Multiple sequence alignment - TraesCS1B01G221300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G221300 chr1B 100.000 2795 0 0 1 2795 398146098 398143304 0.000000e+00 5162
1 TraesCS1B01G221300 chr1B 91.942 484 38 1 1103 1586 683420957 683420475 0.000000e+00 676
2 TraesCS1B01G221300 chr1D 91.545 2815 129 45 1 2740 296980615 296977835 0.000000e+00 3779
3 TraesCS1B01G221300 chr1D 86.245 269 29 4 860 1128 46477006 46477266 4.560000e-73 285
4 TraesCS1B01G221300 chr1A 89.613 1781 97 37 623 2363 369497993 369496261 0.000000e+00 2183
5 TraesCS1B01G221300 chr1A 90.586 563 37 6 1 557 369503384 369502832 0.000000e+00 732
6 TraesCS1B01G221300 chr1A 95.538 381 11 3 2416 2795 369496250 369495875 3.080000e-169 604
7 TraesCS1B01G221300 chr2B 88.723 603 54 9 992 1586 44986554 44987150 0.000000e+00 725
8 TraesCS1B01G221300 chr4B 87.648 591 70 3 996 1586 365085753 365086340 0.000000e+00 684
9 TraesCS1B01G221300 chr4B 86.409 596 76 4 992 1586 358486463 358485872 0.000000e+00 647
10 TraesCS1B01G221300 chr5B 90.945 508 45 1 1079 1586 679584408 679584914 0.000000e+00 682
11 TraesCS1B01G221300 chr2D 90.789 456 38 3 1132 1586 36503273 36503725 8.560000e-170 606
12 TraesCS1B01G221300 chr2D 85.502 269 31 4 860 1128 36499291 36499551 9.860000e-70 274
13 TraesCS1B01G221300 chr7D 90.132 456 41 3 1132 1586 277456199 277456651 8.620000e-165 590
14 TraesCS1B01G221300 chr5A 86.765 272 28 4 860 1131 299616892 299616629 2.110000e-76 296
15 TraesCS1B01G221300 chr3D 85.662 272 31 4 860 1131 12137748 12137485 2.120000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G221300 chr1B 398143304 398146098 2794 True 5162.0 5162 100.0000 1 2795 1 chr1B.!!$R1 2794
1 TraesCS1B01G221300 chr1D 296977835 296980615 2780 True 3779.0 3779 91.5450 1 2740 1 chr1D.!!$R1 2739
2 TraesCS1B01G221300 chr1A 369495875 369497993 2118 True 1393.5 2183 92.5755 623 2795 2 chr1A.!!$R2 2172
3 TraesCS1B01G221300 chr1A 369502832 369503384 552 True 732.0 732 90.5860 1 557 1 chr1A.!!$R1 556
4 TraesCS1B01G221300 chr2B 44986554 44987150 596 False 725.0 725 88.7230 992 1586 1 chr2B.!!$F1 594
5 TraesCS1B01G221300 chr4B 365085753 365086340 587 False 684.0 684 87.6480 996 1586 1 chr4B.!!$F1 590
6 TraesCS1B01G221300 chr4B 358485872 358486463 591 True 647.0 647 86.4090 992 1586 1 chr4B.!!$R1 594
7 TraesCS1B01G221300 chr5B 679584408 679584914 506 False 682.0 682 90.9450 1079 1586 1 chr5B.!!$F1 507
