGTTTCGGACCACC 61.229 60.000 6.31 0.00 38.85 4.61
67 68 0.531974 TGCTGTCTGTTTCGGACCAC 60.532 55.000 6.31 0.26 38.85 4.16
68 69 0.249868 CTGCTGTCTGTTTCGGACCA 60.250 55.000 6.31 0.00 38.85 4.02
69 70 0.033504 TCTGCTGTCTGTTTCGGACC 59.966 55.000 6.31 0.00 38.85 4.46
70 71 1.140816 GTCTGCTGTCTGTTTCGGAC 58.859 55.000 2.20 2.20 39.93 4.79
71 72 0.750249 TGTCTGCTGTCTGTTTCGGA 59.250 50.000 0.00 0.00 0.00 4.55
72 73 1.143305 CTGTCTGCTGTCTGTTTCGG 58.857 55.000 0.00 0.00 0.00 4.30
73 74 0.510359 GCTGTCTGCTGTCTGTTTCG 59.490 55.000 0.00 0.00 38.95 3.46
74 75 0.510359 CGCTGTCTGCTGTCTGTTTC 59.490 55.000 0.00 0.00 40.11 2.78
75 76 0.882042 CCGCTGTCTGCTGTCTGTTT 60.882 55.000 0.00 0.00 40.11 2.83
76 77 1.301244 CCGCTGTCTGCTGTCTGTT 60.301 57.895 0.00 0.00 40.11 3.16
77 78 2.341543 CCGCTGTCTGCTGTCTGT 59.658 61.111 0.00 0.00 40.11 3.41
78 79 3.117171 GCCGCTGTCTGCTGTCTG 61.117 66.667 0.00 0.00 40.11 3.51
79 80 4.385405 GGCCGCTGTCTGCTGTCT 62.385 66.667 0.00 0.00 40.11 3.41
80 81 4.687215 TGGCCGCTGTCTGCTGTC 62.687 66.667 0.00 0.00 40.11 3.51
81 82 4.694233 CTGGCCGCTGTCTGCTGT 62.694 66.667 0.00 0.00 40.11 4.40
102 103 4.758251 TCCACCATCGTGCGCTGG 62.758 66.667 9.73 10.81 38.79 4.85
103 104 3.490759 GTCCACCATCGTGCGCTG 61.491 66.667 9.73 0.40 38.79 5.18
129 130 3.710722 AGCCCCCTCACTTGCTCG 61.711 66.667 0.00 0.00 0.00 5.03
130 131 2.045536 CAGCCCCCTCACTTGCTC 60.046 66.667 0.00 0.00 30.08 4.26
131 132 2.530151 TCAGCCCCCTCACTTGCT 60.530 61.111 0.00 0.00 33.52 3.91
132 133 2.360475 GTCAGCCCCCTCACTTGC 60.360 66.667 0.00 0.00 0.00 4.01
133 134 1.856539 ATGGTCAGCCCCCTCACTTG 61.857 60.000 0.00 0.00 0.00 3.16
134 135 1.542375 ATGGTCAGCCCCCTCACTT 60.542 57.895 0.00 0.00 0.00 3.16
135 136 1.997874 GATGGTCAGCCCCCTCACT 60.998 63.158 0.00 0.00 0.00 3.41
136 137 2.592308 GATGGTCAGCCCCCTCAC 59.408 66.667 0.00 0.00 0.00 3.51
137 138 3.083349 CGATGGTCAGCCCCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
138 139 4.554036 GCGATGGTCAGCCCCCTC 62.554 72.222 0.00 0.00 0.00 4.30
145 146 4.794439 TCACCGCGCGATGGTCAG 62.794 66.667 34.63 15.43 37.72 3.51
146 147 4.794439 CTCACCGCGCGATGGTCA 62.794 66.667 34.63 7.82 37.72 4.02
166 167 4.463879 CCTCCAGCCCAGCGACAG 62.464 72.222 0.00 0.00 0.00 3.51
171 172 3.883549 GATCCCCTCCAGCCCAGC 61.884 72.222 0.00 0.00 0.00 4.85
172 173 3.174265 GGATCCCCTCCAGCCCAG 61.174 72.222 0.00 0.00 44.26 4.45
185 186 2.031163 CTCCCGCGGGATTGGATC 59.969 66.667 45.15 0.00 44.24 3.36
186 187 3.560251 CCTCCCGCGGGATTGGAT 61.560 66.667 45.15 0.00 44.24 3.41
199 200 4.767255 CACTGCTGTCGGCCCTCC 62.767 72.222 0.00 0.00 40.92 4.30
205 206 4.457496 ATCCCGCACTGCTGTCGG 62.457 66.667 19.98 19.98 42.58 4.79
206 207 3.190849 CATCCCGCACTGCTGTCG 61.191 66.667 0.00 1.21 0.00 4.35
207 208 3.503363 GCATCCCGCACTGCTGTC 61.503 66.667 0.00 0.00 41.79 3.51
229 230 3.775654 CTCCACCACCTCCTCCGC 61.776 72.222 0.00 0.00 0.00 5.54
230 231 3.077556 CCTCCACCACCTCCTCCG 61.078 72.222 0.00 0.00 0.00 4.63
231 232 3.403558 GCCTCCACCACCTCCTCC 61.404 72.222 0.00 0.00 0.00 4.30
232 233 2.607750 TGCCTCCACCACCTCCTC 60.608 66.667 0.00 0.00 0.00 3.71
233 234 2.608988 CTGCCTCCACCACCTCCT 60.609 66.667 0.00 0.00 0.00 3.69
234 235 2.930562 ACTGCCTCCACCACCTCC 60.931 66.667 0.00 0.00 0.00 4.30
235 236 2.665603 GACTGCCTCCACCACCTC 59.334 66.667 0.00 0.00 0.00 3.85
236 237 3.314331 CGACTGCCTCCACCACCT 61.314 66.667 0.00 0.00 0.00 4.00
237 238 4.394712 CCGACTGCCTCCACCACC 62.395 72.222 0.00 0.00 0.00 4.61
238 239 4.394712 CCCGACTGCCTCCACCAC 62.395 72.222 0.00 0.00 0.00 4.16
241 242 4.767255 CTGCCCGACTGCCTCCAC 62.767 72.222 0.00 0.00 0.00 4.02
248 249 4.504916 CTCTCCGCTGCCCGACTG 62.505 72.222 0.00 0.00 40.02 3.51
255 256 2.479412 CTATACCGCCTCTCCGCTGC 62.479 65.000 0.00 0.00 0.00 5.25
256 257 1.581954 CTATACCGCCTCTCCGCTG 59.418 63.158 0.00 0.00 0.00 5.18
257 258 1.604023 CCTATACCGCCTCTCCGCT 60.604 63.158 0.00 0.00 0.00 5.52
258 259 2.963371 CCTATACCGCCTCTCCGC 59.037 66.667 0.00 0.00 0.00 5.54
259 260 2.963371 GCCTATACCGCCTCTCCG 59.037 66.667 0.00 0.00 0.00 4.63
