Multiple sequence alignment - TraesCS1B01G220100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G220100 chr1B 100.000 2050 0 0 1 2050 397056566 397058615 0.000000e+00 3786.0
1 TraesCS1B01G220100 chr1B 100.000 408 0 0 2508 2915 397059073 397059480 0.000000e+00 754.0
2 TraesCS1B01G220100 chr1A 93.414 1974 97 18 1 1949 368801990 368803955 0.000000e+00 2894.0
3 TraesCS1B01G220100 chr1D 93.883 1929 93 14 1 1905 295541066 295542993 0.000000e+00 2885.0
4 TraesCS1B01G220100 chr4B 85.207 338 43 7 1 335 660662101 660661768 1.000000e-89 340.0
5 TraesCS1B01G220100 chrUn 85.196 331 43 4 1 328 110658475 110658148 4.650000e-88 335.0
6 TraesCS1B01G220100 chr5A 85.163 337 39 10 1 335 700663820 700663493 4.650000e-88 335.0
7 TraesCS1B01G220100 chr5A 78.226 372 58 18 2542 2901 691443008 691442648 1.760000e-52 217.0
8 TraesCS1B01G220100 chr5A 78.289 152 32 1 2581 2731 268602710 268602559 2.390000e-16 97.1
9 TraesCS1B01G220100 chr5A 85.714 84 5 6 2576 2654 224146950 224147031 6.700000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G220100 chr1B 397056566 397059480 2914 False 2270 3786 100.000 1 2915 2 chr1B.!!$F1 2914
1 TraesCS1B01G220100 chr1A 368801990 368803955 1965 False 2894 2894 93.414 1 1949 1 chr1A.!!$F1 1948
2 TraesCS1B01G220100 chr1D 295541066 295542993 1927 False 2885 2885 93.883 1 1905 1 chr1D.!!$F1 1904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 957 0.174845 CCACTCCACGATAAAGCCGA 59.825 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2675 2713 0.03309 GGAGACGAAAAGACGGGTGT 59.967 55.0 0.0 0.0 37.61 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 1.968017 AGACGTAGACGGGCACGAA 60.968 57.895 19.19 0.00 44.60 3.85
434 435 0.892755 CACCGCCACCTGTAGAAGTA 59.107 55.000 0.00 0.00 0.00 2.24
465 466 4.803426 CTGTCGAGGAGGCGGCAC 62.803 72.222 13.08 4.32 41.44 5.01
534 535 4.214327 GGAGAGGGCTTCGCTCGG 62.214 72.222 0.00 0.00 46.03 4.63
664 665 2.169832 CGGAGCTTTGACTCTTGGAA 57.830 50.000 0.00 0.00 36.87 3.53
726 727 2.035704 GAGAGGAGATGCGTGTGATGAT 59.964 50.000 0.00 0.00 0.00 2.45
738 739 1.091771 GTGATGATCACCCACTGGCG 61.092 60.000 14.48 0.00 41.37 5.69
766 767 1.012486 CGTAAGCTGTTGGGTCGTCC 61.012 60.000 0.00 0.00 0.00 4.79
767 768 0.320697 GTAAGCTGTTGGGTCGTCCT 59.679 55.000 0.00 0.00 36.20 3.85
863 867 3.352338 CTCTGCCGTACCGACACCC 62.352 68.421 0.00 0.00 0.00 4.61
952 957 0.174845 CCACTCCACGATAAAGCCGA 59.825 55.000 0.00 0.00 0.00 5.54
1279 1289 1.137086 CTCTAGCACGTACCAGCCATT 59.863 52.381 0.00 0.00 0.00 3.16
1330 1340 3.920412 TGATCGACGAATATGTATGCTGC 59.080 43.478 0.00 0.00 0.00 5.25
1440 1450 0.187606 AGGGGGTTTTCAAGGTGGAC 59.812 55.000 0.00 0.00 0.00 4.02
1549 1559 1.740585 CCGTGTTCACCAACTTCAACA 59.259 47.619 0.00 0.00 33.17 3.33
1550 1560 2.162608 CCGTGTTCACCAACTTCAACAA 59.837 45.455 0.00 0.00 33.17 2.83
1556 1566 0.738389 ACCAACTTCAACAACGGCAG 59.262 50.000 0.00 0.00 0.00 4.85
1569 1579 4.162690 GGCAGGACCGGCGAGAAT 62.163 66.667 9.30 0.00 0.00 2.40
1716 1738 1.212616 CGCTGGAATGATCGGTTCTC 58.787 55.000 9.63 2.93 0.00 2.87
1730 1752 2.642995 GGTTCTCGCGTTTTGGTTTAC 58.357 47.619 5.77 0.00 0.00 2.01
1756 1778 0.819582 TACGGGTTCTCGATGGTTCC 59.180 55.000 0.00 0.00 0.00 3.62
1760 1782 0.245539 GGTTCTCGATGGTTCCACGA 59.754 55.000 12.82 12.82 34.90 4.35
1769 1791 2.502213 TGGTTCCACGATAGCATACG 57.498 50.000 0.00 0.00 42.67 3.06
1807 1829 2.474032 GCTTCTAAAATGTCCGTGCGTC 60.474 50.000 0.00 0.00 0.00 5.19
1808 1830 2.736144 TCTAAAATGTCCGTGCGTCT 57.264 45.000 0.00 0.00 0.00 4.18
1814 1844 0.667487 ATGTCCGTGCGTCTGAACAG 60.667 55.000 0.00 0.00 0.00 3.16
1835 1865 5.934625 ACAGGATCTGATTTGTACTGTCAAC 59.065 40.000 1.59 0.00 32.79 3.18
1868 1900 6.554334 TTTTTGAGCTGGTCTATGTGTTAC 57.446 37.500 8.47 0.00 0.00 2.50
1878 1910 5.992829 TGGTCTATGTGTTACGTTTCACAAT 59.007 36.000 22.38 15.51 45.51 2.71
1928 1966 6.549364 AGTTCATACTAGCTAAGTGCATCTCT 59.451 38.462 0.00 0.00 45.94 3.10
1936 1974 3.133003 GCTAAGTGCATCTCTAACCCTCA 59.867 47.826 0.00 0.00 42.31 3.86
1944 1982 1.897802 TCTCTAACCCTCAAACCGTCC 59.102 52.381 0.00 0.00 0.00 4.79
1949 1987 1.153429 CCCTCAAACCGTCCGGATC 60.153 63.158 7.81 0.00 38.96 3.36
1950 1988 1.153429 CCTCAAACCGTCCGGATCC 60.153 63.158 7.81 0.00 38.96 3.36
1951 1989 1.518572 CTCAAACCGTCCGGATCCG 60.519 63.158 27.65 27.65 38.96 4.18
1952 1990 2.221906 CTCAAACCGTCCGGATCCGT 62.222 60.000 31.22 11.03 38.96 4.69
1953 1991 1.808390 CAAACCGTCCGGATCCGTC 60.808 63.158 31.22 21.85 38.96 4.79
1954 1992 3.010413 AAACCGTCCGGATCCGTCC 62.010 63.158 31.22 19.85 41.40 4.79
1963 2001 2.973420 GGATCCGTCCGAATCACAC 58.027 57.895 0.00 0.00 34.13 3.82
1964 2002 0.870307 GGATCCGTCCGAATCACACG 60.870 60.000 0.00 0.00 34.13 4.49
1966 2004 2.260434 CCGTCCGAATCACACGGT 59.740 61.111 10.82 0.00 46.58 4.83
1967 2005 1.804326 CCGTCCGAATCACACGGTC 60.804 63.158 10.82 0.00 46.58 4.79
1970 2008 2.508439 CCGAATCACACGGTCCGG 60.508 66.667 17.28 7.22 44.57 5.14
1971 2009 2.569657 CGAATCACACGGTCCGGA 59.430 61.111 17.28 0.00 0.00 5.14
1972 2010 1.804326 CGAATCACACGGTCCGGAC 60.804 63.158 27.04 27.04 0.00 4.79
1973 2011 1.804326 GAATCACACGGTCCGGACG 60.804 63.158 27.68 23.43 37.36 4.79
1974 2012 2.482296 GAATCACACGGTCCGGACGT 62.482 60.000 27.68 24.06 46.82 4.34
1979 2017 2.500646 ACGGTCCGGACGTGTTTT 59.499 55.556 27.68 5.52 43.78 2.43
1980 2018 1.884004 ACGGTCCGGACGTGTTTTG 60.884 57.895 27.68 13.11 43.78 2.44
1981 2019 1.884004 CGGTCCGGACGTGTTTTGT 60.884 57.895 27.68 0.00 0.00 2.83
1982 2020 1.824272 CGGTCCGGACGTGTTTTGTC 61.824 60.000 27.68 9.88 35.60 3.18
1983 2021 0.810823 GGTCCGGACGTGTTTTGTCA 60.811 55.000 27.68 0.00 38.10 3.58
1984 2022 1.223187 GTCCGGACGTGTTTTGTCAT 58.777 50.000 20.85 0.00 38.10 3.06