8 TraesCS1B01G221300 chr2D 36499291 36503725 4434 False 440.0 606 88.1455 860 1586 2 chr2D.!!$F1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 131 0.528924 CGATACACCAGAACCCGTCA 59.471 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 5617 0.168128 AAAAGATGCAACGCGGCTAC 59.832 50.0 12.47 3.79 34.04 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 77 2.057137 AGAAACTGCAACTGCTGGAA 57.943 45.000 12.44 0.00 43.15 3.53
124 131 0.528924 CGATACACCAGAACCCGTCA 59.471 55.000 0.00 0.00 0.00 4.35
130 137 1.296392 CCAGAACCCGTCATGCTCA 59.704 57.895 0.00 0.00 0.00 4.26
170 177 1.862123 CAGCTTGTGTGCGTGTAGG 59.138 57.895 0.00 0.00 38.13 3.18
171 178 0.880278 CAGCTTGTGTGCGTGTAGGT 60.880 55.000 0.00 0.00 38.13 3.08
172 179 0.880278 AGCTTGTGTGCGTGTAGGTG 60.880 55.000 0.00 0.00 38.13 4.00
173 180 1.157870 GCTTGTGTGCGTGTAGGTGT 61.158 55.000 0.00 0.00 0.00 4.16
174 181 1.870580 GCTTGTGTGCGTGTAGGTGTA 60.871 52.381 0.00 0.00 0.00 2.90
175 182 2.058798 CTTGTGTGCGTGTAGGTGTAG 58.941 52.381 0.00 0.00 0.00 2.74
196 203 2.359975 CCTTGACCCGGCCAGAAC 60.360 66.667 2.24 0.00 0.00 3.01
203 210 2.286523 CCCGGCCAGAACTCAGTCT 61.287 63.158 2.24 0.00 0.00 3.24
240 247 2.897972 GGGCGTACCGGAATCACT 59.102 61.111 9.46 0.00 36.48 3.41
241 248 1.219935 GGGCGTACCGGAATCACTT 59.780 57.895 9.46 0.00 36.48 3.16
265 273 5.433855 TGTAGCGTATTTTTGTTTGTCGAC 58.566 37.500 9.11 9.11 0.00 4.20
266 274 4.806342 AGCGTATTTTTGTTTGTCGACT 57.194 36.364 17.92 0.00 0.00 4.18
308 316 1.743958 GTGAGGTGCTCTAGCGAAGTA 59.256 52.381 0.00 0.00 45.83 2.24
496 513 2.776536 AGTCTGCTTATCCCAGCTCAAT 59.223 45.455 0.00 0.00 40.79 2.57
547 564 3.157881 AGCGCCATCTGTAGAGCTATAA 58.842 45.455 2.29 0.00 32.73 0.98
586 611 8.567285 TTTGGGAATCATCTACTCTTCTTTTC 57.433 34.615 0.00 0.00 0.00 2.29
591 616 8.672815 GGAATCATCTACTCTTCTTTTCCTTTG 58.327 37.037 0.00 0.00 0.00 2.77
592 617 8.572855 AATCATCTACTCTTCTTTTCCTTTGG 57.427 34.615 0.00 0.00 0.00 3.28
593 618 7.316393 TCATCTACTCTTCTTTTCCTTTGGA 57.684 36.000 0.00 0.00 0.00 3.53
612 637 8.512956 CCTTTGGAAATAATCTATCATCTGCTG 58.487 37.037 0.00 0.00 0.00 4.41
616 641 6.403418 GGAAATAATCTATCATCTGCTGCAGC 60.403 42.308 31.89 31.89 42.50 5.25
664 696 4.568152 AACCTCGAATCACCTTTGTTTG 57.432 40.909 0.00 0.00 0.00 2.93
670 702 4.274950 TCGAATCACCTTTGTTTGGAGAAC 59.725 41.667 0.00 0.00 0.00 3.01
695 727 4.374702 GCACCGAGCACGCACTTG 62.375 66.667 0.00 0.00 44.79 3.16
775 811 2.977178 CTGTTCCTCGCAGGCTCT 59.023 61.111 0.00 0.00 34.61 4.09
800 836 5.219739 AGGCCAGTAAGATAATCCAGAGAA 58.780 41.667 5.01 0.00 0.00 2.87