260 261 2.963371 CGCCTATACCGCCTCTCC 59.037 66.667 0.00 0.00 0.00 3.71
261 262 2.258897 GCGCCTATACCGCCTCTC 59.741 66.667 0.00 0.00 45.30 3.20
302 303 4.988598 CTGCAGCCCAACGTCGGT 62.989 66.667 0.00 0.00 0.00 4.69
304 305 4.988598 ACCTGCAGCCCAACGTCG 62.989 66.667 8.66 0.00 0.00 5.12
305 306 3.357079 CACCTGCAGCCCAACGTC 61.357 66.667 8.66 0.00 0.00 4.34
306 307 4.954970 CCACCTGCAGCCCAACGT 62.955 66.667 8.66 0.00 0.00 3.99
308 309 4.603535 ACCCACCTGCAGCCCAAC 62.604 66.667 8.66 0.00 0.00 3.77
309 310 4.601794 CACCCACCTGCAGCCCAA 62.602 66.667 8.66 0.00 0.00 4.12
313 314 4.052518 ATCCCACCCACCTGCAGC 62.053 66.667 8.66 0.00 0.00 5.25
314 315 2.273449 GATCCCACCCACCTGCAG 59.727 66.667 6.78 6.78 0.00 4.41
315 316 3.338250 GGATCCCACCCACCTGCA 61.338 66.667 0.00 0.00 0.00 4.41
316 317 2.228841 ATTGGATCCCACCCACCTGC 62.229 60.000 9.90 0.00 30.78 4.85
317 318 0.106519 GATTGGATCCCACCCACCTG 60.107 60.000 9.90 0.00 30.78 4.00
318 319 1.289244 GGATTGGATCCCACCCACCT 61.289 60.000 9.90 0.00 43.88 4.00
319 320 1.230212 GGATTGGATCCCACCCACC 59.770 63.158 9.90 0.65 43.88 4.61
337 338 2.973899 CCGCCGATCCTCCCATAG 59.026 66.667 0.00 0.00 0.00 2.23
338 339 3.311110 GCCGCCGATCCTCCCATA 61.311 66.667 0.00 0.00 0.00 2.74
361 362 2.748058 TTTTCCCTCACTCGCAGCCC 62.748 60.000 0.00 0.00 0.00 5.19
362 363 0.678048 ATTTTCCCTCACTCGCAGCC 60.678 55.000 0.00 0.00 0.00 4.85
363 364 0.449388 CATTTTCCCTCACTCGCAGC 59.551 55.000 0.00 0.00 0.00 5.25
364 365 0.449388 GCATTTTCCCTCACTCGCAG 59.551 55.000 0.00 0.00 0.00 5.18
365 366 0.250684 TGCATTTTCCCTCACTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
366 367 0.449388 CTGCATTTTCCCTCACTCGC 59.551 55.000 0.00 0.00 0.00 5.03
367 368 1.089920 CCTGCATTTTCCCTCACTCG 58.910 55.000 0.00 0.00 0.00 4.18
368 369 2.087646 GACCTGCATTTTCCCTCACTC 58.912 52.381 0.00 0.00 0.00 3.51
369 370 1.707427 AGACCTGCATTTTCCCTCACT 59.293 47.619 0.00 0.00 0.00 3.41
370 371 2.206576 AGACCTGCATTTTCCCTCAC 57.793 50.000 0.00 0.00 0.00 3.51
371 372 2.978156 AAGACCTGCATTTTCCCTCA 57.022 45.000 0.00 0.00 0.00 3.86
372 373 4.607293 AAAAAGACCTGCATTTTCCCTC 57.393 40.909 0.00 0.00 0.00 4.30
401 402 2.246761 TTATTCCCCTGCGGTCACGG 62.247 60.000 0.00 0.00 41.36 4.94
402 403 0.810031 CTTATTCCCCTGCGGTCACG 60.810 60.000 0.00 0.00 44.63 4.35
403 404 0.463833 CCTTATTCCCCTGCGGTCAC 60.464 60.000 0.00 0.00 0.00 3.67
404 405 1.912220 CCTTATTCCCCTGCGGTCA 59.088 57.895 0.00 0.00 0.00 4.02
405 406 1.526225 GCCTTATTCCCCTGCGGTC 60.526 63.158 0.00 0.00 0.00 4.79
406 407 2.001269 AGCCTTATTCCCCTGCGGT 61.001 57.895 0.00 0.00 0.00 5.68
407 408 1.526917 CAGCCTTATTCCCCTGCGG 60.527 63.158 0.00 0.00 0.00 5.69
408 409 0.109342 ATCAGCCTTATTCCCCTGCG 59.891 55.000 0.00 0.00 0.00 5.18
409 410 1.959282 CAATCAGCCTTATTCCCCTGC 59.041 52.381 0.00 0.00 0.00 4.85
410 411 2.590821 CCAATCAGCCTTATTCCCCTG 58.409 52.381 0.00 0.00 0.00 4.45
411 412 1.500736 CCCAATCAGCCTTATTCCCCT 59.499 52.381 0.00 0.00 0.00 4.79
412 413 1.217942 ACCCAATCAGCCTTATTCCCC 59.782 52.381 0.00 0.00 0.00 4.81
413 414 2.091885 TCACCCAATCAGCCTTATTCCC 60.092 50.000 0.00 0.00 0.00 3.97
414 415 3.297134 TCACCCAATCAGCCTTATTCC 57.703 47.619 0.00 0.00 0.00 3.01
415 416 5.859205 AAATCACCCAATCAGCCTTATTC 57.141 39.130 0.00 0.00 0.00 1.75
416 417 5.104817 CCAAAATCACCCAATCAGCCTTATT 60.105 40.000 0.00 0.00 0.00 1.40
417 418 4.406649 CCAAAATCACCCAATCAGCCTTAT 59.593 41.667 0.00 0.00 0.00 1.73
418 419 3.768757 CCAAAATCACCCAATCAGCCTTA 59.231 43.478 0.00 0.00 0.00 2.69
419 420 2.568509 CCAAAATCACCCAATCAGCCTT 59.431 45.455 0.00 0.00 0.00 4.35
420 421 2.181975 CCAAAATCACCCAATCAGCCT 58.818 47.619 0.00 0.00 0.00 4.58
421 422 2.178580 TCCAAAATCACCCAATCAGCC 58.821 47.619 0.00 0.00 0.00 4.85
422 423 3.959535 TTCCAAAATCACCCAATCAGC 57.040 42.857 0.00 0.00 0.00 4.26
423 424 5.010922 TCAGTTTCCAAAATCACCCAATCAG 59.989 40.000 0.00 0.00 0.00 2.90
424 425 4.898265 TCAGTTTCCAAAATCACCCAATCA 59.102 37.500 0.00 0.00 0.00 2.57
425 426 5.467035 TCAGTTTCCAAAATCACCCAATC 57.533 39.130 0.00 0.00 0.00 2.67
426 427 5.885449 TTCAGTTTCCAAAATCACCCAAT 57.115 34.783 0.00 0.00 0.00 3.16