1985 2023 1.193874 GTCCGGACGTGTTTTGTCATC 59.806 52.381 20.85 0.00 38.10 2.92
1986 2024 0.515564 CCGGACGTGTTTTGTCATCC 59.484 55.000 0.00 0.00 38.10 3.51
1987 2025 1.222300 CGGACGTGTTTTGTCATCCA 58.778 50.000 0.00 0.00 38.10 3.41
1988 2026 1.600013 CGGACGTGTTTTGTCATCCAA 59.400 47.619 0.00 0.00 38.10 3.53
1989 2027 2.032302 CGGACGTGTTTTGTCATCCAAA 59.968 45.455 0.00 0.00 41.25 3.28
1990 2028 3.304391 CGGACGTGTTTTGTCATCCAAAT 60.304 43.478 0.00 0.00 42.45 2.32
1991 2029 4.083749 CGGACGTGTTTTGTCATCCAAATA 60.084 41.667 0.00 0.00 42.45 1.40
1992 2030 5.151389 GGACGTGTTTTGTCATCCAAATAC 58.849 41.667 0.00 0.00 42.45 1.89
1993 2031 5.048991 GGACGTGTTTTGTCATCCAAATACT 60.049 40.000 0.00 0.00 42.45 2.12
1994 2032 5.997385 ACGTGTTTTGTCATCCAAATACTC 58.003 37.500 0.00 0.00 42.45 2.59
1995 2033 5.048991 ACGTGTTTTGTCATCCAAATACTCC 60.049 40.000 0.00 0.00 42.45 3.85
1996 2034 5.049060 CGTGTTTTGTCATCCAAATACTCCA 60.049 40.000 0.00 0.00 42.45 3.86
1997 2035 6.349280 CGTGTTTTGTCATCCAAATACTCCAT 60.349 38.462 0.00 0.00 42.45 3.41
1998 2036 7.029563 GTGTTTTGTCATCCAAATACTCCATC 58.970 38.462 0.00 0.00 42.45 3.51
1999 2037 6.152661 TGTTTTGTCATCCAAATACTCCATCC 59.847 38.462 0.00 0.00 42.45 3.51
2000 2038 4.071961 TGTCATCCAAATACTCCATCCG 57.928 45.455 0.00 0.00 0.00 4.18
2001 2039 3.454447 TGTCATCCAAATACTCCATCCGT 59.546 43.478 0.00 0.00 0.00 4.69
2002 2040 4.058817 GTCATCCAAATACTCCATCCGTC 58.941 47.826 0.00 0.00 0.00 4.79
2003 2041 3.071023 TCATCCAAATACTCCATCCGTCC 59.929 47.826 0.00 0.00 0.00 4.79
2004 2042 2.473070 TCCAAATACTCCATCCGTCCA 58.527 47.619 0.00 0.00 0.00 4.02
2005 2043 2.169769 TCCAAATACTCCATCCGTCCAC 59.830 50.000 0.00 0.00 0.00 4.02
2006 2044 2.201732 CAAATACTCCATCCGTCCACG 58.798 52.381 0.00 0.00 39.44 4.94
2016 2054 2.578713 CGTCCACGGATCGGTTCG 60.579 66.667 2.68 0.00 35.37 3.95
2017 2055 2.202703 GTCCACGGATCGGTTCGG 60.203 66.667 0.00 3.45 0.00 4.30
2018 2056 2.361483 TCCACGGATCGGTTCGGA 60.361 61.111 0.00 5.83 0.00 4.55
2019 2057 2.202703 CCACGGATCGGTTCGGAC 60.203 66.667 0.00 0.00 0.00 4.79
2020 2058 2.578713 CACGGATCGGTTCGGACG 60.579 66.667 0.00 0.00 0.00 4.79
2021 2059 3.058160 ACGGATCGGTTCGGACGT 61.058 61.111 0.00 0.00 0.00 4.34
2022 2060 2.277756 CGGATCGGTTCGGACGTC 60.278 66.667 7.13 7.13 0.00 4.34
2023 2061 2.103736 GGATCGGTTCGGACGTCC 59.896 66.667 25.28 25.28 0.00 4.79
2048 2086 5.593183 TTTTTCACAAACCGGAAACAAAC 57.407 34.783 9.46 0.00 33.10 2.93
2049 2087 2.943449 TCACAAACCGGAAACAAACC 57.057 45.000 9.46 0.00 0.00 3.27
2538 2576 3.096791 GCTGGTGAGCATCGCTTC 58.903 61.111 0.00 0.00 46.91 3.86
2539 2577 1.742880 GCTGGTGAGCATCGCTTCA 60.743 57.895 0.00 0.00 46.91 3.02
2540 2578 1.703438 GCTGGTGAGCATCGCTTCAG 61.703 60.000 9.20 9.20 46.91 3.02
2541 2579 0.108472 CTGGTGAGCATCGCTTCAGA 60.108 55.000 8.33 0.00 46.91 3.27
2542 2580 0.108472 TGGTGAGCATCGCTTCAGAG 60.108 55.000 0.00 0.00 46.91 3.35
2543 2581 1.427592 GGTGAGCATCGCTTCAGAGC 61.428 60.000 0.00 0.00 46.91 4.09
2561 2599 3.432759 CGTCATCGCTGCATTCATG 57.567 52.632 0.00 0.00 0.00 3.07
2573 2611 1.022735 CATTCATGCCAGTCCAGAGC 58.977 55.000 0.00 0.00 0.00 4.09
2574 2612 0.622136 ATTCATGCCAGTCCAGAGCA 59.378 50.000 0.00 0.00 41.50 4.26
2575 2613 0.035725 TTCATGCCAGTCCAGAGCAG 60.036 55.000 0.00 0.00 40.40 4.24
2576 2614 0.906282 TCATGCCAGTCCAGAGCAGA 60.906 55.000 0.00 0.00 40.40 4.26
2577 2615 0.180642 CATGCCAGTCCAGAGCAGAT 59.819 55.000 0.00 0.00 40.40 2.90
2578 2616 0.180642 ATGCCAGTCCAGAGCAGATG 59.819 55.000 0.00 0.00 40.40 2.90
2579 2617 1.818785 GCCAGTCCAGAGCAGATGC 60.819 63.158 0.00 0.00 42.49 3.91
2589 2627 4.100981 GCAGATGCGACCTCTCAC 57.899 61.111 0.00 0.00 0.00 3.51
2590 2628 1.515020 GCAGATGCGACCTCTCACT 59.485 57.895 0.00 0.00 0.00 3.41
2591 2629 0.741326 GCAGATGCGACCTCTCACTA 59.259 55.000 0.00 0.00 0.00 2.74
2592 2630 1.268999 GCAGATGCGACCTCTCACTAG 60.269 57.143 0.00 0.00 0.00 2.57
2593 2631 2.293170 CAGATGCGACCTCTCACTAGA 58.707 52.381 0.00 0.00 0.00 2.43
2595 2633 2.092646 AGATGCGACCTCTCACTAGAGT 60.093 50.000 0.00 0.00 46.80 3.24
2596 2634 1.740297 TGCGACCTCTCACTAGAGTC 58.260 55.000 0.00 0.00 46.80 3.36
2597 2635 0.653636 GCGACCTCTCACTAGAGTCG 59.346 60.000 16.19 16.19 46.80 4.18
2598 2636 1.292061 CGACCTCTCACTAGAGTCGG 58.708 60.000 0.00 0.00 46.80 4.79
2599 2637 1.018910 GACCTCTCACTAGAGTCGGC 58.981 60.000 0.00 0.00 46.80 5.54
2600 2638 0.328592 ACCTCTCACTAGAGTCGGCA 59.671 55.000 0.00 0.00 46.80 5.69
2601 2639 1.064314 ACCTCTCACTAGAGTCGGCAT 60.064 52.381 0.00 0.00 46.80 4.40
2602 2640 2.028130 CCTCTCACTAGAGTCGGCATT 58.972 52.381 0.00 0.00 46.80 3.56
2603 2641 2.223688 CCTCTCACTAGAGTCGGCATTG 60.224 54.545 0.00 0.00 46.80 2.82
2604 2642 2.685388 CTCTCACTAGAGTCGGCATTGA 59.315 50.000 0.00 0.00 43.75 2.57
2605 2643 3.089284 TCTCACTAGAGTCGGCATTGAA 58.911 45.455 0.00 0.00 42.66 2.69
2606 2644 3.129462 TCTCACTAGAGTCGGCATTGAAG 59.871 47.826 0.00 0.00 42.66 3.02
2607 2645 1.929836 CACTAGAGTCGGCATTGAAGC 59.070 52.381 0.00 0.00 0.00 3.86
2614 2652 2.126346 GGCATTGAAGCCGTGTGC 60.126 61.111 0.00 0.00 46.12 4.57
2615 2653 2.126346 GCATTGAAGCCGTGTGCC 60.126 61.111 0.00 0.00 42.71 5.01
2616 2654 2.176546 CATTGAAGCCGTGTGCCG 59.823 61.111 0.00 0.00 42.71 5.69
2661 2699 2.359230 GGTGCAAGCGCCTTCTCT 60.359 61.111 16.95 0.00 42.89 3.10
2662 2700 2.394563 GGTGCAAGCGCCTTCTCTC 61.395 63.158 16.95 0.00 42.89 3.20
2663 2701 2.046892 TGCAAGCGCCTTCTCTCC 60.047 61.111 2.29 0.00 37.32 3.71
2664 2702 3.191539 GCAAGCGCCTTCTCTCCG 61.192 66.667 2.29 0.00 0.00 4.63
2668 2706 2.512515 GCGCCTTCTCTCCGCATT 60.513 61.111 0.00 0.00 46.32 3.56
2669 2707 2.529619 GCGCCTTCTCTCCGCATTC 61.530 63.158 0.00 0.00 46.32 2.67
2670 2708 1.153568 CGCCTTCTCTCCGCATTCA 60.154 57.895 0.00 0.00 0.00 2.57
