Multiple sequence alignment - TraesCS1B01G220700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G220700 chr1B 100.000 7063 0 0 1 7063 397791023 397798085 0.000000e+00 13044.0
1 TraesCS1B01G220700 chr1B 94.720 322 15 1 6744 7063 429217064 429217385 3.800000e-137 499.0
2 TraesCS1B01G220700 chr1B 88.384 198 20 2 3436 3633 397794235 397794429 1.180000e-57 235.0
3 TraesCS1B01G220700 chr1B 88.384 198 20 2 3213 3407 397794458 397794655 1.180000e-57 235.0
4 TraesCS1B01G220700 chr1A 95.174 4414 151 22 899 5276 369049001 369053388 0.000000e+00 6914.0
5 TraesCS1B01G220700 chr1A 91.232 479 35 3 5983 6459 369053929 369054402 0.000000e+00 645.0
6 TraesCS1B01G220700 chr1A 83.385 644 54 26 3 632 369047959 369048563 1.340000e-151 547.0
7 TraesCS1B01G220700 chr1A 80.600 500 68 18 5418 5890 369053390 369053887 6.740000e-95 359.0
8 TraesCS1B01G220700 chr1A 88.000 200 21 3 3213 3409 369051543 369051742 4.260000e-57 233.0
9 TraesCS1B01G220700 chr1A 96.591 88 2 1 784 871 369048650 369048736 2.050000e-30 145.0
10 TraesCS1B01G220700 chr1A 100.000 30 0 0 804 833 369048625 369048654 1.000000e-03 56.5
11 TraesCS1B01G220700 chr1D 95.035 3726 134 21 1585 5277 296273887 296277594 0.000000e+00 5808.0
12 TraesCS1B01G220700 chr1D 91.265 1534 77 30 1 1498 296272328 296273840 0.000000e+00 2037.0
13 TraesCS1B01G220700 chr1D 94.375 320 18 0 6744 7063 477486918 477487237 6.370000e-135 492.0
14 TraesCS1B01G220700 chr1D 89.258 391 24 10 5983 6365 296278143 296278523 2.310000e-129 473.0
15 TraesCS1B01G220700 chr1D 90.909 286 22 3 6454 6738 296280814 296281096 1.440000e-101 381.0
16 TraesCS1B01G220700 chr1D 85.460 337 38 9 5563 5890 296277767 296278101 2.440000e-89 340.0
17 TraesCS1B01G220700 chr1D 89.000 200 19 2 3213 3409 296275750 296275949 1.970000e-60 244.0
18 TraesCS1B01G220700 chr1D 84.804 204 22 7 3436 3633 296275521 296275721 5.590000e-46 196.0
19 TraesCS1B01G220700 chr1D 89.809 157 11 3 5272 5426 313569905 313570058 5.590000e-46 196.0
20 TraesCS1B01G220700 chr6D 95.016 321 16 0 6743 7063 328579898 328580218 8.180000e-139 505.0
21 TraesCS1B01G220700 chr6D 93.769 321 19 1 6743 7063 336220496 336220815 1.380000e-131 481.0
22 TraesCS1B01G220700 chr6D 82.857 350 47 10 5483 5822 77394876 77394530 1.150000e-77 302.0
23 TraesCS1B01G220700 chr5B 95.000 320 16 0 6744 7063 341547771 341548090 2.940000e-138 503.0
24 TraesCS1B01G220700 chr5B 82.184 348 47 10 5483 5819 692099477 692099820 1.160000e-72 285.0
25 TraesCS1B01G220700 chr5B 87.302 63 8 0 3096 3158 698067758 698067820 9.830000e-09 73.1
26 TraesCS1B01G220700 chr2D 95.000 320 16 0 6744 7063 207476866 207477185 2.940000e-138 503.0
27 TraesCS1B01G220700 chr2D 93.750 320 20 0 6744 7063 524462611 524462930 1.380000e-131 481.0
28 TraesCS1B01G220700 chr2D 94.326 141 6 1 5275 5413 595164807 595164667 1.540000e-51 215.0
29 TraesCS1B01G220700 chr2D 89.172 157 13 3 5271 5424 80424572 80424417 7.230000e-45 193.0
30 TraesCS1B01G220700 chr6B 94.753 324 14 2 6743 7063 548634110 548634433 1.060000e-137 501.0
31 TraesCS1B01G220700 chr6B 91.608 143 10 1 5279 5419 136934967 136934825 5.590000e-46 196.0
32 TraesCS1B01G220700 chr7D 94.081 321 18 1 6743 7063 603145217 603144898 2.960000e-133 486.0
33 TraesCS1B01G220700 chr7D 83.143 350 47 9 5483 5822 237555132 237554785 6.880000e-80 309.0
34 TraesCS1B01G220700 chr7D 83.333 66 8 3 1631 1694 334860517 334860453 2.750000e-04 58.4
35 TraesCS1B01G220700 chr5A 85.014 347 39 11 5483 5819 689259357 689259700 2.440000e-89 340.0
36 TraesCS1B01G220700 chr5A 93.151 146 8 1 5272 5415 676322068 676322213 5.550000e-51 213.0
37 TraesCS1B01G220700 chr5A 82.524 103 16 2 3532 3633 367594130 367594231 9.760000e-14 89.8
38 TraesCS1B01G220700 chrUn 82.436 353 48 11 5483 5824 88746813 88747162 5.360000e-76 296.0
39 TraesCS1B01G220700 chr4B 82.051 351 49 9 5483 5822 299463085 299462738 3.220000e-73 287.0
40 TraesCS1B01G220700 chr4B 93.151 146 6 3 5273 5415 494694801 494694657 2.000000e-50 211.0
41 TraesCS1B01G220700 chr7B 82.267 344 45 10 5491 5822 120491323 120490984 4.170000e-72 283.0
42 TraesCS1B01G220700 chr6A 93.243 148 8 1 5272 5417 11882898 11882751 4.290000e-52 217.0
43 TraesCS1B01G220700 chr2A 93.103 145 8 1 5273 5415 345885570 345885426 2.000000e-50 211.0
44 TraesCS1B01G220700 chr4D 90.972 144 11 1 5278 5419 305139715 305139572 7.230000e-45 193.0
45 TraesCS1B01G220700 chr7A 89.130 46 4 1 1649 1694 379925976 379925932 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G220700 chr1B 397791023 397798085 7062 False 4504.666667 13044 92.256000 1 7063 3 chr1B.!!$F2 7062
1 TraesCS1B01G220700 chr1A 369047959 369054402 6443 False 1271.357143 6914 90.711714 3 6459 7 chr1A.!!$F1 6456
2 TraesCS1B01G220700 chr1D 296272328 296281096 8768 False 1354.142857 5808 89.390143 1 6738 7 chr1D.!!$F3 6737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 1206 1.065126 GGGTTCCACCTCATCCTCTTG 60.065 57.143 0.00 0.00 38.64 3.02 F
2083 2423 0.041238 TCAGGGGGACACTCACTAGG 59.959 60.000 0.00 0.00 0.00 3.02 F
2178 2518 2.274542 TGAGTTTTCATGCCCTCCCTA 58.725 47.619 0.00 0.00 0.00 3.53 F
2739 3079 3.243468 GGAGTACCGTTGAGGAGCTAATC 60.243 52.174 0.00 0.00 45.00 1.75 F
3699 4058 2.349627 CCGTTTTGGCATGCAAATGTTG 60.350 45.455 21.36 5.04 0.00 3.33 F
5294 5658 0.108756 GTGCCTGTTCGGTACCTCTC 60.109 60.000 10.90 0.30 42.02 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2454 2.967887 AGGCAGGAAGCTTTCAAATTGT 59.032 40.909 7.68 0.00 44.79 2.71 R
3065 3415 0.249155 GCATGATGGTTCAATGCCCG 60.249 55.000 0.00 0.00 34.96 6.13 R
3148 3498 0.599558 TGCTGCAGAATCAAACAGGC 59.400 50.000 20.43 0.00 0.00 4.85 R
3852 4211 2.417924 CCATGTCAGTACAGAGCCTGTC 60.418 54.545 10.60 4.57 41.21 3.51 R
5394 5758 0.322546 AAAGCCCTGTTCGGATCCAC 60.323 55.000 13.41 3.70 33.16 4.02 R
6963 9596 0.036105 TTGATGAGGCGCTGACATGT 60.036 50.000 7.64 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 5.113383 ACTCGCGGACATTTGTTATGAATA 58.887 37.500 6.13 0.00 0.00 1.75
174 180 7.993821 TTTTGAATTGCGAACATGTTTTAGA 57.006 28.000 13.36 0.46 0.00 2.10
178 185 8.586570 TGAATTGCGAACATGTTTTAGAAATT 57.413 26.923 19.67 19.67 0.00 1.82
179 186 9.039870 TGAATTGCGAACATGTTTTAGAAATTT 57.960 25.926 20.16 0.00 0.00 1.82
181 188 7.763172 TTGCGAACATGTTTTAGAAATTTGT 57.237 28.000 13.36 0.00 0.00 2.83
263 270 8.985805 ACTTTTTCTGAATTGATGAGCATTTTC 58.014 29.630 0.00 0.00 0.00 2.29
278 285 6.095860 TGAGCATTTTCCGAAATTCATGATCT 59.904 34.615 17.09 4.79 33.25 2.75
279 286 6.270815 AGCATTTTCCGAAATTCATGATCTG 58.729 36.000 0.00 0.00 33.25 2.90
280 287 6.095860 AGCATTTTCCGAAATTCATGATCTGA 59.904 34.615 0.00 0.00 33.25 3.27
282 289 7.253883 GCATTTTCCGAAATTCATGATCTGAAC 60.254 37.037 0.00 0.00 46.37 3.18
283 290 6.816134 TTTCCGAAATTCATGATCTGAACA 57.184 33.333 0.00 0.00 46.37 3.18
462 483 3.270027 GCCATATGCATATGCTCCGTTA 58.730 45.455 32.60 7.43 42.66 3.18
531 553 3.786809 GGCCTAAACTGCCGTTTTC 57.213 52.632 11.64 2.41 42.91 2.29
550 572 7.176075 CGTTTTCTACATCACTTTAGCATCAG 58.824 38.462 0.00 0.00 0.00 2.90
744 798 6.166982 AGCTAAGAAATATGAATAGACCCGC 58.833 40.000 0.00 0.00 0.00 6.13
749 803 7.639113 AGAAATATGAATAGACCCGCAAAAA 57.361 32.000 0.00 0.00 0.00 1.94
849 915 1.318576 TTGCTCTCACAGTCTCACGA 58.681 50.000 0.00 0.00 0.00 4.35
897 1206 1.065126 GGGTTCCACCTCATCCTCTTG 60.065 57.143 0.00 0.00 38.64 3.02
909 1218 4.352009 TCATCCTCTTGCTCTTCTCTCTT 58.648 43.478 0.00 0.00 0.00 2.85
910 1219 4.402155 TCATCCTCTTGCTCTTCTCTCTTC 59.598 45.833 0.00 0.00 0.00 2.87
911 1220 4.046286 TCCTCTTGCTCTTCTCTCTTCT 57.954 45.455 0.00 0.00 0.00 2.85
912 1221 4.016444 TCCTCTTGCTCTTCTCTCTTCTC 58.984 47.826 0.00 0.00 0.00 2.87
913 1222 4.019174 CCTCTTGCTCTTCTCTCTTCTCT 58.981 47.826 0.00 0.00 0.00 3.10
914 1223 4.096984 CCTCTTGCTCTTCTCTCTTCTCTC 59.903 50.000 0.00 0.00 0.00 3.20
915 1224 4.922206 TCTTGCTCTTCTCTCTTCTCTCT 58.078 43.478 0.00 0.00 0.00 3.10
1499 1814 1.668751 GACGGTGTGCTCTCTCTCTAG 59.331 57.143 0.00 0.00 0.00 2.43
1502 1819 2.099405 GGTGTGCTCTCTCTCTAGCTT 58.901 52.381 0.00 0.00 39.53 3.74
1506 1823 3.829026 TGTGCTCTCTCTCTAGCTTTGAA 59.171 43.478 0.00 0.00 39.53 2.69
1549 1866 7.890127 AGGGTATTTCTGACAAATGAAGAATCA 59.110 33.333 4.85 0.00 40.57 2.57
1563 1880 4.894784 GAAGAATCACTTCCACACCAGTA 58.105 43.478 0.00 0.00 46.48 2.74
1572 1889 5.014202 ACTTCCACACCAGTACAAAAGTTT 58.986 37.500 0.00 0.00 0.00 2.66
1573 1890 6.094325 CACTTCCACACCAGTACAAAAGTTTA 59.906 38.462 0.00 0.00 0.00 2.01
1575 1892 7.994334 ACTTCCACACCAGTACAAAAGTTTATA 59.006 33.333 0.00 0.00 0.00 0.98
1578 1895 7.658575 TCCACACCAGTACAAAAGTTTATACTC 59.341 37.037 8.74 0.00 31.99 2.59
1598 1916 6.030727 ACTCCTTCCCAAAATATAAGGCAT 57.969 37.500 0.00 0.00 38.70 4.40
1604 1922 9.533831 CCTTCCCAAAATATAAGGCATACTAAT 57.466 33.333 0.00 0.00 32.66 1.73
1713 2031 9.631257 TGTAAACATAGTTCATGATGGATCAAT 57.369 29.630 0.00 0.00 40.69 2.57
1737 2055 5.848406 TGATTTTGGTTTGGTATTGTGGAC 58.152 37.500 0.00 0.00 0.00 4.02
