Multiple sequence alignment - TraesCS1B01G221000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G221000 chr1B 100.000 2627 0 0 1 2627 397996052 397993426 0.000000e+00 4852.0
1 TraesCS1B01G221000 chr1B 93.069 101 7 0 73 173 397995871 397995971 5.860000e-32 148.0
2 TraesCS1B01G221000 chr1D 94.233 1526 56 15 600 2110 296480084 296478576 0.000000e+00 2302.0
3 TraesCS1B01G221000 chr1D 94.737 57 2 1 8 63 296480463 296480407 1.300000e-13 87.9
4 TraesCS1B01G221000 chr1D 97.368 38 1 0 387 424 296480282 296480245 6.070000e-07 65.8
5 TraesCS1B01G221000 chr1A 93.866 1239 43 18 609 1838 369273627 369272413 0.000000e+00 1836.0
6 TraesCS1B01G221000 chr1A 88.418 354 12 8 1287 1637 369271062 369270735 1.460000e-107 399.0
7 TraesCS1B01G221000 chr1A 93.846 65 4 0 8 72 369274026 369273962 5.980000e-17 99.0
8 TraesCS1B01G221000 chr1A 85.567 97 5 3 386 482 369273863 369273776 2.780000e-15 93.5
9 TraesCS1B01G221000 chr2D 94.940 415 21 0 2213 2627 5154045 5154459 0.000000e+00 651.0
10 TraesCS1B01G221000 chr2D 94.217 415 23 1 2213 2627 547803686 547803273 1.330000e-177 632.0
11 TraesCS1B01G221000 chr2D 93.112 421 28 1 2208 2627 165537710 165538130 1.340000e-172 616.0
12 TraesCS1B01G221000 chr4D 93.947 413 25 0 2215 2627 116790541 116790953 2.220000e-175 625.0
13 TraesCS1B01G221000 chr4D 93.253 415 28 0 2213 2627 5529307 5528893 1.730000e-171 612.0
14 TraesCS1B01G221000 chr6D 93.735 415 26 0 2213 2627 465424378 465424792 7.980000e-175 623.0
15 TraesCS1B01G221000 chrUn 93.333 420 27 1 2208 2627 190746366 190745948 1.030000e-173 619.0
16 TraesCS1B01G221000 chrUn 93.253 415 28 0 2213 2627 90496980 90496566 1.730000e-171 612.0
17 TraesCS1B01G221000 chrUn 93.913 115 2 2 74 187 471088286 471088176 4.500000e-38 169.0
18 TraesCS1B01G221000 chrUn 92.857 98 3 1 79 176 471088188 471088281 3.530000e-29 139.0
19 TraesCS1B01G221000 chr3D 93.494 415 26 1 2213 2627 551251780 551251367 1.340000e-172 616.0
20 TraesCS1B01G221000 chr3B 93.913 115 3 1 73 183 718798455 718798341 1.250000e-38 171.0
21 TraesCS1B01G221000 chr3B 89.655 116 7 1 72 182 494397949 494398064 2.730000e-30 143.0
22 TraesCS1B01G221000 chr7A 94.595 111 2 2 72 182 293303593 293303699 4.500000e-38 169.0
23 TraesCS1B01G221000 chr7A 89.189 111 8 2 72 182 293303700 293303594 4.560000e-28 135.0
24 TraesCS1B01G221000 chr6B 91.509 106 4 3 77 182 260119005 260119105 9.800000e-30 141.0
25 TraesCS1B01G221000 chr6B 89.474 95 5 3 82 176 260119096 260119007 5.940000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G221000 chr1B 397993426 397996052 2626 True 4852.000000 4852 100.00000 1 2627 1 chr1B.!!$R1 2626
1 TraesCS1B01G221000 chr1D 296478576 296480463 1887 True 818.566667 2302 95.44600 8 2110 3 chr1D.!!$R1 2102
2 TraesCS1B01G221000 chr1A 369270735 369274026 3291 True 606.875000 1836 90.42425 8 1838 4 chr1A.!!$R1 1830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 915 0.028902 TCGATCATACAGCACCGTCG 59.971 55.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2362 3421 0.034186 TCTGCGCCCCTTCATCAATT 60.034 50.0 4.18 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.382147 GGAGGGTTTAGTCTACTTCAGCTG 60.382 50.000 7.63 7.63 0.00 4.24
64 65 4.161102 AGGGTTTAGTCTACTTCAGCTGT 58.839 43.478 14.67 0.00 0.00 4.40
65 66 4.021016 AGGGTTTAGTCTACTTCAGCTGTG 60.021 45.833 14.67 10.57 0.00 3.66
66 67 4.021368 GGGTTTAGTCTACTTCAGCTGTGA 60.021 45.833 14.67 2.90 0.00 3.58
67 68 5.164954 GGTTTAGTCTACTTCAGCTGTGAG 58.835 45.833 14.67 15.01 32.98 3.51
68 69 5.279056 GGTTTAGTCTACTTCAGCTGTGAGT 60.279 44.000 22.49 22.49 32.98 3.41
69 70 6.072064 GGTTTAGTCTACTTCAGCTGTGAGTA 60.072 42.308 22.37 22.37 32.98 2.59
70 71 6.497785 TTAGTCTACTTCAGCTGTGAGTAC 57.502 41.667 20.94 17.01 32.98 2.73
71 72 4.658063 AGTCTACTTCAGCTGTGAGTACT 58.342 43.478 20.94 18.37 32.98 2.73
72 73 4.457603 AGTCTACTTCAGCTGTGAGTACTG 59.542 45.833 20.94 15.33 32.98 2.74
73 74 3.759086 TCTACTTCAGCTGTGAGTACTGG 59.241 47.826 20.94 14.85 32.98 4.00
74 75 2.598565 ACTTCAGCTGTGAGTACTGGA 58.401 47.619 19.22 0.00 32.98 3.86
75 76 2.297597 ACTTCAGCTGTGAGTACTGGAC 59.702 50.000 19.22 0.00 32.98 4.02
76 77 0.881796 TCAGCTGTGAGTACTGGACG 59.118 55.000 14.67 0.00 32.19 4.79
77 78 0.881796 CAGCTGTGAGTACTGGACGA 59.118 55.000 5.25 0.00 0.00 4.20
78 79 1.135546 CAGCTGTGAGTACTGGACGAG 60.136 57.143 5.25 0.00 0.00 4.18
79 80 0.171455 GCTGTGAGTACTGGACGAGG 59.829 60.000 0.00 0.00 0.00 4.63
80 81 1.535833 CTGTGAGTACTGGACGAGGT 58.464 55.000 0.00 0.00 0.00 3.85
81 82 1.887198 CTGTGAGTACTGGACGAGGTT 59.113 52.381 0.00 0.00 0.00 3.50
82 83 1.884579 TGTGAGTACTGGACGAGGTTC 59.115 52.381 0.00 0.00 0.00 3.62
83 84 1.201880 GTGAGTACTGGACGAGGTTCC 59.798 57.143 0.00 0.00 36.03 3.62
84 85 1.075050 TGAGTACTGGACGAGGTTCCT 59.925 52.381 0.00 0.00 36.51 3.36
85 86 1.744522 GAGTACTGGACGAGGTTCCTC 59.255 57.143 0.00 8.66 36.51 3.71
86 87 1.355043 AGTACTGGACGAGGTTCCTCT 59.645 52.381 15.60 4.36 36.51 3.69
87 88 1.473278 GTACTGGACGAGGTTCCTCTG 59.527 57.143 15.60 11.62 36.51 3.35
88 89 0.112606 ACTGGACGAGGTTCCTCTGA 59.887 55.000 15.60 0.00 36.51 3.27
89 90 0.528470 CTGGACGAGGTTCCTCTGAC 59.472 60.000 15.60 9.76 36.51 3.51
90 91 1.241990 TGGACGAGGTTCCTCTGACG 61.242 60.000 15.60 6.70 36.51 4.35
91 92 1.242665 GGACGAGGTTCCTCTGACGT 61.243 60.000 15.60 9.60 36.71 4.34
92 93 1.446907 GACGAGGTTCCTCTGACGTA 58.553 55.000 15.60 0.00 34.26 3.57
93 94 1.130186 GACGAGGTTCCTCTGACGTAC 59.870 57.143 15.60 2.42 34.26 3.67
94 95 1.271271 ACGAGGTTCCTCTGACGTACT 60.271 52.381 15.60 0.00 32.42 2.73
95 96 1.130749 CGAGGTTCCTCTGACGTACTG 59.869 57.143 15.60 0.00 0.00 2.74
96 97 0.889306 AGGTTCCTCTGACGTACTGC 59.111 55.000 0.00 0.00 0.00 4.40
97 98 0.601558 GGTTCCTCTGACGTACTGCA 59.398 55.000 0.00 0.00 0.00 4.41
98 99 1.402984 GGTTCCTCTGACGTACTGCAG 60.403 57.143 13.48 13.48 0.00 4.41
99 100 0.888619 TTCCTCTGACGTACTGCAGG 59.111 55.000 19.93 2.38 33.05 4.85
100 101 0.965866 TCCTCTGACGTACTGCAGGG 60.966 60.000 19.93 9.39 33.05 4.45
101 102 1.153745 CTCTGACGTACTGCAGGGC 60.154 63.158 19.93 9.18 33.05 5.19
102 103 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
103 104 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
118 119 3.357079 CGCAGTTGGGCCACTGAC 61.357 66.667 28.71 17.09 46.29 3.51
119 120 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
120 121 2.263741 GCAGTTGGGCCACTGACAG 61.264 63.158 28.71 15.14 46.29 3.51
121 122 1.601759 CAGTTGGGCCACTGACAGG 60.602 63.158 23.45 7.08 46.29 4.00
122 123 2.078665 AGTTGGGCCACTGACAGGT 61.079 57.895 5.23 0.00 0.00 4.00
123 124 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
129 130 4.351054 CACTGACAGGTGGGCCCC 62.351 72.222 22.27 10.91 33.95 5.80
141 142 4.351054 GGCCCCCACCTGTCAGTG 62.351 72.222 0.00 0.00 37.51 3.66
147 148 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
148 149 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
149 150 2.078665 ACCTGTCAGTGGCCCAACT 61.079 57.895 0.00 0.00 0.00 3.16
151 152 2.203337 TGTCAGTGGCCCAACTGC 60.203 61.111 16.60 12.53 45.93 4.40
152 153 3.357079 GTCAGTGGCCCAACTGCG 61.357 66.667 16.60 0.00 45.93 5.18
167 168 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
168 169 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
171 172 2.579201 CCTGCAGTACGTCAGGGG 59.421 66.667 21.58 5.35 44.64 4.79
172 173 1.982395 CCTGCAGTACGTCAGGGGA 60.982 63.158 21.58 0.00 44.64 4.81
173 174 1.513158 CTGCAGTACGTCAGGGGAG 59.487 63.158 5.25 0.00 0.00 4.30
174 175 2.184579 GCAGTACGTCAGGGGAGC 59.815 66.667 0.00 0.00 0.00 4.70
175 176 2.893398 CAGTACGTCAGGGGAGCC 59.107 66.667 0.00 0.00 0.00 4.70
176 177 2.754658 AGTACGTCAGGGGAGCCG 60.755 66.667 0.00 0.00 0.00 5.52
177 178 2.753043 GTACGTCAGGGGAGCCGA 60.753 66.667 0.00 0.00 0.00 5.54
178 179 2.439701 TACGTCAGGGGAGCCGAG 60.440 66.667 0.00 0.00 0.00 4.63
179 180 3.278072 TACGTCAGGGGAGCCGAGT 62.278 63.158 0.00 0.00 0.00 4.18
180 181 3.827898 CGTCAGGGGAGCCGAGTC 61.828 72.222 0.00 0.00 0.00 3.36
181 182 3.462678 GTCAGGGGAGCCGAGTCC 61.463 72.222 0.00 0.00 35.64 3.85
198 199 2.497675 AGTCCGTGAGTACTACTACCGA 59.502 50.000 0.00 0.00 0.00 4.69
228 229 7.671302 TCGCTAATCTCCTAATCTTAAGCAAT 58.329 34.615 0.00 0.00 0.00 3.56
282 288 5.833131 TCTCTCTACAAACTTGGCCAAAATT 59.167 36.000 20.91 14.00 0.00 1.82
283 289 7.001674 TCTCTCTACAAACTTGGCCAAAATTA 58.998 34.615 20.91 5.79 0.00 1.40
284 290 6.977213 TCTCTACAAACTTGGCCAAAATTAC 58.023 36.000 20.91 0.00 0.00 1.89
286 292 7.286775 TCTCTACAAACTTGGCCAAAATTACTT 59.713 33.333 20.91 7.32 0.00 2.24
288 294 8.915036 TCTACAAACTTGGCCAAAATTACTTTA 58.085 29.630 20.91 2.97 0.00 1.85