427 428 5.885449 ATTCAGTTTCCAAAATCACCCAA 57.115 34.783 0.00 0.00 0.00 4.12
428 429 6.985653 TTATTCAGTTTCCAAAATCACCCA 57.014 33.333 0.00 0.00 0.00 4.51
429 430 7.545615 GTCATTATTCAGTTTCCAAAATCACCC 59.454 37.037 0.00 0.00 0.00 4.61
430 431 7.273381 CGTCATTATTCAGTTTCCAAAATCACC 59.727 37.037 0.00 0.00 0.00 4.02
431 432 7.807907 ACGTCATTATTCAGTTTCCAAAATCAC 59.192 33.333 0.00 0.00 0.00 3.06
432 433 7.807433 CACGTCATTATTCAGTTTCCAAAATCA 59.193 33.333 0.00 0.00 0.00 2.57
433 434 7.273381 CCACGTCATTATTCAGTTTCCAAAATC 59.727 37.037 0.00 0.00 0.00 2.17
434 435 7.090173 CCACGTCATTATTCAGTTTCCAAAAT 58.910 34.615 0.00 0.00 0.00 1.82
435 436 6.442952 CCACGTCATTATTCAGTTTCCAAAA 58.557 36.000 0.00 0.00 0.00 2.44
436 437 5.563867 GCCACGTCATTATTCAGTTTCCAAA 60.564 40.000 0.00 0.00 0.00 3.28
437 438 4.083003 GCCACGTCATTATTCAGTTTCCAA 60.083 41.667 0.00 0.00 0.00 3.53
438 439 3.438781 GCCACGTCATTATTCAGTTTCCA 59.561 43.478 0.00 0.00 0.00 3.53
439 440 3.438781 TGCCACGTCATTATTCAGTTTCC 59.561 43.478 0.00 0.00 0.00 3.13
440 441 4.678509 TGCCACGTCATTATTCAGTTTC 57.321 40.909 0.00 0.00 0.00 2.78
441 442 5.446143 TTTGCCACGTCATTATTCAGTTT 57.554 34.783 0.00 0.00 0.00 2.66
442 443 5.640732 GATTTGCCACGTCATTATTCAGTT 58.359 37.500 0.00 0.00 0.00 3.16
443 444 4.201812 CGATTTGCCACGTCATTATTCAGT 60.202 41.667 0.00 0.00 0.00 3.41
444 445 4.274069 CGATTTGCCACGTCATTATTCAG 58.726 43.478 0.00 0.00 0.00 3.02
445 446 3.486708 GCGATTTGCCACGTCATTATTCA 60.487 43.478 0.00 0.00 37.76 2.57
446 447 3.035942 GCGATTTGCCACGTCATTATTC 58.964 45.455 0.00 0.00 37.76 1.75
447 448 3.065019 GCGATTTGCCACGTCATTATT 57.935 42.857 0.00 0.00 37.76 1.40
448 449 2.755836 GCGATTTGCCACGTCATTAT 57.244 45.000 0.00 0.00 37.76 1.28
459 460 2.361104 TCCACCCCAGCGATTTGC 60.361 61.111 0.00 0.00 46.98 3.68
460 461 0.680921 ATGTCCACCCCAGCGATTTG 60.681 55.000 0.00 0.00 0.00 2.32
461 462 0.039618 AATGTCCACCCCAGCGATTT 59.960 50.000 0.00 0.00 0.00 2.17
462 463 0.680921 CAATGTCCACCCCAGCGATT 60.681 55.000 0.00 0.00 0.00 3.34
463 464 1.077501 CAATGTCCACCCCAGCGAT 60.078 57.895 0.00 0.00 0.00 4.58
464 465 2.350895 CAATGTCCACCCCAGCGA 59.649 61.111 0.00 0.00 0.00 4.93
465 466 2.034066 ACAATGTCCACCCCAGCG 59.966 61.111 0.00 0.00 0.00 5.18
466 467 2.639327 GCACAATGTCCACCCCAGC 61.639 63.158 0.00 0.00 0.00 4.85
467 468 0.612732 ATGCACAATGTCCACCCCAG 60.613 55.000 0.00 0.00 0.00 4.45
468 469 0.899253 CATGCACAATGTCCACCCCA 60.899 55.000 0.00 0.00 0.00 4.96
469 470 0.611618 TCATGCACAATGTCCACCCC 60.612 55.000 0.00 0.00 37.56 4.95
470 471 1.135527 CATCATGCACAATGTCCACCC 59.864 52.381 0.00 0.00 37.56 4.61
471 472 2.093890 TCATCATGCACAATGTCCACC 58.906 47.619 9.33 0.00 37.56 4.61
472 473 3.853831 TTCATCATGCACAATGTCCAC 57.146 42.857 9.33 0.00 37.56 4.02
473 474 4.080687 TCTTTCATCATGCACAATGTCCA 58.919 39.130 9.33 0.00 37.56 4.02
474 475 4.707030 TCTTTCATCATGCACAATGTCC 57.293 40.909 9.33 0.00 37.56 4.02
475 476 7.700505 TCTATTCTTTCATCATGCACAATGTC 58.299 34.615 9.33 0.00 37.56 3.06
476 477 7.555195 TCTCTATTCTTTCATCATGCACAATGT 59.445 33.333 9.33 0.00 37.56 2.71
477 478 7.927048 TCTCTATTCTTTCATCATGCACAATG 58.073 34.615 0.00 0.00 37.66 2.82
478 479 7.991460 TCTCTCTATTCTTTCATCATGCACAAT 59.009 33.333 0.00 0.00 0.00 2.71
479 480 7.333323 TCTCTCTATTCTTTCATCATGCACAA 58.667 34.615 0.00 0.00 0.00 3.33
480 481 6.881570 TCTCTCTATTCTTTCATCATGCACA 58.118 36.000 0.00 0.00 0.00 4.57
481 482 7.518689 GCTTCTCTCTATTCTTTCATCATGCAC 60.519 40.741 0.00 0.00 0.00 4.57
482 483 6.482641 GCTTCTCTCTATTCTTTCATCATGCA 59.517 38.462 0.00 0.00 0.00 3.96
483 484 6.346758 CGCTTCTCTCTATTCTTTCATCATGC 60.347 42.308 0.00 0.00 0.00 4.06
484 485 6.145858 CCGCTTCTCTCTATTCTTTCATCATG 59.854 42.308 0.00 0.00 0.00 3.07
485 486 6.222389 CCGCTTCTCTCTATTCTTTCATCAT 58.778 40.000 0.00 0.00 0.00 2.45
486 487 5.452496 CCCGCTTCTCTCTATTCTTTCATCA 60.452 44.000 0.00 0.00 0.00 3.07
487 488 4.987912 CCCGCTTCTCTCTATTCTTTCATC 59.012 45.833 0.00 0.00 0.00 2.92
488 489 4.202305 CCCCGCTTCTCTCTATTCTTTCAT 60.202 45.833 0.00 0.00 0.00 2.57
489 490 3.133003 CCCCGCTTCTCTCTATTCTTTCA 59.867 47.826 0.00 0.00 0.00 2.69