1843 2168 8.390921 TGATATACTATCTGGTAGATGGTGTCA 58.609 37.037 15.37 13.27 44.58 3.58
1894 2219 2.292257 ACTATAGGTGCTGGACTGGACA 60.292 50.000 4.43 0.00 0.00 4.02
1897 2222 2.042831 GGTGCTGGACTGGACATGC 61.043 63.158 0.00 0.00 0.00 4.06
1913 2240 5.009110 TGGACATGCGTCAAAATACTCAAAA 59.991 36.000 0.00 0.00 44.54 2.44
2083 2423 0.041238 TCAGGGGGACACTCACTAGG 59.959 60.000 0.00 0.00 0.00 3.02
2097 2437 6.097129 ACACTCACTAGGTCCTATTTTCTAGC 59.903 42.308 0.00 0.00 34.24 3.42
2131 2471 5.068987 TGCTTGTACAATTTGAAAGCTTCCT 59.931 36.000 23.39 0.00 42.87 3.36
2132 2472 5.403466 GCTTGTACAATTTGAAAGCTTCCTG 59.597 40.000 9.13 0.00 40.04 3.86
2136 2476 3.243975 ACAATTTGAAAGCTTCCTGCCTG 60.244 43.478 0.00 0.00 44.23 4.85
2178 2518 2.274542 TGAGTTTTCATGCCCTCCCTA 58.725 47.619 0.00 0.00 0.00 3.53
2572 2912 9.010029 GTTACATTTCTTATTTTGGACCTCTGA 57.990 33.333 0.00 0.00 0.00 3.27
2720 3060 8.352942 AGAAAAAGCAGTTAACACAATAAGGAG 58.647 33.333 8.61 0.00 0.00 3.69
2730 3070 4.817517 ACACAATAAGGAGTACCGTTGAG 58.182 43.478 0.00 0.00 41.83 3.02
2739 3079 3.243468 GGAGTACCGTTGAGGAGCTAATC 60.243 52.174 0.00 0.00 45.00 1.75
2741 3081 3.961408 AGTACCGTTGAGGAGCTAATCAT 59.039 43.478 1.43 0.00 45.00 2.45
2754 3094 5.205759 AGCTAATCATAAAATGCAAGGCC 57.794 39.130 0.00 0.00 0.00 5.19
2898 3247 8.735692 AAAACAATGTTTGATGTCAATTTCCT 57.264 26.923 12.50 0.00 35.55 3.36
2899 3248 9.829507 AAAACAATGTTTGATGTCAATTTCCTA 57.170 25.926 12.50 0.00 35.55 2.94
2902 3251 9.426837 ACAATGTTTGATGTCAATTTCCTATTG 57.573 29.630 0.00 0.00 35.55 1.90
2903 3252 9.426837 CAATGTTTGATGTCAATTTCCTATTGT 57.573 29.630 0.00 0.00 35.55 2.71
2905 3254 9.643693 ATGTTTGATGTCAATTTCCTATTGTTC 57.356 29.630 0.00 0.00 35.55 3.18
2963 3312 8.662781 TTTCCTCGTTTCATATAATCTTGGAG 57.337 34.615 0.00 0.00 0.00 3.86
2994 3344 8.674607 GTCTTATTGTTGTTATTAACTCAGGGG 58.325 37.037 7.99 1.72 0.00 4.79
3000 3350 6.016943 TGTTGTTATTAACTCAGGGGTTTTCG 60.017 38.462 7.99 0.00 0.00 3.46
3150 3500 7.150783 ACTGAATGTTTGAATAGAGAAAGCC 57.849 36.000 0.00 0.00 0.00 4.35
3174 3524 7.259882 CCTGTTTGATTCTGCAGCAATTATTA 58.740 34.615 9.47 0.00 0.00 0.98
3198 3548 6.340962 ACATCCTATTACTATTGCAGCGTA 57.659 37.500 0.00 0.00 0.00 4.42
3385 3741 6.075949 AGTATTGACAGTACAGAGGACCTA 57.924 41.667 10.38 0.00 0.00 3.08
3669 4028 7.883311 ACACAGTATATTCTTTTGGTGCTAACT 59.117 33.333 0.00 0.00 0.00 2.24
3699 4058 2.349627 CCGTTTTGGCATGCAAATGTTG 60.350 45.455 21.36 5.04 0.00 3.33
3782 4141 7.928908 TGCTTTAACTAACATGCTTTCTTTG 57.071 32.000 0.00 0.00 0.00 2.77
3852 4211 3.249799 TGTTAGTTGCTGGTCATGAAACG 59.750 43.478 0.00 0.00 0.00 3.60
3858 4217 0.798776 CTGGTCATGAAACGACAGGC 59.201 55.000 0.00 0.00 34.97 4.85
4035 4394 3.173965 TCCAGTAGCACTAAGGAAAGCT 58.826 45.455 0.00 0.00 40.92 3.74
4041 4400 4.357918 AGCACTAAGGAAAGCTCAAGAA 57.642 40.909 0.00 0.00 30.05 2.52
4178 4537 0.595095 CCTTGTGCTTCAGACAAGCC 59.405 55.000 8.06 0.00 46.03 4.35
4505 4867 4.797471 TCAAAGATTCGCAAAACCATGAG 58.203 39.130 0.00 0.00 0.00 2.90
4550 4912 2.026915 TGTGTATGACCTTGATGCTGCT 60.027 45.455 0.00 0.00 0.00 4.24
4944 5308 7.704899 GGTTACATTATTTTGTGCTCCCATTAC 59.295 37.037 0.00 0.00 0.00 1.89
4982 5346 3.017442 GTTTATCCCTTTCAGTGGAGGC 58.983 50.000 7.69 0.00 33.27 4.70
5156 5520 5.294552 GCACTATCCAATTACTTCAGTGTCC 59.705 44.000 0.00 0.00 35.49 4.02
5184 5548 6.101332 GCATGATCAGGTTGCTTTCAATTTA 58.899 36.000 9.42 0.00 34.29 1.40
5185 5549 6.759827 GCATGATCAGGTTGCTTTCAATTTAT 59.240 34.615 9.42 0.00 34.29 1.40
5217 5581 8.591072 AGGTATAAACTCTAAAACACTGTAGCA 58.409 33.333 0.00 0.00 0.00 3.49
5226 5590 1.113517 ACACTGTAGCACTCACGGGT 61.114 55.000 0.00 0.00 0.00 5.28
5240 5604 3.296854 TCACGGGTAGACTATGCAAGAT 58.703 45.455 0.00 0.00 0.00 2.40
5277 5641 8.177663 GTGATTATGTTCATGTTGGTCTTAGTG 58.822 37.037 0.00 0.00 0.00 2.74
5278 5642 6.494893 TTATGTTCATGTTGGTCTTAGTGC 57.505 37.500 0.00 0.00 0.00 4.40
5279 5643 3.146066 TGTTCATGTTGGTCTTAGTGCC 58.854 45.455 0.00 0.00 0.00 5.01
5280 5644 3.181445 TGTTCATGTTGGTCTTAGTGCCT 60.181 43.478 0.00 0.00 0.00 4.75
5281 5645 3.057969 TCATGTTGGTCTTAGTGCCTG 57.942 47.619 0.00 0.00 0.00 4.85
5282 5646 2.371841 TCATGTTGGTCTTAGTGCCTGT 59.628 45.455 0.00 0.00 0.00 4.00
5283 5647 3.149196 CATGTTGGTCTTAGTGCCTGTT 58.851 45.455 0.00 0.00 0.00 3.16
5284 5648 2.846193 TGTTGGTCTTAGTGCCTGTTC 58.154 47.619 0.00 0.00 0.00 3.18
5285 5649 1.798813 GTTGGTCTTAGTGCCTGTTCG 59.201 52.381 0.00 0.00 0.00 3.95
5286 5650 0.320374 TGGTCTTAGTGCCTGTTCGG 59.680 55.000 0.00 0.00 0.00 4.30
5287 5651 0.320697 GGTCTTAGTGCCTGTTCGGT 59.679 55.000 0.00 0.00 34.25 4.69
5288 5652 1.547372 GGTCTTAGTGCCTGTTCGGTA 59.453 52.381 0.00 0.00 34.25 4.02
5292 5656 4.592426 GTGCCTGTTCGGTACCTC 57.408 61.111 10.90 1.04 42.02 3.85
5293 5657 1.972978 GTGCCTGTTCGGTACCTCT 59.027 57.895 10.90 0.00 42.02 3.69
5294 5658 0.108756 GTGCCTGTTCGGTACCTCTC 60.109 60.000 10.90 0.30 42.02 3.20
5295 5659 1.255667 TGCCTGTTCGGTACCTCTCC 61.256 60.000 10.90 0.00 34.25 3.71
5296 5660 1.255667 GCCTGTTCGGTACCTCTCCA 61.256 60.000 10.90 0.46 34.25 3.86
5297 5661 0.818296 CCTGTTCGGTACCTCTCCAG 59.182 60.000 10.90 10.05 0.00 3.86
5298 5662 1.546961 CTGTTCGGTACCTCTCCAGT 58.453 55.000 10.90 0.00 0.00 4.00
5299 5663 1.893801 CTGTTCGGTACCTCTCCAGTT 59.106 52.381 10.90 0.00 0.00 3.16
5300 5664 2.299297 CTGTTCGGTACCTCTCCAGTTT 59.701 50.000 10.90 0.00 0.00 2.66
5301 5665 2.298163 TGTTCGGTACCTCTCCAGTTTC 59.702 50.000 10.90 0.00 0.00 2.78
5302 5666 2.297698 TCGGTACCTCTCCAGTTTCA 57.702 50.000 10.90 0.00 0.00 2.69
5303 5667 2.600790 TCGGTACCTCTCCAGTTTCAA 58.399 47.619 10.90 0.00 0.00 2.69
5304 5668 2.967201 TCGGTACCTCTCCAGTTTCAAA 59.033 45.455 10.90 0.00 0.00 2.69
5305 5669 3.388676 TCGGTACCTCTCCAGTTTCAAAA 59.611 43.478 10.90 0.00 0.00 2.44
5306 5670 3.497262 CGGTACCTCTCCAGTTTCAAAAC 59.503 47.826 10.90 0.00 39.17 2.43
5308 5672 4.755629 GGTACCTCTCCAGTTTCAAAACTC 59.244 45.833 4.06 0.00 45.65 3.01
5309 5673 3.821748 ACCTCTCCAGTTTCAAAACTCC 58.178 45.455 5.17 0.00 45.65 3.85
5310 5674 2.808543 CCTCTCCAGTTTCAAAACTCCG 59.191 50.000 5.17 0.05 45.65 4.63
5311 5675 2.218603 TCTCCAGTTTCAAAACTCCGC 58.781 47.619 5.17 0.00 45.65 5.54
5312 5676 2.158813 TCTCCAGTTTCAAAACTCCGCT 60.159 45.455 5.17 0.00 45.65 5.52
5313 5677 2.218603 TCCAGTTTCAAAACTCCGCTC 58.781 47.619 5.17 0.00 45.65 5.03
5314 5678 1.266989 CCAGTTTCAAAACTCCGCTCC 59.733 52.381 5.17 0.00 45.65 4.70
5315 5679 1.069906 CAGTTTCAAAACTCCGCTCCG 60.070 52.381 5.17 0.00 45.65 4.63
5316 5680 0.942252 GTTTCAAAACTCCGCTCCGT 59.058 50.000 0.00 0.00 36.03 4.69
5317 5681 0.941542 TTTCAAAACTCCGCTCCGTG 59.058 50.000 0.00 0.00 0.00 4.94
5318 5682 1.503818 TTCAAAACTCCGCTCCGTGC 61.504 55.000 0.00 0.00 38.57 5.34
5334 5698 3.071206 GCGAGGAGCTGGGTCTGA 61.071 66.667 0.00 0.00 44.04 3.27
5335 5699 3.074999 GCGAGGAGCTGGGTCTGAG 62.075 68.421 0.00 0.00 44.04 3.35
5336 5700 2.899505 GAGGAGCTGGGTCTGAGC 59.100 66.667 0.00 0.00 36.65 4.26
5337 5701 2.686835 AGGAGCTGGGTCTGAGCC 60.687 66.667 18.72 18.72 37.12 4.70
5338 5702 4.154347 GGAGCTGGGTCTGAGCCG 62.154 72.222 19.98 15.33 38.98 5.52
5339 5703 4.828925 GAGCTGGGTCTGAGCCGC 62.829 72.222 24.74 24.74 38.98 6.53
5341 5705 4.828925 GCTGGGTCTGAGCCGCTC 62.829 72.222 24.80 13.81 38.98 5.03
5342 5706 3.073735 CTGGGTCTGAGCCGCTCT 61.074 66.667 20.87 0.00 38.98 4.09
5343 5707 3.368190 CTGGGTCTGAGCCGCTCTG 62.368 68.421 20.87 19.66 38.98 3.35
5344 5708 3.386237 GGGTCTGAGCCGCTCTGT 61.386 66.667 20.87 0.00 32.50 3.41
5345 5709 2.125753 GGTCTGAGCCGCTCTGTG 60.126 66.667 20.87 11.18 32.50 3.66
5346 5710 2.813042 GTCTGAGCCGCTCTGTGC 60.813 66.667 20.87 13.38 38.57 4.57
5385 5749 4.400961 GCTCCGGGAGTTGCAGCT 62.401 66.667 24.30 1.30 31.39 4.24
5386 5750 2.435586 CTCCGGGAGTTGCAGCTG 60.436 66.667 16.15 10.11 0.00 4.24
5387 5751 3.965539 CTCCGGGAGTTGCAGCTGG 62.966 68.421 17.12 3.12 0.00 4.85
5388 5752 4.020617 CCGGGAGTTGCAGCTGGA 62.021 66.667 17.12 10.66 0.00 3.86
5389 5753 2.435586 CGGGAGTTGCAGCTGGAG 60.436 66.667 17.12 0.00 0.00 3.86
5390 5754 2.749441 GGGAGTTGCAGCTGGAGC 60.749 66.667 17.12 15.63 42.49 4.70
5400 5764 2.107953 GCTGGAGCGGAGTGGATC 59.892 66.667 0.00 0.00 0.00 3.36
5401 5765 2.818132 CTGGAGCGGAGTGGATCC 59.182 66.667 4.20 4.20 45.64 3.36
5409 5773 1.522569 GGAGTGGATCCGAACAGGG 59.477 63.158 7.39 0.00 38.67 4.45
5410 5774 1.153349 GAGTGGATCCGAACAGGGC 60.153 63.158 7.39 0.00 41.52 5.19
5411 5775 1.613630 AGTGGATCCGAACAGGGCT 60.614 57.895 7.39 0.00 41.52 5.19
5412 5776 1.201429 AGTGGATCCGAACAGGGCTT 61.201 55.000 7.39 0.00 41.52 4.35
5413 5777 0.322546 GTGGATCCGAACAGGGCTTT 60.323 55.000 7.39 0.00 41.52 3.51
5414 5778 1.065709 GTGGATCCGAACAGGGCTTTA 60.066 52.381 7.39 0.00 41.52 1.85
5415 5779 1.843851 TGGATCCGAACAGGGCTTTAT 59.156 47.619 7.39 0.00 41.52 1.40
5416 5780 2.241176 TGGATCCGAACAGGGCTTTATT 59.759 45.455 7.39 0.00 41.52 1.40
5417 5781 3.456644 TGGATCCGAACAGGGCTTTATTA 59.543 43.478 7.39 0.00 41.52 0.98
5418 5782 4.104102 TGGATCCGAACAGGGCTTTATTAT 59.896 41.667 7.39 0.00 41.52 1.28