289 295 9.535878 CTACAAACTTGGCCAAAATTACTTTAA 57.464 29.630 20.91 0.00 0.00 1.52
290 296 8.794335 ACAAACTTGGCCAAAATTACTTTAAA 57.206 26.923 20.91 0.00 0.00 1.52
291 297 9.232473 ACAAACTTGGCCAAAATTACTTTAAAA 57.768 25.926 20.91 0.00 0.00 1.52
316 322 8.510132 AAAAACGTTGCCAAAATATACAGTAC 57.490 30.769 0.00 0.00 0.00 2.73
318 324 6.657836 ACGTTGCCAAAATATACAGTACTC 57.342 37.500 0.00 0.00 0.00 2.59
319 325 5.583457 ACGTTGCCAAAATATACAGTACTCC 59.417 40.000 0.00 0.00 0.00 3.85
321 327 5.968676 TGCCAAAATATACAGTACTCCCT 57.031 39.130 0.00 0.00 0.00 4.20
322 328 5.925509 TGCCAAAATATACAGTACTCCCTC 58.074 41.667 0.00 0.00 0.00 4.30
323 329 5.163237 TGCCAAAATATACAGTACTCCCTCC 60.163 44.000 0.00 0.00 0.00 4.30
324 330 5.539048 CCAAAATATACAGTACTCCCTCCG 58.461 45.833 0.00 0.00 0.00 4.63
326 332 6.014499 CCAAAATATACAGTACTCCCTCCGAT 60.014 42.308 0.00 0.00 0.00 4.18
327 333 6.837471 AAATATACAGTACTCCCTCCGATC 57.163 41.667 0.00 0.00 0.00 3.69
328 334 5.782677 ATATACAGTACTCCCTCCGATCT 57.217 43.478 0.00 0.00 0.00 2.75
329 335 2.060050 ACAGTACTCCCTCCGATCTG 57.940 55.000 0.00 0.00 0.00 2.90
330 336 1.564818 ACAGTACTCCCTCCGATCTGA 59.435 52.381 0.00 0.00 0.00 3.27
331 337 2.025226 ACAGTACTCCCTCCGATCTGAA 60.025 50.000 0.00 0.00 0.00 3.02
332 338 3.024547 CAGTACTCCCTCCGATCTGAAA 58.975 50.000 0.00 0.00 0.00 2.69
333 339 3.639094 CAGTACTCCCTCCGATCTGAAAT 59.361 47.826 0.00 0.00 0.00 2.17
334 340 4.827835 CAGTACTCCCTCCGATCTGAAATA 59.172 45.833 0.00 0.00 0.00 1.40
335 341 5.302059 CAGTACTCCCTCCGATCTGAAATAA 59.698 44.000 0.00 0.00 0.00 1.40
336 342 4.946478 ACTCCCTCCGATCTGAAATAAG 57.054 45.455 0.00 0.00 0.00 1.73
337 343 4.290942 ACTCCCTCCGATCTGAAATAAGT 58.709 43.478 0.00 0.00 0.00 2.24
338 344 4.100189 ACTCCCTCCGATCTGAAATAAGTG 59.900 45.833 0.00 0.00 0.00 3.16
339 345 4.030913 TCCCTCCGATCTGAAATAAGTGT 58.969 43.478 0.00 0.00 0.00 3.55
340 346 4.099573 TCCCTCCGATCTGAAATAAGTGTC 59.900 45.833 0.00 0.00 0.00 3.67
341 347 4.372656 CCTCCGATCTGAAATAAGTGTCC 58.627 47.826 0.00 0.00 0.00 4.02
342 348 4.372656 CTCCGATCTGAAATAAGTGTCCC 58.627 47.826 0.00 0.00 0.00 4.46
343 349 4.030913 TCCGATCTGAAATAAGTGTCCCT 58.969 43.478 0.00 0.00 0.00 4.20
344 350 4.122776 CCGATCTGAAATAAGTGTCCCTG 58.877 47.826 0.00 0.00 0.00 4.45
345 351 4.383118 CCGATCTGAAATAAGTGTCCCTGT 60.383 45.833 0.00 0.00 0.00 4.00
346 352 5.178797 CGATCTGAAATAAGTGTCCCTGTT 58.821 41.667 0.00 0.00 0.00 3.16
347 353 5.643777 CGATCTGAAATAAGTGTCCCTGTTT 59.356 40.000 0.00 0.00 0.00 2.83
348 354 6.816640 CGATCTGAAATAAGTGTCCCTGTTTA 59.183 38.462 0.00 0.00 0.00 2.01
349 355 7.495934 CGATCTGAAATAAGTGTCCCTGTTTAT 59.504 37.037 0.00 0.00 0.00 1.40
350 356 9.178758 GATCTGAAATAAGTGTCCCTGTTTATT 57.821 33.333 0.00 0.00 0.00 1.40
351 357 8.561738 TCTGAAATAAGTGTCCCTGTTTATTC 57.438 34.615 0.00 0.00 0.00 1.75
352 358 8.160765 TCTGAAATAAGTGTCCCTGTTTATTCA 58.839 33.333 0.00 0.00 0.00 2.57
353 359 8.698973 TGAAATAAGTGTCCCTGTTTATTCAA 57.301 30.769 0.00 0.00 0.00 2.69
354 360 9.137459 TGAAATAAGTGTCCCTGTTTATTCAAA 57.863 29.630 0.00 0.00 0.00 2.69
355 361 9.974980 GAAATAAGTGTCCCTGTTTATTCAAAA 57.025 29.630 0.00 0.00 0.00 2.44
356 362 9.758651 AAATAAGTGTCCCTGTTTATTCAAAAC 57.241 29.630 0.00 0.00 0.00 2.43
357 363 8.706322 ATAAGTGTCCCTGTTTATTCAAAACT 57.294 30.769 2.67 0.00 0.00 2.66
358 364 6.391227 AGTGTCCCTGTTTATTCAAAACTG 57.609 37.500 2.67 2.21 0.00 3.16
359 365 4.982295 GTGTCCCTGTTTATTCAAAACTGC 59.018 41.667 2.67 0.00 0.00 4.40
360 366 4.226761 GTCCCTGTTTATTCAAAACTGCG 58.773 43.478 2.67 0.00 0.00 5.18
361 367 4.023536 GTCCCTGTTTATTCAAAACTGCGA 60.024 41.667 2.67 0.00 0.00 5.10
362 368 4.023536 TCCCTGTTTATTCAAAACTGCGAC 60.024 41.667 2.67 0.00 0.00 5.19
363 369 4.261405 CCCTGTTTATTCAAAACTGCGACA 60.261 41.667 2.67 0.00 0.00 4.35
364 370 4.675114 CCTGTTTATTCAAAACTGCGACAC 59.325 41.667 2.67 0.00 0.00 3.67
365 371 4.602995 TGTTTATTCAAAACTGCGACACC 58.397 39.130 2.67 0.00 0.00 4.16
366 372 4.336993 TGTTTATTCAAAACTGCGACACCT 59.663 37.500 2.67 0.00 0.00 4.00
367 373 5.527951 TGTTTATTCAAAACTGCGACACCTA 59.472 36.000 2.67 0.00 0.00 3.08
368 374 6.205853 TGTTTATTCAAAACTGCGACACCTAT 59.794 34.615 2.67 0.00 0.00 2.57
369 375 6.811253 TTATTCAAAACTGCGACACCTATT 57.189 33.333 0.00 0.00 0.00 1.73
370 376 5.705609 ATTCAAAACTGCGACACCTATTT 57.294 34.783 0.00 0.00 0.00 1.40
371 377 5.508200 TTCAAAACTGCGACACCTATTTT 57.492 34.783 0.00 0.00 0.00 1.82
372 378 4.854399 TCAAAACTGCGACACCTATTTTG 58.146 39.130 0.00 0.00 38.03 2.44
373 379 3.915437 AAACTGCGACACCTATTTTGG 57.085 42.857 0.00 0.00 0.00 3.28
374 380 2.851263 ACTGCGACACCTATTTTGGA 57.149 45.000 0.00 0.00 0.00 3.53
375 381 3.350219 ACTGCGACACCTATTTTGGAT 57.650 42.857 0.00 0.00 0.00 3.41
376 382 4.481368 ACTGCGACACCTATTTTGGATA 57.519 40.909 0.00 0.00 0.00 2.59
377 383 4.442706 ACTGCGACACCTATTTTGGATAG 58.557 43.478 0.00 0.00 0.00 2.08
378 384 3.804036 TGCGACACCTATTTTGGATAGG 58.196 45.455 9.89 9.89 45.12 2.57
379 385 3.452990 TGCGACACCTATTTTGGATAGGA 59.547 43.478 16.75 0.00 42.90 2.94
380 386 4.058817 GCGACACCTATTTTGGATAGGAG 58.941 47.826 16.75 12.03 42.90 3.69
381 387 4.632153 CGACACCTATTTTGGATAGGAGG 58.368 47.826 16.75 11.19 42.90 4.30
382 388 4.503296 CGACACCTATTTTGGATAGGAGGG 60.503 50.000 16.75 9.27 42.90 4.30
383 389 4.641868 ACACCTATTTTGGATAGGAGGGA 58.358 43.478 16.75 0.00 42.90 4.20
384 390 4.660771 ACACCTATTTTGGATAGGAGGGAG 59.339 45.833 16.75 5.76 42.90 4.30
385 391 4.660771 CACCTATTTTGGATAGGAGGGAGT 59.339 45.833 16.75 0.00 42.90 3.85
427 464 9.807649 AATGAAACATTATATTTCCTGTTGAGC 57.192 29.630 0.00 0.00 35.57 4.26
435 472 2.770164 TTCCTGTTGAGCCTAGAAGC 57.230 50.000 0.00 0.00 0.00 3.86
495 544 7.302350 TCACAACCATATACTGTCGATTTTG 57.698 36.000 0.00 0.00 0.00 2.44
497 546 5.065988 ACAACCATATACTGTCGATTTTGCC 59.934 40.000 0.00 0.00 0.00 4.52
498 547 5.036117 ACCATATACTGTCGATTTTGCCT 57.964 39.130 0.00 0.00 0.00 4.75
499 548 4.816385 ACCATATACTGTCGATTTTGCCTG 59.184 41.667 0.00 0.00 0.00 4.85
500 549 5.056480 CCATATACTGTCGATTTTGCCTGA 58.944 41.667 0.00 0.00 0.00 3.86
553 620 2.942879 CGCGTTAAGCTTGCCACA 59.057 55.556 9.86 0.00 45.59 4.17
558 625 2.351738 GCGTTAAGCTTGCCACAGAAAT 60.352 45.455 9.86 0.00 44.04 2.17
559 626 3.857010 GCGTTAAGCTTGCCACAGAAATT 60.857 43.478 9.86 0.00 44.04 1.82
560 627 4.614993 GCGTTAAGCTTGCCACAGAAATTA 60.615 41.667 9.86 0.00 44.04 1.40
561 628 5.088739 CGTTAAGCTTGCCACAGAAATTAG 58.911 41.667 9.86 0.00 0.00 1.73
563 630 4.510038 AAGCTTGCCACAGAAATTAGTG 57.490 40.909 0.00 0.00 35.56 2.74
591 658 6.963049 ATTATCGAAAACATATACCGAGCC 57.037 37.500 0.00 0.00 32.60 4.70
598 665 1.618837 ACATATACCGAGCCGCTCATT 59.381 47.619 20.22 8.42 0.00 2.57
607 682 1.886777 GCCGCTCATTCTCTGCTCC 60.887 63.158 0.00 0.00 0.00 4.70
639 714 3.157087 TCCCACTGAAAATTCCTTGAGC 58.843 45.455 0.00 0.00 0.00 4.26
825 908 2.726373 CGGACTCGATCGATCATACAGC 60.726 54.545 24.40 8.49 39.00 4.40
828 911 2.030717 ACTCGATCGATCATACAGCACC 60.031 50.000 24.40 0.00 0.00 5.01
831 914 2.320367 GATCGATCATACAGCACCGTC 58.680 52.381 20.52 0.00 0.00 4.79
832 915 0.028902 TCGATCATACAGCACCGTCG 59.971 55.000 0.00 0.00 0.00 5.12
843 929 1.734465 AGCACCGTCGTACTACAGTAC 59.266 52.381 9.11 9.11 45.47 2.73
868 954 3.265791 ACATTGCACTCTTTCTCCGATC 58.734 45.455 0.00 0.00 0.00 3.69
943 1031 0.389817 TCGACGCAACAATAGCTGCT 60.390 50.000 7.57 7.57 34.73 4.24
944 1032 1.135228 TCGACGCAACAATAGCTGCTA 60.135 47.619 12.40 12.40 34.73 3.49
945 1033 1.005975 CGACGCAACAATAGCTGCTAC 60.006 52.381 12.26 0.00 34.73 3.58
946 1034 0.999406 ACGCAACAATAGCTGCTACG 59.001 50.000 12.26 12.03 34.73 3.51
1176 1264 2.544359 CGGCACTTCAACGTCACG 59.456 61.111 0.00 0.00 0.00 4.35
1177 1265 2.235016 CGGCACTTCAACGTCACGT 61.235 57.895 0.00 0.00 43.97 4.49
1274 1362 3.388134 CGTGTCCATGCGCTACAG 58.612 61.111 9.73 0.00 0.00 2.74
1363 1451 3.177884 ACTTCCACCAGCCCAGCA 61.178 61.111 0.00 0.00 0.00 4.41
1506 1594 2.012051 GCGATCGTCCATTTCCTGGTT 61.012 52.381 17.81 0.00 46.08 3.67
1704 1792 1.235724 GTACTGCAGGGTGTTGGTTC 58.764 55.000 19.93 0.00 0.00 3.62
1742 1832 9.467258 TGCTCTTAATTCTTTGTTTTTGAGATG 57.533 29.630 0.00 0.00 0.00 2.90
1877 2545 1.303236 TTGCAGTGGTTGGATCCCG 60.303 57.895 9.90 0.00 0.00 5.14
1885 2553 0.107848 GGTTGGATCCCGTGACGATT 60.108 55.000 6.54 0.00 0.00 3.34
1920 2588 3.059188 CGTTATCTTCTTGTTGGCGTTGT 60.059 43.478 0.00 0.00 0.00 3.32
1924 2592 4.181309 TCTTCTTGTTGGCGTTGTTTTT 57.819 36.364 0.00 0.00 0.00 1.94
1926 2594 3.577649 TCTTGTTGGCGTTGTTTTTGA 57.422 38.095 0.00 0.00 0.00 2.69
1927 2595 3.506810 TCTTGTTGGCGTTGTTTTTGAG 58.493 40.909 0.00 0.00 0.00 3.02
1928 2596 3.191581 TCTTGTTGGCGTTGTTTTTGAGA 59.808 39.130 0.00 0.00 0.00 3.27