2671 2709 0.740868 CGCCTTCTCTCCGCATTCAA 60.741 55.000 0.00 0.00 0.00 2.69
2672 2710 1.453155 GCCTTCTCTCCGCATTCAAA 58.547 50.000 0.00 0.00 0.00 2.69
2673 2711 1.131315 GCCTTCTCTCCGCATTCAAAC 59.869 52.381 0.00 0.00 0.00 2.93
2674 2712 1.394917 CCTTCTCTCCGCATTCAAACG 59.605 52.381 0.00 0.00 0.00 3.60
2675 2713 2.337583 CTTCTCTCCGCATTCAAACGA 58.662 47.619 0.00 0.00 0.00 3.85
2676 2714 1.710013 TCTCTCCGCATTCAAACGAC 58.290 50.000 0.00 0.00 0.00 4.34
2677 2715 1.000394 TCTCTCCGCATTCAAACGACA 60.000 47.619 0.00 0.00 0.00 4.35
2678 2716 1.126846 CTCTCCGCATTCAAACGACAC 59.873 52.381 0.00 0.00 0.00 3.67
2679 2717 0.165944 CTCCGCATTCAAACGACACC 59.834 55.000 0.00 0.00 0.00 4.16
2680 2718 1.209127 CCGCATTCAAACGACACCC 59.791 57.895 0.00 0.00 0.00 4.61
2681 2719 1.154488 CGCATTCAAACGACACCCG 60.154 57.895 0.00 0.00 45.44 5.28
2690 2728 4.331356 CGACACCCGTCTTTTCGT 57.669 55.556 0.00 0.00 40.23 3.85
2691 2729 2.139210 CGACACCCGTCTTTTCGTC 58.861 57.895 0.00 0.00 40.23 4.20
2692 2730 0.318445 CGACACCCGTCTTTTCGTCT 60.318 55.000 0.00 0.00 40.23 4.18
2693 2731 1.416373 GACACCCGTCTTTTCGTCTC 58.584 55.000 0.00 0.00 39.22 3.36
2694 2732 0.033090 ACACCCGTCTTTTCGTCTCC 59.967 55.000 0.00 0.00 0.00 3.71
2695 2733 0.669625 CACCCGTCTTTTCGTCTCCC 60.670 60.000 0.00 0.00 0.00 4.30
2696 2734 0.830866 ACCCGTCTTTTCGTCTCCCT 60.831 55.000 0.00 0.00 0.00 4.20
2697 2735 0.108756 CCCGTCTTTTCGTCTCCCTC 60.109 60.000 0.00 0.00 0.00 4.30
2698 2736 0.108756 CCGTCTTTTCGTCTCCCTCC 60.109 60.000 0.00 0.00 0.00 4.30
2699 2737 0.889306 CGTCTTTTCGTCTCCCTCCT 59.111 55.000 0.00 0.00 0.00 3.69
2700 2738 1.272769 CGTCTTTTCGTCTCCCTCCTT 59.727 52.381 0.00 0.00 0.00 3.36
2701 2739 2.288886 CGTCTTTTCGTCTCCCTCCTTT 60.289 50.000 0.00 0.00 0.00 3.11
2702 2740 3.057033 CGTCTTTTCGTCTCCCTCCTTTA 60.057 47.826 0.00 0.00 0.00 1.85
2703 2741 4.560108 CGTCTTTTCGTCTCCCTCCTTTAA 60.560 45.833 0.00 0.00 0.00 1.52
2704 2742 5.303165 GTCTTTTCGTCTCCCTCCTTTAAA 58.697 41.667 0.00 0.00 0.00 1.52
2705 2743 5.178996 GTCTTTTCGTCTCCCTCCTTTAAAC 59.821 44.000 0.00 0.00 0.00 2.01
2706 2744 4.693042 TTTCGTCTCCCTCCTTTAAACA 57.307 40.909 0.00 0.00 0.00 2.83
2707 2745 4.693042 TTCGTCTCCCTCCTTTAAACAA 57.307 40.909 0.00 0.00 0.00 2.83
2708 2746 4.267349 TCGTCTCCCTCCTTTAAACAAG 57.733 45.455 0.00 0.00 0.00 3.16
2709 2747 2.742589 CGTCTCCCTCCTTTAAACAAGC 59.257 50.000 0.00 0.00 0.00 4.01
2710 2748 2.742589 GTCTCCCTCCTTTAAACAAGCG 59.257 50.000 0.00 0.00 0.00 4.68
2711 2749 2.370849 TCTCCCTCCTTTAAACAAGCGT 59.629 45.455 0.00 0.00 0.00 5.07
2712 2750 2.484264 CTCCCTCCTTTAAACAAGCGTG 59.516 50.000 0.00 0.00 0.00 5.34
2713 2751 1.539827 CCCTCCTTTAAACAAGCGTGG 59.460 52.381 4.26 0.00 0.00 4.94
2714 2752 2.227194 CCTCCTTTAAACAAGCGTGGT 58.773 47.619 4.26 0.00 0.00 4.16
2715 2753 2.621526 CCTCCTTTAAACAAGCGTGGTT 59.378 45.455 8.29 8.29 38.54 3.67
2716 2754 3.550030 CCTCCTTTAAACAAGCGTGGTTG 60.550 47.826 13.51 10.03 34.77 3.77
2717 2755 2.124122 CCTTTAAACAAGCGTGGTTGC 58.876 47.619 13.51 0.00 34.77 4.17
2718 2756 2.124122 CTTTAAACAAGCGTGGTTGCC 58.876 47.619 13.51 0.00 34.77 4.52
2719 2757 1.103803 TTAAACAAGCGTGGTTGCCA 58.896 45.000 13.51 0.00 34.77 4.92
2720 2758 1.103803 TAAACAAGCGTGGTTGCCAA 58.896 45.000 13.51 0.00 34.77 4.52
2721 2759 0.179113 AAACAAGCGTGGTTGCCAAG 60.179 50.000 0.88 0.00 31.76 3.61
2722 2760 2.015227 AACAAGCGTGGTTGCCAAGG 62.015 55.000 11.40 0.00 34.18 3.61
2723 2761 2.192861 CAAGCGTGGTTGCCAAGGA 61.193 57.895 0.00 0.00 34.18 3.36
2724 2762 1.454847 AAGCGTGGTTGCCAAGGAA 60.455 52.632 3.53 0.00 34.18 3.36
2725 2763 1.734388 AAGCGTGGTTGCCAAGGAAC 61.734 55.000 3.53 0.00 34.18 3.62
2726 2764 3.039134 CGTGGTTGCCAAGGAACC 58.961 61.111 10.73 10.73 42.90 3.62
2727 2765 1.528309 CGTGGTTGCCAAGGAACCT 60.528 57.895 17.34 0.00 43.00 3.50
2728 2766 0.250553 CGTGGTTGCCAAGGAACCTA 60.251 55.000 17.34 3.47 43.00 3.08
2729 2767 1.244816 GTGGTTGCCAAGGAACCTAC 58.755 55.000 17.34 10.79 43.00 3.18
2730 2768 1.145571 TGGTTGCCAAGGAACCTACT 58.854 50.000 17.34 0.00 43.00 2.57
2731 2769 1.073284 TGGTTGCCAAGGAACCTACTC 59.927 52.381 17.34 0.00 43.00 2.59
2732 2770 1.351350 GGTTGCCAAGGAACCTACTCT 59.649 52.381 10.42 0.00 39.94 3.24
2733 2771 2.427506 GTTGCCAAGGAACCTACTCTG 58.572 52.381 0.00 0.00 0.00 3.35
2734 2772 2.024176 TGCCAAGGAACCTACTCTGA 57.976 50.000 0.00 0.00 0.00 3.27
2735 2773 1.623811 TGCCAAGGAACCTACTCTGAC 59.376 52.381 0.00 0.00 0.00 3.51
2736 2774 1.404315 GCCAAGGAACCTACTCTGACG 60.404 57.143 0.00 0.00 0.00 4.35
2737 2775 1.404315 CCAAGGAACCTACTCTGACGC 60.404 57.143 0.00 0.00 0.00 5.19
2738 2776 0.896226 AAGGAACCTACTCTGACGCC 59.104 55.000 0.00 0.00 0.00 5.68
2739 2777 0.971447 AGGAACCTACTCTGACGCCC 60.971 60.000 0.00 0.00 0.00 6.13
2740 2778 1.255667 GGAACCTACTCTGACGCCCA 61.256 60.000 0.00 0.00 0.00 5.36
2741 2779 0.108756 GAACCTACTCTGACGCCCAC 60.109 60.000 0.00 0.00 0.00 4.61
2742 2780 0.830444 AACCTACTCTGACGCCCACA 60.830 55.000 0.00 0.00 0.00 4.17
2743 2781 0.614979 ACCTACTCTGACGCCCACAT 60.615 55.000 0.00 0.00 0.00 3.21
2744 2782 0.179100 CCTACTCTGACGCCCACATG 60.179 60.000 0.00 0.00 0.00 3.21
2745 2783 0.807667 CTACTCTGACGCCCACATGC 60.808 60.000 0.00 0.00 0.00 4.06
2753 2791 4.294523 GCCCACATGCGAACACTA 57.705 55.556 0.00 0.00 0.00 2.74
2754 2792 1.794222 GCCCACATGCGAACACTAC 59.206 57.895 0.00 0.00 0.00 2.73
2755 2793 1.644786 GCCCACATGCGAACACTACC 61.645 60.000 0.00 0.00 0.00 3.18
2756 2794 1.024579 CCCACATGCGAACACTACCC 61.025 60.000 0.00 0.00 0.00 3.69
2757 2795 1.358725 CCACATGCGAACACTACCCG 61.359 60.000 0.00 0.00 0.00 5.28
2758 2796 0.669318 CACATGCGAACACTACCCGT 60.669 55.000 0.00 0.00 0.00 5.28
2759 2797 0.389426 ACATGCGAACACTACCCGTC 60.389 55.000 0.00 0.00 0.00 4.79