490 491 3.385111 TCCCCGCTTCTCTCTATTCTTTC 59.615 47.826 0.00 0.00 0.00 2.62
491 492 3.375699 TCCCCGCTTCTCTCTATTCTTT 58.624 45.455 0.00 0.00 0.00 2.52
492 493 2.962421 CTCCCCGCTTCTCTCTATTCTT 59.038 50.000 0.00 0.00 0.00 2.52
493 494 2.091555 ACTCCCCGCTTCTCTCTATTCT 60.092 50.000 0.00 0.00 0.00 2.40
494 495 2.312390 ACTCCCCGCTTCTCTCTATTC 58.688 52.381 0.00 0.00 0.00 1.75
495 496 2.463047 ACTCCCCGCTTCTCTCTATT 57.537 50.000 0.00 0.00 0.00 1.73
496 497 3.117436 AGTTACTCCCCGCTTCTCTCTAT 60.117 47.826 0.00 0.00 0.00 1.98
497 498 2.241685 AGTTACTCCCCGCTTCTCTCTA 59.758 50.000 0.00 0.00 0.00 2.43
498 499 1.006162 AGTTACTCCCCGCTTCTCTCT 59.994 52.381 0.00 0.00 0.00 3.10
499 500 1.476477 AGTTACTCCCCGCTTCTCTC 58.524 55.000 0.00 0.00 0.00 3.20
500 501 1.826096 GAAGTTACTCCCCGCTTCTCT 59.174 52.381 0.00 0.00 35.69 3.10
501 502 1.826096 AGAAGTTACTCCCCGCTTCTC 59.174 52.381 0.00 0.00 42.56 2.87
502 503 1.939980 AGAAGTTACTCCCCGCTTCT 58.060 50.000 0.00 0.00 41.72 2.85
503 504 2.764439 AAGAAGTTACTCCCCGCTTC 57.236 50.000 0.00 0.00 38.01 3.86
504 505 3.836562 TCTTAAGAAGTTACTCCCCGCTT 59.163 43.478 1.68 0.00 0.00 4.68
505 506 3.438183 TCTTAAGAAGTTACTCCCCGCT 58.562 45.455 1.68 0.00 0.00 5.52
506 507 3.881937 TCTTAAGAAGTTACTCCCCGC 57.118 47.619 1.68 0.00 0.00 6.13
507 508 5.116882 CCATTCTTAAGAAGTTACTCCCCG 58.883 45.833 21.75 2.33 37.48 5.73
508 509 6.063496 ACCATTCTTAAGAAGTTACTCCCC 57.937 41.667 21.75 0.00 37.48 4.81
509 510 6.762187 GCTACCATTCTTAAGAAGTTACTCCC 59.238 42.308 21.75 4.46 37.48 4.30
510 511 7.557724 AGCTACCATTCTTAAGAAGTTACTCC 58.442 38.462 21.75 8.62 37.48 3.85
511 512 8.874816 CAAGCTACCATTCTTAAGAAGTTACTC 58.125 37.037 21.75 10.48 37.48 2.59
512 513 7.824779 CCAAGCTACCATTCTTAAGAAGTTACT 59.175 37.037 21.75 12.77 37.48 2.24
513 514 7.822822 TCCAAGCTACCATTCTTAAGAAGTTAC 59.177 37.037 21.75 11.10 37.48 2.50
514 515 7.913789 TCCAAGCTACCATTCTTAAGAAGTTA 58.086 34.615 21.75 11.92 37.48 2.24
515 516 6.779860 TCCAAGCTACCATTCTTAAGAAGTT 58.220 36.000 21.75 11.47 37.48 2.66
516 517 6.374417 TCCAAGCTACCATTCTTAAGAAGT 57.626 37.500 21.75 17.00 37.48 3.01
517 518 7.872113 AATCCAAGCTACCATTCTTAAGAAG 57.128 36.000 21.75 12.44 37.48 2.85
518 519 8.522830 CAAAATCCAAGCTACCATTCTTAAGAA 58.477 33.333 19.83 19.83 38.56 2.52
519 520 7.888021 TCAAAATCCAAGCTACCATTCTTAAGA 59.112 33.333 0.00 0.00 0.00 2.10
520 521 8.055279 TCAAAATCCAAGCTACCATTCTTAAG 57.945 34.615 0.00 0.00 0.00 1.85
521 522 8.415950 TTCAAAATCCAAGCTACCATTCTTAA 57.584 30.769 0.00 0.00 0.00 1.85
522 523 7.888021 TCTTCAAAATCCAAGCTACCATTCTTA 59.112 33.333 0.00 0.00 0.00 2.10
523 524 6.721208 TCTTCAAAATCCAAGCTACCATTCTT 59.279 34.615 0.00 0.00 0.00 2.52
524 525 6.248433 TCTTCAAAATCCAAGCTACCATTCT 58.752 36.000 0.00 0.00 0.00 2.40
525 526 6.151817 ACTCTTCAAAATCCAAGCTACCATTC 59.848 38.462 0.00 0.00 0.00 2.67
526 527 6.012745 ACTCTTCAAAATCCAAGCTACCATT 58.987 36.000 0.00 0.00 0.00 3.16
527 528 5.416952 CACTCTTCAAAATCCAAGCTACCAT 59.583 40.000 0.00 0.00 0.00 3.55
528 529 4.761739 CACTCTTCAAAATCCAAGCTACCA 59.238 41.667 0.00 0.00 0.00 3.25
529 530 4.762251 ACACTCTTCAAAATCCAAGCTACC 59.238 41.667 0.00 0.00 0.00 3.18
530 531 5.335191 CCACACTCTTCAAAATCCAAGCTAC 60.335 44.000 0.00 0.00 0.00 3.58
531 532 4.761739 CCACACTCTTCAAAATCCAAGCTA 59.238 41.667 0.00 0.00 0.00 3.32
532 533 3.571401 CCACACTCTTCAAAATCCAAGCT 59.429 43.478 0.00 0.00 0.00 3.74
533 534 3.569701 TCCACACTCTTCAAAATCCAAGC 59.430 43.478 0.00 0.00 0.00 4.01
534 535 5.772825 TTCCACACTCTTCAAAATCCAAG 57.227 39.130 0.00 0.00 0.00 3.61
535 536 5.010922 CCATTCCACACTCTTCAAAATCCAA 59.989 40.000 0.00 0.00 0.00 3.53
536 537 4.523943 CCATTCCACACTCTTCAAAATCCA 59.476 41.667 0.00 0.00 0.00 3.41
537 538 4.766891 TCCATTCCACACTCTTCAAAATCC 59.233 41.667 0.00 0.00 0.00 3.01
538 539 5.105997 CCTCCATTCCACACTCTTCAAAATC 60.106 44.000 0.00 0.00 0.00 2.17
539 540 4.768968 CCTCCATTCCACACTCTTCAAAAT 59.231 41.667 0.00 0.00 0.00 1.82
540 541 4.144297 CCTCCATTCCACACTCTTCAAAA 58.856 43.478 0.00 0.00 0.00 2.44
541 542 3.138283 ACCTCCATTCCACACTCTTCAAA 59.862 43.478 0.00 0.00 0.00 2.69