1982 2650 2.746904 TGGTTGATGACGTTATTGCTGG 59.253 45.455 0.00 0.00 0.00 4.85
2008 2676 2.580962 TGCAAGTTGTTGGCTATGTCA 58.419 42.857 4.48 0.00 33.87 3.58
2020 2688 7.370383 TGTTGGCTATGTCAATTTTCTTCTTC 58.630 34.615 0.00 0.00 27.28 2.87
2075 2743 6.889177 TCCCAAATGTCTTGCTTGATATTGTA 59.111 34.615 3.32 0.00 30.19 2.41
2133 2842 5.273674 TCAATCCAATGACAAAACAAGCA 57.726 34.783 0.00 0.00 0.00 3.91
2134 2843 5.049167 TCAATCCAATGACAAAACAAGCAC 58.951 37.500 0.00 0.00 0.00 4.40
2135 2844 4.669206 ATCCAATGACAAAACAAGCACA 57.331 36.364 0.00 0.00 0.00 4.57
2137 2846 4.825422 TCCAATGACAAAACAAGCACAAA 58.175 34.783 0.00 0.00 0.00 2.83
2138 2847 4.629200 TCCAATGACAAAACAAGCACAAAC 59.371 37.500 0.00 0.00 0.00 2.93
2139 2848 4.391216 CCAATGACAAAACAAGCACAAACA 59.609 37.500 0.00 0.00 0.00 2.83
2142 2851 3.006323 TGACAAAACAAGCACAAACACCT 59.994 39.130 0.00 0.00 0.00 4.00
2143 2852 3.324993 ACAAAACAAGCACAAACACCTG 58.675 40.909 0.00 0.00 0.00 4.00
2144 2853 2.008752 AAACAAGCACAAACACCTGC 57.991 45.000 0.00 0.00 0.00 4.85
2145 2854 0.179140 AACAAGCACAAACACCTGCG 60.179 50.000 0.00 0.00 38.51 5.18
2148 2857 1.064803 CAAGCACAAACACCTGCGTTA 59.935 47.619 0.00 0.00 38.51 3.18
2150 2859 1.953686 AGCACAAACACCTGCGTTATT 59.046 42.857 0.00 0.00 38.51 1.40
2151 2860 2.050691 GCACAAACACCTGCGTTATTG 58.949 47.619 0.00 0.00 0.00 1.90
2153 2862 1.953686 ACAAACACCTGCGTTATTGCT 59.046 42.857 0.00 0.00 35.36 3.91
2154 2863 2.360801 ACAAACACCTGCGTTATTGCTT 59.639 40.909 0.00 0.00 35.36 3.91
2155 2864 3.181480 ACAAACACCTGCGTTATTGCTTT 60.181 39.130 0.00 0.00 35.36 3.51
2156 2865 3.726291 AACACCTGCGTTATTGCTTTT 57.274 38.095 0.00 0.00 35.36 2.27
2158 2867 2.884639 ACACCTGCGTTATTGCTTTTCT 59.115 40.909 0.00 0.00 35.36 2.52
2161 2870 5.163754 ACACCTGCGTTATTGCTTTTCTATC 60.164 40.000 0.00 0.00 35.36 2.08
2162 2871 4.941263 ACCTGCGTTATTGCTTTTCTATCA 59.059 37.500 0.00 0.00 35.36 2.15
2164 2873 5.484173 TGCGTTATTGCTTTTCTATCAGG 57.516 39.130 0.00 0.00 35.36 3.86
2165 2874 4.201910 TGCGTTATTGCTTTTCTATCAGGC 60.202 41.667 0.00 0.00 35.36 4.85
2166 2875 4.518217 CGTTATTGCTTTTCTATCAGGCG 58.482 43.478 0.00 0.00 0.00 5.52
2167 2876 4.282873 GTTATTGCTTTTCTATCAGGCGC 58.717 43.478 0.00 0.00 0.00 6.53
2168 2877 2.113860 TTGCTTTTCTATCAGGCGCT 57.886 45.000 7.64 0.00 0.00 5.92
2169 2878 2.979814 TGCTTTTCTATCAGGCGCTA 57.020 45.000 7.64 0.00 0.00 4.26
2170 2879 3.475566 TGCTTTTCTATCAGGCGCTAT 57.524 42.857 7.64 1.12 0.00 2.97
2171 2880 3.393800 TGCTTTTCTATCAGGCGCTATC 58.606 45.455 7.64 0.00 0.00 2.08
2172 2881 3.070159 TGCTTTTCTATCAGGCGCTATCT 59.930 43.478 7.64 0.00 0.00 1.98
2175 2884 2.732412 TCTATCAGGCGCTATCTTGC 57.268 50.000 7.64 0.00 0.00 4.01
2177 2886 2.230025 TCTATCAGGCGCTATCTTGCTC 59.770 50.000 7.64 0.00 0.00 4.26
2178 2887 0.755079 ATCAGGCGCTATCTTGCTCA 59.245 50.000 7.64 0.00 0.00 4.26
2179 2888 0.179100 TCAGGCGCTATCTTGCTCAC 60.179 55.000 7.64 0.00 0.00 3.51
2180 2889 0.179089 CAGGCGCTATCTTGCTCACT 60.179 55.000 7.64 0.00 0.00 3.41
2181 2890 0.103937 AGGCGCTATCTTGCTCACTC 59.896 55.000 7.64 0.00 0.00 3.51
2182 2891 0.179100 GGCGCTATCTTGCTCACTCA 60.179 55.000 7.64 0.00 0.00 3.41
2183 2892 0.926846 GCGCTATCTTGCTCACTCAC 59.073 55.000 0.00 0.00 0.00 3.51
2184 2893 1.195347 CGCTATCTTGCTCACTCACG 58.805 55.000 0.00 0.00 0.00 4.35
2186 2895 1.135139 GCTATCTTGCTCACTCACGGA 59.865 52.381 0.00 0.00 0.00 4.69
2187 2896 2.417379 GCTATCTTGCTCACTCACGGAA 60.417 50.000 0.00 0.00 0.00 4.30
2189 2898 2.370281 TCTTGCTCACTCACGGAATC 57.630 50.000 0.00 0.00 0.00 2.52
2192 2901 2.370281 TGCTCACTCACGGAATCTTC 57.630 50.000 0.00 0.00 0.00 2.87
2193 2902 1.272781 GCTCACTCACGGAATCTTCG 58.727 55.000 0.00 0.00 0.00 3.79
2194 2903 1.914634 CTCACTCACGGAATCTTCGG 58.085 55.000 0.00 0.00 0.00 4.30
2195 2904 1.202582 CTCACTCACGGAATCTTCGGT 59.797 52.381 0.00 0.00 40.75 4.69
2200 2909 0.796312 CACGGAATCTTCGGTGTTGG 59.204 55.000 17.62 0.00 46.84 3.77
2202 2911 1.071071 ACGGAATCTTCGGTGTTGGAA 59.929 47.619 2.74 0.00 38.98 3.53
2203 2912 2.290071 ACGGAATCTTCGGTGTTGGAAT 60.290 45.455 2.74 0.00 38.98 3.01
2205 2914 3.936453 CGGAATCTTCGGTGTTGGAATTA 59.064 43.478 0.00 0.00 0.00 1.40
2206 2915 4.393680 CGGAATCTTCGGTGTTGGAATTAA 59.606 41.667 0.00 0.00 0.00 1.40
2207 2916 5.106475 CGGAATCTTCGGTGTTGGAATTAAA 60.106 40.000 0.00 0.00 0.00 1.52
2209 2918 6.150474 GGAATCTTCGGTGTTGGAATTAAAGA 59.850 38.462 0.00 0.00 0.00 2.52
2210 2919 7.148069 GGAATCTTCGGTGTTGGAATTAAAGAT 60.148 37.037 0.00 0.00 34.58 2.40
2211 2920 6.494893 TCTTCGGTGTTGGAATTAAAGATG 57.505 37.500 0.00 0.00 0.00 2.90
2240 3011 3.567478 AGAAAAAGAGGATGATCCCCG 57.433 47.619 8.08 0.00 37.19 5.73
2241 3012 2.173569 AGAAAAAGAGGATGATCCCCGG 59.826 50.000 8.08 0.00 37.19 5.73
2242 3013 0.183731 AAAAGAGGATGATCCCCGGC 59.816 55.000 8.08 0.00 37.19 6.13
2245 3016 2.527875 AGGATGATCCCCGGCCTC 60.528 66.667 8.08 0.00 37.19 4.70
2246 3017 2.527875 GGATGATCCCCGGCCTCT 60.528 66.667 0.00 0.00 0.00 3.69
2247 3018 2.746359 GATGATCCCCGGCCTCTG 59.254 66.667 0.00 0.00 0.00 3.35
2248 3019 3.543536 GATGATCCCCGGCCTCTGC 62.544 68.421 0.00 0.00 0.00 4.26
2250 3021 3.564218 GATCCCCGGCCTCTGCAT 61.564 66.667 0.00 0.00 40.13 3.96
2251 3022 3.543536 GATCCCCGGCCTCTGCATC 62.544 68.421 0.00 0.00 40.13 3.91
2253 3024 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2254 3025 3.473647 CCCGGCCTCTGCATCTGA 61.474 66.667 0.00 0.00 40.13 3.27
2255 3026 2.586245 CCGGCCTCTGCATCTGAA 59.414 61.111 0.00 0.00 40.13 3.02
2256 3027 1.817099 CCGGCCTCTGCATCTGAAC 60.817 63.158 0.00 0.00 40.13 3.18
2257 3028 2.169789 CGGCCTCTGCATCTGAACG 61.170 63.158 0.00 0.00 40.13 3.95
2274 3045 9.454585 CATCTGAACGATGCATACATTTATTTT 57.545 29.630 0.00 0.00 42.75 1.82
2306 3077 5.755409 TCTCACAAGACCTTATAAAGCCA 57.245 39.130 0.00 0.00 0.00 4.75
2307 3078 6.121776 TCTCACAAGACCTTATAAAGCCAA 57.878 37.500 0.00 0.00 0.00 4.52
2308 3079 6.539173 TCTCACAAGACCTTATAAAGCCAAA 58.461 36.000 0.00 0.00 0.00 3.28
2310 3081 6.065374 TCACAAGACCTTATAAAGCCAAACA 58.935 36.000 0.00 0.00 0.00 2.83
2311 3082 6.547880 TCACAAGACCTTATAAAGCCAAACAA 59.452 34.615 0.00 0.00 0.00 2.83
2312 3083 6.640907 CACAAGACCTTATAAAGCCAAACAAC 59.359 38.462 0.00 0.00 0.00 3.32
2313 3084 6.322712 ACAAGACCTTATAAAGCCAAACAACA 59.677 34.615 0.00 0.00 0.00 3.33
2317 3088 5.069781 ACCTTATAAAGCCAAACAACAGCAA 59.930 36.000 0.00 0.00 0.00 3.91
2318 3089 5.634859 CCTTATAAAGCCAAACAACAGCAAG 59.365 40.000 0.00 0.00 0.00 4.01
2319 3090 4.935352 ATAAAGCCAAACAACAGCAAGA 57.065 36.364 0.00 0.00 0.00 3.02
2322 3093 2.930950 AGCCAAACAACAGCAAGACTA 58.069 42.857 0.00 0.00 0.00 2.59
2323 3094 3.287222 AGCCAAACAACAGCAAGACTAA 58.713 40.909 0.00 0.00 0.00 2.24
2324 3095 3.699038 AGCCAAACAACAGCAAGACTAAA 59.301 39.130 0.00 0.00 0.00 1.85
2325 3096 4.044426 GCCAAACAACAGCAAGACTAAAG 58.956 43.478 0.00 0.00 0.00 1.85
2326 3097 4.044426 CCAAACAACAGCAAGACTAAAGC 58.956 43.478 0.00 0.00 0.00 3.51
2327 3098 3.990318 AACAACAGCAAGACTAAAGCC 57.010 42.857 0.00 0.00 0.00 4.35
2335 3394 2.809696 GCAAGACTAAAGCCACCGTTTA 59.190 45.455 0.00 0.00 0.00 2.01
2337 3396 4.612939 GCAAGACTAAAGCCACCGTTTAAG 60.613 45.833 0.00 0.00 0.00 1.85
2342 3401 1.394618 AAGCCACCGTTTAAGCAACA 58.605 45.000 0.00 0.00 34.68 3.33
2343 3402 1.394618 AGCCACCGTTTAAGCAACAA 58.605 45.000 0.00 0.00 34.68 2.83
2344 3403 1.066454 AGCCACCGTTTAAGCAACAAC 59.934 47.619 0.00 0.00 34.68 3.32
2345 3404 1.066454 GCCACCGTTTAAGCAACAACT 59.934 47.619 0.00 0.00 34.68 3.16
2346 3405 2.726633 CCACCGTTTAAGCAACAACTG 58.273 47.619 0.00 0.00 34.68 3.16
2347 3406 2.098443 CCACCGTTTAAGCAACAACTGT 59.902 45.455 0.00 0.00 34.68 3.55
2361 3420 3.939066 ACAACTGTTGCTACACCTATCC 58.061 45.455 19.82 0.00 0.00 2.59
2362 3421 3.326588 ACAACTGTTGCTACACCTATCCA 59.673 43.478 19.82 0.00 0.00 3.41
2363 3422 4.202419 ACAACTGTTGCTACACCTATCCAA 60.202 41.667 19.82 0.00 0.00 3.53
2365 3424 5.179452 ACTGTTGCTACACCTATCCAATT 57.821 39.130 0.00 0.00 0.00 2.32
2367 3426 5.172687 TGTTGCTACACCTATCCAATTGA 57.827 39.130 7.12 0.00 0.00 2.57
2368 3427 5.754782 TGTTGCTACACCTATCCAATTGAT 58.245 37.500 7.12 1.44 37.49 2.57
2371 3430 6.000246 TGCTACACCTATCCAATTGATGAA 58.000 37.500 7.12 0.00 34.76 2.57
2372 3431 6.057533 TGCTACACCTATCCAATTGATGAAG 58.942 40.000 7.12 0.00 34.76 3.02
2375 3434 4.147321 CACCTATCCAATTGATGAAGGGG 58.853 47.826 7.12 5.55 34.76 4.79
2376 3435 3.160269 CCTATCCAATTGATGAAGGGGC 58.840 50.000 7.12 0.00 34.76 5.80
2379 3438 1.321805 CCAATTGATGAAGGGGCGCA 61.322 55.000 10.83 0.00 0.00 6.09
2380 3439 0.101759 CAATTGATGAAGGGGCGCAG 59.898 55.000 10.83 0.00 0.00 5.18