2760 2798 1.082117 CATGCGAACACTACCCGTCC 61.082 60.000 0.00 0.00 0.00 4.79
2761 2799 2.505557 GCGAACACTACCCGTCCG 60.506 66.667 0.00 0.00 0.00 4.79
2762 2800 2.956987 CGAACACTACCCGTCCGT 59.043 61.111 0.00 0.00 0.00 4.69
2763 2801 1.154150 CGAACACTACCCGTCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
2764 2802 1.213799 GAACACTACCCGTCCGTCC 59.786 63.158 0.00 0.00 0.00 4.79
2765 2803 2.533391 GAACACTACCCGTCCGTCCG 62.533 65.000 0.00 0.00 0.00 4.79
2766 2804 3.058160 CACTACCCGTCCGTCCGT 61.058 66.667 0.00 0.00 0.00 4.69
2767 2805 2.747855 ACTACCCGTCCGTCCGTC 60.748 66.667 0.00 0.00 0.00 4.79
2768 2806 2.437359 CTACCCGTCCGTCCGTCT 60.437 66.667 0.00 0.00 0.00 4.18
2769 2807 2.747460 TACCCGTCCGTCCGTCTG 60.747 66.667 0.00 0.00 0.00 3.51
2770 2808 3.252627 TACCCGTCCGTCCGTCTGA 62.253 63.158 0.00 0.00 0.00 3.27
2771 2809 4.112341 CCCGTCCGTCCGTCTGAC 62.112 72.222 0.00 0.00 40.81 3.51
2788 2826 4.905836 CGGCACACGTAAAACACC 57.094 55.556 0.00 0.00 37.93 4.16
2789 2827 1.280444 CGGCACACGTAAAACACCC 59.720 57.895 0.00 0.00 37.93 4.61
2790 2828 1.655885 GGCACACGTAAAACACCCC 59.344 57.895 0.00 0.00 0.00 4.95
2791 2829 1.280444 GCACACGTAAAACACCCCG 59.720 57.895 0.00 0.00 0.00 5.73
2792 2830 1.280444 CACACGTAAAACACCCCGC 59.720 57.895 0.00 0.00 0.00 6.13
2793 2831 1.893335 ACACGTAAAACACCCCGCC 60.893 57.895 0.00 0.00 0.00 6.13
2794 2832 2.665854 ACGTAAAACACCCCGCCG 60.666 61.111 0.00 0.00 0.00 6.46
2795 2833 4.092652 CGTAAAACACCCCGCCGC 62.093 66.667 0.00 0.00 0.00 6.53
2796 2834 2.670592 GTAAAACACCCCGCCGCT 60.671 61.111 0.00 0.00 0.00 5.52
2797 2835 2.113562 TAAAACACCCCGCCGCTT 59.886 55.556 0.00 0.00 0.00 4.68
2798 2836 2.262303 TAAAACACCCCGCCGCTTG 61.262 57.895 0.00 0.00 0.00 4.01
2812 2850 2.825836 CTTGGCCAGGCATCCGTC 60.826 66.667 15.19 0.00 0.00 4.79
2813 2851 3.329889 TTGGCCAGGCATCCGTCT 61.330 61.111 15.19 0.00 0.00 4.18
2814 2852 3.626996 TTGGCCAGGCATCCGTCTG 62.627 63.158 15.19 0.00 44.93 3.51
2816 2854 4.479993 GCCAGGCATCCGTCTGCT 62.480 66.667 6.55 0.00 43.92 4.24
2817 2855 3.094062 GCCAGGCATCCGTCTGCTA 62.094 63.158 6.55 0.00 43.92 3.49
2818 2856 1.750930 CCAGGCATCCGTCTGCTAT 59.249 57.895 6.43 0.00 43.92 2.97
2819 2857 0.107456 CCAGGCATCCGTCTGCTATT 59.893 55.000 6.43 0.00 43.92 1.73
2820 2858 1.475751 CCAGGCATCCGTCTGCTATTT 60.476 52.381 6.43 0.00 43.92 1.40
2821 2859 2.224281 CCAGGCATCCGTCTGCTATTTA 60.224 50.000 6.43 0.00 43.92 1.40
2822 2860 3.466836 CAGGCATCCGTCTGCTATTTAA 58.533 45.455 6.43 0.00 38.21 1.52
2823 2861 3.876914 CAGGCATCCGTCTGCTATTTAAA 59.123 43.478 6.43 0.00 38.21 1.52
2824 2862 4.516698 CAGGCATCCGTCTGCTATTTAAAT 59.483 41.667 5.89 5.89 38.21 1.40
2825 2863 4.516698 AGGCATCCGTCTGCTATTTAAATG 59.483 41.667 11.05 2.59 41.95 2.32
2826 2864 4.275936 GGCATCCGTCTGCTATTTAAATGT 59.724 41.667 11.05 0.00 41.95 2.71
2827 2865 5.207768 GCATCCGTCTGCTATTTAAATGTG 58.792 41.667 11.05 5.02 39.12 3.21
2828 2866 5.751680 CATCCGTCTGCTATTTAAATGTGG 58.248 41.667 11.05 2.70 0.00 4.17
2829 2867 3.625764 TCCGTCTGCTATTTAAATGTGGC 59.374 43.478 11.05 11.95 0.00 5.01
2830 2868 3.243068 CCGTCTGCTATTTAAATGTGGCC 60.243 47.826 11.05 0.00 0.00 5.36
2831 2869 3.376859 CGTCTGCTATTTAAATGTGGCCA 59.623 43.478 0.00 0.00 0.00 5.36
2832 2870 4.142491 CGTCTGCTATTTAAATGTGGCCAA 60.142 41.667 7.24 0.00 0.00 4.52
2833 2871 5.343249 GTCTGCTATTTAAATGTGGCCAAG 58.657 41.667 7.24 0.00 0.00 3.61
2834 2872 4.114794 CTGCTATTTAAATGTGGCCAAGC 58.885 43.478 7.24 10.55 0.00 4.01
2862 2900 4.436998 CGCGTCCCACCTCCACTC 62.437 72.222 0.00 0.00 0.00 3.51
2863 2901 4.083862 GCGTCCCACCTCCACTCC 62.084 72.222 0.00 0.00 0.00 3.85
2864 2902 3.391382 CGTCCCACCTCCACTCCC 61.391 72.222 0.00 0.00 0.00 4.30
2865 2903 3.391382 GTCCCACCTCCACTCCCG 61.391 72.222 0.00 0.00 0.00 5.14
2866 2904 3.596799 TCCCACCTCCACTCCCGA 61.597 66.667 0.00 0.00 0.00 5.14
2867 2905 3.391382 CCCACCTCCACTCCCGAC 61.391 72.222 0.00 0.00 0.00 4.79
2868 2906 3.391382 CCACCTCCACTCCCGACC 61.391 72.222 0.00 0.00 0.00 4.79
2869 2907 2.283966 CACCTCCACTCCCGACCT 60.284 66.667 0.00 0.00 0.00 3.85
2870 2908 2.037527 ACCTCCACTCCCGACCTC 59.962 66.667 0.00 0.00 0.00 3.85
2871 2909 2.760385 CCTCCACTCCCGACCTCC 60.760 72.222 0.00 0.00 0.00 4.30
2872 2910 2.360980 CTCCACTCCCGACCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
2873 2911 1.755008 CTCCACTCCCGACCTCCTC 60.755 68.421 0.00 0.00 0.00 3.71
2874 2912 2.218115 CTCCACTCCCGACCTCCTCT 62.218 65.000 0.00 0.00 0.00 3.69
2875 2913 1.755008 CCACTCCCGACCTCCTCTC 60.755 68.421 0.00 0.00 0.00 3.20
2876 2914 1.304952 CACTCCCGACCTCCTCTCT 59.695 63.158 0.00 0.00 0.00 3.10
2877 2915 1.034838 CACTCCCGACCTCCTCTCTG 61.035 65.000 0.00 0.00 0.00 3.35
2878 2916 2.043852 TCCCGACCTCCTCTCTGC 60.044 66.667 0.00 0.00 0.00 4.26
2879 2917 2.363018 CCCGACCTCCTCTCTGCA 60.363 66.667 0.00 0.00 0.00 4.41
2880 2918 2.716017 CCCGACCTCCTCTCTGCAC 61.716 68.421 0.00 0.00 0.00 4.57
2881 2919 1.979155 CCGACCTCCTCTCTGCACA 60.979 63.158 0.00 0.00 0.00 4.57
2882 2920 1.214062 CGACCTCCTCTCTGCACAC 59.786 63.158 0.00 0.00 0.00 3.82
2883 2921 1.527433 CGACCTCCTCTCTGCACACA 61.527 60.000 0.00 0.00 0.00 3.72
2884 2922 0.037790 GACCTCCTCTCTGCACACAC 60.038 60.000 0.00 0.00 0.00 3.82
2885 2923 1.294780 CCTCCTCTCTGCACACACC 59.705 63.158 0.00 0.00 0.00 4.16
2886 2924 1.190833 CCTCCTCTCTGCACACACCT 61.191 60.000 0.00 0.00 0.00 4.00
2887 2925 0.037512 CTCCTCTCTGCACACACCTG 60.038 60.000 0.00 0.00 0.00 4.00
2888 2926 1.670406 CCTCTCTGCACACACCTGC 60.670 63.158 0.00 0.00 37.70 4.85
2889 2927 1.670406 CTCTCTGCACACACCTGCC 60.670 63.158 0.00 0.00 36.21 4.85
2890 2928 2.111669 CTCTGCACACACCTGCCA 59.888 61.111 0.00 0.00 36.21 4.92
2891 2929 1.303074 CTCTGCACACACCTGCCAT 60.303 57.895 0.00 0.00 36.21 4.40