5419 5783 5.308497 TGGATCCGAACAGGGCTTTATTATA 59.692 40.000 7.39 0.00 41.52 0.98
5450 5814 2.503356 AGATCAGTTGTAAGCTCCCAGG 59.497 50.000 0.00 0.00 0.00 4.45
5473 5837 1.074775 GCCTGTCCCACCATCAACA 59.925 57.895 0.00 0.00 0.00 3.33
5519 5883 8.756864 GTTTTAAACACTAAATGAAATGCGGAA 58.243 29.630 2.62 0.00 0.00 4.30
5523 5887 5.460646 ACACTAAATGAAATGCGGAAAGTG 58.539 37.500 0.00 0.00 38.18 3.16
5524 5888 4.324402 CACTAAATGAAATGCGGAAAGTGC 59.676 41.667 0.00 0.00 0.00 4.40
5545 5909 4.657075 CAGTGAAATTGCAATTTGGAGC 57.343 40.909 35.57 23.14 38.64 4.70
5556 5920 3.507622 GCAATTTGGAGCTTTAGTCACCT 59.492 43.478 0.00 0.00 0.00 4.00
5557 5921 4.021981 GCAATTTGGAGCTTTAGTCACCTT 60.022 41.667 0.00 0.00 0.00 3.50
5559 5923 5.966742 ATTTGGAGCTTTAGTCACCTTTC 57.033 39.130 0.00 0.00 0.00 2.62
5560 5924 3.418684 TGGAGCTTTAGTCACCTTTCC 57.581 47.619 0.00 0.00 0.00 3.13
5564 5928 2.979678 AGCTTTAGTCACCTTTCCCTGA 59.020 45.455 0.00 0.00 0.00 3.86
5565 5929 3.075148 GCTTTAGTCACCTTTCCCTGAC 58.925 50.000 0.00 0.00 37.63 3.51
5566 5930 3.496160 GCTTTAGTCACCTTTCCCTGACA 60.496 47.826 0.00 0.00 39.49 3.58
5567 5931 4.714632 CTTTAGTCACCTTTCCCTGACAA 58.285 43.478 0.00 0.00 39.49 3.18
5570 5934 2.777692 AGTCACCTTTCCCTGACAAAGA 59.222 45.455 0.00 0.00 39.49 2.52
5571 5935 3.142174 GTCACCTTTCCCTGACAAAGAG 58.858 50.000 0.00 0.00 37.36 2.85
5572 5936 3.045634 TCACCTTTCCCTGACAAAGAGA 58.954 45.455 0.00 0.00 33.34 3.10
5573 5937 3.458118 TCACCTTTCCCTGACAAAGAGAA 59.542 43.478 0.00 0.00 33.34 2.87
5575 5939 3.181439 ACCTTTCCCTGACAAAGAGAAGG 60.181 47.826 0.00 0.00 36.18 3.46
5577 5941 4.263683 CCTTTCCCTGACAAAGAGAAGGAT 60.264 45.833 0.00 0.00 33.96 3.24
5578 5942 5.045578 CCTTTCCCTGACAAAGAGAAGGATA 60.046 44.000 0.00 0.00 33.96 2.59
5579 5943 6.448369 TTTCCCTGACAAAGAGAAGGATAA 57.552 37.500 0.00 0.00 30.92 1.75
5580 5944 6.448369 TTCCCTGACAAAGAGAAGGATAAA 57.552 37.500 0.00 0.00 30.92 1.40
5587 5983 7.450074 TGACAAAGAGAAGGATAAAAGCACTA 58.550 34.615 0.00 0.00 0.00 2.74
5596 5992 4.387862 AGGATAAAAGCACTACACGTTTCG 59.612 41.667 0.00 0.00 0.00 3.46
5597 5993 4.386652 GGATAAAAGCACTACACGTTTCGA 59.613 41.667 0.00 0.00 0.00 3.71
5600 5996 4.806342 AAAGCACTACACGTTTCGAAAT 57.194 36.364 14.69 0.00 0.00 2.17
5615 6011 5.834239 TTCGAAATCACTCGACTAAAACC 57.166 39.130 0.00 0.00 46.95 3.27
5629 6025 5.661458 GACTAAAACCATAGCTGCTGTAGA 58.339 41.667 13.43 0.00 0.00 2.59
5635 6031 2.959030 CCATAGCTGCTGTAGACCTGTA 59.041 50.000 13.43 0.00 0.00 2.74
5647 6043 2.246719 GACCTGTAGTCATCCATGCC 57.753 55.000 0.00 0.00 45.55 4.40
5649 6045 0.465705 CCTGTAGTCATCCATGCCGT 59.534 55.000 0.00 0.00 0.00 5.68
5650 6046 1.539065 CCTGTAGTCATCCATGCCGTC 60.539 57.143 0.00 0.00 0.00 4.79
5651 6047 1.410517 CTGTAGTCATCCATGCCGTCT 59.589 52.381 0.00 0.00 0.00 4.18
5673 6070 6.316390 GTCTTGTGATTACTTGAATGGGTAGG 59.684 42.308 0.00 0.00 0.00 3.18
5676 6073 5.133221 GTGATTACTTGAATGGGTAGGCAT 58.867 41.667 0.00 0.00 0.00 4.40
5679 6076 1.035139 CTTGAATGGGTAGGCATGGC 58.965 55.000 12.14 12.14 0.00 4.40
5694 6091 3.548818 GGCATGGCGCTGATACTAAAAAG 60.549 47.826 7.64 0.00 41.91 2.27
5701 6098 4.966366 GCGCTGATACTAAAAAGAATGCAG 59.034 41.667 0.00 0.00 0.00 4.41
5730 6127 5.382618 AATCAATTGAGACCAAGCTTCAC 57.617 39.130 14.54 0.00 35.48 3.18
5734 6131 2.154854 TGAGACCAAGCTTCACTTCG 57.845 50.000 0.00 0.00 36.04 3.79
5741 6138 2.618709 CCAAGCTTCACTTCGTTCCTTT 59.381 45.455 0.00 0.00 36.04 3.11
5743 6140 3.194005 AGCTTCACTTCGTTCCTTTCA 57.806 42.857 0.00 0.00 0.00 2.69
5746 6143 3.303395 GCTTCACTTCGTTCCTTTCACTG 60.303 47.826 0.00 0.00 0.00 3.66
5749 6146 2.936498 CACTTCGTTCCTTTCACTGTGT 59.064 45.455 7.79 0.00 0.00 3.72
5757 6154 5.569413 GTTCCTTTCACTGTGTTACACTTG 58.431 41.667 16.79 13.05 35.11 3.16
5758 6155 4.839121 TCCTTTCACTGTGTTACACTTGT 58.161 39.130 16.79 12.07 35.11 3.16
5759 6156 4.634004 TCCTTTCACTGTGTTACACTTGTG 59.366 41.667 24.29 24.29 39.12 3.33
5760 6157 4.634004 CCTTTCACTGTGTTACACTTGTGA 59.366 41.667 26.75 26.75 41.90 3.58
5764 6161 6.751514 TCACTGTGTTACACTTGTGATTTT 57.248 33.333 26.75 2.89 40.38 1.82
5769 6166 5.163602 TGTGTTACACTTGTGATTTTGGGTC 60.164 40.000 16.79 0.00 35.11 4.46
5776 6173 7.209475 ACACTTGTGATTTTGGGTCTAAAATG 58.791 34.615 7.83 0.00 39.60 2.32
5782 6179 7.084486 GTGATTTTGGGTCTAAAATGACACTC 58.916 38.462 13.74 1.52 41.05 3.51
5799 6196 9.512588 AATGACACTCAACAAATATTCTCTTCT 57.487 29.630 0.00 0.00 0.00 2.85
5800 6197 8.315391 TGACACTCAACAAATATTCTCTTCTG 57.685 34.615 0.00 0.00 0.00 3.02
5807 6204 6.011122 ACAAATATTCTCTTCTGCAGGGAT 57.989 37.500 15.13 0.00 29.23 3.85
5873 6270 5.621193 ACTTAGCACTGAGGTAAACACATT 58.379 37.500 0.00 0.00 39.50 2.71
5881 6278 8.458843 GCACTGAGGTAAACACATTAATATGTT 58.541 33.333 6.28 6.28 42.29 2.71
5942 6339 6.076981 ACAAAACTACAGATTGCCAAGAAG 57.923 37.500 0.00 0.00 0.00 2.85
5950 6347 2.909006 AGATTGCCAAGAAGACCTCTCA 59.091 45.455 0.00 0.00 31.02 3.27
5952 6349 1.722034 TGCCAAGAAGACCTCTCACT 58.278 50.000 0.00 0.00 31.02 3.41
5957 6354 4.262678 GCCAAGAAGACCTCTCACTAGTTT 60.263 45.833 0.00 0.00 31.02 2.66
5958 6355 5.743422 GCCAAGAAGACCTCTCACTAGTTTT 60.743 44.000 0.00 0.00 31.02 2.43
5959 6356 5.929415 CCAAGAAGACCTCTCACTAGTTTTC 59.071 44.000 0.00 0.00 31.02 2.29
5960 6357 6.239458 CCAAGAAGACCTCTCACTAGTTTTCT 60.239 42.308 0.00 0.00 31.02 2.52
5961 6358 6.987403 AGAAGACCTCTCACTAGTTTTCTT 57.013 37.500 0.00 0.00 0.00 2.52
5962 6359 7.368198 AGAAGACCTCTCACTAGTTTTCTTT 57.632 36.000 0.00 0.00 0.00 2.52
5963 6360 8.480133 AGAAGACCTCTCACTAGTTTTCTTTA 57.520 34.615 0.00 0.00 0.00 1.85
5964 6361 8.581578 AGAAGACCTCTCACTAGTTTTCTTTAG 58.418 37.037 0.00 0.00 0.00 1.85
5965 6362 7.842887 AGACCTCTCACTAGTTTTCTTTAGT 57.157 36.000 0.00 0.00 0.00 2.24
5966 6363 7.662897 AGACCTCTCACTAGTTTTCTTTAGTG 58.337 38.462 0.00 5.52 45.11 2.74
5967 6364 6.224584 ACCTCTCACTAGTTTTCTTTAGTGC 58.775 40.000 0.00 0.00 44.00 4.40
5968 6365 5.639931 CCTCTCACTAGTTTTCTTTAGTGCC 59.360 44.000 0.00 0.00 44.00 5.01
5969 6366 5.227908 TCTCACTAGTTTTCTTTAGTGCCG 58.772 41.667 0.00 2.16 44.00 5.69
5970 6367 4.952460 TCACTAGTTTTCTTTAGTGCCGT 58.048 39.130 0.00 0.00 44.00 5.68
5971 6368 5.362263 TCACTAGTTTTCTTTAGTGCCGTT 58.638 37.500 0.00 0.00 44.00 4.44
5972 6369 5.235616 TCACTAGTTTTCTTTAGTGCCGTTG 59.764 40.000 0.00 0.00 44.00 4.10
5973 6370 5.235616 CACTAGTTTTCTTTAGTGCCGTTGA 59.764 40.000 0.00 0.00 40.01 3.18
5976 6373 4.578928 AGTTTTCTTTAGTGCCGTTGACAT 59.421 37.500 0.00 0.00 0.00 3.06
5980 6377 4.854399 TCTTTAGTGCCGTTGACATTTTG 58.146 39.130 0.00 0.00 0.00 2.44
5981 6378 3.634568 TTAGTGCCGTTGACATTTTGG 57.365 42.857 0.00 0.00 0.00 3.28
5996 6393 4.283978 ACATTTTGGCAGAATGATCCAACA 59.716 37.500 30.51 0.00 37.85 3.33
5997 6394 5.046159 ACATTTTGGCAGAATGATCCAACAT 60.046 36.000 30.51 8.65 37.85 2.71
6007 6404 7.430441 CAGAATGATCCAACATATGCATTCAA 58.570 34.615 22.53 0.00 42.27 2.69
6024 6421 9.798994 ATGCATTCAATGATTACTTTTCTTCTC 57.201 29.630 0.00 0.00 0.00 2.87
6034 6435 9.838339 TGATTACTTTTCTTCTCCTGATTATCC 57.162 33.333 0.00 0.00 0.00 2.59
6069 6470 2.505819 AGTCCATCGGGCTAGACAAAAT 59.494 45.455 0.00 0.00 0.00 1.82
6087 6488 4.751767 AAATCAAAGCAAAACAGGGTGA 57.248 36.364 0.00 0.00 0.00 4.02
6090 6491 2.687935 TCAAAGCAAAACAGGGTGAGAC 59.312 45.455 0.00 0.00 0.00 3.36
6094 6495 1.807142 GCAAAACAGGGTGAGACTAGC 59.193 52.381 0.00 0.00 0.00 3.42
6096 6497 3.070018 CAAAACAGGGTGAGACTAGCAG 58.930 50.000 0.00 0.00 0.00 4.24
6097 6498 2.016905 AACAGGGTGAGACTAGCAGT 57.983 50.000 0.00 0.00 0.00 4.40
6098 6499 1.551452 ACAGGGTGAGACTAGCAGTC 58.449 55.000 7.88 7.88 45.38 3.51
6161 6564 7.802720 GCAATTAAATTTGGACATGTTTGGAAC 59.197 33.333 0.00 0.00 0.00 3.62
6198 6601 6.801862 CAGAAATTTTGACCCGACTAAATGTC 59.198 38.462 0.00 0.00 42.06 3.06
6269 6672 6.261381 AGGTTGCGTAAACTGTAAAGAAATGA 59.739 34.615 1.91 0.00 38.92 2.57
6275 6678 9.000018 GCGTAAACTGTAAAGAAATGAATCATC 58.000 33.333 0.00 0.00 0.00 2.92
6303 6706 8.292448 ACTTGCTGATTTTGACAGTTAATGTAG 58.708 33.333 0.00 0.00 44.17 2.74
6304 6707 7.744087 TGCTGATTTTGACAGTTAATGTAGT 57.256 32.000 0.00 0.00 44.17 2.73
6305 6708 8.840833 TGCTGATTTTGACAGTTAATGTAGTA 57.159 30.769 0.00 0.00 44.17 1.82
6337 6740 6.362248 AGTACCTTGTCTGTTTGTATGGTTT 58.638 36.000 0.00 0.00 0.00 3.27
6366 6769 1.522355 CAGAGTATGCGTGGGCTGG 60.522 63.158 0.00 0.00 40.82 4.85
6393 9025 4.859629 ACTTGTTGAGTTGTTCTTCGTC 57.140 40.909 0.00 0.00 33.92 4.20
6408 9040 2.933495 TCGTCGAAGGTCCATTAGTG 57.067 50.000 0.00 0.00 0.00 2.74
6430 9062 0.600557 CGGATAGGAGCTAGTGCAGG 59.399 60.000 0.00 0.00 42.74 4.85
6431 9063 1.710816 GGATAGGAGCTAGTGCAGGT 58.289 55.000 0.00 0.00 42.74 4.00
6452 9084 2.320681 ATATACCCTGCCGAGGCTTA 57.679 50.000 15.75 2.23 42.51 3.09
6454 9086 0.105658 ATACCCTGCCGAGGCTTAGA 60.106 55.000 15.75 0.00 42.51 2.10
6473 9105 2.820330 GAGCATCTCAAGAGCAGGTAC 58.180 52.381 0.00 0.00 0.00 3.34
6475 9107 1.208052 GCATCTCAAGAGCAGGTACCA 59.792 52.381 15.94 0.00 0.00 3.25
6497 9129 5.511888 CCAAATTTGAGCCTCCATTTGTTCT 60.512 40.000 19.86 0.00 35.64 3.01