2381 3440 0.034186 AATTGATGAAGGGGCGCAGA 60.034 50.000 10.83 0.00 0.00 4.26
2383 3442 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
2384 3443 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
2385 3444 0.394565 GATGAAGGGGCGCAGATAGT 59.605 55.000 10.83 0.00 0.00 2.12
2400 3459 6.406692 GCAGATAGTCTGGGTCTAATAACA 57.593 41.667 8.85 0.00 44.43 2.41
2402 3461 7.272978 GCAGATAGTCTGGGTCTAATAACAAA 58.727 38.462 8.85 0.00 44.43 2.83
2403 3462 7.224949 GCAGATAGTCTGGGTCTAATAACAAAC 59.775 40.741 8.85 0.00 44.43 2.93
2404 3463 8.258007 CAGATAGTCTGGGTCTAATAACAAACA 58.742 37.037 0.00 0.00 40.71 2.83
2405 3464 8.478877 AGATAGTCTGGGTCTAATAACAAACAG 58.521 37.037 0.00 0.00 0.00 3.16
2406 3465 6.681729 AGTCTGGGTCTAATAACAAACAGA 57.318 37.500 0.00 0.00 0.00 3.41
2407 3466 6.723131 GTCTGGGTCTAATAACAAACAGAC 57.277 41.667 0.00 0.00 44.28 3.51
2409 3468 7.016153 TCTGGGTCTAATAACAAACAGACAT 57.984 36.000 0.00 0.00 39.33 3.06
2410 3469 7.103641 TCTGGGTCTAATAACAAACAGACATC 58.896 38.462 0.00 0.00 39.33 3.06
2411 3470 5.872617 TGGGTCTAATAACAAACAGACATCG 59.127 40.000 0.00 0.00 39.33 3.84
2413 3472 5.350365 GGTCTAATAACAAACAGACATCGCA 59.650 40.000 0.00 0.00 39.33 5.10
2414 3473 6.455646 GGTCTAATAACAAACAGACATCGCAG 60.456 42.308 0.00 0.00 39.33 5.18
2418 3477 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
2419 3478 1.001487 CAAACAGACATCGCAGCCAAA 60.001 47.619 0.00 0.00 0.00 3.28
2422 3481 0.957395 CAGACATCGCAGCCAAACCT 60.957 55.000 0.00 0.00 0.00 3.50
2423 3482 0.613260 AGACATCGCAGCCAAACCTA 59.387 50.000 0.00 0.00 0.00 3.08
2424 3483 1.003118 AGACATCGCAGCCAAACCTAA 59.997 47.619 0.00 0.00 0.00 2.69
2425 3484 1.810151 GACATCGCAGCCAAACCTAAA 59.190 47.619 0.00 0.00 0.00 1.85
2426 3485 1.539827 ACATCGCAGCCAAACCTAAAC 59.460 47.619 0.00 0.00 0.00 2.01
2427 3486 1.539388 CATCGCAGCCAAACCTAAACA 59.461 47.619 0.00 0.00 0.00 2.83
2428 3487 1.904287 TCGCAGCCAAACCTAAACAT 58.096 45.000 0.00 0.00 0.00 2.71
2429 3488 1.810151 TCGCAGCCAAACCTAAACATC 59.190 47.619 0.00 0.00 0.00 3.06
2430 3489 1.812571 CGCAGCCAAACCTAAACATCT 59.187 47.619 0.00 0.00 0.00 2.90
2431 3490 3.006940 CGCAGCCAAACCTAAACATCTA 58.993 45.455 0.00 0.00 0.00 1.98
2436 3495 5.705441 CAGCCAAACCTAAACATCTAAGACA 59.295 40.000 0.00 0.00 0.00 3.41
2437 3496 6.375455 CAGCCAAACCTAAACATCTAAGACAT 59.625 38.462 0.00 0.00 0.00 3.06
2439 3498 6.374333 GCCAAACCTAAACATCTAAGACATGA 59.626 38.462 0.00 0.00 0.00 3.07
2440 3499 7.414540 GCCAAACCTAAACATCTAAGACATGAG 60.415 40.741 0.00 0.00 0.00 2.90
2441 3500 7.066284 CCAAACCTAAACATCTAAGACATGAGG 59.934 40.741 0.00 0.00 0.00 3.86
2442 3501 6.875972 ACCTAAACATCTAAGACATGAGGT 57.124 37.500 0.00 0.00 0.00 3.85
2458 3517 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
2468 3527 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
2469 3528 4.910585 GACGCCTGCCGGGTATGG 62.911 72.222 2.18 0.00 42.52 2.74
2496 3687 4.803426 CAGTCCGGCGCACTCCTC 62.803 72.222 10.83 0.00 0.00 3.71
2498 3689 4.373116 GTCCGGCGCACTCCTCAA 62.373 66.667 10.83 0.00 0.00 3.02
2499 3690 4.373116 TCCGGCGCACTCCTCAAC 62.373 66.667 10.83 0.00 0.00 3.18
2501 3692 4.680237 CGGCGCACTCCTCAACCA 62.680 66.667 10.83 0.00 0.00 3.67
2503 3694 2.743928 GCGCACTCCTCAACCAGG 60.744 66.667 0.30 0.00 45.15 4.45
2520 3711 3.845259 GACGCCTGCCGGGTATGA 61.845 66.667 2.18 0.00 42.52 2.15
2521 3712 3.792053 GACGCCTGCCGGGTATGAG 62.792 68.421 2.18 0.00 42.52 2.90
2522 3713 4.609018 CGCCTGCCGGGTATGAGG 62.609 72.222 2.18 0.00 37.43 3.86
2549 3740 4.738998 CCACCTGCCGCCAATCCA 62.739 66.667 0.00 0.00 0.00 3.41
2550 3741 2.440796 CACCTGCCGCCAATCCAT 60.441 61.111 0.00 0.00 0.00 3.41
2551 3742 2.440796 ACCTGCCGCCAATCCATG 60.441 61.111 0.00 0.00 0.00 3.66
2552 3743 2.440796 CCTGCCGCCAATCCATGT 60.441 61.111 0.00 0.00 0.00 3.21
2553 3744 2.053865 CCTGCCGCCAATCCATGTT 61.054 57.895 0.00 0.00 0.00 2.71
2554 3745 1.434696 CTGCCGCCAATCCATGTTC 59.565 57.895 0.00 0.00 0.00 3.18
2555 3746 1.303970 TGCCGCCAATCCATGTTCA 60.304 52.632 0.00 0.00 0.00 3.18
2556 3747 1.314534 TGCCGCCAATCCATGTTCAG 61.315 55.000 0.00 0.00 0.00 3.02
2557 3748 1.031571 GCCGCCAATCCATGTTCAGA 61.032 55.000 0.00 0.00 0.00 3.27
2558 3749 1.019673 CCGCCAATCCATGTTCAGAG 58.980 55.000 0.00 0.00 0.00 3.35
2559 3750 1.679944 CCGCCAATCCATGTTCAGAGT 60.680 52.381 0.00 0.00 0.00 3.24
2560 3751 2.086869 CGCCAATCCATGTTCAGAGTT 58.913 47.619 0.00 0.00 0.00 3.01
2561 3752 2.159476 CGCCAATCCATGTTCAGAGTTG 60.159 50.000 0.00 0.00 0.00 3.16
2562 3753 2.821969 GCCAATCCATGTTCAGAGTTGT 59.178 45.455 0.00 0.00 0.00 3.32
2563 3754 4.009675 GCCAATCCATGTTCAGAGTTGTA 58.990 43.478 0.00 0.00 0.00 2.41
2564 3755 4.458989 GCCAATCCATGTTCAGAGTTGTAA 59.541 41.667 0.00 0.00 0.00 2.41
2565 3756 5.126061 GCCAATCCATGTTCAGAGTTGTAAT 59.874 40.000 0.00 0.00 0.00 1.89
2566 3757 6.558009 CCAATCCATGTTCAGAGTTGTAATG 58.442 40.000 0.00 0.00 0.00 1.90
2567 3758 6.151648 CCAATCCATGTTCAGAGTTGTAATGT 59.848 38.462 0.00 0.00 0.00 2.71
2568 3759 7.309377 CCAATCCATGTTCAGAGTTGTAATGTT 60.309 37.037 0.00 0.00 0.00 2.71
2569 3760 6.558771 TCCATGTTCAGAGTTGTAATGTTG 57.441 37.500 0.00 0.00 0.00 3.33
2570 3761 5.048782 TCCATGTTCAGAGTTGTAATGTTGC 60.049 40.000 0.00 0.00 0.00 4.17
2571 3762 5.278414 CCATGTTCAGAGTTGTAATGTTGCA 60.278 40.000 0.00 0.00 0.00 4.08
2572 3763 6.384224 CATGTTCAGAGTTGTAATGTTGCAT 58.616 36.000 0.00 0.00 0.00 3.96
2573 3764 5.761003 TGTTCAGAGTTGTAATGTTGCATG 58.239 37.500 0.00 0.00 0.00 4.06
2574 3765 5.299028 TGTTCAGAGTTGTAATGTTGCATGT 59.701 36.000 0.00 0.00 0.00 3.21
2575 3766 6.484977 TGTTCAGAGTTGTAATGTTGCATGTA 59.515 34.615 0.00 0.00 0.00 2.29
2576 3767 6.480524 TCAGAGTTGTAATGTTGCATGTAC 57.519 37.500 0.00 0.00 0.00 2.90
2577 3768 5.411361 TCAGAGTTGTAATGTTGCATGTACC 59.589 40.000 0.00 0.00 0.00 3.34
2578 3769 4.391830 AGAGTTGTAATGTTGCATGTACCG 59.608 41.667 0.00 0.00 0.00 4.02
2579 3770 4.069304 AGTTGTAATGTTGCATGTACCGT 58.931 39.130 0.00 0.00 0.00 4.83
2580 3771 4.083537 AGTTGTAATGTTGCATGTACCGTG 60.084 41.667 0.00 0.00 0.00 4.94
2581 3772 2.160615 TGTAATGTTGCATGTACCGTGC 59.839 45.455 12.07 12.07 45.53 5.34
2582 3773 0.525761 AATGTTGCATGTACCGTGCC 59.474 50.000 15.25 4.45 44.81 5.01
2583 3774 0.607762 ATGTTGCATGTACCGTGCCA 60.608 50.000 15.25 8.97 44.81 4.92
2584 3775 1.233950 TGTTGCATGTACCGTGCCAG 61.234 55.000 15.25 0.00 44.81 4.85
2585 3776 1.673993 TTGCATGTACCGTGCCAGG 60.674 57.895 15.25 0.00 44.81 4.45
2586 3777 2.404566 TTGCATGTACCGTGCCAGGT 62.405 55.000 15.25 5.51 44.81 4.00
2587 3778 2.106683 GCATGTACCGTGCCAGGTC 61.107 63.158 3.27 0.00 44.68 3.85
2588 3779 1.596934 CATGTACCGTGCCAGGTCT 59.403 57.895 3.27 0.00 44.68 3.85
2589 3780 0.460284 CATGTACCGTGCCAGGTCTC 60.460 60.000 3.27 0.69 44.68 3.36
2590 3781 0.614979 ATGTACCGTGCCAGGTCTCT 60.615 55.000 3.27 0.00 44.68 3.10
2591 3782 1.248785 TGTACCGTGCCAGGTCTCTC 61.249 60.000 3.27 0.00 44.68 3.20
2592 3783 0.966370 GTACCGTGCCAGGTCTCTCT 60.966 60.000 3.27 0.00 44.68 3.10
2593 3784 0.965866 TACCGTGCCAGGTCTCTCTG 60.966 60.000 3.27 0.00 44.68 3.35
2594 3785 2.125753 CGTGCCAGGTCTCTCTGC 60.126 66.667 0.00 0.00 33.64 4.26
2595 3786 2.644212 CGTGCCAGGTCTCTCTGCT 61.644 63.158 0.00 0.00 33.64 4.24
2596 3787 1.315981 CGTGCCAGGTCTCTCTGCTA 61.316 60.000 0.00 0.00 33.64 3.49
2597 3788 1.118838 GTGCCAGGTCTCTCTGCTAT 58.881 55.000 0.00 0.00 33.64 2.97
2598 3789 1.068434 GTGCCAGGTCTCTCTGCTATC 59.932 57.143 0.00 0.00 33.64 2.08
2599 3790 0.313672 GCCAGGTCTCTCTGCTATCG 59.686 60.000 0.00 0.00 33.64 2.92
2600 3791 1.974265 CCAGGTCTCTCTGCTATCGA 58.026 55.000 0.00 0.00 33.64 3.59
2601 3792 1.606668 CCAGGTCTCTCTGCTATCGAC 59.393 57.143 0.00 0.00 33.64 4.20
2602 3793 1.262950 CAGGTCTCTCTGCTATCGACG 59.737 57.143 0.00 0.00 0.00 5.12
2603 3794 0.040781 GGTCTCTCTGCTATCGACGC 60.041 60.000 1.78 1.78 0.00 5.19
2604 3795 0.040781 GTCTCTCTGCTATCGACGCC 60.041 60.000 6.12 0.00 0.00 5.68
2605 3796 0.463833 TCTCTCTGCTATCGACGCCA 60.464 55.000 6.12 0.00 0.00 5.69
2606 3797 0.317436 CTCTCTGCTATCGACGCCAC 60.317 60.000 6.12 0.00 0.00 5.01
2607 3798 1.299468 CTCTGCTATCGACGCCACC 60.299 63.158 6.12 0.00 0.00 4.61
2608 3799 2.004808 CTCTGCTATCGACGCCACCA 62.005 60.000 6.12 0.00 0.00 4.17
2609 3800 1.878522 CTGCTATCGACGCCACCAC 60.879 63.158 6.12 0.00 0.00 4.16
2610 3801 2.954868 GCTATCGACGCCACCACG 60.955 66.667 0.00 0.00 39.50 4.94
2611 3802 2.795973 CTATCGACGCCACCACGA 59.204 61.111 0.00 0.00 40.18 4.35
2612 3803 1.585521 CTATCGACGCCACCACGAC 60.586 63.158 0.00 0.00 38.79 4.34
2613 3804 2.261172 CTATCGACGCCACCACGACA 62.261 60.000 0.00 0.00 38.79 4.35
2614 3805 2.531927 TATCGACGCCACCACGACAC 62.532 60.000 0.00 0.00 38.79 3.67
2620 3811 3.918977 CCACCACGACACCCGACA 61.919 66.667 0.00 0.00 41.76 4.35