2892 2930 1.583495 CTCTGCACACACCTGCCATG 61.583 60.000 0.00 0.00 36.21 3.66
2893 2931 2.598099 TGCACACACCTGCCATGG 60.598 61.111 7.63 7.63 36.21 3.66
2894 2932 4.060038 GCACACACCTGCCATGGC 62.060 66.667 30.54 30.54 42.35 4.40
2895 2933 3.376078 CACACACCTGCCATGGCC 61.376 66.667 33.44 16.23 41.09 5.36
2896 2934 3.583380 ACACACCTGCCATGGCCT 61.583 61.111 33.44 13.50 41.09 5.19
2897 2935 2.283388 CACACCTGCCATGGCCTT 60.283 61.111 33.44 15.02 41.09 4.35
2898 2936 2.283388 ACACCTGCCATGGCCTTG 60.283 61.111 33.44 26.70 41.09 3.61
2899 2937 2.036098 CACCTGCCATGGCCTTGA 59.964 61.111 33.44 14.41 41.09 3.02
2900 2938 2.050350 CACCTGCCATGGCCTTGAG 61.050 63.158 33.44 22.86 41.09 3.02
2901 2939 2.233566 ACCTGCCATGGCCTTGAGA 61.234 57.895 33.44 13.22 41.09 3.27
2902 2940 1.229359 CCTGCCATGGCCTTGAGAT 59.771 57.895 33.44 0.00 41.09 2.75
2903 2941 0.822532 CCTGCCATGGCCTTGAGATC 60.823 60.000 33.44 3.62 41.09 2.75
2904 2942 0.822532 CTGCCATGGCCTTGAGATCC 60.823 60.000 33.44 2.83 41.09 3.36
2905 2943 1.228228 GCCATGGCCTTGAGATCCA 59.772 57.895 27.24 0.00 34.56 3.41
2906 2944 0.396139 GCCATGGCCTTGAGATCCAA 60.396 55.000 27.24 0.00 33.04 3.53
2907 2945 1.961435 GCCATGGCCTTGAGATCCAAA 60.961 52.381 27.24 0.00 33.76 3.28
2908 2946 2.029623 CCATGGCCTTGAGATCCAAAG 58.970 52.381 19.85 0.00 33.76 2.77
2909 2947 1.407979 CATGGCCTTGAGATCCAAAGC 59.592 52.381 13.33 8.28 40.58 3.51
2911 2949 3.584947 GCCTTGAGATCCAAAGCCT 57.415 52.632 6.35 0.00 36.46 4.58
2912 2950 1.844687 GCCTTGAGATCCAAAGCCTT 58.155 50.000 6.35 0.00 36.46 4.35
2913 2951 1.475682 GCCTTGAGATCCAAAGCCTTG 59.524 52.381 6.35 0.00 36.46 3.61
2914 2952 2.800250 CCTTGAGATCCAAAGCCTTGT 58.200 47.619 0.00 0.00 33.76 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 309 1.162181 CGTCCGGATCTACGCCTACA 61.162 60.000 7.81 0.00 31.66 2.74
369 370 4.214327 CTCTTCCTCCCGGCGCTC 62.214 72.222 7.64 0.00 0.00 5.03
530 531 1.299014 GCTCTGATGCTCGACCGAG 60.299 63.158 14.45 14.45 44.56 4.63
531 532 0.463833 TAGCTCTGATGCTCGACCGA 60.464 55.000 0.00 0.00 42.97 4.69
534 535 2.159310 ACACTTAGCTCTGATGCTCGAC 60.159 50.000 0.00 0.00 42.97 4.20
549 550 0.970640 TGTCCGCAGCCTAACACTTA 59.029 50.000 0.00 0.00 0.00 2.24
664 665 4.063689 CTCACTGTTGTCAGCTTCTCAAT 58.936 43.478 0.00 0.00 44.77 2.57
738 739 0.250166 AACAGCTTACGGTCCCACAC 60.250 55.000 0.00 0.00 0.00 3.82
952 957 4.717629 TGTCAAGCTAGCGCGCGT 62.718 61.111 32.35 20.00 42.32 6.01
1125 1130 4.771356 GACGCGCCGTAGCTGTCA 62.771 66.667 5.73 0.00 41.37 3.58
1145 1150 3.542676 TGCCCGTCACCGTGAACT 61.543 61.111 1.88 0.00 0.00 3.01
1330 1340 1.298116 CGCTGCCTGCAAATCATCG 60.298 57.895 0.00 0.00 43.06 3.84
1534 1544 1.133407 GCCGTTGTTGAAGTTGGTGAA 59.867 47.619 0.00 0.00 0.00 3.18
1556 1566 1.784525 CAATAGATTCTCGCCGGTCC 58.215 55.000 1.90 0.00 0.00 4.46
1569 1579 1.441729 CTTCGAGGGGCGCAATAGA 59.558 57.895 10.83 0.00 40.61 1.98
1716 1738 3.100089 AGAAAACGTAAACCAAAACGCG 58.900 40.909 3.53 3.53 42.74 6.01
1743 1765 2.223735 GCTATCGTGGAACCATCGAGAA 60.224 50.000 17.60 10.97 34.80 2.87
1747 1769 2.154854 ATGCTATCGTGGAACCATCG 57.845 50.000 0.00 3.52 0.00 3.84
1769 1791 1.908065 AGCAAAACAAAGACGCACAC 58.092 45.000 0.00 0.00 0.00 3.82
1807 1829 6.169094 ACAGTACAAATCAGATCCTGTTCAG 58.831 40.000 0.00 0.00 32.61 3.02
1808 1830 6.114187 ACAGTACAAATCAGATCCTGTTCA 57.886 37.500 0.00 0.00 32.61 3.18
1814 1844 5.062308 GTCGTTGACAGTACAAATCAGATCC 59.938 44.000 0.00 0.00 32.09 3.36
1868 1900 9.261180 ACCAGATATAACAGATATTGTGAAACG 57.739 33.333 0.00 0.00 42.39 3.60
1889 1921 9.982651 GCTAGTATGAACTAATTTATGACCAGA 57.017 33.333 0.00 0.00 37.75 3.86
1902 1940 7.721842 AGAGATGCACTTAGCTAGTATGAACTA 59.278 37.037 0.00 0.00 45.94 2.24
1903 1941 6.549364 AGAGATGCACTTAGCTAGTATGAACT 59.451 38.462 0.00 0.00 45.94 3.01
1904 1942 6.744112 AGAGATGCACTTAGCTAGTATGAAC 58.256 40.000 0.00 0.00 45.94 3.18
1905 1943 6.968263 AGAGATGCACTTAGCTAGTATGAA 57.032 37.500 0.00 0.00 45.94 2.57
1906 1944 7.040340 GGTTAGAGATGCACTTAGCTAGTATGA 60.040 40.741 0.00 0.00 45.94 2.15
1907 1945 7.087639 GGTTAGAGATGCACTTAGCTAGTATG 58.912 42.308 0.00 0.00 45.94 2.39
1908 1946 6.209788 GGGTTAGAGATGCACTTAGCTAGTAT 59.790 42.308 0.00 0.00 45.94 2.12
1909 1947 5.535406 GGGTTAGAGATGCACTTAGCTAGTA 59.465 44.000 0.00 0.00 45.94 1.82
1910 1948 4.342665 GGGTTAGAGATGCACTTAGCTAGT 59.657 45.833 0.00 0.00 45.94 2.57
1911 1949 4.586841 AGGGTTAGAGATGCACTTAGCTAG 59.413 45.833 0.00 0.00 45.94 3.42
1928 1966 0.831288 TCCGGACGGTTTGAGGGTTA 60.831 55.000 10.90 0.00 36.47 2.85
1936 1974 2.575461 GACGGATCCGGACGGTTT 59.425 61.111 35.87 15.06 44.69 3.27
1954 1992 1.804326 GTCCGGACCGTGTGATTCG 60.804 63.158 24.75 0.00 0.00 3.34
1955 1993 1.804326 CGTCCGGACCGTGTGATTC 60.804 63.158 28.52 0.00 0.00 2.52
1956 1994 2.260434 CGTCCGGACCGTGTGATT 59.740 61.111 28.52 0.00 0.00 2.57
1957 1995 2.987547 ACGTCCGGACCGTGTGAT 60.988 61.111 28.52 5.01 37.12 3.06
1962 2000 1.884004 CAAAACACGTCCGGACCGT 60.884 57.895 28.52 24.40 39.52 4.83
1963 2001 1.824272 GACAAAACACGTCCGGACCG 61.824 60.000 28.52 23.77 0.00 4.79
1964 2002 0.810823 TGACAAAACACGTCCGGACC 60.811 55.000 28.52 11.59 32.15 4.46
1965 2003 1.193874 GATGACAAAACACGTCCGGAC 59.806 52.381 25.28 25.28 32.15 4.79
1966 2004 1.504359 GATGACAAAACACGTCCGGA 58.496 50.000 0.00 0.00 32.15 5.14
1967 2005 0.515564 GGATGACAAAACACGTCCGG 59.484 55.000 0.00 0.00 33.45 5.14
1968 2006 1.222300 TGGATGACAAAACACGTCCG 58.778 50.000 0.00 0.00 42.96 4.79
1969 2007 3.701532 TTTGGATGACAAAACACGTCC 57.298 42.857 0.00 0.00 45.59 4.79
1978 2016 4.080582 ACGGATGGAGTATTTGGATGACAA 60.081 41.667 0.00 0.00 37.28 3.18
1979 2017 3.454447 ACGGATGGAGTATTTGGATGACA 59.546 43.478 0.00 0.00 0.00 3.58