6523 9155 4.260170 GACAACAGAGCTTGATCCTCATT 58.740 43.478 0.00 0.00 0.00 2.57
6539 9171 1.305213 ATTTGTCCGCCCTGGCAAT 60.305 52.632 9.17 0.00 42.06 3.56
6541 9173 4.738998 TGTCCGCCCTGGCAATGG 62.739 66.667 9.17 1.52 42.06 3.16
6566 9199 2.767960 CCCCATTTCCCCTTCTCAAATG 59.232 50.000 0.00 0.00 37.29 2.32
6569 9202 4.646492 CCCATTTCCCCTTCTCAAATGTAG 59.354 45.833 0.00 0.00 36.27 2.74
6593 9226 6.987992 AGCACAAATCAATTCAACAGTTCAAT 59.012 30.769 0.00 0.00 0.00 2.57
6599 9232 5.531634 TCAATTCAACAGTTCAATCAAGCC 58.468 37.500 0.00 0.00 0.00 4.35
6603 9236 6.647334 TTCAACAGTTCAATCAAGCCAATA 57.353 33.333 0.00 0.00 0.00 1.90
6615 9248 4.067192 TCAAGCCAATATGATCCATGACG 58.933 43.478 0.00 0.00 0.00 4.35
6659 9292 6.069684 GCATAGCTGCTAAAACAGATGAAT 57.930 37.500 14.13 0.00 45.32 2.57
6668 9301 9.252962 CTGCTAAAACAGATGAATCAAGTTTTT 57.747 29.630 20.85 12.13 42.16 1.94
6669 9302 9.248291 TGCTAAAACAGATGAATCAAGTTTTTC 57.752 29.630 20.85 15.84 42.16 2.29
6682 9315 7.964545 ATCAAGTTTTTCTTTTACGTGTGTC 57.035 32.000 0.00 0.00 33.63 3.67
6697 9330 1.597195 TGTGTCGATGTCTTTGTGTGC 59.403 47.619 0.00 0.00 0.00 4.57
6704 9337 3.122780 CGATGTCTTTGTGTGCGTTGATA 59.877 43.478 0.00 0.00 0.00 2.15
6741 9374 2.750301 CATCCATGATGCTTGTGTCG 57.250 50.000 0.00 0.00 33.17 4.35
6742 9375 1.332686 CATCCATGATGCTTGTGTCGG 59.667 52.381 0.00 0.00 33.17 4.79
6743 9376 0.392863 TCCATGATGCTTGTGTCGGG 60.393 55.000 0.00 0.00 0.00 5.14
6744 9377 0.392863 CCATGATGCTTGTGTCGGGA 60.393 55.000 0.00 0.00 0.00 5.14
6745 9378 1.012086 CATGATGCTTGTGTCGGGAG 58.988 55.000 0.00 0.00 0.00 4.30
6746 9379 0.615331 ATGATGCTTGTGTCGGGAGT 59.385 50.000 0.00 0.00 0.00 3.85
6747 9380 1.262417 TGATGCTTGTGTCGGGAGTA 58.738 50.000 0.00 0.00 0.00 2.59
6748 9381 1.621317 TGATGCTTGTGTCGGGAGTAA 59.379 47.619 0.00 0.00 0.00 2.24
6749 9382 2.037902 TGATGCTTGTGTCGGGAGTAAA 59.962 45.455 0.00 0.00 0.00 2.01
6750 9383 2.851263 TGCTTGTGTCGGGAGTAAAT 57.149 45.000 0.00 0.00 0.00 1.40
6751 9384 3.965379 TGCTTGTGTCGGGAGTAAATA 57.035 42.857 0.00 0.00 0.00 1.40
6752 9385 3.857052 TGCTTGTGTCGGGAGTAAATAG 58.143 45.455 0.00 0.00 0.00 1.73
6753 9386 2.608090 GCTTGTGTCGGGAGTAAATAGC 59.392 50.000 0.00 0.00 0.00 2.97
6754 9387 3.857052 CTTGTGTCGGGAGTAAATAGCA 58.143 45.455 0.00 0.00 0.00 3.49
6755 9388 4.442706 CTTGTGTCGGGAGTAAATAGCAT 58.557 43.478 0.00 0.00 0.00 3.79
6756 9389 5.597806 CTTGTGTCGGGAGTAAATAGCATA 58.402 41.667 0.00 0.00 0.00 3.14
6757 9390 5.601583 TGTGTCGGGAGTAAATAGCATAA 57.398 39.130 0.00 0.00 0.00 1.90
6758 9391 5.979993 TGTGTCGGGAGTAAATAGCATAAA 58.020 37.500 0.00 0.00 0.00 1.40
6759 9392 6.408035 TGTGTCGGGAGTAAATAGCATAAAA 58.592 36.000 0.00 0.00 0.00 1.52
6760 9393 6.314400 TGTGTCGGGAGTAAATAGCATAAAAC 59.686 38.462 0.00 0.00 0.00 2.43
6761 9394 6.537660 GTGTCGGGAGTAAATAGCATAAAACT 59.462 38.462 0.00 0.00 0.00 2.66
6762 9395 7.707893 GTGTCGGGAGTAAATAGCATAAAACTA 59.292 37.037 0.00 0.00 0.00 2.24
6763 9396 7.707893 TGTCGGGAGTAAATAGCATAAAACTAC 59.292 37.037 0.00 0.00 0.00 2.73
6764 9397 7.924947 GTCGGGAGTAAATAGCATAAAACTACT 59.075 37.037 0.00 0.00 0.00 2.57
6765 9398 9.135189 TCGGGAGTAAATAGCATAAAACTACTA 57.865 33.333 0.00 0.00 0.00 1.82
6766 9399 9.189723 CGGGAGTAAATAGCATAAAACTACTAC 57.810 37.037 0.00 0.00 0.00 2.73
6775 9408 7.845066 AGCATAAAACTACTACTTTACAGGC 57.155 36.000 0.00 0.00 0.00 4.85
6776 9409 7.621796 AGCATAAAACTACTACTTTACAGGCT 58.378 34.615 0.00 0.00 0.00 4.58
6777 9410 8.755977 AGCATAAAACTACTACTTTACAGGCTA 58.244 33.333 0.00 0.00 0.00 3.93
6778 9411 9.543783 GCATAAAACTACTACTTTACAGGCTAT 57.456 33.333 0.00 0.00 0.00 2.97
6781 9414 7.492077 AAACTACTACTTTACAGGCTATGGT 57.508 36.000 0.00 0.00 0.00 3.55
6782 9415 7.492077 AACTACTACTTTACAGGCTATGGTT 57.508 36.000 0.00 0.00 0.00 3.67
6783 9416 7.492077 ACTACTACTTTACAGGCTATGGTTT 57.508 36.000 0.00 0.00 0.00 3.27
6784 9417 7.554211 ACTACTACTTTACAGGCTATGGTTTC 58.446 38.462 0.00 0.00 0.00 2.78
6785 9418 6.368779 ACTACTTTACAGGCTATGGTTTCA 57.631 37.500 0.00 0.00 0.00 2.69
6786 9419 6.775708 ACTACTTTACAGGCTATGGTTTCAA 58.224 36.000 0.00 0.00 0.00 2.69
6787 9420 7.228590 ACTACTTTACAGGCTATGGTTTCAAA 58.771 34.615 0.00 0.00 0.00 2.69
6788 9421 6.969993 ACTTTACAGGCTATGGTTTCAAAA 57.030 33.333 0.00 0.00 0.00 2.44
6789 9422 7.354751 ACTTTACAGGCTATGGTTTCAAAAA 57.645 32.000 0.00 0.00 0.00 1.94
6831 9464 9.793259 TTTTTCTCAGATAACTACCAAGTCAAT 57.207 29.630 0.00 0.00 33.75 2.57
6832 9465 8.777865 TTTCTCAGATAACTACCAAGTCAATG 57.222 34.615 0.00 0.00 33.75 2.82
6833 9466 6.878317 TCTCAGATAACTACCAAGTCAATGG 58.122 40.000 0.00 0.00 46.38 3.16
6841 9474 1.331214 CCAAGTCAATGGTTGGCTGT 58.669 50.000 0.00 0.00 46.66 4.40
6842 9475 1.688197 CCAAGTCAATGGTTGGCTGTT 59.312 47.619 0.00 0.00 46.66 3.16
6843 9476 2.102925 CCAAGTCAATGGTTGGCTGTTT 59.897 45.455 0.00 0.00 46.66 2.83
6844 9477 3.383761 CAAGTCAATGGTTGGCTGTTTC 58.616 45.455 0.00 0.00 46.66 2.78
6845 9478 2.665165 AGTCAATGGTTGGCTGTTTCA 58.335 42.857 0.00 0.00 45.39 2.69
6846 9479 3.030291 AGTCAATGGTTGGCTGTTTCAA 58.970 40.909 0.00 0.00 45.39 2.69
6847 9480 3.450457 AGTCAATGGTTGGCTGTTTCAAA 59.550 39.130 0.00 0.00 45.39 2.69
6848 9481 4.081198 AGTCAATGGTTGGCTGTTTCAAAA 60.081 37.500 0.00 0.00 45.39 2.44
6849 9482 4.633565 GTCAATGGTTGGCTGTTTCAAAAA 59.366 37.500 0.00 0.00 31.13 1.94
6872 9505 9.521841 AAAAACCCCAAATTCTCTTTGTTAAAA 57.478 25.926 0.00 0.00 0.00 1.52
6873 9506 9.521841 AAAACCCCAAATTCTCTTTGTTAAAAA 57.478 25.926 0.00 0.00 0.00 1.94
6896 9529 8.751302 AAAATTAAACATGTTTATGACGGGTC 57.249 30.769 27.14 0.00 37.73 4.46
6897 9530 5.533533 TTAAACATGTTTATGACGGGTCG 57.466 39.130 27.14 0.00 37.73 4.79
6898 9531 2.018542 ACATGTTTATGACGGGTCGG 57.981 50.000 0.00 0.00 37.73 4.79
6899 9532 1.551430 ACATGTTTATGACGGGTCGGA 59.449 47.619 0.00 0.00 37.73 4.55
6900 9533 1.931172 CATGTTTATGACGGGTCGGAC 59.069 52.381 0.00 0.00 36.36 4.79
6901 9534 0.247185 TGTTTATGACGGGTCGGACC 59.753 55.000 19.06 19.06 37.60 4.46
6914 9547 3.122971 GGACCCGCCGCTAAACAC 61.123 66.667 0.00 0.00 0.00 3.32
6915 9548 2.357760 GACCCGCCGCTAAACACA 60.358 61.111 0.00 0.00 0.00 3.72
6916 9549 2.667199 ACCCGCCGCTAAACACAC 60.667 61.111 0.00 0.00 0.00 3.82
6917 9550 3.428282 CCCGCCGCTAAACACACC 61.428 66.667 0.00 0.00 0.00 4.16
6918 9551 3.784412 CCGCCGCTAAACACACCG 61.784 66.667 0.00 0.00 0.00 4.94
6919 9552 3.039588 CGCCGCTAAACACACCGT 61.040 61.111 0.00 0.00 0.00 4.83
6920 9553 2.600475 CGCCGCTAAACACACCGTT 61.600 57.895 0.00 0.00 40.50 4.44
6934 9567 3.243855 CCGTTTGGTTGACCGTTTG 57.756 52.632 0.00 0.00 39.43 2.93
6935 9568 0.452585 CCGTTTGGTTGACCGTTTGT 59.547 50.000 0.00 0.00 39.43 2.83
6936 9569 1.135344 CCGTTTGGTTGACCGTTTGTT 60.135 47.619 0.00 0.00 39.43 2.83
6937 9570 2.597520 CGTTTGGTTGACCGTTTGTTT 58.402 42.857 0.00 0.00 39.43 2.83
6938 9571 2.342948 CGTTTGGTTGACCGTTTGTTTG 59.657 45.455 0.00 0.00 39.43 2.93
6939 9572 3.576648 GTTTGGTTGACCGTTTGTTTGA 58.423 40.909 0.00 0.00 39.43 2.69
6940 9573 2.923605 TGGTTGACCGTTTGTTTGAC 57.076 45.000 0.00 0.00 39.43 3.18
6941 9574 1.473278 TGGTTGACCGTTTGTTTGACC 59.527 47.619 0.00 0.00 39.43 4.02
6942 9575 1.532298 GGTTGACCGTTTGTTTGACCG 60.532 52.381 0.00 0.00 0.00 4.79
6943 9576 1.130938 GTTGACCGTTTGTTTGACCGT 59.869 47.619 0.00 0.00 0.00 4.83
6944 9577 1.451067 TGACCGTTTGTTTGACCGTT 58.549 45.000 0.00 0.00 0.00 4.44
6945 9578 2.625737 TGACCGTTTGTTTGACCGTTA 58.374 42.857 0.00 0.00 0.00 3.18
6946 9579 3.005554 TGACCGTTTGTTTGACCGTTAA 58.994 40.909 0.00 0.00 0.00 2.01
6947 9580 3.181512 TGACCGTTTGTTTGACCGTTAAC 60.182 43.478 0.00 0.00 0.00 2.01
6948 9581 3.009026 ACCGTTTGTTTGACCGTTAACT 58.991 40.909 3.71 0.00 0.00 2.24
6949 9582 3.181508 ACCGTTTGTTTGACCGTTAACTG 60.182 43.478 3.71 0.00 0.00 3.16
6950 9583 3.063725 CCGTTTGTTTGACCGTTAACTGA 59.936 43.478 3.84 0.00 0.00 3.41
6951 9584 4.023783 CGTTTGTTTGACCGTTAACTGAC 58.976 43.478 3.84 0.00 0.00 3.51
6952 9585 4.201744 CGTTTGTTTGACCGTTAACTGACT 60.202 41.667 3.84 0.00 0.00 3.41
6953 9586 5.633927 GTTTGTTTGACCGTTAACTGACTT 58.366 37.500 3.84 0.00 0.00 3.01
6954 9587 4.868450 TGTTTGACCGTTAACTGACTTG 57.132 40.909 3.84 0.00 0.00 3.16
6955 9588 4.255301 TGTTTGACCGTTAACTGACTTGT 58.745 39.130 3.84 0.00 0.00 3.16
6956 9589 4.093703 TGTTTGACCGTTAACTGACTTGTG 59.906 41.667 3.84 0.00 0.00 3.33
6957 9590 2.828877 TGACCGTTAACTGACTTGTGG 58.171 47.619 3.84 0.00 0.00 4.17
6958 9591 2.140717 GACCGTTAACTGACTTGTGGG 58.859 52.381 3.84 0.00 0.00 4.61
6959 9592 1.202722 ACCGTTAACTGACTTGTGGGG 60.203 52.381 3.84 0.00 0.00 4.96
6960 9593 1.519408 CGTTAACTGACTTGTGGGGG 58.481 55.000 3.71 0.00 0.00 5.40
6961 9594 1.244816 GTTAACTGACTTGTGGGGGC 58.755 55.000 0.00 0.00 0.00 5.80
6962 9595 0.111639 TTAACTGACTTGTGGGGGCC 59.888 55.000 0.00 0.00 0.00 5.80
6963 9596 1.063070 TAACTGACTTGTGGGGGCCA 61.063 55.000 4.39 0.00 0.00 5.36
6972 9605 4.365111 TGGGGGCCACATGTCAGC 62.365 66.667 3.04 8.58 0.00 4.26
6977 9610 3.503363 GCCACATGTCAGCGCCTC 61.503 66.667 2.29 0.00 0.00 4.70