2621 3812 2.107343 CACCACGACACCCGACAA 59.893 61.111 0.00 0.00 41.76 3.18
2622 3813 2.107546 ACCACGACACCCGACAAC 59.892 61.111 0.00 0.00 41.76 3.32
2623 3814 3.033764 CCACGACACCCGACAACG 61.034 66.667 0.00 0.00 41.76 4.10
2624 3815 2.278989 CACGACACCCGACAACGT 60.279 61.111 0.00 0.00 41.76 3.99
2625 3816 2.026590 ACGACACCCGACAACGTC 59.973 61.111 0.00 0.00 41.76 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.929610 AGTACCTAGAGTAACACGACGAC 59.070 47.826 0.00 0.00 31.05 4.34
1 2 4.193826 AGTACCTAGAGTAACACGACGA 57.806 45.455 0.00 0.00 31.05 4.20
2 3 5.105752 AGTAGTACCTAGAGTAACACGACG 58.894 45.833 0.00 0.00 31.05 5.12
3 4 7.262048 ACTAGTAGTACCTAGAGTAACACGAC 58.738 42.308 11.73 0.00 38.24 4.34
4 5 7.411486 ACTAGTAGTACCTAGAGTAACACGA 57.589 40.000 11.73 0.00 38.24 4.35
5 6 8.410141 ACTACTAGTAGTACCTAGAGTAACACG 58.590 40.741 29.96 3.07 43.98 4.49
6 7 9.744468 GACTACTAGTAGTACCTAGAGTAACAC 57.256 40.741 30.80 12.72 45.63 3.32
63 64 1.201880 GGAACCTCGTCCAGTACTCAC 59.798 57.143 0.00 0.00 37.65 3.51
64 65 1.075050 AGGAACCTCGTCCAGTACTCA 59.925 52.381 0.00 0.00 40.48 3.41
65 66 1.744522 GAGGAACCTCGTCCAGTACTC 59.255 57.143 5.06 0.00 40.48 2.59
66 67 1.355043 AGAGGAACCTCGTCCAGTACT 59.645 52.381 14.13 0.00 46.90 2.73
67 68 1.473278 CAGAGGAACCTCGTCCAGTAC 59.527 57.143 14.13 0.00 46.90 2.73
68 69 1.353358 TCAGAGGAACCTCGTCCAGTA 59.647 52.381 14.13 0.00 46.90 2.74
69 70 0.112606 TCAGAGGAACCTCGTCCAGT 59.887 55.000 14.13 0.00 46.90 4.00
70 71 0.528470 GTCAGAGGAACCTCGTCCAG 59.472 60.000 14.13 5.05 46.90 3.86
71 72 1.241990 CGTCAGAGGAACCTCGTCCA 61.242 60.000 14.13 0.00 46.90 4.02
72 73 1.242665 ACGTCAGAGGAACCTCGTCC 61.243 60.000 14.13 6.07 46.90 4.79
73 74 1.130186 GTACGTCAGAGGAACCTCGTC 59.870 57.143 14.13 8.46 46.90 4.20
74 75 1.163554 GTACGTCAGAGGAACCTCGT 58.836 55.000 14.13 11.63 46.90 4.18
75 76 1.130749 CAGTACGTCAGAGGAACCTCG 59.869 57.143 14.13 9.88 46.90 4.63
76 77 1.135344 GCAGTACGTCAGAGGAACCTC 60.135 57.143 12.42 12.42 43.03 3.85
77 78 0.889306 GCAGTACGTCAGAGGAACCT 59.111 55.000 0.00 0.00 0.00 3.50
78 79 0.601558 TGCAGTACGTCAGAGGAACC 59.398 55.000 0.00 0.00 0.00 3.62
79 80 1.402984 CCTGCAGTACGTCAGAGGAAC 60.403 57.143 13.81 0.00 32.26 3.62
80 81 0.888619 CCTGCAGTACGTCAGAGGAA 59.111 55.000 13.81 0.00 32.26 3.36
81 82 0.965866 CCCTGCAGTACGTCAGAGGA 60.966 60.000 13.81 0.00 32.26 3.71
82 83 1.513158 CCCTGCAGTACGTCAGAGG 59.487 63.158 13.81 12.06 32.26 3.69
83 84 1.153745 GCCCTGCAGTACGTCAGAG 60.154 63.158 13.81 6.74 32.26 3.35
84 85 2.970639 GCCCTGCAGTACGTCAGA 59.029 61.111 13.81 0.00 32.26 3.27
85 86 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
86 87 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
101 102 3.357079 GTCAGTGGCCCAACTGCG 61.357 66.667 16.60 0.00 45.93 5.18
102 103 2.203337 TGTCAGTGGCCCAACTGC 60.203 61.111 16.60 12.53 45.93 4.40
104 105 2.078665 ACCTGTCAGTGGCCCAACT 61.079 57.895 0.00 0.00 0.00 3.16
105 106 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
106 107 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
112 113 4.351054 GGGGCCCACCTGTCAGTG 62.351 72.222 26.86 0.00 40.03 3.66
124 125 4.351054 CACTGACAGGTGGGGGCC 62.351 72.222 7.51 0.00 33.95 5.80
130 131 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
131 132 2.078665 AGTTGGGCCACTGACAGGT 61.079 57.895 5.23 0.00 0.00 4.00
132 133 1.601759 CAGTTGGGCCACTGACAGG 60.602 63.158 23.45 7.08 46.29 4.00
133 134 2.263741 GCAGTTGGGCCACTGACAG 61.264 63.158 28.71 15.14 46.29 3.51
134 135 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
135 136 3.357079 CGCAGTTGGGCCACTGAC 61.357 66.667 28.71 17.09 46.29 3.51
150 151 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
151 152 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
152 153 2.125512 CCTGACGTACTGCAGGGC 60.126 66.667 19.93 9.18 46.24 5.19
155 156 1.513158 CTCCCCTGACGTACTGCAG 59.487 63.158 13.48 13.48 0.00 4.41
156 157 2.646175 GCTCCCCTGACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
157 158 2.184579 GCTCCCCTGACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
158 159 2.893398 GGCTCCCCTGACGTACTG 59.107 66.667 0.00 0.00 0.00 2.74
159 160 2.754658 CGGCTCCCCTGACGTACT 60.755 66.667 0.00 0.00 33.11 2.73
160 161 2.753043 TCGGCTCCCCTGACGTAC 60.753 66.667 0.00 0.00 39.83 3.67
161 162 2.439701 CTCGGCTCCCCTGACGTA 60.440 66.667 0.00 0.00 39.83 3.57
162 163 4.680537 ACTCGGCTCCCCTGACGT 62.681 66.667 0.00 0.00 39.83 4.34
163 164 3.827898 GACTCGGCTCCCCTGACG 61.828 72.222 0.00 0.00 40.31 4.35
164 165 3.462678 GGACTCGGCTCCCCTGAC 61.463 72.222 0.00 0.00 0.00 3.51
169 170 3.827898 CTCACGGACTCGGCTCCC 61.828 72.222 0.00 0.00 41.39 4.30
170 171 1.748122 TACTCACGGACTCGGCTCC 60.748 63.158 0.00 0.00 41.39 4.70
171 172 1.025647 AGTACTCACGGACTCGGCTC 61.026 60.000 0.00 0.00 41.39 4.70
172 173 0.251354 TAGTACTCACGGACTCGGCT 59.749 55.000 0.00 0.00 41.39 5.52
173 174 0.376502 GTAGTACTCACGGACTCGGC 59.623 60.000 0.00 0.00 41.39 5.54
174 175 2.021355 AGTAGTACTCACGGACTCGG 57.979 55.000 0.00 0.00 41.39 4.63
175 176 2.863137 GGTAGTAGTACTCACGGACTCG 59.137 54.545 5.96 0.00 43.02 4.18
176 177 2.863137 CGGTAGTAGTACTCACGGACTC 59.137 54.545 5.96 0.00 30.95 3.36
177 178 2.497675 TCGGTAGTAGTACTCACGGACT 59.502 50.000 19.99 0.00 31.30 3.85
178 179 2.893637 TCGGTAGTAGTACTCACGGAC 58.106 52.381 19.99 8.58 31.30 4.79
179 180 3.055819 ACTTCGGTAGTAGTACTCACGGA 60.056 47.826 19.99 13.97 34.56 4.69
180 181 3.265791 ACTTCGGTAGTAGTACTCACGG 58.734 50.000 19.99 14.36 34.56 4.94
181 182 4.935885 AACTTCGGTAGTAGTACTCACG 57.064 45.455 5.96 12.51 35.54 4.35
182 183 5.319931 CGAAACTTCGGTAGTAGTACTCAC 58.680 45.833 5.96 4.01 46.30 3.51
183 184 5.536554 CGAAACTTCGGTAGTAGTACTCA 57.463 43.478 5.96 0.00 46.30 3.41
198 199 9.535878 CTTAAGATTAGGAGATTAGCGAAACTT 57.464 33.333 0.00 0.00 0.00 2.66
250 255 9.343539 GGCCAAGTTTGTAGAGAGAAAATATAT 57.656 33.333 0.00 0.00 0.00 0.86
251 256 8.325787 TGGCCAAGTTTGTAGAGAGAAAATATA 58.674 33.333 0.61 0.00 0.00 0.86
254 259 5.385198 TGGCCAAGTTTGTAGAGAGAAAAT 58.615 37.500 0.61 0.00 0.00 1.82
259 265 5.712152 ATTTTGGCCAAGTTTGTAGAGAG 57.288 39.130 19.48 0.00 0.00 3.20
291 297 8.354426 AGTACTGTATATTTTGGCAACGTTTTT 58.646 29.630 0.00 0.00 42.51 1.94
292 298 7.878036 AGTACTGTATATTTTGGCAACGTTTT 58.122 30.769 0.00 0.00 42.51 2.43
293 299 7.361457 GGAGTACTGTATATTTTGGCAACGTTT 60.361 37.037 0.00 0.00 42.51 3.60
294 300 6.093082 GGAGTACTGTATATTTTGGCAACGTT 59.907 38.462 0.00 0.00 42.51 3.99
295 301 5.583457 GGAGTACTGTATATTTTGGCAACGT 59.417 40.000 0.00 0.00 42.51 3.99
296 302 5.007332 GGGAGTACTGTATATTTTGGCAACG 59.993 44.000 0.00 0.00 42.51 4.10
298 304 6.321821 AGGGAGTACTGTATATTTTGGCAA 57.678 37.500 0.00 0.00 0.00 4.52
299 305 5.163237 GGAGGGAGTACTGTATATTTTGGCA 60.163 44.000 0.00 0.00 0.00 4.92
300 306 5.306394 GGAGGGAGTACTGTATATTTTGGC 58.694 45.833 0.00 0.00 0.00 4.52
301 307 5.303589 TCGGAGGGAGTACTGTATATTTTGG 59.696 44.000 0.00 0.00 0.00 3.28
302 308 6.401047 TCGGAGGGAGTACTGTATATTTTG 57.599 41.667 0.00 0.00 0.00 2.44
303 309 7.011382 AGATCGGAGGGAGTACTGTATATTTT 58.989 38.462 0.00 0.00 0.00 1.82
305 311 5.946972 CAGATCGGAGGGAGTACTGTATATT 59.053 44.000 0.00 0.00 0.00 1.28
306 312 5.251005 TCAGATCGGAGGGAGTACTGTATAT 59.749 44.000 0.00 0.00 0.00 0.86
310 316 1.564818 TCAGATCGGAGGGAGTACTGT 59.435 52.381 0.00 0.00 0.00 3.55
311 317 2.350057 TCAGATCGGAGGGAGTACTG 57.650 55.000 0.00 0.00 0.00 2.74
313 319 5.302313 ACTTATTTCAGATCGGAGGGAGTAC 59.698 44.000 0.00 0.00 0.00 2.73
315 321 4.100189 CACTTATTTCAGATCGGAGGGAGT 59.900 45.833 0.00 0.00 0.00 3.85
316 322 4.100189 ACACTTATTTCAGATCGGAGGGAG 59.900 45.833 0.00 0.00 0.00 4.30
318 324 4.372656 GACACTTATTTCAGATCGGAGGG 58.627 47.826 0.00 0.00 0.00 4.30
319 325 4.372656 GGACACTTATTTCAGATCGGAGG 58.627 47.826 0.00 0.00 0.00 4.30
321 327 4.030913 AGGGACACTTATTTCAGATCGGA 58.969 43.478 0.00 0.00 0.00 4.55
322 328 4.122776 CAGGGACACTTATTTCAGATCGG 58.877 47.826 0.00 0.00 0.00 4.18
323 329 4.759782 ACAGGGACACTTATTTCAGATCG 58.240 43.478 0.00 0.00 0.00 3.69
324 330 8.738645 ATAAACAGGGACACTTATTTCAGATC 57.261 34.615 0.00 0.00 0.00 2.75
326 332 8.160765 TGAATAAACAGGGACACTTATTTCAGA 58.839 33.333 0.00 0.00 0.00 3.27
327 333 8.335532 TGAATAAACAGGGACACTTATTTCAG 57.664 34.615 0.00 0.00 0.00 3.02
328 334 8.698973 TTGAATAAACAGGGACACTTATTTCA 57.301 30.769 0.00 0.00 0.00 2.69
329 335 9.974980 TTTTGAATAAACAGGGACACTTATTTC 57.025 29.630 0.00 0.00 0.00 2.17
330 336 9.758651 GTTTTGAATAAACAGGGACACTTATTT 57.241 29.630 0.00 0.00 0.00 1.40
331 337 9.143155 AGTTTTGAATAAACAGGGACACTTATT 57.857 29.630 0.00 0.00 32.81 1.40