1980 2018 4.058817 GACGGATGGAGTATTTGGATGAC 58.941 47.826 0.00 0.00 0.00 3.06
1981 2019 3.071023 GGACGGATGGAGTATTTGGATGA 59.929 47.826 0.00 0.00 0.00 2.92
1982 2020 3.181455 TGGACGGATGGAGTATTTGGATG 60.181 47.826 0.00 0.00 0.00 3.51
1983 2021 3.045634 TGGACGGATGGAGTATTTGGAT 58.954 45.455 0.00 0.00 0.00 3.41
1984 2022 2.169769 GTGGACGGATGGAGTATTTGGA 59.830 50.000 0.00 0.00 0.00 3.53
1985 2023 2.561569 GTGGACGGATGGAGTATTTGG 58.438 52.381 0.00 0.00 0.00 3.28
1986 2024 2.201732 CGTGGACGGATGGAGTATTTG 58.798 52.381 0.00 0.00 35.37 2.32
1987 2025 2.596904 CGTGGACGGATGGAGTATTT 57.403 50.000 0.00 0.00 35.37 1.40
1999 2037 2.578713 CGAACCGATCCGTGGACG 60.579 66.667 0.00 0.00 39.44 4.79
2000 2038 2.202703 CCGAACCGATCCGTGGAC 60.203 66.667 0.00 0.00 0.00 4.02
2001 2039 2.361483 TCCGAACCGATCCGTGGA 60.361 61.111 0.00 0.00 0.00 4.02
2002 2040 2.202703 GTCCGAACCGATCCGTGG 60.203 66.667 0.00 0.00 0.00 4.94
2003 2041 2.578713 CGTCCGAACCGATCCGTG 60.579 66.667 0.00 0.00 0.00 4.94
2004 2042 3.044059 GACGTCCGAACCGATCCGT 62.044 63.158 3.51 0.00 0.00 4.69
2005 2043 2.277756 GACGTCCGAACCGATCCG 60.278 66.667 3.51 0.00 0.00 4.18
2006 2044 2.103736 GGACGTCCGAACCGATCC 59.896 66.667 20.85 0.00 0.00 3.36
2026 2064 4.451435 GGTTTGTTTCCGGTTTGTGAAAAA 59.549 37.500 0.00 0.00 32.68 1.94
2027 2065 3.995048 GGTTTGTTTCCGGTTTGTGAAAA 59.005 39.130 0.00 0.00 32.68 2.29
2028 2066 3.586892 GGTTTGTTTCCGGTTTGTGAAA 58.413 40.909 0.00 0.00 0.00 2.69
2029 2067 3.233684 GGTTTGTTTCCGGTTTGTGAA 57.766 42.857 0.00 0.00 0.00 3.18
2030 2068 2.943449 GGTTTGTTTCCGGTTTGTGA 57.057 45.000 0.00 0.00 0.00 3.58
2522 2560 0.108472 TCTGAAGCGATGCTCACCAG 60.108 55.000 0.00 1.15 38.25 4.00
2523 2561 0.108472 CTCTGAAGCGATGCTCACCA 60.108 55.000 0.00 0.00 38.25 4.17
2524 2562 1.427592 GCTCTGAAGCGATGCTCACC 61.428 60.000 0.00 0.00 38.25 4.02
2525 2563 2.005220 GCTCTGAAGCGATGCTCAC 58.995 57.895 0.00 0.00 38.25 3.51
2526 2564 4.509756 GCTCTGAAGCGATGCTCA 57.490 55.556 0.00 0.00 38.25 4.26
2543 2581 3.432759 CATGAATGCAGCGATGACG 57.567 52.632 4.02 0.00 42.93 4.35
2554 2592 1.022735 GCTCTGGACTGGCATGAATG 58.977 55.000 0.00 0.00 0.00 2.67
2555 2593 0.622136 TGCTCTGGACTGGCATGAAT 59.378 50.000 0.00 0.00 0.00 2.57
2556 2594 0.035725 CTGCTCTGGACTGGCATGAA 60.036 55.000 0.00 0.00 35.37 2.57
2557 2595 0.906282 TCTGCTCTGGACTGGCATGA 60.906 55.000 0.00 0.00 35.37 3.07
2558 2596 0.180642 ATCTGCTCTGGACTGGCATG 59.819 55.000 0.00 0.00 35.37 4.06
2559 2597 0.180642 CATCTGCTCTGGACTGGCAT 59.819 55.000 0.00 0.00 35.37 4.40
2560 2598 1.600638 CATCTGCTCTGGACTGGCA 59.399 57.895 0.00 0.00 34.66 4.92
2561 2599 1.818785 GCATCTGCTCTGGACTGGC 60.819 63.158 0.00 0.00 38.21 4.85
2562 2600 1.521010 CGCATCTGCTCTGGACTGG 60.521 63.158 0.09 0.00 39.32 4.00
2563 2601 0.805322 GTCGCATCTGCTCTGGACTG 60.805 60.000 0.09 0.00 39.32 3.51
2564 2602 1.515020 GTCGCATCTGCTCTGGACT 59.485 57.895 0.09 0.00 39.32 3.85
2565 2603 1.520342 GGTCGCATCTGCTCTGGAC 60.520 63.158 0.09 0.57 39.32 4.02
2566 2604 1.670949 GAGGTCGCATCTGCTCTGGA 61.671 60.000 0.09 0.00 39.32 3.86
2567 2605 1.227205 GAGGTCGCATCTGCTCTGG 60.227 63.158 0.09 0.00 39.32 3.86
2568 2606 0.248990 GAGAGGTCGCATCTGCTCTG 60.249 60.000 0.09 0.00 39.32 3.35
2569 2607 0.682532 TGAGAGGTCGCATCTGCTCT 60.683 55.000 0.09 0.00 39.32 4.09
2570 2608 0.527385 GTGAGAGGTCGCATCTGCTC 60.527 60.000 0.09 0.00 39.32 4.26
2571 2609 0.969917 AGTGAGAGGTCGCATCTGCT 60.970 55.000 0.09 0.00 39.32 4.24
2572 2610 0.741326 TAGTGAGAGGTCGCATCTGC 59.259 55.000 0.00 0.00 35.46 4.26
2573 2611 2.290367 CTCTAGTGAGAGGTCGCATCTG 59.710 54.545 0.00 0.00 44.92 2.90
2574 2612 2.571212 CTCTAGTGAGAGGTCGCATCT 58.429 52.381 0.00 0.00 44.92 2.90
2584 2622 2.723273 TCAATGCCGACTCTAGTGAGA 58.277 47.619 0.00 0.00 42.73 3.27
2585 2623 3.443037 CTTCAATGCCGACTCTAGTGAG 58.557 50.000 0.00 0.00 45.43 3.51
2586 2624 2.417379 GCTTCAATGCCGACTCTAGTGA 60.417 50.000 0.00 0.00 0.00 3.41
2587 2625 1.929836 GCTTCAATGCCGACTCTAGTG 59.070 52.381 0.00 0.00 0.00 2.74
2588 2626 1.134670 GGCTTCAATGCCGACTCTAGT 60.135 52.381 0.00 0.00 43.74 2.57
2589 2627 1.576356 GGCTTCAATGCCGACTCTAG 58.424 55.000 0.00 0.00 43.74 2.43
2590 2628 3.760693 GGCTTCAATGCCGACTCTA 57.239 52.632 0.00 0.00 43.74 2.43
2591 2629 4.625800 GGCTTCAATGCCGACTCT 57.374 55.556 0.00 0.00 43.74 3.24
2598 2636 2.126346 GGCACACGGCTTCAATGC 60.126 61.111 0.00 0.00 44.01 3.56
2599 2637 2.176546 CGGCACACGGCTTCAATG 59.823 61.111 0.00 0.00 44.01 2.82
2643 2681 3.793144 GAGAAGGCGCTTGCACCG 61.793 66.667 7.64 1.78 41.71 4.94
2644 2682 2.359230 AGAGAAGGCGCTTGCACC 60.359 61.111 7.64 0.00 41.71 5.01
2645 2683 2.394563 GGAGAGAAGGCGCTTGCAC 61.395 63.158 7.64 0.00 41.71 4.57
2646 2684 2.046892 GGAGAGAAGGCGCTTGCA 60.047 61.111 7.64 0.00 41.71 4.08
2647 2685 3.191539 CGGAGAGAAGGCGCTTGC 61.192 66.667 7.64 0.00 38.11 4.01
2648 2686 3.191539 GCGGAGAGAAGGCGCTTG 61.192 66.667 7.64 0.00 0.00 4.01
2649 2687 2.527951 AATGCGGAGAGAAGGCGCTT 62.528 55.000 7.64 0.00 0.00 4.68
2650 2688 2.914777 GAATGCGGAGAGAAGGCGCT 62.915 60.000 7.64 0.00 0.00 5.92
2651 2689 2.512515 AATGCGGAGAGAAGGCGC 60.513 61.111 0.00 0.00 0.00 6.53
2652 2690 0.740868 TTGAATGCGGAGAGAAGGCG 60.741 55.000 0.00 0.00 0.00 5.52
2653 2691 1.131315 GTTTGAATGCGGAGAGAAGGC 59.869 52.381 0.00 0.00 0.00 4.35
2654 2692 1.394917 CGTTTGAATGCGGAGAGAAGG 59.605 52.381 0.00 0.00 0.00 3.46
2655 2693 2.092838 GTCGTTTGAATGCGGAGAGAAG 59.907 50.000 0.00 0.00 0.00 2.85
2656 2694 2.066262 GTCGTTTGAATGCGGAGAGAA 58.934 47.619 0.00 0.00 0.00 2.87
2657 2695 1.000394 TGTCGTTTGAATGCGGAGAGA 60.000 47.619 0.00 0.00 0.00 3.10
2658 2696 1.126846 GTGTCGTTTGAATGCGGAGAG 59.873 52.381 0.00 0.00 0.00 3.20
2659 2697 1.144969 GTGTCGTTTGAATGCGGAGA 58.855 50.000 0.00 0.00 0.00 3.71