921 960 1.680651 CCTCACTCACTCTCCCGCT 60.681 63.158 0.00 0.00 0.00 5.52
964 1010 3.127533 GCAAGCTCCGCAACCGAT 61.128 61.111 3.31 0.00 36.29 4.18
1008 1054 2.678580 TCACCGCCGATGTCTGGA 60.679 61.111 0.00 0.00 0.00 3.86
1128 1176 2.302157 GCACCACCACTACTACCTCTTT 59.698 50.000 0.00 0.00 0.00 2.52
1158 4925 4.368808 CTCAACACGTTGGGCGCG 62.369 66.667 0.00 0.00 46.11 6.86
1237 5007 1.661004 GCTCCTCCCCTACCTCCTCT 61.661 65.000 0.00 0.00 0.00 3.69
1249 5019 2.359602 TCCTCTTCCTCGCGTCGT 60.360 61.111 5.77 0.00 0.00 4.34
1808 5593 1.373497 CCTAGATGATGCGCCGTCC 60.373 63.158 4.18 0.00 0.00 4.79
1809 5594 1.730902 CTAGATGATGCGCCGTCCG 60.731 63.158 4.18 0.00 40.75 4.79
1817 5602 4.719369 GCGCCGTCCGAGTGTTCT 62.719 66.667 0.00 0.00 40.02 3.01
1829 5614 2.498167 GAGTGTTCTTGTGATGGCTGT 58.502 47.619 0.00 0.00 0.00 4.40
1831 5616 0.953727 TGTTCTTGTGATGGCTGTGC 59.046 50.000 0.00 0.00 0.00 4.57
1832 5617 0.110056 GTTCTTGTGATGGCTGTGCG 60.110 55.000 0.00 0.00 0.00 5.34
1833 5618 0.534877 TTCTTGTGATGGCTGTGCGT 60.535 50.000 0.00 0.00 0.00 5.24
1834 5619 0.320050 TCTTGTGATGGCTGTGCGTA 59.680 50.000 0.00 0.00 0.00 4.42
1862 5650 5.168569 CGTTGCATCTTTTACTCCAGTAGA 58.831 41.667 0.00 0.00 0.00 2.59
1873 5661 8.911918 TTTTACTCCAGTAGATTGTTGCTTTA 57.088 30.769 0.00 0.00 0.00 1.85
1874 5662 8.911918 TTTACTCCAGTAGATTGTTGCTTTAA 57.088 30.769 0.00 0.00 0.00 1.52
1916 5705 6.480763 TGGCCATGTAAAATTTCTCAGTAGA 58.519 36.000 0.00 0.00 0.00 2.59
1917 5706 7.118723 TGGCCATGTAAAATTTCTCAGTAGAT 58.881 34.615 0.00 0.00 0.00 1.98
1920 5709 9.109393 GCCATGTAAAATTTCTCAGTAGATGTA 57.891 33.333 0.00 0.00 0.00 2.29
1935 5724 3.987547 AGATGTAGATGTCAGCGAATGG 58.012 45.455 0.00 0.00 0.00 3.16
1963 5752 4.574828 GGTACCCTGTATGCACATTTACTG 59.425 45.833 0.00 0.00 33.14 2.74
1982 5775 1.435966 GCGCACGTACGTTTGTGAC 60.436 57.895 20.23 7.94 38.36 3.67
2102 5895 1.290134 GGTTGGGGGAATCTCTGTCT 58.710 55.000 0.00 0.00 0.00 3.41
2105 5898 3.459969 GGTTGGGGGAATCTCTGTCTATT 59.540 47.826 0.00 0.00 0.00 1.73
2116 5909 9.823647 GGAATCTCTGTCTATTGTCATAAAGAA 57.176 33.333 0.00 0.00 0.00 2.52
2157 5950 2.417933 AGCTCACATGCATTTCGTCTTC 59.582 45.455 0.00 0.00 34.99 2.87
2158 5951 2.785681 GCTCACATGCATTTCGTCTTCG 60.786 50.000 0.00 0.00 38.55 3.79
2159 5952 2.667969 CTCACATGCATTTCGTCTTCGA 59.332 45.455 0.00 0.00 44.66 3.71
2162 5955 3.612423 CACATGCATTTCGTCTTCGAGTA 59.388 43.478 0.00 0.00 46.81 2.59
2163 5956 4.268644 CACATGCATTTCGTCTTCGAGTAT 59.731 41.667 0.00 0.00 46.81 2.12