542 543 2.711009 ACCTCCATTCCACACTCTTCAA 59.289 45.455 0.00 0.00 0.00 2.69
543 544 2.038952 CACCTCCATTCCACACTCTTCA 59.961 50.000 0.00 0.00 0.00 3.02
544 545 2.616510 CCACCTCCATTCCACACTCTTC 60.617 54.545 0.00 0.00 0.00 2.87
545 546 1.352352 CCACCTCCATTCCACACTCTT 59.648 52.381 0.00 0.00 0.00 2.85
546 547 0.987294 CCACCTCCATTCCACACTCT 59.013 55.000 0.00 0.00 0.00 3.24
547 548 0.693049 ACCACCTCCATTCCACACTC 59.307 55.000 0.00 0.00 0.00 3.51
548 549 1.909302 CTACCACCTCCATTCCACACT 59.091 52.381 0.00 0.00 0.00 3.55
549 550 1.628846 ACTACCACCTCCATTCCACAC 59.371 52.381 0.00 0.00 0.00 3.82
550 551 2.038863 ACTACCACCTCCATTCCACA 57.961 50.000 0.00 0.00 0.00 4.17
551 552 3.434940 AAACTACCACCTCCATTCCAC 57.565 47.619 0.00 0.00 0.00 4.02
552 553 4.463050 AAAAACTACCACCTCCATTCCA 57.537 40.909 0.00 0.00 0.00 3.53
581 582 8.968969 ACCTACTCAAAGAGTCGAGTATAATTT 58.031 33.333 2.48 0.00 42.40 1.82
582 583 8.522542 ACCTACTCAAAGAGTCGAGTATAATT 57.477 34.615 2.48 0.00 42.40 1.40
583 584 8.522542 AACCTACTCAAAGAGTCGAGTATAAT 57.477 34.615 2.48 0.00 42.40 1.28
584 585 7.934855 AACCTACTCAAAGAGTCGAGTATAA 57.065 36.000 2.48 0.00 42.40 0.98
585 586 7.934855 AAACCTACTCAAAGAGTCGAGTATA 57.065 36.000 2.48 0.00 42.40 1.47
586 587 6.837471 AAACCTACTCAAAGAGTCGAGTAT 57.163 37.500 2.48 0.00 42.40 2.12
587 588 6.645790 AAAACCTACTCAAAGAGTCGAGTA 57.354 37.500 2.48 6.32 42.40 2.59
588 589 5.532664 AAAACCTACTCAAAGAGTCGAGT 57.467 39.130 2.48 0.00 42.40 4.18
682 683 5.243426 AGCTTTGCGAGTTTGTCTAAAAA 57.757 34.783 0.00 0.00 0.00 1.94
683 684 4.893424 AGCTTTGCGAGTTTGTCTAAAA 57.107 36.364 0.00 0.00 0.00 1.52
684 685 4.893424 AAGCTTTGCGAGTTTGTCTAAA 57.107 36.364 0.00 0.00 0.00 1.85
685 686 4.893424 AAAGCTTTGCGAGTTTGTCTAA 57.107 36.364 11.80 0.00 0.00 2.10
686 687 4.893424 AAAAGCTTTGCGAGTTTGTCTA 57.107 36.364 13.54 0.00 0.00 2.59
687 688 3.782889 AAAAGCTTTGCGAGTTTGTCT 57.217 38.095 13.54 0.00 0.00 3.41
688 689 5.685511 TGAATAAAAGCTTTGCGAGTTTGTC 59.314 36.000 13.54 1.68 0.00 3.18
689 690 5.458779 GTGAATAAAAGCTTTGCGAGTTTGT 59.541 36.000 13.54 0.00 0.00 2.83
690 691 5.107875 GGTGAATAAAAGCTTTGCGAGTTTG 60.108 40.000 13.54 0.00 0.00 2.93
691 692 4.982295 GGTGAATAAAAGCTTTGCGAGTTT 59.018 37.500 13.54 0.00 0.00 2.66
692 693 4.546570 GGTGAATAAAAGCTTTGCGAGTT 58.453 39.130 13.54 3.67 0.00 3.01
693 694 3.057526 GGGTGAATAAAAGCTTTGCGAGT 60.058 43.478 13.54 0.28 0.00 4.18
694 695 3.501950 GGGTGAATAAAAGCTTTGCGAG 58.498 45.455 13.54 0.00 0.00 5.03
695 696 2.095466 CGGGTGAATAAAAGCTTTGCGA 60.095 45.455 13.54 1.60 0.00 5.10
696 697 2.250188 CGGGTGAATAAAAGCTTTGCG 58.750 47.619 13.54 0.00 0.00 4.85
697 698 3.242518 GACGGGTGAATAAAAGCTTTGC 58.757 45.455 13.54 3.71 0.00 3.68
698 699 4.226761 GTGACGGGTGAATAAAAGCTTTG 58.773 43.478 13.54 0.00 0.00 2.77
699 700 3.886505 TGTGACGGGTGAATAAAAGCTTT 59.113 39.130 5.69 5.69 0.00 3.51
700 701 3.482436 TGTGACGGGTGAATAAAAGCTT 58.518 40.909 0.00 0.00 0.00 3.74
701 702 3.134574 TGTGACGGGTGAATAAAAGCT 57.865 42.857 0.00 0.00 0.00 3.74
702 703 3.907894 TTGTGACGGGTGAATAAAAGC 57.092 42.857 0.00 0.00 0.00 3.51
703 704 5.371115 ACATTGTGACGGGTGAATAAAAG 57.629 39.130 0.00 0.00 0.00 2.27
704 705 5.776173 AACATTGTGACGGGTGAATAAAA 57.224 34.783 0.00 0.00 0.00 1.52
705 706 5.776173 AAACATTGTGACGGGTGAATAAA 57.224 34.783 0.00 0.00 0.00 1.40
706 707 5.763698 TGTAAACATTGTGACGGGTGAATAA 59.236 36.000 0.00 0.00 0.00 1.40
707 708 5.306394 TGTAAACATTGTGACGGGTGAATA 58.694 37.500 0.00 0.00 0.00 1.75
708 709 4.138290 TGTAAACATTGTGACGGGTGAAT 58.862 39.130 0.00 0.00 0.00 2.57
709 710 3.542648 TGTAAACATTGTGACGGGTGAA 58.457 40.909 0.00 0.00 0.00 3.18
710 711 3.195471 TGTAAACATTGTGACGGGTGA 57.805 42.857 0.00 0.00 0.00 4.02
711 712 3.304391 CCTTGTAAACATTGTGACGGGTG 60.304 47.826 0.00 0.00 0.00 4.61
712 713 2.882137 CCTTGTAAACATTGTGACGGGT 59.118 45.455 0.00 0.00 0.00 5.28
713 714 3.058501 GTCCTTGTAAACATTGTGACGGG 60.059 47.826 0.00 0.00 0.00 5.28
714 715 3.562141 TGTCCTTGTAAACATTGTGACGG 59.438 43.478 0.00 0.00 0.00 4.79