2660 2698 0.165944 GGTGTCGTTTGAATGCGGAG 59.834 55.000 0.00 0.00 0.00 4.63
2661 2699 1.231958 GGGTGTCGTTTGAATGCGGA 61.232 55.000 0.00 0.00 0.00 5.54
2662 2700 1.209127 GGGTGTCGTTTGAATGCGG 59.791 57.895 0.00 0.00 0.00 5.69
2663 2701 1.154488 CGGGTGTCGTTTGAATGCG 60.154 57.895 0.00 0.00 0.00 4.73
2664 2702 4.838959 CGGGTGTCGTTTGAATGC 57.161 55.556 0.00 0.00 0.00 3.56
2674 2712 1.416373 GAGACGAAAAGACGGGTGTC 58.584 55.000 0.00 0.00 45.86 3.67
2675 2713 0.033090 GGAGACGAAAAGACGGGTGT 59.967 55.000 0.00 0.00 37.61 4.16
2676 2714 0.669625 GGGAGACGAAAAGACGGGTG 60.670 60.000 0.00 0.00 37.61 4.61
2677 2715 0.830866 AGGGAGACGAAAAGACGGGT 60.831 55.000 0.00 0.00 37.61 5.28
2678 2716 0.108756 GAGGGAGACGAAAAGACGGG 60.109 60.000 0.00 0.00 37.61 5.28
2679 2717 0.108756 GGAGGGAGACGAAAAGACGG 60.109 60.000 0.00 0.00 37.61 4.79
2680 2718 0.889306 AGGAGGGAGACGAAAAGACG 59.111 55.000 0.00 0.00 39.31 4.18
2681 2719 3.404224 AAAGGAGGGAGACGAAAAGAC 57.596 47.619 0.00 0.00 0.00 3.01
2682 2720 5.163280 TGTTTAAAGGAGGGAGACGAAAAGA 60.163 40.000 0.00 0.00 0.00 2.52
2683 2721 5.061179 TGTTTAAAGGAGGGAGACGAAAAG 58.939 41.667 0.00 0.00 0.00 2.27
2684 2722 5.038651 TGTTTAAAGGAGGGAGACGAAAA 57.961 39.130 0.00 0.00 0.00 2.29
2685 2723 4.693042 TGTTTAAAGGAGGGAGACGAAA 57.307 40.909 0.00 0.00 0.00 3.46
2686 2724 4.638304 CTTGTTTAAAGGAGGGAGACGAA 58.362 43.478 0.00 0.00 0.00 3.85
2687 2725 3.556423 GCTTGTTTAAAGGAGGGAGACGA 60.556 47.826 0.00 0.00 0.00 4.20
2688 2726 2.742589 GCTTGTTTAAAGGAGGGAGACG 59.257 50.000 0.00 0.00 0.00 4.18
2689 2727 2.742589 CGCTTGTTTAAAGGAGGGAGAC 59.257 50.000 8.36 0.00 0.00 3.36
2690 2728 2.370849 ACGCTTGTTTAAAGGAGGGAGA 59.629 45.455 16.79 0.00 0.00 3.71
2691 2729 2.484264 CACGCTTGTTTAAAGGAGGGAG 59.516 50.000 16.79 8.81 0.00 4.30
2692 2730 2.500229 CACGCTTGTTTAAAGGAGGGA 58.500 47.619 16.79 0.00 0.00 4.20
2693 2731 1.539827 CCACGCTTGTTTAAAGGAGGG 59.460 52.381 11.17 11.17 0.00 4.30
2694 2732 2.227194 ACCACGCTTGTTTAAAGGAGG 58.773 47.619 0.00 0.00 0.00 4.30
2695 2733 3.628017 CAACCACGCTTGTTTAAAGGAG 58.372 45.455 0.00 0.00 0.00 3.69
2696 2734 2.223618 GCAACCACGCTTGTTTAAAGGA 60.224 45.455 0.00 0.00 0.00 3.36
2697 2735 2.124122 GCAACCACGCTTGTTTAAAGG 58.876 47.619 0.00 0.00 0.00 3.11
2698 2736 2.124122 GGCAACCACGCTTGTTTAAAG 58.876 47.619 0.00 0.00 0.00 1.85
2699 2737 1.476891 TGGCAACCACGCTTGTTTAAA 59.523 42.857 0.00 0.00 0.00 1.52
2700 2738 1.103803 TGGCAACCACGCTTGTTTAA 58.896 45.000 0.00 0.00 0.00 1.52
2701 2739 1.066303 CTTGGCAACCACGCTTGTTTA 59.934 47.619 0.00 0.00 30.78 2.01
2702 2740 0.179113 CTTGGCAACCACGCTTGTTT 60.179 50.000 0.00 0.00 30.78 2.83
2703 2741 1.437160 CTTGGCAACCACGCTTGTT 59.563 52.632 0.00 0.00 30.78 2.83
2704 2742 2.489275 CCTTGGCAACCACGCTTGT 61.489 57.895 0.00 0.00 30.78 3.16
2705 2743 1.733402 TTCCTTGGCAACCACGCTTG 61.733 55.000 0.00 0.00 30.78 4.01
2706 2744 1.454847 TTCCTTGGCAACCACGCTT 60.455 52.632 0.00 0.00 30.78 4.68
2707 2745 2.193536 GTTCCTTGGCAACCACGCT 61.194 57.895 0.00 0.00 30.78 5.07
2708 2746 2.335011 GTTCCTTGGCAACCACGC 59.665 61.111 0.00 0.00 30.78 5.34
2709 2747 0.250553 TAGGTTCCTTGGCAACCACG 60.251 55.000 8.68 0.00 45.20 4.94
2710 2748 1.202891 AGTAGGTTCCTTGGCAACCAC 60.203 52.381 8.68 5.10 45.20 4.16
2711 2749 1.073284 GAGTAGGTTCCTTGGCAACCA 59.927 52.381 8.68 0.00 45.20 3.67
2712 2750 1.351350 AGAGTAGGTTCCTTGGCAACC 59.649 52.381 0.00 0.00 43.38 3.77
2713 2751 2.038557 TCAGAGTAGGTTCCTTGGCAAC 59.961 50.000 0.00 0.00 0.00 4.17
2714 2752 2.038557 GTCAGAGTAGGTTCCTTGGCAA 59.961 50.000 0.00 0.00 0.00 4.52
2715 2753 1.623811 GTCAGAGTAGGTTCCTTGGCA 59.376 52.381 0.00 0.00 0.00 4.92
2716 2754 1.404315 CGTCAGAGTAGGTTCCTTGGC 60.404 57.143 0.00 0.00 0.00 4.52
2717 2755 1.404315 GCGTCAGAGTAGGTTCCTTGG 60.404 57.143 0.00 0.00 0.00 3.61
2718 2756 1.404315 GGCGTCAGAGTAGGTTCCTTG 60.404 57.143 0.00 0.00 0.00 3.61
2719 2757 0.896226 GGCGTCAGAGTAGGTTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
2720 2758 0.971447 GGGCGTCAGAGTAGGTTCCT 60.971 60.000 0.00 0.00 0.00 3.36
2721 2759 1.255667 TGGGCGTCAGAGTAGGTTCC 61.256 60.000 0.00 0.00 0.00 3.62
2722 2760 0.108756 GTGGGCGTCAGAGTAGGTTC 60.109 60.000 0.00 0.00 0.00 3.62
2723 2761 0.830444 TGTGGGCGTCAGAGTAGGTT 60.830 55.000 0.00 0.00 0.00 3.50
2724 2762 0.614979 ATGTGGGCGTCAGAGTAGGT 60.615 55.000 0.00 0.00 0.00 3.08
2725 2763 0.179100 CATGTGGGCGTCAGAGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
2726 2764 0.807667 GCATGTGGGCGTCAGAGTAG 60.808 60.000 0.00 0.00 0.00 2.57
2727 2765 1.218047 GCATGTGGGCGTCAGAGTA 59.782 57.895 0.00 0.00 0.00 2.59
2728 2766 2.046892 GCATGTGGGCGTCAGAGT 60.047 61.111 0.00 0.00 0.00 3.24
2736 2774 1.644786 GGTAGTGTTCGCATGTGGGC 61.645 60.000 6.39 0.31 0.00 5.36
2737 2775 1.024579 GGGTAGTGTTCGCATGTGGG 61.025 60.000 6.39 0.00 0.00 4.61
2738 2776 1.358725 CGGGTAGTGTTCGCATGTGG 61.359 60.000 6.39 0.00 0.00 4.17
2739 2777 0.669318 ACGGGTAGTGTTCGCATGTG 60.669 55.000 0.00 0.00 0.00 3.21
2740 2778 0.389426 GACGGGTAGTGTTCGCATGT 60.389 55.000 0.00 0.00 0.00 3.21
2741 2779 1.082117 GGACGGGTAGTGTTCGCATG 61.082 60.000 0.00 0.00 0.00 4.06
2742 2780 1.217244 GGACGGGTAGTGTTCGCAT 59.783 57.895 0.00 0.00 0.00 4.73
2743 2781 2.652530 GGACGGGTAGTGTTCGCA 59.347 61.111 0.00 0.00 0.00 5.10
2744 2782 2.505557 CGGACGGGTAGTGTTCGC 60.506 66.667 0.00 0.00 0.00 4.70
2745 2783 1.154150 GACGGACGGGTAGTGTTCG 60.154 63.158 0.00 0.00 0.00 3.95
2746 2784 1.213799 GGACGGACGGGTAGTGTTC 59.786 63.158 0.00 0.00 0.00 3.18
2747 2785 2.629656 CGGACGGACGGGTAGTGTT 61.630 63.158 0.00 0.00 0.00 3.32
2748 2786 3.058160 CGGACGGACGGGTAGTGT 61.058 66.667 0.00 0.00 0.00 3.55
2749 2787 3.044059 GACGGACGGACGGGTAGTG 62.044 68.421 6.00 0.00 38.39 2.74