2164 5957 5.458779 CACATGCATTTCGTCTTCGAGTATA 59.541 40.000 0.00 0.00 46.81 1.47
2165 5958 5.459107 ACATGCATTTCGTCTTCGAGTATAC 59.541 40.000 0.00 0.00 46.81 1.47
2166 5959 4.033019 TGCATTTCGTCTTCGAGTATACG 58.967 43.478 0.00 5.03 46.81 3.06
2167 5960 3.421231 GCATTTCGTCTTCGAGTATACGG 59.579 47.826 9.86 0.00 46.81 4.02
2168 5961 4.787563 GCATTTCGTCTTCGAGTATACGGA 60.788 45.833 9.86 0.00 46.81 4.69
2169 5962 4.526970 TTTCGTCTTCGAGTATACGGAG 57.473 45.455 9.86 0.00 46.81 4.63
2170 5963 3.170791 TCGTCTTCGAGTATACGGAGT 57.829 47.619 9.86 0.00 42.79 3.85
2173 5966 4.683320 TCGTCTTCGAGTATACGGAGTATG 59.317 45.833 9.86 0.00 46.56 2.39
2192 5985 0.994263 GTTACAACGTCGGAATCGGG 59.006 55.000 0.00 0.00 36.95 5.14
2209 6002 1.073763 CGGGATCCAATCATTAGCCCA 59.926 52.381 15.23 0.00 33.69 5.36
2212 6005 3.011032 GGGATCCAATCATTAGCCCATCT 59.989 47.826 15.23 0.00 34.25 2.90
2371 6184 0.868406 CTTCCACTTTCCGCTCACAC 59.132 55.000 0.00 0.00 0.00 3.82
2630 6453 0.107703 TTAGCTCCATGGCTTCCGTG 60.108 55.000 6.96 0.00 42.97 4.94
2691 6514 5.398353 CCCCTCAACATCCTCATGTAAGAAT 60.398 44.000 0.00 0.00 42.89 2.40
2737 6561 1.952296 CCATCCACCTCTGCTATTTGC 59.048 52.381 0.00 0.00 43.25 3.68
2757 6581 4.132336 TGCATCCATCAAGAATGCTCTAC 58.868 43.478 7.92 0.00 38.88 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.722034 TTCTTCTGCTGAGGACCTGT 58.278 50.000 0.00 0.00 0.00 4.00
65 72 1.363744 GGACTCTGCATCGTTTCCAG 58.636 55.000 0.00 0.00 0.00 3.86
70 77 2.579201 CCGGGACTCTGCATCGTT 59.421 61.111 0.00 0.00 0.00 3.85
124 131 0.537188 CCTTCCAGTACCGTGAGCAT 59.463 55.000 0.00 0.00 0.00 3.79
130 137 0.605589 GCAAAGCCTTCCAGTACCGT 60.606 55.000 0.00 0.00 0.00 4.83
170 177 1.218316 CGGGTCAAGGAGGCTACAC 59.782 63.158 0.00 0.00 0.00 2.90
171 178 1.987855 CCGGGTCAAGGAGGCTACA 60.988 63.158 0.00 0.00 0.00 2.74
172 179 2.901042 CCGGGTCAAGGAGGCTAC 59.099 66.667 0.00 0.00 0.00 3.58
173 180 3.081409 GCCGGGTCAAGGAGGCTA 61.081 66.667 2.18 0.00 45.67 3.93
192 199 1.889829 CAAGACCGGAGACTGAGTTCT 59.110 52.381 9.46 0.00 0.00 3.01
196 203 1.133407 GCTACAAGACCGGAGACTGAG 59.867 57.143 9.46 0.00 0.00 3.35
203 210 1.174783 GTCTCAGCTACAAGACCGGA 58.825 55.000 9.46 0.00 36.69 5.14
240 247 6.411492 GTCGACAAACAAAAATACGCTACAAA 59.589 34.615 11.55 0.00 0.00 2.83
241 248 5.902981 GTCGACAAACAAAAATACGCTACAA 59.097 36.000 11.55 0.00 0.00 2.41
308 316 9.630098 CTTGATAAAGTTCACAGCAACAAATAT 57.370 29.630 0.00 0.00 0.00 1.28