715 716 4.804608 TGTCCTTGTAAACATTGTGACG 57.195 40.909 0.00 0.00 0.00 4.35
716 717 8.419076 AATTTTGTCCTTGTAAACATTGTGAC 57.581 30.769 0.00 0.00 0.00 3.67
717 718 8.253810 TGAATTTTGTCCTTGTAAACATTGTGA 58.746 29.630 0.00 0.00 0.00 3.58
718 719 8.417780 TGAATTTTGTCCTTGTAAACATTGTG 57.582 30.769 0.00 0.00 0.00 3.33
719 720 9.442047 TTTGAATTTTGTCCTTGTAAACATTGT 57.558 25.926 0.00 0.00 0.00 2.71
727 728 9.323985 CCAGAAAATTTGAATTTTGTCCTTGTA 57.676 29.630 16.64 0.00 45.70 2.41
728 729 8.046107 TCCAGAAAATTTGAATTTTGTCCTTGT 58.954 29.630 16.64 0.00 45.70 3.16
729 730 8.436046 TCCAGAAAATTTGAATTTTGTCCTTG 57.564 30.769 16.64 6.54 45.70 3.61
730 731 9.059260 CATCCAGAAAATTTGAATTTTGTCCTT 57.941 29.630 16.64 0.00 45.70 3.36
731 732 8.431222 TCATCCAGAAAATTTGAATTTTGTCCT 58.569 29.630 16.64 7.26 45.70 3.85
732 733 8.498358 GTCATCCAGAAAATTTGAATTTTGTCC 58.502 33.333 16.64 5.45 45.70 4.02
733 734 8.498358 GGTCATCCAGAAAATTTGAATTTTGTC 58.502 33.333 16.64 6.11 45.70 3.18
734 735 8.212995 AGGTCATCCAGAAAATTTGAATTTTGT 58.787 29.630 16.64 11.26 40.99 2.83
735 736 8.611654 AGGTCATCCAGAAAATTTGAATTTTG 57.388 30.769 16.64 6.55 40.87 2.44
737 738 9.710900 GTTAGGTCATCCAGAAAATTTGAATTT 57.289 29.630 0.00 0.00 36.86 1.82
738 739 8.314021 GGTTAGGTCATCCAGAAAATTTGAATT 58.686 33.333 0.00 0.00 35.89 2.17
739 740 7.454380 TGGTTAGGTCATCCAGAAAATTTGAAT 59.546 33.333 0.00 0.00 35.89 2.57
740 741 6.780031 TGGTTAGGTCATCCAGAAAATTTGAA 59.220 34.615 0.00 0.00 35.89 2.69
741 742 6.310941 TGGTTAGGTCATCCAGAAAATTTGA 58.689 36.000 0.00 0.00 35.89 2.69
742 743 6.588719 TGGTTAGGTCATCCAGAAAATTTG 57.411 37.500 0.00 0.00 35.89 2.32
743 744 7.070571 TGTTTGGTTAGGTCATCCAGAAAATTT 59.929 33.333 0.00 0.00 35.89 1.82
744 745 6.553100 TGTTTGGTTAGGTCATCCAGAAAATT 59.447 34.615 0.00 0.00 35.89 1.82
745 746 6.074648 TGTTTGGTTAGGTCATCCAGAAAAT 58.925 36.000 0.00 0.00 35.89 1.82
746 747 5.450453 TGTTTGGTTAGGTCATCCAGAAAA 58.550 37.500 0.00 0.00 35.89 2.29
747 748 5.055265 TGTTTGGTTAGGTCATCCAGAAA 57.945 39.130 0.00 0.00 35.89 2.52
748 749 4.715534 TGTTTGGTTAGGTCATCCAGAA 57.284 40.909 0.00 0.00 35.89 3.02
749 750 4.288366 TCATGTTTGGTTAGGTCATCCAGA 59.712 41.667 0.00 0.00 35.89 3.86
750 751 4.396166 GTCATGTTTGGTTAGGTCATCCAG 59.604 45.833 0.00 0.00 35.89 3.86
751 752 4.331968 GTCATGTTTGGTTAGGTCATCCA 58.668 43.478 0.00 0.00 35.89 3.41
752 753 3.374058 CGTCATGTTTGGTTAGGTCATCC 59.626 47.826 0.00 0.00 0.00 3.51
753 754 3.374058 CCGTCATGTTTGGTTAGGTCATC 59.626 47.826 0.00 0.00 0.00 2.92
754 755 3.343617 CCGTCATGTTTGGTTAGGTCAT 58.656 45.455 0.00 0.00 0.00 3.06
755 756 2.773487 CCGTCATGTTTGGTTAGGTCA 58.227 47.619 0.00 0.00 0.00 4.02
756 757 1.467342 GCCGTCATGTTTGGTTAGGTC 59.533 52.381 0.00 0.00 0.00 3.85
757 758 1.530323 GCCGTCATGTTTGGTTAGGT 58.470 50.000 0.00 0.00 0.00 3.08
758 759 0.808755 GGCCGTCATGTTTGGTTAGG 59.191 55.000 0.00 0.00 0.00 2.69
759 760 1.529226 TGGCCGTCATGTTTGGTTAG 58.471 50.000 0.00 0.00 0.00 2.34
760 761 1.982660 TTGGCCGTCATGTTTGGTTA 58.017 45.000 0.00 0.00 0.00 2.85
761 762 1.115467 TTTGGCCGTCATGTTTGGTT 58.885 45.000 0.00 0.00 0.00 3.67
762 763 1.115467 TTTTGGCCGTCATGTTTGGT 58.885 45.000 0.00 0.00 0.00 3.67
763 764 1.496934 GTTTTGGCCGTCATGTTTGG 58.503 50.000 0.00 0.00 0.00 3.28
764 765 1.496934 GGTTTTGGCCGTCATGTTTG 58.503 50.000 0.00 0.00 0.00 2.93
765 766 0.391228 GGGTTTTGGCCGTCATGTTT 59.609 50.000 0.00 0.00 0.00 2.83
766 767 0.757188 TGGGTTTTGGCCGTCATGTT 60.757 50.000 0.00 0.00 0.00 2.71
767 768 1.152652 TGGGTTTTGGCCGTCATGT 60.153 52.632 0.00 0.00 0.00 3.21
768 769 1.586028 CTGGGTTTTGGCCGTCATG 59.414 57.895 0.00 0.00 0.00 3.07
769 770 1.606313 CCTGGGTTTTGGCCGTCAT 60.606 57.895 0.00 0.00 0.00 3.06
770 771 2.203422 CCTGGGTTTTGGCCGTCA 60.203 61.111 0.00 0.00 0.00 4.35
771 772 2.781431 ATCCCTGGGTTTTGGCCGTC 62.781 60.000 13.56 0.00 0.00 4.79
772 773 1.502527 TATCCCTGGGTTTTGGCCGT 61.503 55.000 13.56 0.00 0.00 5.68
773 774 0.323908 TTATCCCTGGGTTTTGGCCG 60.324 55.000 13.56 0.00 0.00 6.13
774 775 1.831106 CTTTATCCCTGGGTTTTGGCC 59.169 52.381 13.56 0.00 0.00 5.36
775 776 1.207089 GCTTTATCCCTGGGTTTTGGC 59.793 52.381 13.56 9.50 0.00 4.52