2750 2788 2.747855 GACGGACGGACGGGTAGT 60.748 66.667 6.00 0.00 38.39 2.73
2751 2789 2.437359 AGACGGACGGACGGGTAG 60.437 66.667 6.00 0.00 38.39 3.18
2752 2790 2.747460 CAGACGGACGGACGGGTA 60.747 66.667 6.00 0.00 38.39 3.69
2753 2791 4.648626 TCAGACGGACGGACGGGT 62.649 66.667 6.00 0.00 38.39 5.28
2754 2792 4.112341 GTCAGACGGACGGACGGG 62.112 72.222 6.00 0.00 36.65 5.28
2771 2809 1.280444 GGGTGTTTTACGTGTGCCG 59.720 57.895 0.00 0.00 44.03 5.69
2772 2810 1.655885 GGGGTGTTTTACGTGTGCC 59.344 57.895 0.00 0.00 0.00 5.01
2773 2811 1.280444 CGGGGTGTTTTACGTGTGC 59.720 57.895 0.00 0.00 0.00 4.57
2774 2812 1.280444 GCGGGGTGTTTTACGTGTG 59.720 57.895 0.00 0.00 0.00 3.82
2775 2813 1.893335 GGCGGGGTGTTTTACGTGT 60.893 57.895 0.00 0.00 0.00 4.49
2776 2814 2.948323 GGCGGGGTGTTTTACGTG 59.052 61.111 0.00 0.00 0.00 4.49
2777 2815 2.665854 CGGCGGGGTGTTTTACGT 60.666 61.111 0.00 0.00 0.00 3.57
2778 2816 4.092652 GCGGCGGGGTGTTTTACG 62.093 66.667 9.78 0.00 0.00 3.18
2779 2817 2.263021 AAGCGGCGGGGTGTTTTAC 61.263 57.895 9.78 0.00 0.00 2.01
2780 2818 2.113562 AAGCGGCGGGGTGTTTTA 59.886 55.556 9.78 0.00 0.00 1.52
2781 2819 3.601685 CAAGCGGCGGGGTGTTTT 61.602 61.111 9.78 0.00 0.00 2.43
2795 2833 2.825836 GACGGATGCCTGGCCAAG 60.826 66.667 17.53 0.23 0.00 3.61
2796 2834 3.329889 AGACGGATGCCTGGCCAA 61.330 61.111 17.53 0.00 0.00 4.52
2797 2835 4.100084 CAGACGGATGCCTGGCCA 62.100 66.667 17.53 4.71 0.00 5.36
2804 2842 5.207768 CACATTTAAATAGCAGACGGATGC 58.792 41.667 0.00 6.03 46.88 3.91
2805 2843 5.751680 CCACATTTAAATAGCAGACGGATG 58.248 41.667 0.00 0.00 0.00 3.51
2806 2844 4.275936 GCCACATTTAAATAGCAGACGGAT 59.724 41.667 0.00 0.00 0.00 4.18
2807 2845 3.625764 GCCACATTTAAATAGCAGACGGA 59.374 43.478 0.00 0.00 0.00 4.69
2808 2846 3.243068 GGCCACATTTAAATAGCAGACGG 60.243 47.826 15.10 6.03 0.00 4.79
2809 2847 3.376859 TGGCCACATTTAAATAGCAGACG 59.623 43.478 0.00 0.30 0.00 4.18
2810 2848 4.981806 TGGCCACATTTAAATAGCAGAC 57.018 40.909 0.00 3.53 0.00 3.51
2811 2849 4.142182 GCTTGGCCACATTTAAATAGCAGA 60.142 41.667 3.88 5.82 0.00 4.26
2812 2850 4.114794 GCTTGGCCACATTTAAATAGCAG 58.885 43.478 3.88 0.00 0.00 4.24
2813 2851 4.122143 GCTTGGCCACATTTAAATAGCA 57.878 40.909 3.88 0.00 0.00 3.49
2845 2883 4.436998 GAGTGGAGGTGGGACGCG 62.437 72.222 3.53 3.53 41.51 6.01
2846 2884 4.083862 GGAGTGGAGGTGGGACGC 62.084 72.222 0.00 0.00 38.67 5.19
2847 2885 3.391382 GGGAGTGGAGGTGGGACG 61.391 72.222 0.00 0.00 0.00 4.79
2848 2886 3.391382 CGGGAGTGGAGGTGGGAC 61.391 72.222 0.00 0.00 0.00 4.46
2849 2887 3.596799 TCGGGAGTGGAGGTGGGA 61.597 66.667 0.00 0.00 0.00 4.37
2850 2888 3.391382 GTCGGGAGTGGAGGTGGG 61.391 72.222 0.00 0.00 0.00 4.61
2851 2889 3.391382 GGTCGGGAGTGGAGGTGG 61.391 72.222 0.00 0.00 0.00 4.61
2852 2890 2.283966 AGGTCGGGAGTGGAGGTG 60.284 66.667 0.00 0.00 0.00 4.00
2853 2891 2.037527 GAGGTCGGGAGTGGAGGT 59.962 66.667 0.00 0.00 0.00 3.85
2854 2892 2.760385 GGAGGTCGGGAGTGGAGG 60.760 72.222 0.00 0.00 0.00 4.30
2855 2893 1.755008 GAGGAGGTCGGGAGTGGAG 60.755 68.421 0.00 0.00 0.00 3.86
2856 2894 2.212794 GAGAGGAGGTCGGGAGTGGA 62.213 65.000 0.00 0.00 0.00 4.02
2857 2895 1.755008 GAGAGGAGGTCGGGAGTGG 60.755 68.421 0.00 0.00 0.00 4.00
2858 2896 1.034838 CAGAGAGGAGGTCGGGAGTG 61.035 65.000 0.00 0.00 0.00 3.51
2859 2897 1.304952 CAGAGAGGAGGTCGGGAGT 59.695 63.158 0.00 0.00 0.00 3.85
2860 2898 2.124693 GCAGAGAGGAGGTCGGGAG 61.125 68.421 0.00 0.00 0.00 4.30
2861 2899 2.043852 GCAGAGAGGAGGTCGGGA 60.044 66.667 0.00 0.00 0.00 5.14
2862 2900 2.363018 TGCAGAGAGGAGGTCGGG 60.363 66.667 0.00 0.00 0.00 5.14
2863 2901 1.979155 TGTGCAGAGAGGAGGTCGG 60.979 63.158 0.00 0.00 0.00 4.79
2864 2902 1.214062 GTGTGCAGAGAGGAGGTCG 59.786 63.158 0.00 0.00 0.00 4.79
2865 2903 0.037790 GTGTGTGCAGAGAGGAGGTC 60.038 60.000 0.00 0.00 0.00 3.85
2866 2904 1.476007 GGTGTGTGCAGAGAGGAGGT 61.476 60.000 0.00 0.00 0.00 3.85
2867 2905 1.190833 AGGTGTGTGCAGAGAGGAGG 61.191 60.000 0.00 0.00 0.00 4.30
2868 2906 0.037512 CAGGTGTGTGCAGAGAGGAG 60.038 60.000 0.00 0.00 0.00 3.69
2869 2907 2.052779 CAGGTGTGTGCAGAGAGGA 58.947 57.895 0.00 0.00 0.00 3.71
2870 2908 1.670406 GCAGGTGTGTGCAGAGAGG 60.670 63.158 0.00 0.00 43.41 3.69
2871 2909 1.670406 GGCAGGTGTGTGCAGAGAG 60.670 63.158 0.00 0.00 45.93 3.20
2872 2910 1.771783 ATGGCAGGTGTGTGCAGAGA 61.772 55.000 0.00 0.00 45.93 3.10
2873 2911 1.303074 ATGGCAGGTGTGTGCAGAG 60.303 57.895 0.00 0.00 45.93 3.35
2874 2912 1.601477 CATGGCAGGTGTGTGCAGA 60.601 57.895 0.00 0.00 45.93 4.26
2875 2913 2.632544 CCATGGCAGGTGTGTGCAG 61.633 63.158 0.00 0.00 45.93 4.41
2876 2914 2.598099 CCATGGCAGGTGTGTGCA 60.598 61.111 0.00 0.00 45.93 4.57
2877 2915 4.060038 GCCATGGCAGGTGTGTGC 62.060 66.667 32.08 0.00 43.19 4.57
2878 2916 3.376078 GGCCATGGCAGGTGTGTG 61.376 66.667 36.56 0.00 44.11 3.82
2879 2917 3.150903 AAGGCCATGGCAGGTGTGT 62.151 57.895 36.56 11.21 44.11 3.72
2880 2918 2.283388 AAGGCCATGGCAGGTGTG 60.283 61.111 36.56 0.00 44.11 3.82
2881 2919 2.283388 CAAGGCCATGGCAGGTGT 60.283 61.111 36.56 14.46 44.11 4.16
2882 2920 2.036098 TCAAGGCCATGGCAGGTG 59.964 61.111 36.56 28.11 44.11 4.00
2883 2921 1.578215 ATCTCAAGGCCATGGCAGGT 61.578 55.000 36.56 19.86 44.11 4.00
2884 2922 0.822532 GATCTCAAGGCCATGGCAGG 60.823 60.000 36.56 24.35 44.11 4.85
2885 2923 0.822532 GGATCTCAAGGCCATGGCAG 60.823 60.000 36.56 25.00 44.11 4.85
2886 2924 1.228228 GGATCTCAAGGCCATGGCA 59.772 57.895 36.56 16.94 44.11 4.92
2887 2925 0.396139 TTGGATCTCAAGGCCATGGC 60.396 55.000 29.47 29.47 41.06 4.40
2888 2926 2.029623 CTTTGGATCTCAAGGCCATGG 58.970 52.381 7.63 7.63 36.62 3.66
2894 2932 2.800250 ACAAGGCTTTGGATCTCAAGG 58.200 47.619 13.65 0.00 38.66 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.