442 450 6.484308 CCTTTTTCCTTTCTCAAATGTTGCAT 59.516 34.615 0.00 0.00 0.00 3.96
496 513 2.333926 CGAAATTGTCGTGTAGGCTGA 58.666 47.619 0.00 0.00 45.09 4.26
507 524 3.115736 CGCTTGTTTCGAACGAAATTGTC 59.884 43.478 21.75 11.71 44.52 3.18
586 611 8.512956 CAGCAGATGATAGATTATTTCCAAAGG 58.487 37.037 0.00 0.00 0.00 3.11
591 616 6.403418 GCTGCAGCAGATGATAGATTATTTCC 60.403 42.308 33.36 0.00 41.59 3.13
592 617 6.544622 GCTGCAGCAGATGATAGATTATTTC 58.455 40.000 33.36 0.00 41.59 2.17
593 618 6.497785 GCTGCAGCAGATGATAGATTATTT 57.502 37.500 33.36 0.00 41.59 1.40
616 641 2.146342 CAAGTAGGCACTCCACTTGTG 58.854 52.381 13.50 0.00 41.40 3.33
657 689 3.428316 GCAAGGAACGTTCTCCAAACAAA 60.428 43.478 26.32 0.00 38.02 2.83
664 696 1.566018 CGGTGCAAGGAACGTTCTCC 61.566 60.000 26.32 13.18 35.51 3.71
775 811 4.556697 TCTGGATTATCTTACTGGCCTCA 58.443 43.478 3.32 0.00 0.00 3.86
964 1010 4.893601 TGTCGCGGCGTTGGTTGA 62.894 61.111 22.90 0.00 0.00 3.18
990 1036 2.509336 CCAGACATCGGCGGTGAC 60.509 66.667 29.09 21.53 0.00 3.67
1128 1176 1.881973 GTGTTGAGCTGCTTGATGGAA 59.118 47.619 2.53 0.00 0.00 3.53
1771 5556 7.278461 TCTAGGAATCCTTCTTATCTTCGTG 57.722 40.000 7.30 0.00 34.61 4.35
1800 5585 4.719369 AGAACACTCGGACGGCGC 62.719 66.667 6.90 0.00 0.00 6.53
1808 5593 1.462283 CAGCCATCACAAGAACACTCG 59.538 52.381 0.00 0.00 0.00 4.18
1809 5594 2.225019 CACAGCCATCACAAGAACACTC 59.775 50.000 0.00 0.00 0.00 3.51
1817 5602 1.298157 GCTACGCACAGCCATCACAA 61.298 55.000 0.00 0.00 35.40 3.33
1831 5616 1.966493 AAAGATGCAACGCGGCTACG 61.966 55.000 12.47 0.00 44.63 3.51
1832 5617 0.168128 AAAAGATGCAACGCGGCTAC 59.832 50.000 12.47 3.79 34.04 3.58
1833 5618 1.395608 GTAAAAGATGCAACGCGGCTA 59.604 47.619 12.47 0.00 34.04 3.93
1834 5619 0.168128 GTAAAAGATGCAACGCGGCT 59.832 50.000 12.47 0.00 34.04 5.52
1847 5632 7.440523 AAGCAACAATCTACTGGAGTAAAAG 57.559 36.000 0.00 0.00 0.00 2.27
1862 5650 4.687976 AGGGAAGGGATTAAAGCAACAAT 58.312 39.130 0.00 0.00 0.00 2.71
1873 5661 5.155161 GGCCAAAATATTAGGGAAGGGATT 58.845 41.667 0.00 0.00 0.00 3.01
1874 5662 4.171841 TGGCCAAAATATTAGGGAAGGGAT 59.828 41.667 0.61 0.00 0.00 3.85
1916 5705 4.122776 GTTCCATTCGCTGACATCTACAT 58.877 43.478 0.00 0.00 0.00 2.29
1917 5706 3.195610 AGTTCCATTCGCTGACATCTACA 59.804 43.478 0.00 0.00 0.00 2.74
1920 5709 2.625737 CAGTTCCATTCGCTGACATCT 58.374 47.619 0.00 0.00 32.39 2.90
1963 5752 2.127906 CACAAACGTACGTGCGCC 60.128 61.111 26.01 0.00 34.88 6.53
1982 5775 3.403038 ACATTCAAACTCAAGAGTCCCG 58.597 45.455 2.78 0.00 41.58 5.14