776 777 2.534990 TGCTTTATCCCTGGGTTTTGG 58.465 47.619 13.56 3.23 0.00 3.28
777 778 3.679639 GCATGCTTTATCCCTGGGTTTTG 60.680 47.826 13.56 2.15 0.00 2.44
778 779 2.501316 GCATGCTTTATCCCTGGGTTTT 59.499 45.455 13.56 1.71 0.00 2.43
779 780 2.110578 GCATGCTTTATCCCTGGGTTT 58.889 47.619 13.56 4.37 0.00 3.27
780 781 1.288932 AGCATGCTTTATCCCTGGGTT 59.711 47.619 16.30 7.13 0.00 4.11
781 782 0.929244 AGCATGCTTTATCCCTGGGT 59.071 50.000 16.30 2.73 0.00 4.51
782 783 2.077687 AAGCATGCTTTATCCCTGGG 57.922 50.000 27.21 6.33 31.29 4.45
783 784 3.447918 CAAAGCATGCTTTATCCCTGG 57.552 47.619 37.87 23.24 43.56 4.45
795 796 4.024556 CCTCTCCGTTAATAGCAAAGCATG 60.025 45.833 0.00 0.00 0.00 4.06
796 797 4.130118 CCTCTCCGTTAATAGCAAAGCAT 58.870 43.478 0.00 0.00 0.00 3.79
797 798 3.531538 CCTCTCCGTTAATAGCAAAGCA 58.468 45.455 0.00 0.00 0.00 3.91
798 799 2.872858 CCCTCTCCGTTAATAGCAAAGC 59.127 50.000 0.00 0.00 0.00 3.51
799 800 4.141914 ACTCCCTCTCCGTTAATAGCAAAG 60.142 45.833 0.00 0.00 0.00 2.77
800 801 3.773119 ACTCCCTCTCCGTTAATAGCAAA 59.227 43.478 0.00 0.00 0.00 3.68
801 802 3.371965 ACTCCCTCTCCGTTAATAGCAA 58.628 45.455 0.00 0.00 0.00 3.91
802 803 3.028094 ACTCCCTCTCCGTTAATAGCA 57.972 47.619 0.00 0.00 0.00 3.49
803 804 3.057386 GCTACTCCCTCTCCGTTAATAGC 60.057 52.174 0.00 0.00 0.00 2.97
804 805 4.400120 AGCTACTCCCTCTCCGTTAATAG 58.600 47.826 0.00 0.00 0.00 1.73
805 806 4.450305 AGCTACTCCCTCTCCGTTAATA 57.550 45.455 0.00 0.00 0.00 0.98
806 807 3.315880 AGCTACTCCCTCTCCGTTAAT 57.684 47.619 0.00 0.00 0.00 1.40
807 808 2.822707 AGCTACTCCCTCTCCGTTAA 57.177 50.000 0.00 0.00 0.00 2.01
808 809 2.652590 GAAGCTACTCCCTCTCCGTTA 58.347 52.381 0.00 0.00 0.00 3.18
809 810 1.476477 GAAGCTACTCCCTCTCCGTT 58.524 55.000 0.00 0.00 0.00 4.44
810 811 0.748729 CGAAGCTACTCCCTCTCCGT 60.749 60.000 0.00 0.00 0.00 4.69
811 812 0.748729 ACGAAGCTACTCCCTCTCCG 60.749 60.000 0.00 0.00 0.00 4.63
812 813 1.406180 GAACGAAGCTACTCCCTCTCC 59.594 57.143 0.00 0.00 0.00 3.71
813 814 2.093106 TGAACGAAGCTACTCCCTCTC 58.907 52.381 0.00 0.00 0.00 3.20
814 815 2.217510 TGAACGAAGCTACTCCCTCT 57.782 50.000 0.00 0.00 0.00 3.69
815 816 3.528597 AATGAACGAAGCTACTCCCTC 57.471 47.619 0.00 0.00 0.00 4.30
816 817 3.983044 AAATGAACGAAGCTACTCCCT 57.017 42.857 0.00 0.00 0.00 4.20
817 818 6.487103 CAAATAAATGAACGAAGCTACTCCC 58.513 40.000 0.00 0.00 0.00 4.30
928 929 1.203635 TGGGAGGTTTAGGATTGGGGA 60.204 52.381 0.00 0.00 0.00 4.81
929 930 1.063942 GTGGGAGGTTTAGGATTGGGG 60.064 57.143 0.00 0.00 0.00 4.96
930 931 1.063942 GGTGGGAGGTTTAGGATTGGG 60.064 57.143 0.00 0.00 0.00 4.12
973 974 2.529389 GACTCTGGGTGTGGGGGT 60.529 66.667 0.00 0.00 0.00 4.95
974 975 2.203998 AGACTCTGGGTGTGGGGG 60.204 66.667 0.00 0.00 0.00 5.40
975 976 2.650116 CGAGACTCTGGGTGTGGGG 61.650 68.421 0.03 0.00 0.00 4.96
976 977 1.878656 GACGAGACTCTGGGTGTGGG 61.879 65.000 0.03 0.00 0.00 4.61
977 978 0.896019 AGACGAGACTCTGGGTGTGG 60.896 60.000 0.03 0.00 0.00 4.17
978 979 0.523966 GAGACGAGACTCTGGGTGTG 59.476 60.000 0.03 0.00 34.47 3.82
981 982 1.000646 GGGAGACGAGACTCTGGGT 60.001 63.158 0.03 0.00 37.13 4.51
986 987 1.439644 GCCATGGGAGACGAGACTC 59.560 63.158 15.13 0.00 36.31 3.36
1174 1175 4.131088 GAGGCCGTGGGACGAGTC 62.131 72.222 0.00 0.00 46.05 3.36
1175 1176 4.988716 TGAGGCCGTGGGACGAGT 62.989 66.667 0.00 0.00 46.05 4.18
1176 1177 3.691342 TTGAGGCCGTGGGACGAG 61.691 66.667 0.00 0.00 46.05 4.18
1177 1178 3.998672 GTTGAGGCCGTGGGACGA 61.999 66.667 0.00 0.00 46.05 4.20
1186 1187 2.125793 GTCGTACCGGTTGAGGCC 60.126 66.667 15.04 0.00 33.69 5.19
1187 1188 2.125793 GGTCGTACCGGTTGAGGC 60.126 66.667 15.04 5.99 33.69 4.70
1188 1189 1.214589 CTGGTCGTACCGGTTGAGG 59.785 63.158 15.04 0.42 42.58 3.86
1189 1190 1.445582 GCTGGTCGTACCGGTTGAG 60.446 63.158 15.04 4.64 46.46 3.02
1190 1191 1.870055 GAGCTGGTCGTACCGGTTGA 61.870 60.000 15.04 9.09 46.46 3.18
1191 1192 1.445582 GAGCTGGTCGTACCGGTTG 60.446 63.158 15.04 6.24 46.46 3.77
1192 1193 2.968206 GAGCTGGTCGTACCGGTT 59.032 61.111 15.04 7.95 46.46 4.44
1193 1194 3.437795 CGAGCTGGTCGTACCGGT 61.438 66.667 20.08 13.98 46.46 5.28