332 338 8.576442 CAGTTTTGAATAAACAGGGACACTTAT 58.424 33.333 0.00 0.00 32.81 1.73
333 339 7.469456 GCAGTTTTGAATAAACAGGGACACTTA 60.469 37.037 0.00 0.00 32.81 2.24
334 340 6.682861 GCAGTTTTGAATAAACAGGGACACTT 60.683 38.462 0.00 0.00 32.81 3.16
335 341 5.221244 GCAGTTTTGAATAAACAGGGACACT 60.221 40.000 0.00 0.00 32.81 3.55
336 342 4.982295 GCAGTTTTGAATAAACAGGGACAC 59.018 41.667 0.00 0.00 32.81 3.67
337 343 4.261405 CGCAGTTTTGAATAAACAGGGACA 60.261 41.667 0.00 0.00 33.56 4.02
338 344 4.023536 TCGCAGTTTTGAATAAACAGGGAC 60.024 41.667 7.93 0.00 35.09 4.46
339 345 4.023536 GTCGCAGTTTTGAATAAACAGGGA 60.024 41.667 7.93 7.93 36.68 4.20
340 346 4.226761 GTCGCAGTTTTGAATAAACAGGG 58.773 43.478 0.00 0.00 33.21 4.45
341 347 4.675114 GTGTCGCAGTTTTGAATAAACAGG 59.325 41.667 0.00 0.00 32.81 4.00
342 348 4.675114 GGTGTCGCAGTTTTGAATAAACAG 59.325 41.667 0.00 0.00 32.81 3.16
343 349 4.336993 AGGTGTCGCAGTTTTGAATAAACA 59.663 37.500 0.00 0.00 32.81 2.83
344 350 4.855531 AGGTGTCGCAGTTTTGAATAAAC 58.144 39.130 0.00 0.00 0.00 2.01
345 351 6.811253 ATAGGTGTCGCAGTTTTGAATAAA 57.189 33.333 0.00 0.00 0.00 1.40
346 352 6.811253 AATAGGTGTCGCAGTTTTGAATAA 57.189 33.333 0.00 0.00 0.00 1.40
347 353 6.811253 AAATAGGTGTCGCAGTTTTGAATA 57.189 33.333 0.00 0.00 0.00 1.75
348 354 5.705609 AAATAGGTGTCGCAGTTTTGAAT 57.294 34.783 0.00 0.00 0.00 2.57
349 355 5.277825 CAAAATAGGTGTCGCAGTTTTGAA 58.722 37.500 11.53 0.00 38.26 2.69
350 356 4.261405 CCAAAATAGGTGTCGCAGTTTTGA 60.261 41.667 15.67 0.00 38.26 2.69
351 357 3.980775 CCAAAATAGGTGTCGCAGTTTTG 59.019 43.478 10.61 10.61 36.70 2.44
352 358 3.886505 TCCAAAATAGGTGTCGCAGTTTT 59.113 39.130 0.00 0.00 0.00 2.43
353 359 3.482436 TCCAAAATAGGTGTCGCAGTTT 58.518 40.909 0.00 0.00 0.00 2.66
354 360 3.134574 TCCAAAATAGGTGTCGCAGTT 57.865 42.857 0.00 0.00 0.00 3.16
355 361 2.851263 TCCAAAATAGGTGTCGCAGT 57.149 45.000 0.00 0.00 0.00 4.40
356 362 3.809832 CCTATCCAAAATAGGTGTCGCAG 59.190 47.826 3.39 0.00 37.08 5.18
357 363 3.452990 TCCTATCCAAAATAGGTGTCGCA 59.547 43.478 10.16 0.00 41.41 5.10
358 364 4.058817 CTCCTATCCAAAATAGGTGTCGC 58.941 47.826 10.16 0.00 41.41 5.19
359 365 4.503296 CCCTCCTATCCAAAATAGGTGTCG 60.503 50.000 10.16 0.00 41.41 4.35
360 366 4.658901 TCCCTCCTATCCAAAATAGGTGTC 59.341 45.833 10.16 0.00 41.41 3.67
361 367 4.641868 TCCCTCCTATCCAAAATAGGTGT 58.358 43.478 10.16 0.00 41.41 4.16
362 368 4.660771 ACTCCCTCCTATCCAAAATAGGTG 59.339 45.833 10.16 8.14 41.41 4.00
363 369 4.909284 ACTCCCTCCTATCCAAAATAGGT 58.091 43.478 10.16 0.00 41.41 3.08
364 370 6.085416 ACTACTCCCTCCTATCCAAAATAGG 58.915 44.000 4.96 4.96 41.90 2.57
365 371 7.619512 AACTACTCCCTCCTATCCAAAATAG 57.380 40.000 0.00 0.00 0.00 1.73
366 372 8.401955 AAAACTACTCCCTCCTATCCAAAATA 57.598 34.615 0.00 0.00 0.00 1.40
367 373 6.910259 AAACTACTCCCTCCTATCCAAAAT 57.090 37.500 0.00 0.00 0.00 1.82
368 374 6.713731 AAAACTACTCCCTCCTATCCAAAA 57.286 37.500 0.00 0.00 0.00 2.44
369 375 6.713731 AAAAACTACTCCCTCCTATCCAAA 57.286 37.500 0.00 0.00 0.00 3.28
427 464 3.515901 ACACAACCCTTCTAGCTTCTAGG 59.484 47.826 0.00 0.00 0.00 3.02
435 472 7.687941 ACATATGAAAACACAACCCTTCTAG 57.312 36.000 10.38 0.00 0.00 2.43
436 473 8.356657 CAAACATATGAAAACACAACCCTTCTA 58.643 33.333 10.38 0.00 0.00 2.10
495 544 4.590850 AACTTCATCCAAAAGTTCAGGC 57.409 40.909 0.00 0.00 41.86 4.85
497 546 7.975616 TGAAGAAAACTTCATCCAAAAGTTCAG 59.024 33.333 8.32 0.00 44.13 3.02
498 547 7.835822 TGAAGAAAACTTCATCCAAAAGTTCA 58.164 30.769 8.32 0.00 44.13 3.18
499 548 8.595533 GTTGAAGAAAACTTCATCCAAAAGTTC 58.404 33.333 12.34 0.00 44.13 3.01
500 549 7.549134 GGTTGAAGAAAACTTCATCCAAAAGTT 59.451 33.333 23.55 0.00 46.22 2.66
540 600 5.048083 CCACTAATTTCTGTGGCAAGCTTAA 60.048 40.000 0.00 0.00 45.68 1.85
561 628 9.801714 CGGTATATGTTTTCGATAATTAACCAC 57.198 33.333 0.00 0.00 0.00 4.16
564 631 9.737025 GCTCGGTATATGTTTTCGATAATTAAC 57.263 33.333 0.00 0.00 0.00 2.01
565 632 8.928733 GGCTCGGTATATGTTTTCGATAATTAA 58.071 33.333 0.00 0.00 0.00 1.40
566 633 7.274033 CGGCTCGGTATATGTTTTCGATAATTA 59.726 37.037 0.00 0.00 0.00 1.40
567 634 6.090358 CGGCTCGGTATATGTTTTCGATAATT 59.910 38.462 0.00 0.00 0.00 1.40
568 635 5.575606 CGGCTCGGTATATGTTTTCGATAAT 59.424 40.000 0.00 0.00 0.00 1.28
569 636 4.919168 CGGCTCGGTATATGTTTTCGATAA 59.081 41.667 0.00 0.00 0.00 1.75
570 637 4.478699 CGGCTCGGTATATGTTTTCGATA 58.521 43.478 0.00 0.00 0.00 2.92
571 638 3.314553 CGGCTCGGTATATGTTTTCGAT 58.685 45.455 0.00 0.00 0.00 3.59
572 639 2.734670 CGGCTCGGTATATGTTTTCGA 58.265 47.619 0.00 0.00 0.00 3.71
573 640 1.191647 GCGGCTCGGTATATGTTTTCG 59.808 52.381 0.00 0.00 0.00 3.46
574 641 2.475487 GAGCGGCTCGGTATATGTTTTC 59.525 50.000 15.09 0.00 37.83 2.29
575 642 2.159014 TGAGCGGCTCGGTATATGTTTT 60.159 45.455 23.72 0.00 37.83 2.43
576 643 1.411246 TGAGCGGCTCGGTATATGTTT 59.589 47.619 23.72 0.00 37.83 2.83
577 644 1.037493 TGAGCGGCTCGGTATATGTT 58.963 50.000 23.72 0.00 37.83 2.71
578 645 1.257743 ATGAGCGGCTCGGTATATGT 58.742 50.000 23.72 1.14 37.83 2.29
579 646 2.094494 AGAATGAGCGGCTCGGTATATG 60.094 50.000 23.72 0.00 37.83 1.78
580 647 2.164624 GAGAATGAGCGGCTCGGTATAT 59.835 50.000 23.72 9.49 37.83 0.86
581 648 1.540267 GAGAATGAGCGGCTCGGTATA 59.460 52.381 23.72 7.45 37.83 1.47
582 649 0.315568 GAGAATGAGCGGCTCGGTAT 59.684 55.000 23.72 12.01 37.83 2.73
583 650 0.752009 AGAGAATGAGCGGCTCGGTA 60.752 55.000 23.72 8.20 37.83 4.02
584 651 2.055042 AGAGAATGAGCGGCTCGGT 61.055 57.895 23.72 14.52 41.33 4.69
591 658 1.227497 GGGGAGCAGAGAATGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
598 665 0.975040 GAAGCAGAGGGGAGCAGAGA 60.975 60.000 0.00 0.00 0.00 3.10
607 682 0.906756 TCAGTGGGAGAAGCAGAGGG 60.907 60.000 0.00 0.00 0.00 4.30
639 714 1.989165 GCTAATATTCCTCTCTGCGCG 59.011 52.381 0.00 0.00 0.00 6.86
686 761 3.982576 TTCGGTTTCTTTGCTCCTTTC 57.017 42.857 0.00 0.00 0.00 2.62
843 929 3.369147 CGGAGAAAGAGTGCAATGTACTG 59.631 47.826 9.08 0.00 0.00 2.74
850 936 1.066143 GGGATCGGAGAAAGAGTGCAA 60.066 52.381 0.00 0.00 43.58 4.08
852 938 0.179070 GGGGATCGGAGAAAGAGTGC 60.179 60.000 0.00 0.00 43.58 4.40
868 954 3.905493 TTGTATAGAGAGGGAGAGGGG 57.095 52.381 0.00 0.00 0.00 4.79
943 1031 1.233950 TTCTGCCACCGACGTACGTA 61.234 55.000 22.87 2.36 40.78 3.57
944 1032 2.074230 TTTCTGCCACCGACGTACGT 62.074 55.000 23.04 23.04 40.78 3.57
945 1033 1.342082 CTTTCTGCCACCGACGTACG 61.342 60.000 15.01 15.01 42.18 3.67
946 1034 0.319297 ACTTTCTGCCACCGACGTAC 60.319 55.000 0.00 0.00 0.00 3.67
1091 1179 2.507324 GCCAGAAGACGAGGACGC 60.507 66.667 0.00 0.00 43.96 5.19
1363 1451 4.117661 GAGCCGCGTCTCGTTCCT 62.118 66.667 0.00 0.00 36.19 3.36
1506 1594 4.680237 CTGGACTTGACGCCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
1704 1792 7.783090 AGAATTAAGAGCATCACACAGTATG 57.217 36.000 0.00 0.00 39.68 2.39
1814 1906 5.183713 TCACTTGTATCAAAGCAATCCAAGG 59.816 40.000 0.00 0.00 33.81 3.61
1897 2565 2.073816 ACGCCAACAAGAAGATAACGG 58.926 47.619 0.00 0.00 0.00 4.44
1927 2595 4.323868 CACACGAGGTACGAGAAAGATTTC 59.676 45.833 0.00 0.00 45.77 2.17
1928 2596 4.235360 CACACGAGGTACGAGAAAGATTT 58.765 43.478 0.00 0.00 45.77 2.17
1942 2610 1.800586 CATCCTTGACAACACACGAGG 59.199 52.381 0.00 0.00 38.61 4.63
1982 2650 2.892374 AGCCAACAACTTGCAAAAGAC 58.108 42.857 0.00 0.00 0.00 3.01
1995 2663 6.899393 AGAAGAAAATTGACATAGCCAACA 57.101 33.333 0.00 0.00 0.00 3.33
2020 2688 5.238650 ACGACCCACACAAGAAAGAAATAAG 59.761 40.000 0.00 0.00 0.00 1.73
2120 2829 3.006323 AGGTGTTTGTGCTTGTTTTGTCA 59.994 39.130 0.00 0.00 0.00 3.58
2121 2830 3.367630 CAGGTGTTTGTGCTTGTTTTGTC 59.632 43.478 0.00 0.00 0.00 3.18
2123 2832 2.094099 GCAGGTGTTTGTGCTTGTTTTG 59.906 45.455 0.00 0.00 36.71 2.44
2124 2833 2.345876 GCAGGTGTTTGTGCTTGTTTT 58.654 42.857 0.00 0.00 36.71 2.43
2127 2836 1.312371 ACGCAGGTGTTTGTGCTTGT 61.312 50.000 0.00 0.00 37.55 3.16
2128 2837 0.179140 AACGCAGGTGTTTGTGCTTG 60.179 50.000 0.00 0.00 37.55 4.01
2130 2839 1.604604 ATAACGCAGGTGTTTGTGCT 58.395 45.000 3.31 0.00 37.55 4.40
2131 2840 2.050691 CAATAACGCAGGTGTTTGTGC 58.949 47.619 3.31 0.00 36.27 4.57
2132 2841 2.050691 GCAATAACGCAGGTGTTTGTG 58.949 47.619 3.31 4.20 33.32 3.33
2133 2842 1.953686 AGCAATAACGCAGGTGTTTGT 59.046 42.857 3.31 0.00 33.32 2.83
2134 2843 2.704725 AGCAATAACGCAGGTGTTTG 57.295 45.000 3.31 0.00 33.32 2.93
2135 2844 3.726291 AAAGCAATAACGCAGGTGTTT 57.274 38.095 3.31 0.00 33.32 2.83
2137 2846 2.884639 AGAAAAGCAATAACGCAGGTGT 59.115 40.909 0.00 0.00 0.00 4.16
2138 2847 3.559238 AGAAAAGCAATAACGCAGGTG 57.441 42.857 0.00 0.00 0.00 4.00
2139 2848 4.941263 TGATAGAAAAGCAATAACGCAGGT 59.059 37.500 0.00 0.00 0.00 4.00