2102 5895 8.840321 GCCAAGCTCTATTTCTTTATGACAATA 58.160 33.333 0.00 0.00 0.00 1.90
2105 5898 6.179756 TGCCAAGCTCTATTTCTTTATGACA 58.820 36.000 0.00 0.00 0.00 3.58
2116 5909 1.280133 TCAGCACTGCCAAGCTCTATT 59.720 47.619 0.00 0.00 39.50 1.73
2157 5950 5.842843 CGTTGTAACATACTCCGTATACTCG 59.157 44.000 0.56 0.00 0.00 4.18
2158 5951 6.719365 ACGTTGTAACATACTCCGTATACTC 58.281 40.000 0.56 0.00 35.25 2.59
2159 5952 6.510157 CGACGTTGTAACATACTCCGTATACT 60.510 42.308 0.56 0.00 36.42 2.12
2162 5955 4.496341 CCGACGTTGTAACATACTCCGTAT 60.496 45.833 1.30 0.00 36.42 3.06
2163 5956 3.181511 CCGACGTTGTAACATACTCCGTA 60.182 47.826 1.30 0.00 36.42 4.02
2164 5957 2.414559 CCGACGTTGTAACATACTCCGT 60.415 50.000 1.30 5.27 38.01 4.69
2165 5958 2.159531 TCCGACGTTGTAACATACTCCG 60.160 50.000 1.30 0.00 0.00 4.63
2166 5959 3.492421 TCCGACGTTGTAACATACTCC 57.508 47.619 1.30 0.00 0.00 3.85
2167 5960 4.203764 CGATTCCGACGTTGTAACATACTC 59.796 45.833 1.30 0.00 38.22 2.59
2168 5961 4.100529 CGATTCCGACGTTGTAACATACT 58.899 43.478 1.30 0.00 38.22 2.12
2169 5962 3.241322 CCGATTCCGACGTTGTAACATAC 59.759 47.826 1.30 0.00 38.22 2.39
2170 5963 3.437428 CCGATTCCGACGTTGTAACATA 58.563 45.455 1.30 0.00 38.22 2.29
2173 5966 0.994263 CCCGATTCCGACGTTGTAAC 59.006 55.000 1.30 0.00 38.22 2.50
2192 5985 4.914983 TCAGATGGGCTAATGATTGGATC 58.085 43.478 0.00 0.00 0.00 3.36
2209 6002 0.239347 GCAGCGCAACAAGTTCAGAT 59.761 50.000 11.47 0.00 0.00 2.90
2212 6005 1.356270 CAGCAGCGCAACAAGTTCA 59.644 52.632 11.47 0.00 0.00 3.18
2328 6141 0.963856 TACCTGTGATGACGGCGACT 60.964 55.000 16.62 0.00 0.00 4.18
2371 6184 2.172372 GCATGCTGAGAGCTCACCG 61.172 63.158 17.77 7.40 42.97 4.94
2380 6193 0.805322 GACGAGGACAGCATGCTGAG 60.805 60.000 45.50 31.20 46.30 3.35
2444 6267 4.803426 CCTCTCGACGCACCTGCC 62.803 72.222 0.00 0.00 37.91 4.85
2559 6382 4.593864 GCGGATCTCGGCCTGGAC 62.594 72.222 0.00 0.00 39.69 4.02
2630 6453 1.299773 CTCTGCGGCGAATCTCCTC 60.300 63.158 12.98 0.00 0.00 3.71
2691 6514 5.432645 TGTTGTTGTGGATGTGTTCTTAGA 58.567 37.500 0.00 0.00 0.00 2.10
2737 6561 5.587443 TGTTGTAGAGCATTCTTGATGGATG 59.413 40.000 0.00 0.00 36.21 3.51
2738 6562 5.748402 TGTTGTAGAGCATTCTTGATGGAT 58.252 37.500 0.00 0.00 36.21 3.41
2739 6563 5.046376 TCTGTTGTAGAGCATTCTTGATGGA 60.046 40.000 0.00 0.00 36.21 3.41
2740 6564 5.181009 TCTGTTGTAGAGCATTCTTGATGG 58.819 41.667 0.00 0.00 36.21 3.51
2757 6581 1.466167 CCAATGGCGAGTTCTCTGTTG 59.534 52.381 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.