6978 9611 2.046988 CCACATGTCAGCGCCTCA 60.047 61.111 2.29 0.68 0.00 3.86
6979 9612 1.450848 CCACATGTCAGCGCCTCAT 60.451 57.895 2.29 3.51 0.00 2.90
6980 9613 1.434622 CCACATGTCAGCGCCTCATC 61.435 60.000 2.29 0.00 0.00 2.92
6981 9614 0.741927 CACATGTCAGCGCCTCATCA 60.742 55.000 2.29 0.00 0.00 3.07
6982 9615 0.036105 ACATGTCAGCGCCTCATCAA 60.036 50.000 2.29 0.00 0.00 2.57
6983 9616 1.306148 CATGTCAGCGCCTCATCAAT 58.694 50.000 2.29 0.00 0.00 2.57
6984 9617 2.158914 ACATGTCAGCGCCTCATCAATA 60.159 45.455 2.29 0.00 0.00 1.90
6985 9618 2.229675 TGTCAGCGCCTCATCAATAG 57.770 50.000 2.29 0.00 0.00 1.73
6986 9619 1.756538 TGTCAGCGCCTCATCAATAGA 59.243 47.619 2.29 0.00 0.00 1.98
6987 9620 2.366590 TGTCAGCGCCTCATCAATAGAT 59.633 45.455 2.29 0.00 33.87 1.98
6988 9621 3.181462 TGTCAGCGCCTCATCAATAGATT 60.181 43.478 2.29 0.00 30.20 2.40
6989 9622 3.812053 GTCAGCGCCTCATCAATAGATTT 59.188 43.478 2.29 0.00 30.20 2.17
6990 9623 4.274459 GTCAGCGCCTCATCAATAGATTTT 59.726 41.667 2.29 0.00 30.20 1.82
6991 9624 4.883585 TCAGCGCCTCATCAATAGATTTTT 59.116 37.500 2.29 0.00 30.20 1.94
7014 9647 9.930158 TTTTTACAGATTAGCCCCTACAAATAT 57.070 29.630 0.00 0.00 0.00 1.28
7015 9648 9.930158 TTTTACAGATTAGCCCCTACAAATATT 57.070 29.630 0.00 0.00 0.00 1.28
7016 9649 9.930158 TTTACAGATTAGCCCCTACAAATATTT 57.070 29.630 0.00 0.00 0.00 1.40
7017 9650 9.930158 TTACAGATTAGCCCCTACAAATATTTT 57.070 29.630 0.00 0.00 0.00 1.82
7018 9651 8.838649 ACAGATTAGCCCCTACAAATATTTTT 57.161 30.769 0.00 0.00 0.00 1.94
7019 9652 9.930158 ACAGATTAGCCCCTACAAATATTTTTA 57.070 29.630 0.00 0.00 0.00 1.52
7025 9658 8.786826 AGCCCCTACAAATATTTTTAAAAAGC 57.213 30.769 17.72 11.01 0.00 3.51
7026 9659 8.379331 AGCCCCTACAAATATTTTTAAAAAGCA 58.621 29.630 17.72 9.31 0.00 3.91
7027 9660 9.004717 GCCCCTACAAATATTTTTAAAAAGCAA 57.995 29.630 17.72 7.40 0.00 3.91
7033 9666 9.278978 ACAAATATTTTTAAAAAGCAATCGGGT 57.721 25.926 17.72 6.78 0.00 5.28
7034 9667 9.753669 CAAATATTTTTAAAAAGCAATCGGGTC 57.246 29.630 17.72 0.00 0.00 4.46
7035 9668 8.487313 AATATTTTTAAAAAGCAATCGGGTCC 57.513 30.769 17.72 0.00 0.00 4.46
7036 9669 3.945981 TTTAAAAAGCAATCGGGTCCC 57.054 42.857 0.00 0.00 0.00 4.46
7037 9670 2.891191 TAAAAAGCAATCGGGTCCCT 57.109 45.000 6.29 0.00 0.00 4.20
7038 9671 1.256812 AAAAAGCAATCGGGTCCCTG 58.743 50.000 6.29 0.00 0.00 4.45
7039 9672 0.611896 AAAAGCAATCGGGTCCCTGG 60.612 55.000 6.29 0.00 0.00 4.45
7040 9673 1.497309 AAAGCAATCGGGTCCCTGGA 61.497 55.000 6.29 0.00 0.00 3.86
7041 9674 1.497309 AAGCAATCGGGTCCCTGGAA 61.497 55.000 6.29 0.00 0.00 3.53
7042 9675 1.227383 GCAATCGGGTCCCTGGAAT 59.773 57.895 6.29 0.00 0.00 3.01
7043 9676 0.819666 GCAATCGGGTCCCTGGAATC 60.820 60.000 6.29 0.00 0.00 2.52
7044 9677 0.546122 CAATCGGGTCCCTGGAATCA 59.454 55.000 6.29 0.00 0.00 2.57
7045 9678 1.143684 CAATCGGGTCCCTGGAATCAT 59.856 52.381 6.29 0.00 0.00 2.45
7046 9679 1.522900 ATCGGGTCCCTGGAATCATT 58.477 50.000 6.29 0.00 0.00 2.57
7047 9680 1.295020 TCGGGTCCCTGGAATCATTT 58.705 50.000 6.29 0.00 0.00 2.32
7048 9681 2.483547 TCGGGTCCCTGGAATCATTTA 58.516 47.619 6.29 0.00 0.00 1.40
7049 9682 2.847449 TCGGGTCCCTGGAATCATTTAA 59.153 45.455 6.29 0.00 0.00 1.52
7050 9683 3.267291 TCGGGTCCCTGGAATCATTTAAA 59.733 43.478 6.29 0.00 0.00 1.52
7051 9684 4.020543 CGGGTCCCTGGAATCATTTAAAA 58.979 43.478 6.29 0.00 0.00 1.52
7052 9685 4.464597 CGGGTCCCTGGAATCATTTAAAAA 59.535 41.667 6.29 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 4.536364 ATTCATAACAAATGTCCGCGAG 57.464 40.909 8.23 0.00 0.00 5.03
81 83 8.397148 GTTTGTCAATTTCAAAAATGGTCACAT 58.603 29.630 7.01 0.00 36.71 3.21
121 123 8.589335 AGTCGCAAAAGATATAATATGTTCGT 57.411 30.769 0.00 0.00 0.00 3.85
160 166 8.802856 TGTTCACAAATTTCTAAAACATGTTCG 58.197 29.630 12.39 3.94 0.00 3.95
229 236 8.423349 TCATCAATTCAGAAAAAGTTCACCAAT 58.577 29.630 0.00 0.00 36.09 3.16
230 237 7.780064 TCATCAATTCAGAAAAAGTTCACCAA 58.220 30.769 0.00 0.00 36.09 3.67
231 238 7.345422 TCATCAATTCAGAAAAAGTTCACCA 57.655 32.000 0.00 0.00 36.09 4.17
233 240 6.919662 TGCTCATCAATTCAGAAAAAGTTCAC 59.080 34.615 0.00 0.00 36.09 3.18
234 241 7.041635 TGCTCATCAATTCAGAAAAAGTTCA 57.958 32.000 0.00 0.00 36.09 3.18
235 242 8.530269 AATGCTCATCAATTCAGAAAAAGTTC 57.470 30.769 0.00 0.00 0.00 3.01
250 257 5.641783 TGAATTTCGGAAAATGCTCATCA 57.358 34.783 7.33 1.94 35.27 3.07
252 259 6.211587 TCATGAATTTCGGAAAATGCTCAT 57.788 33.333 7.33 10.12 34.71 2.90
379 399 9.579768 CATTGGTAAAATGTTTCGGAAATCATA 57.420 29.630 6.43 0.00 0.00 2.15
404 424 7.812191 CCGGAATGTTTCAGAAAAATATGAACA 59.188 33.333 0.00 0.00 35.25 3.18
462 483 5.284079 GTGATGCATATTCTCCGCAAAAAT 58.716 37.500 0.00 0.00 39.48 1.82
531 553 6.238049 GCAGAACTGATGCTAAAGTGATGTAG 60.238 42.308 5.97 0.00 40.59 2.74
849 915 4.250305 GGGGGCGCACGGTATCAT 62.250 66.667 10.83 0.00 0.00 2.45
880 946 1.556911 GAGCAAGAGGATGAGGTGGAA 59.443 52.381 0.00 0.00 0.00 3.53
897 1206 5.189180 AGAGAAGAGAGAAGAGAGAAGAGC 58.811 45.833 0.00 0.00 0.00 4.09
909 1218 3.818210 GTGTGTGACAGAGAGAAGAGAGA 59.182 47.826 0.00 0.00 0.00 3.10
910 1219 3.057596 GGTGTGTGACAGAGAGAAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
911 1220 2.887783 GGTGTGTGACAGAGAGAAGAGA 59.112 50.000 0.00 0.00 0.00 3.10
912 1221 2.890311 AGGTGTGTGACAGAGAGAAGAG 59.110 50.000 0.00 0.00 0.00 2.85
913 1222 2.950781 AGGTGTGTGACAGAGAGAAGA 58.049 47.619 0.00 0.00 0.00 2.87
914 1223 3.068732 TGAAGGTGTGTGACAGAGAGAAG 59.931 47.826 0.00 0.00 0.00 2.85
915 1224 3.031013 TGAAGGTGTGTGACAGAGAGAA 58.969 45.455 0.00 0.00 0.00 2.87
1278 1593 0.955919 GGAACCACTTGAAGAGCGGG 60.956 60.000 0.00 0.00 31.51 6.13
1523 1840 7.890127 TGATTCTTCATTTGTCAGAAATACCCT 59.110 33.333 0.00 0.00 30.43 4.34
1549 1866 4.230745 ACTTTTGTACTGGTGTGGAAGT 57.769 40.909 0.00 0.00 0.00 3.01
1563 1880 8.541899 TTTTGGGAAGGAGTATAAACTTTTGT 57.458 30.769 0.00 0.00 35.56 2.83
1572 1889 8.282801 TGCCTTATATTTTGGGAAGGAGTATA 57.717 34.615 3.71 0.00 40.88 1.47
1573 1890 7.161715 TGCCTTATATTTTGGGAAGGAGTAT 57.838 36.000 3.71 0.00 40.88 2.12
1575 1892 5.466127 TGCCTTATATTTTGGGAAGGAGT 57.534 39.130 3.71 0.00 40.88 3.85
1578 1895 8.934023 TTAGTATGCCTTATATTTTGGGAAGG 57.066 34.615 0.00 0.00 41.26 3.46
1697 2015 7.767198 ACCAAAATCAATTGATCCATCATGAAC 59.233 33.333 20.95 0.00 36.56 3.18
1713 2031 6.284459 GTCCACAATACCAAACCAAAATCAA 58.716 36.000 0.00 0.00 0.00 2.57
1755 2074 8.749026 TTGTGTAAGGTTGACCAAGTTTATAA 57.251 30.769 2.56 0.00 38.89 0.98
1843 2168 3.136626 GTCATATTGGAAGGGGCTACACT 59.863 47.826 0.00 0.00 0.00 3.55
2083 2423 5.978814 TCACTCCTTGCTAGAAAATAGGAC 58.021 41.667 0.00 0.00 31.92 3.85
2097 2437 5.633830 AATTGTACAAGCATCACTCCTTG 57.366 39.130 14.65 0.00 43.05 3.61
2114 2454 2.967887 AGGCAGGAAGCTTTCAAATTGT 59.032 40.909 7.68 0.00 44.79 2.71
2178 2518 8.472007 AGAGAGGATTAATAGACGAACAAGAT 57.528 34.615 0.00 0.00 0.00 2.40
2572 2912 4.273148 AGTTAGCAAGACCGAAGTCAAT 57.727 40.909 0.00 0.00 46.15 2.57
2720 3060 3.795623 TGATTAGCTCCTCAACGGTAC 57.204 47.619 0.00 0.00 0.00 3.34
2730 3070 5.225642 GCCTTGCATTTTATGATTAGCTCC 58.774 41.667 0.00 0.00 0.00 4.70
2739 3079 3.441496 ACGATGGCCTTGCATTTTATG 57.559 42.857 3.32 0.00 0.00 1.90
2741 3081 3.879998 TCTACGATGGCCTTGCATTTTA 58.120 40.909 3.32 0.00 0.00 1.52
2754 3094 6.036408 TCTGTTCATTTTCAGCATCTACGATG 59.964 38.462 0.00 0.00 0.00 3.84
2986 3335 2.486727 GGAAAGACGAAAACCCCTGAGT 60.487 50.000 0.00 0.00 0.00 3.41
2994 3344 5.676331 GCCATCATAAGGGAAAGACGAAAAC 60.676 44.000 0.00 0.00 0.00 2.43
3000 3350 7.588497 AAATAAGCCATCATAAGGGAAAGAC 57.412 36.000 0.00 0.00 0.00 3.01
3065 3415 0.249155 GCATGATGGTTCAATGCCCG 60.249 55.000 0.00 0.00 34.96 6.13
3148 3498 0.599558 TGCTGCAGAATCAAACAGGC 59.400 50.000 20.43 0.00 0.00 4.85
3150 3500 8.589629 GTTAATAATTGCTGCAGAATCAAACAG 58.410 33.333 20.43 0.00 0.00 3.16
3174 3524 5.611374 ACGCTGCAATAGTAATAGGATGTT 58.389 37.500 0.00 0.00 0.00 2.71
3260 3610 5.123979 GTGGAGTCCTTGCAGTAAAATTAGG 59.876 44.000 11.33 0.00 0.00 2.69
3366 3722 5.046591 CCAAATAGGTCCTCTGTACTGTCAA 60.047 44.000 0.00 0.00 0.00 3.18
3385 3741 1.570347 TTTACGTCGCTGCGCCAAAT 61.570 50.000 18.65 3.34 34.88 2.32
3401 3757 9.480053 AAGTGCTAACGACTACAGTTAATTTTA 57.520 29.630 0.00 0.00 34.18 1.52
3507 3863 8.877195 ACTATTCTTTTACCAGGAAACAGTAGA 58.123 33.333 0.00 0.00 0.00 2.59
3547 3903 6.228995 TGTCAACACCACGGTATTTTATACA 58.771 36.000 0.00 0.00 0.00 2.29
3623 3979 7.172019 ACTGTGTTCGAAATAGGATTTTACGTT 59.828 33.333 0.00 0.00 0.00 3.99
3669 4028 3.431055 CCAAAACGGCACAGCTGA 58.569 55.556 23.35 0.00 38.46 4.26
3694 4053 8.900983 AAACATACAAAACAAATAGCCAACAT 57.099 26.923 0.00 0.00 0.00 2.71
3699 4058 9.855021 ATAGTGAAACATACAAAACAAATAGCC 57.145 29.630 0.00 0.00 41.43 3.93
3757 4116 7.978975 ACAAAGAAAGCATGTTAGTTAAAGCAA 59.021 29.630 0.00 0.00 0.00 3.91
3852 4211 2.417924 CCATGTCAGTACAGAGCCTGTC 60.418 54.545 10.60 4.57 41.21 3.51
3858 4217 8.855110 AGATAAATAGTCCATGTCAGTACAGAG 58.145 37.037 0.00 0.00 39.49 3.35
3908 4267 6.469782 ACTTGATATAACATTTGGCCAAGG 57.530 37.500 19.48 17.15 35.42 3.61