2142 2851 4.201910 GCCTGATAGAAAAGCAATAACGCA 60.202 41.667 0.00 0.00 0.00 5.24
2143 2852 4.282873 GCCTGATAGAAAAGCAATAACGC 58.717 43.478 0.00 0.00 0.00 4.84
2144 2853 4.518217 CGCCTGATAGAAAAGCAATAACG 58.482 43.478 0.00 0.00 0.00 3.18
2145 2854 4.035675 AGCGCCTGATAGAAAAGCAATAAC 59.964 41.667 2.29 0.00 0.00 1.89
2148 2857 2.648059 AGCGCCTGATAGAAAAGCAAT 58.352 42.857 2.29 0.00 0.00 3.56
2150 2859 2.979814 TAGCGCCTGATAGAAAAGCA 57.020 45.000 2.29 0.00 0.00 3.91
2151 2860 3.658709 AGATAGCGCCTGATAGAAAAGC 58.341 45.455 2.29 0.00 0.00 3.51
2153 2862 3.809832 GCAAGATAGCGCCTGATAGAAAA 59.190 43.478 2.29 0.00 0.00 2.29
2154 2863 3.070159 AGCAAGATAGCGCCTGATAGAAA 59.930 43.478 2.29 0.00 40.15 2.52
2155 2864 2.630098 AGCAAGATAGCGCCTGATAGAA 59.370 45.455 2.29 0.00 40.15 2.10
2156 2865 2.230025 GAGCAAGATAGCGCCTGATAGA 59.770 50.000 2.29 0.00 40.15 1.98
2158 2867 1.963515 TGAGCAAGATAGCGCCTGATA 59.036 47.619 2.29 0.00 40.15 2.15
2161 2870 0.179089 AGTGAGCAAGATAGCGCCTG 60.179 55.000 2.29 0.00 40.15 4.85
2162 2871 0.103937 GAGTGAGCAAGATAGCGCCT 59.896 55.000 2.29 0.00 40.15 5.52
2164 2873 0.926846 GTGAGTGAGCAAGATAGCGC 59.073 55.000 0.00 0.00 40.15 5.92
2165 2874 1.195347 CGTGAGTGAGCAAGATAGCG 58.805 55.000 0.00 0.00 40.15 4.26
2166 2875 1.135139 TCCGTGAGTGAGCAAGATAGC 59.865 52.381 0.00 0.00 0.00 2.97
2167 2876 3.510388 TTCCGTGAGTGAGCAAGATAG 57.490 47.619 0.00 0.00 0.00 2.08
2168 2877 3.701542 AGATTCCGTGAGTGAGCAAGATA 59.298 43.478 0.00 0.00 0.00 1.98
2169 2878 2.499289 AGATTCCGTGAGTGAGCAAGAT 59.501 45.455 0.00 0.00 0.00 2.40
2170 2879 1.895798 AGATTCCGTGAGTGAGCAAGA 59.104 47.619 0.00 0.00 0.00 3.02
2171 2880 2.376808 AGATTCCGTGAGTGAGCAAG 57.623 50.000 0.00 0.00 0.00 4.01
2172 2881 2.688507 GAAGATTCCGTGAGTGAGCAA 58.311 47.619 0.00 0.00 0.00 3.91
2175 2884 1.202582 ACCGAAGATTCCGTGAGTGAG 59.797 52.381 0.00 0.00 0.00 3.51
2177 2886 1.336887 ACACCGAAGATTCCGTGAGTG 60.337 52.381 17.19 6.83 0.00 3.51
2178 2887 0.966920 ACACCGAAGATTCCGTGAGT 59.033 50.000 17.19 0.00 0.00 3.41
2179 2888 1.726791 CAACACCGAAGATTCCGTGAG 59.273 52.381 17.19 8.21 0.00 3.51
2180 2889 1.606994 CCAACACCGAAGATTCCGTGA 60.607 52.381 17.19 0.00 0.00 4.35
2181 2890 0.796312 CCAACACCGAAGATTCCGTG 59.204 55.000 11.03 11.03 0.00 4.94
2182 2891 0.682852 TCCAACACCGAAGATTCCGT 59.317 50.000 0.00 0.00 0.00 4.69
2183 2892 1.803334 TTCCAACACCGAAGATTCCG 58.197 50.000 0.00 0.00 0.00 4.30
2184 2893 5.890424 TTAATTCCAACACCGAAGATTCC 57.110 39.130 0.00 0.00 0.00 3.01
2186 2895 7.176690 ACATCTTTAATTCCAACACCGAAGATT 59.823 33.333 0.00 0.00 32.11 2.40
2187 2896 6.659242 ACATCTTTAATTCCAACACCGAAGAT 59.341 34.615 0.00 0.00 34.06 2.40
2189 2898 6.254281 ACATCTTTAATTCCAACACCGAAG 57.746 37.500 0.00 0.00 0.00 3.79
2192 2901 7.707774 AAAAACATCTTTAATTCCAACACCG 57.292 32.000 0.00 0.00 0.00 4.94
2221 2992 2.576615 CCGGGGATCATCCTCTTTTTC 58.423 52.381 0.85 0.00 33.85 2.29
2228 2999 2.527875 GAGGCCGGGGATCATCCT 60.528 66.667 2.18 0.00 36.57 3.24
2229 3000 2.527875 AGAGGCCGGGGATCATCC 60.528 66.667 2.18 0.00 35.23 3.51
2230 3001 2.746359 CAGAGGCCGGGGATCATC 59.254 66.667 2.18 0.00 0.00 2.92
2233 3004 3.543536 GATGCAGAGGCCGGGGATC 62.544 68.421 2.18 9.34 40.13 3.36
2236 3007 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2237 3008 3.035173 TTCAGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 40.13 5.73
2238 3009 1.817099 GTTCAGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 40.13 6.13
2240 3011 0.179062 ATCGTTCAGATGCAGAGGCC 60.179 55.000 0.00 0.00 38.36 5.19
2241 3012 3.376218 ATCGTTCAGATGCAGAGGC 57.624 52.632 0.00 0.00 38.36 4.70
2280 3051 8.325787 TGGCTTTATAAGGTCTTGTGAGAATAA 58.674 33.333 0.62 0.00 32.66 1.40
2281 3052 7.857456 TGGCTTTATAAGGTCTTGTGAGAATA 58.143 34.615 0.62 0.00 32.66 1.75
2282 3053 6.721318 TGGCTTTATAAGGTCTTGTGAGAAT 58.279 36.000 0.62 0.00 32.66 2.40
2283 3054 6.121776 TGGCTTTATAAGGTCTTGTGAGAA 57.878 37.500 0.62 0.00 32.66 2.87
2284 3055 5.755409 TGGCTTTATAAGGTCTTGTGAGA 57.245 39.130 0.62 0.00 0.00 3.27
2285 3056 6.206634 TGTTTGGCTTTATAAGGTCTTGTGAG 59.793 38.462 0.62 0.00 0.00 3.51
2286 3057 6.065374 TGTTTGGCTTTATAAGGTCTTGTGA 58.935 36.000 0.62 0.00 0.00 3.58
2287 3058 6.325919 TGTTTGGCTTTATAAGGTCTTGTG 57.674 37.500 0.62 0.00 0.00 3.33
2288 3059 6.322712 TGTTGTTTGGCTTTATAAGGTCTTGT 59.677 34.615 0.62 0.00 0.00 3.16
2289 3060 6.744112 TGTTGTTTGGCTTTATAAGGTCTTG 58.256 36.000 0.62 0.00 0.00 3.02
2290 3061 6.516693 GCTGTTGTTTGGCTTTATAAGGTCTT 60.517 38.462 0.62 0.00 0.00 3.01
2292 3063 5.161358 GCTGTTGTTTGGCTTTATAAGGTC 58.839 41.667 0.00 0.00 0.00 3.85
2293 3064 4.586841 TGCTGTTGTTTGGCTTTATAAGGT 59.413 37.500 0.00 0.00 0.00 3.50
2294 3065 5.132897 TGCTGTTGTTTGGCTTTATAAGG 57.867 39.130 0.00 0.00 0.00 2.69
2297 3068 5.534654 AGTCTTGCTGTTGTTTGGCTTTATA 59.465 36.000 0.00 0.00 0.00 0.98
2300 3071 2.497273 AGTCTTGCTGTTGTTTGGCTTT 59.503 40.909 0.00 0.00 0.00 3.51
2301 3072 2.102578 AGTCTTGCTGTTGTTTGGCTT 58.897 42.857 0.00 0.00 0.00 4.35
2302 3073 1.767759 AGTCTTGCTGTTGTTTGGCT 58.232 45.000 0.00 0.00 0.00 4.75
2304 3075 4.044426 GCTTTAGTCTTGCTGTTGTTTGG 58.956 43.478 0.00 0.00 0.00 3.28
2306 3077 3.699038 TGGCTTTAGTCTTGCTGTTGTTT 59.301 39.130 0.00 0.00 0.00 2.83
2307 3078 3.066760 GTGGCTTTAGTCTTGCTGTTGTT 59.933 43.478 0.00 0.00 0.00 2.83
2308 3079 2.618709 GTGGCTTTAGTCTTGCTGTTGT 59.381 45.455 0.00 0.00 0.00 3.32
2310 3081 2.230660 GGTGGCTTTAGTCTTGCTGTT 58.769 47.619 0.00 0.00 0.00 3.16
2311 3082 1.878102 CGGTGGCTTTAGTCTTGCTGT 60.878 52.381 0.00 0.00 0.00 4.40
2312 3083 0.798776 CGGTGGCTTTAGTCTTGCTG 59.201 55.000 0.00 0.00 0.00 4.41
2313 3084 0.396811 ACGGTGGCTTTAGTCTTGCT 59.603 50.000 0.00 0.00 0.00 3.91
2317 3088 3.072211 GCTTAAACGGTGGCTTTAGTCT 58.928 45.455 0.00 0.00 0.00 3.24
2318 3089 2.809696 TGCTTAAACGGTGGCTTTAGTC 59.190 45.455 0.00 0.00 0.00 2.59
2319 3090 2.853705 TGCTTAAACGGTGGCTTTAGT 58.146 42.857 0.00 0.00 0.00 2.24
2322 3093 1.751924 TGTTGCTTAAACGGTGGCTTT 59.248 42.857 0.00 0.00 42.10 3.51
2323 3094 1.394618 TGTTGCTTAAACGGTGGCTT 58.605 45.000 0.00 0.00 42.10 4.35
2324 3095 1.066454 GTTGTTGCTTAAACGGTGGCT 59.934 47.619 0.00 0.00 42.10 4.75
2325 3096 1.066454 AGTTGTTGCTTAAACGGTGGC 59.934 47.619 0.00 0.00 42.10 5.01
2326 3097 2.098443 ACAGTTGTTGCTTAAACGGTGG 59.902 45.455 0.00 0.00 42.10 4.61
2327 3098 3.414549 ACAGTTGTTGCTTAAACGGTG 57.585 42.857 0.00 0.00 42.10 4.94
2342 3401 4.634012 TTGGATAGGTGTAGCAACAGTT 57.366 40.909 0.00 0.00 35.91 3.16
2343 3402 4.844349 ATTGGATAGGTGTAGCAACAGT 57.156 40.909 0.00 0.00 35.91 3.55
2344 3403 5.185454 TCAATTGGATAGGTGTAGCAACAG 58.815 41.667 5.42 0.00 35.91 3.16
2345 3404 5.172687 TCAATTGGATAGGTGTAGCAACA 57.827 39.130 5.42 0.00 0.00 3.33
2346 3405 5.822519 TCATCAATTGGATAGGTGTAGCAAC 59.177 40.000 5.42 0.00 33.95 4.17
2347 3406 6.000246 TCATCAATTGGATAGGTGTAGCAA 58.000 37.500 5.42 0.00 33.95 3.91
2349 3408 5.471456 CCTTCATCAATTGGATAGGTGTAGC 59.529 44.000 5.42 0.00 33.95 3.58
2351 3410 5.163099 CCCCTTCATCAATTGGATAGGTGTA 60.163 44.000 5.42 0.00 32.05 2.90
2352 3411 4.386761 CCCCTTCATCAATTGGATAGGTGT 60.387 45.833 5.42 0.00 32.05 4.16
2353 3412 4.147321 CCCCTTCATCAATTGGATAGGTG 58.853 47.826 5.42 0.00 32.05 4.00
2354 3413 3.437052 GCCCCTTCATCAATTGGATAGGT 60.437 47.826 5.42 0.00 32.05 3.08
2355 3414 3.160269 GCCCCTTCATCAATTGGATAGG 58.840 50.000 5.42 7.57 33.95 2.57
2359 3418 1.037030 GCGCCCCTTCATCAATTGGA 61.037 55.000 5.42 0.00 0.00 3.53
2360 3419 1.321805 TGCGCCCCTTCATCAATTGG 61.322 55.000 4.18 0.00 0.00 3.16
2361 3420 0.101759 CTGCGCCCCTTCATCAATTG 59.898 55.000 4.18 0.00 0.00 2.32
2362 3421 0.034186 TCTGCGCCCCTTCATCAATT 60.034 50.000 4.18 0.00 0.00 2.32
2363 3422 0.184451 ATCTGCGCCCCTTCATCAAT 59.816 50.000 4.18 0.00 0.00 2.57
2365 3424 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
2367 3426 0.394565 GACTATCTGCGCCCCTTCAT 59.605 55.000 4.18 0.00 0.00 2.57
2368 3427 0.687757 AGACTATCTGCGCCCCTTCA 60.688 55.000 4.18 0.00 0.00 3.02
2371 3430 2.136878 CCAGACTATCTGCGCCCCT 61.137 63.158 4.18 0.00 42.98 4.79
2372 3431 2.423446 CCAGACTATCTGCGCCCC 59.577 66.667 4.18 0.00 42.98 5.80
2375 3434 1.319541 TAGACCCAGACTATCTGCGC 58.680 55.000 0.00 0.00 42.98 6.09
2376 3435 5.009710 TGTTATTAGACCCAGACTATCTGCG 59.990 44.000 0.02 0.00 42.98 5.18
2379 3438 8.375493 TGTTTGTTATTAGACCCAGACTATCT 57.625 34.615 0.00 0.00 0.00 1.98
2380 3439 8.475639 TCTGTTTGTTATTAGACCCAGACTATC 58.524 37.037 0.00 0.00 0.00 2.08
2381 3440 8.258708 GTCTGTTTGTTATTAGACCCAGACTAT 58.741 37.037 0.00 0.00 42.51 2.12
2383 3442 6.042781 TGTCTGTTTGTTATTAGACCCAGACT 59.957 38.462 15.06 0.00 44.78 3.24
2384 3443 6.228258 TGTCTGTTTGTTATTAGACCCAGAC 58.772 40.000 0.00 0.00 44.76 3.51