1975 1976 2.359602 TCGGCTTCGTCGTCCTCT 60.360 61.111 0.00 0.00 35.06 3.69
2040 2041 0.389817 CTCGTCCGCCACATCAAAGA 60.390 55.000 0.00 0.00 0.00 2.52
2077 2078 3.612681 GCGGGCTGCCGTATCCTA 61.613 66.667 13.40 0.00 37.76 2.94
2344 2345 1.334689 GCCGTGATGTCATCGACGATA 60.335 52.381 25.88 0.00 36.56 2.92
2419 2420 2.088423 GTGCCCGTGATTCCAATAACA 58.912 47.619 0.00 0.00 0.00 2.41
2428 2429 2.047274 CCGTCTGTGCCCGTGATT 60.047 61.111 0.00 0.00 0.00 2.57
2488 2489 1.380302 GCCAGTCCTGACACCCATT 59.620 57.895 0.00 0.00 0.00 3.16
2517 2518 0.316841 GAAGGCATAGGCTCCGAGAG 59.683 60.000 0.00 0.00 37.50 3.20
2542 2543 2.470156 CTGCGCATCCAGCTTGTTA 58.530 52.632 12.24 0.00 42.61 2.41
2590 2591 0.035317 TCGTTGCCATCAGCTTCTGT 59.965 50.000 0.00 0.00 44.23 3.41
2632 2633 0.179067 TGGTCGTCTCCAACACAACC 60.179 55.000 0.00 0.00 34.24 3.77
2926 2927 5.810080 ACAGAGAAAGCTGGTACTTAAGT 57.190 39.130 13.68 13.68 40.20 2.24
2929 2930 6.169557 TCAAACAGAGAAAGCTGGTACTTA 57.830 37.500 0.00 0.00 40.20 2.24
2944 2945 2.035961 CAGAACCTCCGTCTCAAACAGA 59.964 50.000 0.00 0.00 0.00 3.41
2980 2981 5.018809 CCAGAGGAAATTTCAAGGATTCCA 58.981 41.667 19.49 0.00 43.03 3.53
3016 3017 5.822519 TGCAAGGATATTGTAGATGTTGTCC 59.177 40.000 0.00 0.00 0.00 4.02
3199 3200 5.990668 AGTTCCTTTACACTGTCAAGAAGT 58.009 37.500 4.89 0.00 0.00 3.01
3263 3269 2.544267 GCAGTGTGTTAGTGAGAACCAC 59.456 50.000 0.00 0.00 46.03 4.16
3265 3271 2.143925 GGCAGTGTGTTAGTGAGAACC 58.856 52.381 0.00 0.00 30.94 3.62
3273 3279 2.254546 TTGTGGAGGCAGTGTGTTAG 57.745 50.000 0.00 0.00 0.00 2.34
3299 3305 8.198778 ACGGTAAATTAACAGTTTGAAACCAAT 58.801 29.630 4.14 0.00 0.00 3.16
3490 3497 3.490439 TCTTCACTTGCTGGATTGTCA 57.510 42.857 0.00 0.00 0.00 3.58
3581 3589 9.219603 CTCAGAATAGACCAAGAAATGTGTAAA 57.780 33.333 0.00 0.00 0.00 2.01
3834 3842 6.952358 ACATAGGATTATACGGTGACTATGGT 59.048 38.462 0.00 0.00 40.13 3.55
3861 3869 9.846248 AAGTGTAGCATATTTCAACAATTTCTC 57.154 29.630 0.00 0.00 0.00 2.87
3863 3871 9.624697 TCAAGTGTAGCATATTTCAACAATTTC 57.375 29.630 0.00 0.00 0.00 2.17
3903 3911 7.168219 TCTGTAAGCATTTTTACACAGGATCT 58.832 34.615 0.00 0.00 38.31 2.75
3963 3971 7.645058 TTGGGGATTAGATCTTTGAAATGAC 57.355 36.000 0.00 0.00 0.00 3.06
3965 3973 7.440255 GCATTTGGGGATTAGATCTTTGAAATG 59.560 37.037 0.00 7.82 32.67 2.32
4026 4034 8.553459 AGTAACACATCAATCTACTTTCAAGG 57.447 34.615 0.00 0.00 0.00 3.61
4061 4069 7.568199 AGTTGTTCACTAGCACATTAAGTTT 57.432 32.000 0.00 0.00 31.97 2.66
4124 4197 7.770897 CAGCAGTAAAAATGTAATACTCCCTCT 59.229 37.037 0.00 0.00 0.00 3.69
4182 4255 4.580167 CAGTGACAACCTGAAGGATGAAAA 59.420 41.667 13.06 0.00 40.03 2.29
4542 4634 9.691362 AAATGAACATCACAAAATACAAGGTAC 57.309 29.630 0.00 0.00 0.00 3.34
4667 4760 6.198778 CAGAGAGAAGCAAGATCAGTAAATCG 59.801 42.308 0.00 0.00 0.00 3.34
4725 4824 0.254178 GAAGCTCAGCCATCTTGGGA 59.746 55.000 0.00 0.00 38.19 4.37
4737 4836 5.068460 GGCTAGTCTATCTTTGAGAAGCTCA 59.932 44.000 0.00 0.00 38.87 4.26
4799 4898 8.754461 AACTAGTTGTTTGTTAGCAGTCAGCAA 61.754 37.037 7.48 0.00 40.17 3.91
4824 4923 7.430441 CAGCAATCATCAATGATGGTCATAAA 58.570 34.615 21.58 2.42 46.22 1.40
4831 4930 3.317993 TCTGCAGCAATCATCAATGATGG 59.682 43.478 21.58 8.28 46.22 3.51
4903 5002 2.773993 TTCCATTCCGGTGTACCTTC 57.226 50.000 0.00 0.00 35.57 3.46
4934 5033 1.606668 TCACGAAAACTGACATTGGGC 59.393 47.619 0.00 0.00 0.00 5.36
4951 5050 9.072294 CCGGACATTTATTTGTCTATTTTTCAC 57.928 33.333 0.00 0.00 44.39 3.18
5000 5099 4.320494 CCTTTGGATTGTAGCACACTTCAC 60.320 45.833 0.00 0.00 0.00 3.18
5020 5119 5.990120 ATAACTTAGTCGTGTGTACCCTT 57.010 39.130 0.00 0.00 0.00 3.95
5025 5124 6.806249 CCGGTAAAATAACTTAGTCGTGTGTA 59.194 38.462 0.00 0.00 0.00 2.90
5066 5165 2.593026 GACAAAGGGTGGATCCAACAA 58.407 47.619 30.61 0.00 38.11 2.83
5220 5321 9.127277 GAGAGAGGAGGATAATATATGTACCAC 57.873 40.741 0.00 0.00 0.00 4.16
5257 5358 5.037015 TCCAAAACATTTAATGGACGTCG 57.963 39.130 9.92 0.00 37.05 5.12
5375 5480 8.972458 TTGTTCAAAATATATCCAAGATCGGA 57.028 30.769 0.00 0.00 40.07 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.