4035 4394 5.010933 AGAACACGATCTACCTCTTCTTGA 58.989 41.667 0.00 0.00 0.00 3.02
4178 4537 6.281405 AGTAACCAACACTAACTCTGAAGTG 58.719 40.000 6.46 6.46 46.84 3.16
4505 4867 9.490379 ACATACATAAGCTATTTAACTGGTAGC 57.510 33.333 0.00 0.00 40.79 3.58
4676 5039 3.057526 CCGAGGATGACGATATGCAGTAA 60.058 47.826 0.00 0.00 0.00 2.24
4905 5268 7.665561 AATAATGTAACCATTTTGCAACACC 57.334 32.000 0.00 0.00 41.50 4.16
4944 5308 1.413118 AACCTGGCAAAAAGAGGTGG 58.587 50.000 0.00 0.00 39.28 4.61
4982 5346 2.778299 TCTCCAACACATTTTCGAGGG 58.222 47.619 0.00 0.00 0.00 4.30
5156 5520 1.460504 AGCAACCTGATCATGCACAG 58.539 50.000 19.19 10.56 42.45 3.66
5196 5560 7.437267 GTGAGTGCTACAGTGTTTTAGAGTTTA 59.563 37.037 0.00 0.00 0.00 2.01
5202 5566 3.428870 CCGTGAGTGCTACAGTGTTTTAG 59.571 47.826 0.00 0.00 0.00 1.85
5215 5579 1.536284 GCATAGTCTACCCGTGAGTGC 60.536 57.143 0.00 0.00 0.00 4.40
5217 5581 2.139323 TGCATAGTCTACCCGTGAGT 57.861 50.000 0.00 0.00 0.00 3.41
5226 5590 8.391699 ACCTACTATGGTATCTTGCATAGTCTA 58.608 37.037 0.11 0.00 40.22 2.59
5240 5604 9.154632 ACATGAACATAATCACCTACTATGGTA 57.845 33.333 0.00 0.00 38.45 3.25
5277 5641 1.255667 TGGAGAGGTACCGAACAGGC 61.256 60.000 6.18 0.00 46.52 4.85
5279 5643 1.546961 ACTGGAGAGGTACCGAACAG 58.453 55.000 20.16 20.16 0.00 3.16
5280 5644 2.005370 AACTGGAGAGGTACCGAACA 57.995 50.000 6.18 3.95 0.00 3.18
5281 5645 2.298163 TGAAACTGGAGAGGTACCGAAC 59.702 50.000 6.18 2.43 0.00 3.95
5282 5646 2.600790 TGAAACTGGAGAGGTACCGAA 58.399 47.619 6.18 0.00 0.00 4.30
5283 5647 2.297698 TGAAACTGGAGAGGTACCGA 57.702 50.000 6.18 0.00 0.00 4.69
5284 5648 3.396260 TTTGAAACTGGAGAGGTACCG 57.604 47.619 6.18 0.00 0.00 4.02
5285 5649 4.715713 AGTTTTGAAACTGGAGAGGTACC 58.284 43.478 2.73 2.73 46.80 3.34
5297 5661 0.942252 ACGGAGCGGAGTTTTGAAAC 59.058 50.000 0.00 0.00 39.17 2.78
5298 5662 0.941542 CACGGAGCGGAGTTTTGAAA 59.058 50.000 0.00 0.00 0.00 2.69
5299 5663 1.503818 GCACGGAGCGGAGTTTTGAA 61.504 55.000 0.00 0.00 0.00 2.69
5300 5664 1.959226 GCACGGAGCGGAGTTTTGA 60.959 57.895 0.00 0.00 0.00 2.69
5301 5665 2.556287 GCACGGAGCGGAGTTTTG 59.444 61.111 0.00 0.00 0.00 2.44
5314 5678 4.803426 GACCCAGCTCCTCGCACG 62.803 72.222 0.00 0.00 42.61 5.34
5315 5679 3.386237 AGACCCAGCTCCTCGCAC 61.386 66.667 0.00 0.00 42.61 5.34
5316 5680 3.385384 CAGACCCAGCTCCTCGCA 61.385 66.667 0.00 0.00 42.61 5.10
5317 5681 3.071206 TCAGACCCAGCTCCTCGC 61.071 66.667 0.00 0.00 39.57 5.03
5318 5682 3.074999 GCTCAGACCCAGCTCCTCG 62.075 68.421 0.00 0.00 33.75 4.63
5319 5683 2.730524 GGCTCAGACCCAGCTCCTC 61.731 68.421 0.00 0.00 37.05 3.71
5320 5684 2.686835 GGCTCAGACCCAGCTCCT 60.687 66.667 0.00 0.00 37.05 3.69
5321 5685 4.154347 CGGCTCAGACCCAGCTCC 62.154 72.222 0.00 0.00 37.05 4.70
5322 5686 4.828925 GCGGCTCAGACCCAGCTC 62.829 72.222 0.00 0.00 37.05 4.09
5324 5688 4.828925 GAGCGGCTCAGACCCAGC 62.829 72.222 24.42 0.00 36.02 4.85
5325 5689 3.073735 AGAGCGGCTCAGACCCAG 61.074 66.667 29.88 0.00 32.06 4.45
5326 5690 3.385384 CAGAGCGGCTCAGACCCA 61.385 66.667 29.88 0.00 32.06 4.51
5327 5691 3.386237 ACAGAGCGGCTCAGACCC 61.386 66.667 29.88 4.34 32.06 4.46
5328 5692 2.125753 CACAGAGCGGCTCAGACC 60.126 66.667 29.88 5.11 32.06 3.85
5329 5693 2.813042 GCACAGAGCGGCTCAGAC 60.813 66.667 29.88 16.38 32.06 3.51
5369 5733 2.435586 CAGCTGCAACTCCCGGAG 60.436 66.667 13.31 13.31 35.52 4.63
5370 5734 4.020617 CCAGCTGCAACTCCCGGA 62.021 66.667 8.66 0.00 0.00 5.14
5371 5735 3.965539 CTCCAGCTGCAACTCCCGG 62.966 68.421 8.66 0.00 0.00 5.73
5372 5736 2.435586 CTCCAGCTGCAACTCCCG 60.436 66.667 8.66 0.00 0.00 5.14
5373 5737 2.749441 GCTCCAGCTGCAACTCCC 60.749 66.667 8.66 0.00 38.21 4.30
5374 5738 3.123620 CGCTCCAGCTGCAACTCC 61.124 66.667 8.66 0.00 39.32 3.85
5375 5739 3.123620 CCGCTCCAGCTGCAACTC 61.124 66.667 8.66 0.00 39.32 3.01
5376 5740 3.602513 CTCCGCTCCAGCTGCAACT 62.603 63.158 8.66 0.00 39.32 3.16
5377 5741 3.123620 CTCCGCTCCAGCTGCAAC 61.124 66.667 8.66 0.00 39.32 4.17
5378 5742 3.630013 ACTCCGCTCCAGCTGCAA 61.630 61.111 8.66 0.00 39.32 4.08
5379 5743 4.383861 CACTCCGCTCCAGCTGCA 62.384 66.667 8.66 0.00 39.32 4.41
5381 5745 2.641439 GATCCACTCCGCTCCAGCTG 62.641 65.000 6.78 6.78 39.32 4.24
5382 5746 2.364842 ATCCACTCCGCTCCAGCT 60.365 61.111 0.00 0.00 39.32 4.24
5383 5747 2.107953 GATCCACTCCGCTCCAGC 59.892 66.667 0.00 0.00 37.78 4.85
5384 5748 2.818132 GGATCCACTCCGCTCCAG 59.182 66.667 6.95 0.00 33.29 3.86
5391 5755 1.522569 CCCTGTTCGGATCCACTCC 59.477 63.158 13.41 0.00 41.07 3.85
5392 5756 1.153349 GCCCTGTTCGGATCCACTC 60.153 63.158 13.41 1.28 33.16 3.51
5393 5757 1.201429 AAGCCCTGTTCGGATCCACT 61.201 55.000 13.41 0.00 33.16 4.00
5394 5758 0.322546 AAAGCCCTGTTCGGATCCAC 60.323 55.000 13.41 3.70 33.16 4.02
5395 5759 1.281419 TAAAGCCCTGTTCGGATCCA 58.719 50.000 13.41 0.00 33.16 3.41
5396 5760 2.640316 ATAAAGCCCTGTTCGGATCC 57.360 50.000 0.00 0.00 33.16 3.36
5397 5761 6.935208 ACTTATAATAAAGCCCTGTTCGGATC 59.065 38.462 0.00 0.00 33.16 3.36
5398 5762 6.838382 ACTTATAATAAAGCCCTGTTCGGAT 58.162 36.000 0.00 0.00 33.16 4.18
5399 5763 6.243216 ACTTATAATAAAGCCCTGTTCGGA 57.757 37.500 0.00 0.00 33.16 4.55
5400 5764 6.937436 AACTTATAATAAAGCCCTGTTCGG 57.063 37.500 0.00 0.00 0.00 4.30
5401 5765 7.758495 ACAAACTTATAATAAAGCCCTGTTCG 58.242 34.615 0.00 0.00 0.00 3.95
5402 5766 9.923143 AAACAAACTTATAATAAAGCCCTGTTC 57.077 29.630 0.00 0.00 30.65 3.18
5418 5782 9.555727 AGCTTACAACTGATCTAAACAAACTTA 57.444 29.630 0.00 0.00 0.00 2.24
5419 5783 8.451908 AGCTTACAACTGATCTAAACAAACTT 57.548 30.769 0.00 0.00 0.00 2.66
5450 5814 1.064758 TGATGGTGGGACAGGCATAAC 60.065 52.381 0.00 0.00 41.80 1.89
5493 5857 8.288217 TCCGCATTTCATTTAGTGTTTAAAAC 57.712 30.769 0.00 0.00 0.00 2.43
5496 5860 8.138712 ACTTTCCGCATTTCATTTAGTGTTTAA 58.861 29.630 0.00 0.00 0.00 1.52
5501 5865 4.324402 GCACTTTCCGCATTTCATTTAGTG 59.676 41.667 0.00 0.00 34.97 2.74
5514 5878 2.053627 CAATTTCACTGCACTTTCCGC 58.946 47.619 0.00 0.00 0.00 5.54
5523 5887 3.120442 GCTCCAAATTGCAATTTCACTGC 60.120 43.478 29.92 25.02 36.52 4.40
5524 5888 4.312443 AGCTCCAAATTGCAATTTCACTG 58.688 39.130 29.92 20.81 36.52 3.66
5539 5903 3.497942 GGGAAAGGTGACTAAAGCTCCAA 60.498 47.826 0.00 0.00 42.68 3.53
5542 5906 3.008049 TCAGGGAAAGGTGACTAAAGCTC 59.992 47.826 0.00 0.00 42.68 4.09
5545 5909 4.351874 TGTCAGGGAAAGGTGACTAAAG 57.648 45.455 4.27 0.00 43.03 1.85
5556 5920 6.448369 TTATCCTTCTCTTTGTCAGGGAAA 57.552 37.500 0.00 0.00 41.85 3.13
5557 5921 6.448369 TTTATCCTTCTCTTTGTCAGGGAA 57.552 37.500 0.00 0.00 39.99 3.97
5559 5923 5.124617 GCTTTTATCCTTCTCTTTGTCAGGG 59.875 44.000 0.00 0.00 0.00 4.45
5560 5924 5.707298 TGCTTTTATCCTTCTCTTTGTCAGG 59.293 40.000 0.00 0.00 0.00 3.86
5564 5928 7.173390 GTGTAGTGCTTTTATCCTTCTCTTTGT 59.827 37.037 0.00 0.00 0.00 2.83
5565 5929 7.522374 GTGTAGTGCTTTTATCCTTCTCTTTG 58.478 38.462 0.00 0.00 0.00 2.77
5566 5930 6.369065 CGTGTAGTGCTTTTATCCTTCTCTTT 59.631 38.462 0.00 0.00 0.00 2.52
5567 5931 5.869888 CGTGTAGTGCTTTTATCCTTCTCTT 59.130 40.000 0.00 0.00 0.00 2.85
5570 5934 5.148651 ACGTGTAGTGCTTTTATCCTTCT 57.851 39.130 0.00 0.00 0.00 2.85
5571 5935 5.857822 AACGTGTAGTGCTTTTATCCTTC 57.142 39.130 0.00 0.00 0.00 3.46
5572 5936 5.107220 CGAAACGTGTAGTGCTTTTATCCTT 60.107 40.000 0.00 0.00 0.00 3.36
5573 5937 4.387862 CGAAACGTGTAGTGCTTTTATCCT 59.612 41.667 0.00 0.00 0.00 3.24
5575 5939 5.505165 TCGAAACGTGTAGTGCTTTTATC 57.495 39.130 0.00 0.00 0.00 1.75
5577 5941 5.715429 TTTCGAAACGTGTAGTGCTTTTA 57.285 34.783 6.47 0.00 0.00 1.52
5578 5942 4.603231 TTTCGAAACGTGTAGTGCTTTT 57.397 36.364 6.47 0.00 0.00 2.27
5579 5943 4.271533 TGATTTCGAAACGTGTAGTGCTTT 59.728 37.500 13.81 0.00 0.00 3.51
5580 5944 3.805422 TGATTTCGAAACGTGTAGTGCTT 59.195 39.130 13.81 0.00 0.00 3.91
5587 5983 2.734670 TCGAGTGATTTCGAAACGTGT 58.265 42.857 13.81 0.00 45.69 4.49
5596 5992 6.535508 AGCTATGGTTTTAGTCGAGTGATTTC 59.464 38.462 2.10 0.00 0.00 2.17
5597 5993 6.313905 CAGCTATGGTTTTAGTCGAGTGATTT 59.686 38.462 2.10 0.00 0.00 2.17
5600 5996 4.744570 CAGCTATGGTTTTAGTCGAGTGA 58.255 43.478 2.10 0.00 0.00 3.41
5615 6011 3.634448 ACTACAGGTCTACAGCAGCTATG 59.366 47.826 0.00 0.00 0.00 2.23
5629 6025 0.465705 CGGCATGGATGACTACAGGT 59.534 55.000 0.00 0.00 32.20 4.00
5635 6031 0.615331 ACAAGACGGCATGGATGACT 59.385 50.000 0.00 0.00 32.20 3.41
5646 6042 4.094887 CCCATTCAAGTAATCACAAGACGG 59.905 45.833 0.00 0.00 0.00 4.79
5647 6043 4.695455 ACCCATTCAAGTAATCACAAGACG 59.305 41.667 0.00 0.00 0.00 4.18
5649 6045 6.414732 CCTACCCATTCAAGTAATCACAAGA 58.585 40.000 0.00 0.00 0.00 3.02
5650 6046 5.066505 GCCTACCCATTCAAGTAATCACAAG 59.933 44.000 0.00 0.00 0.00 3.16
5651 6047 4.947388 GCCTACCCATTCAAGTAATCACAA 59.053 41.667 0.00 0.00 0.00 3.33
5673 6070 3.312421 TCTTTTTAGTATCAGCGCCATGC 59.688 43.478 2.29 0.00 46.98 4.06
5676 6073 4.201910 GCATTCTTTTTAGTATCAGCGCCA 60.202 41.667 2.29 0.00 0.00 5.69
5679 6076 5.065218 ACCTGCATTCTTTTTAGTATCAGCG 59.935 40.000 0.00 0.00 0.00 5.18
5694 6091 5.957798 TCAATTGATTTGAGACCTGCATTC 58.042 37.500 3.38 0.00 39.44 2.67