2385 3444 6.428083 TGTCTGTTTGTTATTAGACCCAGA 57.572 37.500 0.00 0.00 38.96 3.86
2390 3449 6.403333 TGCGATGTCTGTTTGTTATTAGAC 57.597 37.500 0.00 0.00 39.88 2.59
2391 3450 5.063438 GCTGCGATGTCTGTTTGTTATTAGA 59.937 40.000 0.00 0.00 0.00 2.10
2392 3451 5.258622 GCTGCGATGTCTGTTTGTTATTAG 58.741 41.667 0.00 0.00 0.00 1.73
2394 3453 3.119849 GGCTGCGATGTCTGTTTGTTATT 60.120 43.478 0.00 0.00 0.00 1.40
2395 3454 2.420022 GGCTGCGATGTCTGTTTGTTAT 59.580 45.455 0.00 0.00 0.00 1.89
2396 3455 1.804151 GGCTGCGATGTCTGTTTGTTA 59.196 47.619 0.00 0.00 0.00 2.41
2397 3456 0.593128 GGCTGCGATGTCTGTTTGTT 59.407 50.000 0.00 0.00 0.00 2.83
2398 3457 0.534877 TGGCTGCGATGTCTGTTTGT 60.535 50.000 0.00 0.00 0.00 2.83
2399 3458 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
2400 3459 1.001378 GTTTGGCTGCGATGTCTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
2402 3461 1.237285 GGTTTGGCTGCGATGTCTGT 61.237 55.000 0.00 0.00 0.00 3.41
2403 3462 0.957395 AGGTTTGGCTGCGATGTCTG 60.957 55.000 0.00 0.00 0.00 3.51
2404 3463 0.613260 TAGGTTTGGCTGCGATGTCT 59.387 50.000 0.00 0.00 0.00 3.41
2405 3464 1.448985 TTAGGTTTGGCTGCGATGTC 58.551 50.000 0.00 0.00 0.00 3.06
2406 3465 1.539827 GTTTAGGTTTGGCTGCGATGT 59.460 47.619 0.00 0.00 0.00 3.06
2407 3466 1.539388 TGTTTAGGTTTGGCTGCGATG 59.461 47.619 0.00 0.00 0.00 3.84
2409 3468 1.810151 GATGTTTAGGTTTGGCTGCGA 59.190 47.619 0.00 0.00 0.00 5.10
2410 3469 1.812571 AGATGTTTAGGTTTGGCTGCG 59.187 47.619 0.00 0.00 0.00 5.18
2411 3470 4.700213 TCTTAGATGTTTAGGTTTGGCTGC 59.300 41.667 0.00 0.00 0.00 5.25
2413 3472 5.876357 TGTCTTAGATGTTTAGGTTTGGCT 58.124 37.500 0.00 0.00 0.00 4.75
2414 3473 6.374333 TCATGTCTTAGATGTTTAGGTTTGGC 59.626 38.462 0.00 0.00 0.00 4.52
2418 3477 7.259088 ACCTCATGTCTTAGATGTTTAGGTT 57.741 36.000 0.00 0.00 29.47 3.50
2419 3478 6.127026 GGACCTCATGTCTTAGATGTTTAGGT 60.127 42.308 0.00 0.00 43.89 3.08
2422 3481 5.724370 TGGGACCTCATGTCTTAGATGTTTA 59.276 40.000 0.00 0.00 43.89 2.01
2423 3482 4.536090 TGGGACCTCATGTCTTAGATGTTT 59.464 41.667 0.00 0.00 43.89 2.83
2424 3483 4.104086 TGGGACCTCATGTCTTAGATGTT 58.896 43.478 0.00 0.00 43.89 2.71
2425 3484 3.724478 TGGGACCTCATGTCTTAGATGT 58.276 45.455 0.00 0.00 43.89 3.06
2426 3485 4.446371 GTTGGGACCTCATGTCTTAGATG 58.554 47.826 0.00 0.00 43.89 2.90
2427 3486 3.456277 GGTTGGGACCTCATGTCTTAGAT 59.544 47.826 0.00 0.00 43.89 1.98
2428 3487 2.838202 GGTTGGGACCTCATGTCTTAGA 59.162 50.000 0.00 0.00 43.89 2.10
2429 3488 2.571653 TGGTTGGGACCTCATGTCTTAG 59.428 50.000 0.00 0.00 46.66 2.18
2430 3489 2.571653 CTGGTTGGGACCTCATGTCTTA 59.428 50.000 0.00 0.00 46.66 2.10
2431 3490 1.352352 CTGGTTGGGACCTCATGTCTT 59.648 52.381 0.00 0.00 46.66 3.01
2451 3510 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
2463 3522 0.986550 ACTGGTAGGTGCCCCATACC 60.987 60.000 7.24 7.24 36.14 2.73
2464 3523 0.468648 GACTGGTAGGTGCCCCATAC 59.531 60.000 0.00 0.00 0.00 2.39
2466 3525 2.001269 GGACTGGTAGGTGCCCCAT 61.001 63.158 0.00 0.00 0.00 4.00
2467 3526 2.609610 GGACTGGTAGGTGCCCCA 60.610 66.667 0.00 0.00 0.00 4.96
2468 3527 3.782443 CGGACTGGTAGGTGCCCC 61.782 72.222 0.00 0.00 0.00 5.80
2469 3528 3.782443 CCGGACTGGTAGGTGCCC 61.782 72.222 0.00 0.00 0.00 5.36
2470 3529 4.468689 GCCGGACTGGTAGGTGCC 62.469 72.222 5.05 0.00 41.21 5.01
2475 3534 3.701604 GAGTGCGCCGGACTGGTAG 62.702 68.421 18.13 0.00 41.21 3.18
2476 3535 3.755628 GAGTGCGCCGGACTGGTA 61.756 66.667 18.13 0.00 41.21 3.25
2479 3538 4.803426 GAGGAGTGCGCCGGACTG 62.803 72.222 18.13 0.00 0.00 3.51
2481 3540 4.373116 TTGAGGAGTGCGCCGGAC 62.373 66.667 5.05 0.00 0.00 4.79
2482 3541 4.373116 GTTGAGGAGTGCGCCGGA 62.373 66.667 5.05 0.00 0.00 5.14
2503 3694 3.792053 CTCATACCCGGCAGGCGTC 62.792 68.421 16.17 0.00 40.58 5.19
2504 3695 3.849951 CTCATACCCGGCAGGCGT 61.850 66.667 16.17 0.00 40.58 5.68
2505 3696 4.609018 CCTCATACCCGGCAGGCG 62.609 72.222 9.96 9.96 40.58 5.52
2532 3723 4.738998 TGGATTGGCGGCAGGTGG 62.739 66.667 12.87 0.00 0.00 4.61
2533 3724 2.440796 ATGGATTGGCGGCAGGTG 60.441 61.111 12.87 0.00 0.00 4.00
2535 3726 2.008268 GAACATGGATTGGCGGCAGG 62.008 60.000 12.87 1.68 0.00 4.85
2536 3727 1.314534 TGAACATGGATTGGCGGCAG 61.315 55.000 12.87 1.35 0.00 4.85
2537 3728 1.303970 TGAACATGGATTGGCGGCA 60.304 52.632 7.97 7.97 0.00 5.69
2538 3729 1.031571 TCTGAACATGGATTGGCGGC 61.032 55.000 0.00 0.00 0.00 6.53
2539 3730 1.019673 CTCTGAACATGGATTGGCGG 58.980 55.000 0.00 0.00 0.00 6.13
2540 3731 1.742761 ACTCTGAACATGGATTGGCG 58.257 50.000 0.00 0.00 0.00 5.69
2542 3733 6.151648 ACATTACAACTCTGAACATGGATTGG 59.848 38.462 0.00 0.00 0.00 3.16
2543 3734 7.149569 ACATTACAACTCTGAACATGGATTG 57.850 36.000 0.00 0.00 0.00 2.67
2544 3735 7.596494 CAACATTACAACTCTGAACATGGATT 58.404 34.615 0.00 0.00 0.00 3.01
2545 3736 6.349611 GCAACATTACAACTCTGAACATGGAT 60.350 38.462 0.00 0.00 0.00 3.41
2546 3737 5.048782 GCAACATTACAACTCTGAACATGGA 60.049 40.000 0.00 0.00 0.00 3.41
2547 3738 5.156355 GCAACATTACAACTCTGAACATGG 58.844 41.667 0.00 0.00 0.00 3.66
2548 3739 5.761003 TGCAACATTACAACTCTGAACATG 58.239 37.500 0.00 0.00 0.00 3.21
2549 3740 6.016024 ACATGCAACATTACAACTCTGAACAT 60.016 34.615 0.00 0.00 0.00 2.71
2550 3741 5.299028 ACATGCAACATTACAACTCTGAACA 59.701 36.000 0.00 0.00 0.00 3.18
2551 3742 5.762045 ACATGCAACATTACAACTCTGAAC 58.238 37.500 0.00 0.00 0.00 3.18
2552 3743 6.072728 GGTACATGCAACATTACAACTCTGAA 60.073 38.462 0.00 0.00 0.00 3.02
2553 3744 5.411361 GGTACATGCAACATTACAACTCTGA 59.589 40.000 0.00 0.00 0.00 3.27
2554 3745 5.631026 GGTACATGCAACATTACAACTCTG 58.369 41.667 0.00 0.00 0.00 3.35
2555 3746 4.391830 CGGTACATGCAACATTACAACTCT 59.608 41.667 0.00 0.00 0.00 3.24
2556 3747 4.153475 ACGGTACATGCAACATTACAACTC 59.847 41.667 0.00 0.00 0.00 3.01
2557 3748 4.069304 ACGGTACATGCAACATTACAACT 58.931 39.130 0.00 0.00 0.00 3.16
2558 3749 4.155449 CACGGTACATGCAACATTACAAC 58.845 43.478 0.00 0.00 0.00 3.32
2559 3750 4.411993 CACGGTACATGCAACATTACAA 57.588 40.909 0.00 0.00 0.00 2.41
2570 3761 0.460284 GAGACCTGGCACGGTACATG 60.460 60.000 8.34 0.00 35.59 3.21
2571 3762 0.614979 AGAGACCTGGCACGGTACAT 60.615 55.000 8.34 0.00 35.59 2.29
2572 3763 1.228769 AGAGACCTGGCACGGTACA 60.229 57.895 8.34 0.00 35.59 2.90
2573 3764 0.966370 AGAGAGACCTGGCACGGTAC 60.966 60.000 8.34 6.64 35.59 3.34
2574 3765 0.965866 CAGAGAGACCTGGCACGGTA 60.966 60.000 8.34 0.00 35.59 4.02
2575 3766 2.118513 AGAGAGACCTGGCACGGT 59.881 61.111 8.14 8.14 37.88 4.83
2576 3767 2.575993 CAGAGAGACCTGGCACGG 59.424 66.667 0.00 2.01 0.00 4.94
2577 3768 1.315981 TAGCAGAGAGACCTGGCACG 61.316 60.000 0.00 0.00 34.82 5.34
2578 3769 1.068434 GATAGCAGAGAGACCTGGCAC 59.932 57.143 0.00 0.00 34.82 5.01
2579 3770 1.407936 GATAGCAGAGAGACCTGGCA 58.592 55.000 0.00 0.00 34.82 4.92
2580 3771 0.313672 CGATAGCAGAGAGACCTGGC 59.686 60.000 0.00 0.00 34.82 4.85
2581 3772 1.606668 GTCGATAGCAGAGAGACCTGG 59.393 57.143 0.00 0.00 34.82 4.45
2582 3773 1.262950 CGTCGATAGCAGAGAGACCTG 59.737 57.143 0.00 0.00 37.23 4.00
2583 3774 1.588674 CGTCGATAGCAGAGAGACCT 58.411 55.000 0.00 0.00 0.00 3.85
2584 3775 0.040781 GCGTCGATAGCAGAGAGACC 60.041 60.000 10.39 0.00 34.19 3.85
2585 3776 0.040781 GGCGTCGATAGCAGAGAGAC 60.041 60.000 15.89 0.00 36.08 3.36
2586 3777 0.463833 TGGCGTCGATAGCAGAGAGA 60.464 55.000 15.89 0.00 36.08 3.10
2587 3778 0.317436 GTGGCGTCGATAGCAGAGAG 60.317 60.000 15.89 0.00 36.08 3.20
2588 3779 1.725557 GGTGGCGTCGATAGCAGAGA 61.726 60.000 15.89 0.00 36.08 3.10
2589 3780 1.299468 GGTGGCGTCGATAGCAGAG 60.299 63.158 15.89 0.00 36.08 3.35
2590 3781 2.049767 TGGTGGCGTCGATAGCAGA 61.050 57.895 15.89 1.48 36.08 4.26
2591 3782 1.878522 GTGGTGGCGTCGATAGCAG 60.879 63.158 15.89 0.00 36.08 4.24
2592 3783 2.183300 GTGGTGGCGTCGATAGCA 59.817 61.111 15.89 0.00 36.08 3.49
2593 3784 2.954868 CGTGGTGGCGTCGATAGC 60.955 66.667 7.23 7.23 0.00 2.97
2594 3785 1.585521 GTCGTGGTGGCGTCGATAG 60.586 63.158 0.00 0.00 36.08 2.08
2595 3786 2.334181 TGTCGTGGTGGCGTCGATA 61.334 57.895 0.00 0.00 36.08 2.92
2596 3787 3.676605 TGTCGTGGTGGCGTCGAT 61.677 61.111 0.00 0.00 36.08 3.59
2597 3788 4.634133 GTGTCGTGGTGGCGTCGA 62.634 66.667 0.00 0.00 0.00 4.20
2603 3794 3.448533 TTGTCGGGTGTCGTGGTGG 62.449 63.158 0.00 0.00 40.32 4.61
2604 3795 2.107343 TTGTCGGGTGTCGTGGTG 59.893 61.111 0.00 0.00 40.32 4.17
2605 3796 2.107546 GTTGTCGGGTGTCGTGGT 59.892 61.111 0.00 0.00 40.32 4.16
2606 3797 3.033764 CGTTGTCGGGTGTCGTGG 61.034 66.667 0.00 0.00 40.32 4.94
2607 3798 2.278989 ACGTTGTCGGGTGTCGTG 60.279 61.111 0.00 0.00 41.85 4.35
2608 3799 2.026590 GACGTTGTCGGGTGTCGT 59.973 61.111 0.00 0.00 41.85 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.