5730 6127 4.569162 TGTAACACAGTGAAAGGAACGAAG 59.431 41.667 7.81 0.00 0.00 3.79
5734 6131 5.123344 ACAAGTGTAACACAGTGAAAGGAAC 59.877 40.000 7.81 0.00 41.43 3.62
5741 6138 6.404184 CCAAAATCACAAGTGTAACACAGTGA 60.404 38.462 16.93 16.93 46.70 3.41
5743 6140 5.163561 CCCAAAATCACAAGTGTAACACAGT 60.164 40.000 0.00 0.00 41.43 3.55
5746 6143 5.067283 AGACCCAAAATCACAAGTGTAACAC 59.933 40.000 0.00 0.00 41.43 3.32
5749 6146 7.883391 TTTAGACCCAAAATCACAAGTGTAA 57.117 32.000 0.00 0.00 0.00 2.41
5757 6154 6.981722 AGTGTCATTTTAGACCCAAAATCAC 58.018 36.000 0.00 0.00 36.26 3.06
5758 6155 6.775142 TGAGTGTCATTTTAGACCCAAAATCA 59.225 34.615 0.00 0.00 36.26 2.57
5759 6156 7.214467 TGAGTGTCATTTTAGACCCAAAATC 57.786 36.000 0.00 0.00 36.26 2.17
5760 6157 7.069331 TGTTGAGTGTCATTTTAGACCCAAAAT 59.931 33.333 0.00 0.00 38.37 1.82
5764 6161 5.042463 TGTTGAGTGTCATTTTAGACCCA 57.958 39.130 0.00 0.00 37.73 4.51
5776 6173 7.095060 TGCAGAAGAGAATATTTGTTGAGTGTC 60.095 37.037 0.00 0.00 0.00 3.67
5782 6179 5.649395 TCCCTGCAGAAGAGAATATTTGTTG 59.351 40.000 17.39 0.00 0.00 3.33
5799 6196 7.517320 ACTTACATTCATATACAATCCCTGCA 58.483 34.615 0.00 0.00 0.00 4.41
5800 6197 7.880195 AGACTTACATTCATATACAATCCCTGC 59.120 37.037 0.00 0.00 0.00 4.85
5807 6204 9.589111 TTTACGCAGACTTACATTCATATACAA 57.411 29.630 0.00 0.00 0.00 2.41
5903 6300 9.767228 TGTAGTTTTGTAACATCTGTTAGCTTA 57.233 29.630 3.08 0.00 40.74 3.09
5904 6301 8.671384 TGTAGTTTTGTAACATCTGTTAGCTT 57.329 30.769 3.08 0.00 40.74 3.74
5905 6302 8.148351 TCTGTAGTTTTGTAACATCTGTTAGCT 58.852 33.333 3.08 0.00 40.74 3.32
5906 6303 8.306680 TCTGTAGTTTTGTAACATCTGTTAGC 57.693 34.615 3.08 0.81 40.74 3.09
5909 6306 8.076178 GCAATCTGTAGTTTTGTAACATCTGTT 58.924 33.333 0.69 0.69 41.73 3.16
5910 6307 7.308589 GGCAATCTGTAGTTTTGTAACATCTGT 60.309 37.037 0.00 0.00 36.70 3.41
5911 6308 7.023575 GGCAATCTGTAGTTTTGTAACATCTG 58.976 38.462 0.00 0.00 36.70 2.90
5912 6309 6.714810 TGGCAATCTGTAGTTTTGTAACATCT 59.285 34.615 0.00 0.00 36.70 2.90
5913 6310 6.908825 TGGCAATCTGTAGTTTTGTAACATC 58.091 36.000 0.00 0.00 36.70 3.06
5922 6319 4.762251 GGTCTTCTTGGCAATCTGTAGTTT 59.238 41.667 0.00 0.00 0.00 2.66
5934 6331 2.829120 ACTAGTGAGAGGTCTTCTTGGC 59.171 50.000 0.00 0.00 35.87 4.52
5942 6339 6.366604 GCACTAAAGAAAACTAGTGAGAGGTC 59.633 42.308 12.26 0.00 45.21 3.85
5950 6347 5.235831 GTCAACGGCACTAAAGAAAACTAGT 59.764 40.000 0.00 0.00 0.00 2.57
5952 6349 5.117584 TGTCAACGGCACTAAAGAAAACTA 58.882 37.500 0.00 0.00 0.00 2.24
5957 6354 5.277825 CAAAATGTCAACGGCACTAAAGAA 58.722 37.500 0.00 0.00 0.00 2.52
5958 6355 4.261405 CCAAAATGTCAACGGCACTAAAGA 60.261 41.667 0.00 0.00 0.00 2.52
5959 6356 3.980775 CCAAAATGTCAACGGCACTAAAG 59.019 43.478 0.00 0.00 0.00 1.85
5960 6357 3.797184 GCCAAAATGTCAACGGCACTAAA 60.797 43.478 0.00 0.00 42.50 1.85
5961 6358 2.287909 GCCAAAATGTCAACGGCACTAA 60.288 45.455 0.00 0.00 42.50 2.24
5962 6359 1.268352 GCCAAAATGTCAACGGCACTA 59.732 47.619 0.00 0.00 42.50 2.74
5963 6360 0.031994 GCCAAAATGTCAACGGCACT 59.968 50.000 0.00 0.00 42.50 4.40
5964 6361 2.516486 GCCAAAATGTCAACGGCAC 58.484 52.632 0.00 0.00 42.50 5.01
5966 6363 0.313672 TCTGCCAAAATGTCAACGGC 59.686 50.000 0.00 0.00 43.28 5.68
5967 6364 2.791383 TTCTGCCAAAATGTCAACGG 57.209 45.000 0.00 0.00 0.00 4.44
5968 6365 3.899734 TCATTCTGCCAAAATGTCAACG 58.100 40.909 0.00 0.00 35.92 4.10
5969 6366 4.866486 GGATCATTCTGCCAAAATGTCAAC 59.134 41.667 0.00 0.00 35.92 3.18
5970 6367 4.527427 TGGATCATTCTGCCAAAATGTCAA 59.473 37.500 0.00 0.00 35.92 3.18
5971 6368 4.087907 TGGATCATTCTGCCAAAATGTCA 58.912 39.130 0.00 0.00 35.92 3.58
5972 6369 4.724074 TGGATCATTCTGCCAAAATGTC 57.276 40.909 0.00 0.00 35.92 3.06
5973 6370 4.283978 TGTTGGATCATTCTGCCAAAATGT 59.716 37.500 0.00 0.00 42.77 2.71
5976 6373 6.575267 CATATGTTGGATCATTCTGCCAAAA 58.425 36.000 0.00 0.00 42.77 2.44
5980 6377 3.570975 TGCATATGTTGGATCATTCTGCC 59.429 43.478 4.29 0.00 35.93 4.85
5981 6378 4.841443 TGCATATGTTGGATCATTCTGC 57.159 40.909 4.29 0.00 36.60 4.26
6024 6421 3.005261 CACGAGAGGAGTGGATAATCAGG 59.995 52.174 0.00 0.00 36.06 3.86
6034 6435 1.214062 GGACTGCACGAGAGGAGTG 59.786 63.158 6.23 0.00 40.47 3.51
6069 6470 2.687935 GTCTCACCCTGTTTTGCTTTGA 59.312 45.455 0.00 0.00 0.00 2.69
6087 6488 1.134965 GTTGCCGATGACTGCTAGTCT 60.135 52.381 14.60 3.99 45.27 3.24
6090 6491 1.134995 TCTGTTGCCGATGACTGCTAG 60.135 52.381 0.00 0.00 0.00 3.42
6094 6495 2.485426 ACAATTCTGTTGCCGATGACTG 59.515 45.455 0.00 0.00 28.57 3.51
6096 6497 2.483877 TGACAATTCTGTTGCCGATGAC 59.516 45.455 0.00 0.00 35.30 3.06
6097 6498 2.777094 TGACAATTCTGTTGCCGATGA 58.223 42.857 0.00 0.00 35.30 2.92
6098 6499 3.557577 TTGACAATTCTGTTGCCGATG 57.442 42.857 0.00 0.00 35.30 3.84
6099 6500 4.201812 CGTATTGACAATTCTGTTGCCGAT 60.202 41.667 5.89 0.00 35.30 4.18
6100 6501 3.124466 CGTATTGACAATTCTGTTGCCGA 59.876 43.478 5.89 0.00 35.30 5.54
6101 6502 3.120338 ACGTATTGACAATTCTGTTGCCG 60.120 43.478 5.89 0.14 35.30 5.69
6161 6564 6.424812 GGTCAAAATTTCTGGACAAGGAAATG 59.575 38.462 15.28 0.00 40.58 2.32
6198 6601 4.335416 TGCTGAAAAGATACAAGAAGGGG 58.665 43.478 0.00 0.00 0.00 4.79
6275 6678 3.885484 ACTGTCAAAATCAGCAAGTCG 57.115 42.857 0.00 0.00 36.50 4.18
6303 6706 5.958955 ACAGACAAGGTACTACCGATTTAC 58.041 41.667 0.00 0.00 44.90 2.01
6304 6707 6.594788 AACAGACAAGGTACTACCGATTTA 57.405 37.500 0.00 0.00 44.90 1.40
6305 6708 5.479124 AACAGACAAGGTACTACCGATTT 57.521 39.130 0.00 0.00 44.90 2.17
6391 9023 2.541556 GAGCACTAATGGACCTTCGAC 58.458 52.381 0.00 0.00 0.00 4.20
6393 9025 1.560923 CGAGCACTAATGGACCTTCG 58.439 55.000 0.00 0.00 0.00 3.79
6430 9062 2.381725 GCCTCGGCAGGGTATATTAC 57.618 55.000 2.41 0.00 40.75 1.89
6446 9078 2.102925 GCTCTTGAGATGCTCTAAGCCT 59.897 50.000 1.30 0.00 41.51 4.58
6452 9084 1.570803 ACCTGCTCTTGAGATGCTCT 58.429 50.000 1.30 0.00 0.00 4.09
6454 9086 1.484240 GGTACCTGCTCTTGAGATGCT 59.516 52.381 4.06 0.00 0.00 3.79
6465 9097 2.171003 GGCTCAAATTTGGTACCTGCT 58.829 47.619 17.90 0.00 0.00 4.24
6467 9099 2.755103 GGAGGCTCAAATTTGGTACCTG 59.245 50.000 23.58 2.29 0.00 4.00
6473 9105 4.276058 ACAAATGGAGGCTCAAATTTGG 57.724 40.909 34.24 24.56 41.93 3.28
6475 9107 5.070847 ACAGAACAAATGGAGGCTCAAATTT 59.929 36.000 17.69 17.32 0.00 1.82
6497 9129 2.550855 GGATCAAGCTCTGTTGTCCACA 60.551 50.000 0.00 0.00 32.37 4.17
6523 9155 2.676121 CATTGCCAGGGCGGACAA 60.676 61.111 5.74 0.00 45.51 3.18
6541 9173 4.777854 AAGGGGAAATGGGGGCGC 62.778 66.667 0.00 0.00 0.00 6.53
6552 9184 2.642311 TGTGCTACATTTGAGAAGGGGA 59.358 45.455 0.00 0.00 0.00 4.81
6566 9199 6.917477 TGAACTGTTGAATTGATTTGTGCTAC 59.083 34.615 0.00 0.00 0.00 3.58
6569 9202 6.586868 TTGAACTGTTGAATTGATTTGTGC 57.413 33.333 0.00 0.00 0.00 4.57
6593 9226 4.067192 CGTCATGGATCATATTGGCTTGA 58.933 43.478 0.00 0.00 0.00 3.02
6599 9232 8.446273 GGAACTTATTCGTCATGGATCATATTG 58.554 37.037 0.00 0.00 35.48 1.90
6603 9236 5.928976 TGGAACTTATTCGTCATGGATCAT 58.071 37.500 0.00 0.00 35.48 2.45
6655 9288 8.024285 ACACACGTAAAAGAAAAACTTGATTCA 58.976 29.630 0.00 0.00 38.98 2.57
6659 9292 6.016718 CGACACACGTAAAAGAAAAACTTGA 58.983 36.000 0.00 0.00 36.74 3.02
6668 9301 4.233123 AGACATCGACACACGTAAAAGA 57.767 40.909 0.00 0.00 43.13 2.52
6669 9302 4.966850 AAGACATCGACACACGTAAAAG 57.033 40.909 0.00 0.00 43.13 2.27
6682 9315 1.260297 TCAACGCACACAAAGACATCG 59.740 47.619 0.00 0.00 0.00 3.84
6697 9330 1.204704 TGTCAGAGTGGGCTATCAACG 59.795 52.381 0.00 0.00 0.00 4.10
6704 9337 1.001641 GCCAATGTCAGAGTGGGCT 60.002 57.895 0.00 0.00 40.42 5.19
6738 9371 7.924947 AGTAGTTTTATGCTATTTACTCCCGAC 59.075 37.037 0.00 0.00 0.00 4.79
6739 9372 8.015185 AGTAGTTTTATGCTATTTACTCCCGA 57.985 34.615 0.00 0.00 0.00 5.14
6740 9373 9.189723 GTAGTAGTTTTATGCTATTTACTCCCG 57.810 37.037 0.00 0.00 0.00 5.14
6749 9382 9.543783 GCCTGTAAAGTAGTAGTTTTATGCTAT 57.456 33.333 8.25 0.00 0.00 2.97
6750 9383 8.755977 AGCCTGTAAAGTAGTAGTTTTATGCTA 58.244 33.333 8.25 0.00 0.00 3.49
6751 9384 7.621796 AGCCTGTAAAGTAGTAGTTTTATGCT 58.378 34.615 8.25 8.97 0.00 3.79
6752 9385 7.845066 AGCCTGTAAAGTAGTAGTTTTATGC 57.155 36.000 8.25 7.22 0.00 3.14
6755 9388 9.039165 ACCATAGCCTGTAAAGTAGTAGTTTTA 57.961 33.333 8.25 0.00 0.00 1.52
6756 9389 7.914859 ACCATAGCCTGTAAAGTAGTAGTTTT 58.085 34.615 8.25 0.00 0.00 2.43
6757 9390 7.492077 ACCATAGCCTGTAAAGTAGTAGTTT 57.508 36.000 8.04 8.04 0.00 2.66
6758 9391 7.492077 AACCATAGCCTGTAAAGTAGTAGTT 57.508 36.000 0.00 0.00 0.00 2.24
6759 9392 7.179694 TGAAACCATAGCCTGTAAAGTAGTAGT 59.820 37.037 0.00 0.00 0.00 2.73
6760 9393 7.553334 TGAAACCATAGCCTGTAAAGTAGTAG 58.447 38.462 0.00 0.00 0.00 2.57
6761 9394 7.484993 TGAAACCATAGCCTGTAAAGTAGTA 57.515 36.000 0.00 0.00 0.00 1.82
6762 9395 6.368779 TGAAACCATAGCCTGTAAAGTAGT 57.631 37.500 0.00 0.00 0.00 2.73
6763 9396 7.681939 TTTGAAACCATAGCCTGTAAAGTAG 57.318 36.000 0.00 0.00 0.00 2.57
6764 9397 8.466617 TTTTTGAAACCATAGCCTGTAAAGTA 57.533 30.769 0.00 0.00 0.00 2.24
6765 9398 6.969993 TTTTGAAACCATAGCCTGTAAAGT 57.030 33.333 0.00 0.00 0.00 2.66
6805 9438 9.793259 ATTGACTTGGTAGTTATCTGAGAAAAA 57.207 29.630 0.00 0.00 33.84 1.94
6806 9439 9.219603 CATTGACTTGGTAGTTATCTGAGAAAA 57.780 33.333 0.00 0.00 33.84 2.29
6807 9440 7.824289 CCATTGACTTGGTAGTTATCTGAGAAA 59.176 37.037 0.00 0.00 33.84 2.52
6808 9441 7.331026 CCATTGACTTGGTAGTTATCTGAGAA 58.669 38.462 0.00 0.00 33.84 2.87
6809 9442 6.878317 CCATTGACTTGGTAGTTATCTGAGA 58.122 40.000 0.00 0.00 33.84 3.27
6822 9455 1.331214 ACAGCCAACCATTGACTTGG 58.669 50.000 8.13 8.13 42.82 3.61
6823 9456 3.181477 TGAAACAGCCAACCATTGACTTG 60.181 43.478 0.00 0.00 0.00 3.16
6824 9457 3.030291 TGAAACAGCCAACCATTGACTT 58.970 40.909 0.00 0.00 0.00 3.01
6825 9458 2.665165 TGAAACAGCCAACCATTGACT 58.335 42.857 0.00 0.00 0.00 3.41
6826 9459 3.451141 TTGAAACAGCCAACCATTGAC 57.549 42.857 0.00 0.00 0.00 3.18
6827 9460 4.478206 TTTTGAAACAGCCAACCATTGA 57.522 36.364 0.00 0.00 0.00 2.57
6846 9479 9.521841 TTTTAACAAAGAGAATTTGGGGTTTTT 57.478 25.926 5.43 0.00 33.92 1.94
6847 9480 9.521841 TTTTTAACAAAGAGAATTTGGGGTTTT 57.478 25.926 5.43 0.00 33.92 2.43
6870 9503 9.198837 GACCCGTCATAAACATGTTTAATTTTT 57.801 29.630 29.44 13.88 38.38 1.94
6871 9504 7.539366 CGACCCGTCATAAACATGTTTAATTTT 59.461 33.333 29.44 14.22 38.38 1.82
6872 9505 7.024768 CGACCCGTCATAAACATGTTTAATTT 58.975 34.615 29.44 14.54 38.38 1.82
6873 9506 6.403855 CCGACCCGTCATAAACATGTTTAATT 60.404 38.462 29.44 15.20 38.38 1.40
6874 9507 5.065474 CCGACCCGTCATAAACATGTTTAAT 59.935 40.000 29.44 17.44 38.38 1.40
6875 9508 4.392445 CCGACCCGTCATAAACATGTTTAA 59.608 41.667 29.44 15.20 38.38 1.52
6876 9509 3.933955 CCGACCCGTCATAAACATGTTTA 59.066 43.478 28.30 28.30 39.12 2.01
6877 9510 2.745281 CCGACCCGTCATAAACATGTTT 59.255 45.455 25.99 25.99 36.63 2.83
6878 9511 2.027929 TCCGACCCGTCATAAACATGTT 60.028 45.455 4.92 4.92 0.00 2.71
6879 9512 1.551430 TCCGACCCGTCATAAACATGT 59.449 47.619 0.00 0.00 0.00 3.21
6880 9513 1.931172 GTCCGACCCGTCATAAACATG 59.069 52.381 0.00 0.00 0.00 3.21
6881 9514 1.134610 GGTCCGACCCGTCATAAACAT 60.135 52.381 6.25 0.00 30.04 2.71
6882 9515 0.247185 GGTCCGACCCGTCATAAACA 59.753 55.000 6.25 0.00 30.04 2.83
6883 9516 3.055144 GGTCCGACCCGTCATAAAC 57.945 57.895 6.25 0.00 30.04 2.01
6897 9530 3.122971 GTGTTTAGCGGCGGGTCC 61.123 66.667 9.78 0.00 0.00 4.46
6898 9531 2.357760 TGTGTTTAGCGGCGGGTC 60.358 61.111 9.78 0.00 0.00 4.46
6899 9532 2.667199 GTGTGTTTAGCGGCGGGT 60.667 61.111 9.78 0.47 0.00 5.28
6900 9533 3.428282 GGTGTGTTTAGCGGCGGG 61.428 66.667 9.78 0.00 0.00 6.13
6901 9534 3.784412 CGGTGTGTTTAGCGGCGG 61.784 66.667 9.78 0.00 37.86 6.13
6902 9535 2.600475 AACGGTGTGTTTAGCGGCG 61.600 57.895 0.51 0.51 45.06 6.46
6903 9536 3.336566 AACGGTGTGTTTAGCGGC 58.663 55.556 0.00 0.00 45.06 6.53
6910 9543 0.812549 GGTCAACCAAACGGTGTGTT 59.187 50.000 0.00 0.00 44.59 3.32
6911 9544 1.370587 CGGTCAACCAAACGGTGTGT 61.371 55.000 0.00 0.00 36.67 3.72
6912 9545 1.353804 CGGTCAACCAAACGGTGTG 59.646 57.895 0.00 0.00 36.67 3.82
6913 9546 0.677414 AACGGTCAACCAAACGGTGT 60.677 50.000 0.00 0.00 36.67 4.16
6914 9547 0.452585 AAACGGTCAACCAAACGGTG 59.547 50.000 0.00 0.00 36.67 4.94
6915 9548 0.452585 CAAACGGTCAACCAAACGGT 59.547 50.000 0.00 0.00 38.95 4.83
6916 9549 0.452585 ACAAACGGTCAACCAAACGG 59.547 50.000 0.00 0.00 35.14 4.44
6917 9550 2.265647 AACAAACGGTCAACCAAACG 57.734 45.000 0.00 0.00 35.14 3.60
6918 9551 3.365520 GTCAAACAAACGGTCAACCAAAC 59.634 43.478 0.00 0.00 35.14 2.93
6919 9552 3.576648 GTCAAACAAACGGTCAACCAAA 58.423 40.909 0.00 0.00 35.14 3.28
6920 9553 2.094649 GGTCAAACAAACGGTCAACCAA 60.095 45.455 0.00 0.00 35.14 3.67
6921 9554 1.473278 GGTCAAACAAACGGTCAACCA 59.527 47.619 0.00 0.00 35.14 3.67
6922 9555 1.532298 CGGTCAAACAAACGGTCAACC 60.532 52.381 0.00 0.00 0.00 3.77
6923 9556 1.130938 ACGGTCAAACAAACGGTCAAC 59.869 47.619 0.00 0.00 0.00 3.18
6924 9557 1.451067 ACGGTCAAACAAACGGTCAA 58.549 45.000 0.00 0.00 0.00 3.18
6925 9558 1.451067 AACGGTCAAACAAACGGTCA 58.549 45.000 0.00 0.00 30.82 4.02
6926 9559 3.063861 AGTTAACGGTCAAACAAACGGTC 59.936 43.478 0.00 0.00 30.82 4.79
6927 9560 3.009026 AGTTAACGGTCAAACAAACGGT 58.991 40.909 0.00 0.00 0.00 4.83
6928 9561 3.063725 TCAGTTAACGGTCAAACAAACGG 59.936 43.478 5.64 0.00 0.00 4.44
6929 9562 4.023783 GTCAGTTAACGGTCAAACAAACG 58.976 43.478 5.64 0.00 0.00 3.60
6930 9563 5.225899 AGTCAGTTAACGGTCAAACAAAC 57.774 39.130 5.64 6.23 0.00 2.93
6931 9564 5.181622 ACAAGTCAGTTAACGGTCAAACAAA 59.818 36.000 5.64 0.00 0.00 2.83
6932 9565 4.696402 ACAAGTCAGTTAACGGTCAAACAA 59.304 37.500 5.64 0.00 0.00 2.83
6933 9566 4.093703 CACAAGTCAGTTAACGGTCAAACA 59.906 41.667 5.64 0.00 0.00 2.83
6934 9567 4.495184 CCACAAGTCAGTTAACGGTCAAAC 60.495 45.833 5.64 0.00 0.00 2.93
6935 9568 3.623960 CCACAAGTCAGTTAACGGTCAAA 59.376 43.478 5.64 0.00 0.00 2.69
6936 9569 3.199677 CCACAAGTCAGTTAACGGTCAA 58.800 45.455 5.64 0.00 0.00 3.18
6937 9570 2.484065 CCCACAAGTCAGTTAACGGTCA 60.484 50.000 5.64 0.00 0.00 4.02
6938 9571 2.140717 CCCACAAGTCAGTTAACGGTC 58.859 52.381 5.64 0.35 0.00 4.79
6939 9572 1.202722 CCCCACAAGTCAGTTAACGGT 60.203 52.381 5.64 0.00 0.00 4.83
6940 9573 1.519408 CCCCACAAGTCAGTTAACGG 58.481 55.000 0.00 0.00 0.00 4.44
6941 9574 1.519408 CCCCCACAAGTCAGTTAACG 58.481 55.000 0.00 0.00 0.00 3.18
6942 9575 1.244816 GCCCCCACAAGTCAGTTAAC 58.755 55.000 0.00 0.00 0.00 2.01
6943 9576 0.111639 GGCCCCCACAAGTCAGTTAA 59.888 55.000 0.00 0.00 0.00 2.01
6944 9577 1.063070 TGGCCCCCACAAGTCAGTTA 61.063 55.000 0.00 0.00 0.00 2.24
6945 9578 2.391130 TGGCCCCCACAAGTCAGTT 61.391 57.895 0.00 0.00 0.00 3.16
6946 9579 2.776526 TGGCCCCCACAAGTCAGT 60.777 61.111 0.00 0.00 0.00 3.41
6955 9588 4.365111 GCTGACATGTGGCCCCCA 62.365 66.667 1.15 0.00 0.00 4.96
6960 9593 3.503363 GAGGCGCTGACATGTGGC 61.503 66.667 7.64 6.71 42.29 5.01
6961 9594 1.434622 GATGAGGCGCTGACATGTGG 61.435 60.000 7.64 0.00 0.00 4.17
6962 9595 0.741927 TGATGAGGCGCTGACATGTG 60.742 55.000 7.64 0.00 0.00 3.21
6963 9596 0.036105 TTGATGAGGCGCTGACATGT 60.036 50.000 7.64 0.00 0.00 3.21
6964 9597 1.306148 ATTGATGAGGCGCTGACATG 58.694 50.000 7.64 0.00 0.00 3.21
6965 9598 2.366590 TCTATTGATGAGGCGCTGACAT 59.633 45.455 7.64 10.71 0.00 3.06
6966 9599 1.756538 TCTATTGATGAGGCGCTGACA 59.243 47.619 7.64 5.73 0.00 3.58
6967 9600 2.515926 TCTATTGATGAGGCGCTGAC 57.484 50.000 7.64 0.00 0.00 3.51
6968 9601 3.758755 AATCTATTGATGAGGCGCTGA 57.241 42.857 7.64 0.00 32.44 4.26
6969 9602 4.825546 AAAATCTATTGATGAGGCGCTG 57.174 40.909 7.64 0.00 32.44 5.18
6988 9621 9.930158 ATATTTGTAGGGGCTAATCTGTAAAAA 57.070 29.630 0.00 0.00 0.00 1.94
6989 9622 9.930158 AATATTTGTAGGGGCTAATCTGTAAAA 57.070 29.630 0.00 0.00 0.00 1.52
6990 9623 9.930158 AAATATTTGTAGGGGCTAATCTGTAAA 57.070 29.630 0.00 0.00 0.00 2.01
6991 9624 9.930158 AAAATATTTGTAGGGGCTAATCTGTAA 57.070 29.630 0.39 0.00 0.00 2.41
6992 9625 9.930158 AAAAATATTTGTAGGGGCTAATCTGTA 57.070 29.630 0.39 0.00 0.00 2.74
6993 9626 8.838649 AAAAATATTTGTAGGGGCTAATCTGT 57.161 30.769 0.39 0.00 0.00 3.41
6999 9632 9.878667 GCTTTTTAAAAATATTTGTAGGGGCTA 57.121 29.630 13.55 0.00 0.00 3.93
7000 9633 8.379331 TGCTTTTTAAAAATATTTGTAGGGGCT 58.621 29.630 13.55 0.00 0.00 5.19
7001 9634 8.554835 TGCTTTTTAAAAATATTTGTAGGGGC 57.445 30.769 13.55 9.34 0.00 5.80
7007 9640 9.278978 ACCCGATTGCTTTTTAAAAATATTTGT 57.721 25.926 13.55 0.00 0.00 2.83
7008 9641 9.753669 GACCCGATTGCTTTTTAAAAATATTTG 57.246 29.630 13.55 3.54 0.00 2.32
7009 9642 8.941977 GGACCCGATTGCTTTTTAAAAATATTT 58.058 29.630 13.55 0.00 0.00 1.40
7010 9643 7.551262 GGGACCCGATTGCTTTTTAAAAATATT 59.449 33.333 13.55 3.69 0.00 1.28
7011 9644 7.045416 GGGACCCGATTGCTTTTTAAAAATAT 58.955 34.615 13.55 7.99 0.00 1.28
7012 9645 6.211785 AGGGACCCGATTGCTTTTTAAAAATA 59.788 34.615 13.55 4.09 0.00 1.40
7013 9646 5.012664 AGGGACCCGATTGCTTTTTAAAAAT 59.987 36.000 13.55 0.00 0.00 1.82
7014 9647 4.345547 AGGGACCCGATTGCTTTTTAAAAA 59.654 37.500 12.62 12.62 0.00 1.94
7015 9648 3.898741 AGGGACCCGATTGCTTTTTAAAA 59.101 39.130 4.40 0.00 0.00 1.52
7016 9649 3.257127 CAGGGACCCGATTGCTTTTTAAA 59.743 43.478 4.40 0.00 0.00 1.52
7017 9650 2.823154 CAGGGACCCGATTGCTTTTTAA 59.177 45.455 4.40 0.00 0.00 1.52
7018 9651 2.442413 CAGGGACCCGATTGCTTTTTA 58.558 47.619 4.40 0.00 0.00 1.52
7019 9652 1.256812 CAGGGACCCGATTGCTTTTT 58.743 50.000 4.40 0.00 0.00 1.94
7020 9653 0.611896 CCAGGGACCCGATTGCTTTT 60.612 55.000 4.40 0.00 0.00 2.27
7021 9654 1.000896 CCAGGGACCCGATTGCTTT 60.001 57.895 4.40 0.00 0.00 3.51
7022 9655 1.497309 TTCCAGGGACCCGATTGCTT 61.497 55.000 4.40 0.00 0.00 3.91
7023 9656 1.281925 ATTCCAGGGACCCGATTGCT 61.282 55.000 4.40 0.00 0.00 3.91
7024 9657 0.819666 GATTCCAGGGACCCGATTGC 60.820 60.000 4.40 0.00 0.00 3.56
7025 9658 0.546122 TGATTCCAGGGACCCGATTG 59.454 55.000 4.40 0.00 0.00 2.67
7026 9659 1.522900 ATGATTCCAGGGACCCGATT 58.477 50.000 4.40 0.00 0.00 3.34
7027 9660 1.522900 AATGATTCCAGGGACCCGAT 58.477 50.000 4.40 0.00 0.00 4.18
7028 9661 1.295020 AAATGATTCCAGGGACCCGA 58.705 50.000 4.40 0.00 0.00 5.14
7029 9662 3.290948 TTAAATGATTCCAGGGACCCG 57.709 47.619 4.40 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.