Multiple sequence alignment - TraesCS1B01G219900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G219900 chr1B 100.000 3819 0 0 1 3819 397051073 397054891 0.000000e+00 7053
1 TraesCS1B01G219900 chr1B 83.880 701 58 22 1306 1967 48108606 48109290 5.420000e-173 617
2 TraesCS1B01G219900 chr1A 91.383 3052 165 45 831 3819 368797439 368800455 0.000000e+00 4089
3 TraesCS1B01G219900 chr1A 79.134 508 89 10 61 555 479033377 479033880 6.110000e-88 335
4 TraesCS1B01G219900 chr1D 91.819 2567 125 35 841 3352 295535877 295538413 0.000000e+00 3498
5 TraesCS1B01G219900 chr1D 88.411 535 35 11 3293 3819 295538412 295538927 1.510000e-173 619
6 TraesCS1B01G219900 chr1D 80.231 607 99 15 30 621 472292504 472291904 1.630000e-118 436
7 TraesCS1B01G219900 chrUn 84.268 731 66 22 1306 2001 82063789 82064505 0.000000e+00 667
8 TraesCS1B01G219900 chrUn 84.268 731 66 22 1306 2001 377313350 377314066 0.000000e+00 667
9 TraesCS1B01G219900 chrUn 82.930 703 59 27 1309 1967 341713458 341712773 9.200000e-161 577
10 TraesCS1B01G219900 chrUn 79.579 475 85 6 169 632 269434966 269435439 2.840000e-86 329
11 TraesCS1B01G219900 chr7A 84.341 728 65 22 1309 2001 14509143 14508430 0.000000e+00 667
12 TraesCS1B01G219900 chr7A 83.791 728 64 24 1309 2001 64563735 64563027 3.220000e-180 641
13 TraesCS1B01G219900 chr7A 81.090 587 100 7 63 638 679050209 679049623 3.480000e-125 459
14 TraesCS1B01G219900 chr5D 84.476 715 62 21 1320 2001 41587988 41587290 0.000000e+00 660
15 TraesCS1B01G219900 chr2A 84.110 730 63 24 1309 2001 19604514 19603801 0.000000e+00 656
16 TraesCS1B01G219900 chr2A 76.739 460 98 4 30 483 167377371 167377827 8.190000e-62 248
17 TraesCS1B01G219900 chr6B 83.642 703 67 18 1306 1969 244812858 244813551 5.420000e-173 617
18 TraesCS1B01G219900 chr6B 77.796 599 114 14 51 634 585347367 585346773 6.070000e-93 351
19 TraesCS1B01G219900 chr7B 83.003 706 58 24 1309 1967 720575558 720574868 1.980000e-162 582
20 TraesCS1B01G219900 chr3A 80.301 599 99 17 51 641 468613227 468612640 5.860000e-118 435
21 TraesCS1B01G219900 chr2D 80.268 598 99 10 51 635 131775640 131775049 2.110000e-117 433
22 TraesCS1B01G219900 chr2D 78.753 433 84 4 61 488 157404692 157405121 2.250000e-72 283
23 TraesCS1B01G219900 chr6A 78.713 606 114 12 41 638 538026648 538026050 1.290000e-104 390
24 TraesCS1B01G219900 chr4D 79.579 475 85 6 169 632 266702211 266702684 2.840000e-86 329
25 TraesCS1B01G219900 chr3B 77.196 592 112 14 61 638 762311707 762312289 1.320000e-84 324
26 TraesCS1B01G219900 chr5B 77.193 513 105 9 41 547 527487231 527487737 4.830000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G219900 chr1B 397051073 397054891 3818 False 7053.0 7053 100.000 1 3819 1 chr1B.!!$F2 3818
1 TraesCS1B01G219900 chr1B 48108606 48109290 684 False 617.0 617 83.880 1306 1967 1 chr1B.!!$F1 661
2 TraesCS1B01G219900 chr1A 368797439 368800455 3016 False 4089.0 4089 91.383 831 3819 1 chr1A.!!$F1 2988
3 TraesCS1B01G219900 chr1A 479033377 479033880 503 False 335.0 335 79.134 61 555 1 chr1A.!!$F2 494
4 TraesCS1B01G219900 chr1D 295535877 295538927 3050 False 2058.5 3498 90.115 841 3819 2 chr1D.!!$F1 2978
5 TraesCS1B01G219900 chr1D 472291904 472292504 600 True 436.0 436 80.231 30 621 1 chr1D.!!$R1 591
6 TraesCS1B01G219900 chrUn 82063789 82064505 716 False 667.0 667 84.268 1306 2001 1 chrUn.!!$F1 695
7 TraesCS1B01G219900 chrUn 377313350 377314066 716 False 667.0 667 84.268 1306 2001 1 chrUn.!!$F3 695
8 TraesCS1B01G219900 chrUn 341712773 341713458 685 True 577.0 577 82.930 1309 1967 1 chrUn.!!$R1 658
9 TraesCS1B01G219900 chr7A 14508430 14509143 713 True 667.0 667 84.341 1309 2001 1 chr7A.!!$R1 692
10 TraesCS1B01G219900 chr7A 64563027 64563735 708 True 641.0 641 83.791 1309 2001 1 chr7A.!!$R2 692
11 TraesCS1B01G219900 chr7A 679049623 679050209 586 True 459.0 459 81.090 63 638 1 chr7A.!!$R3 575
12 TraesCS1B01G219900 chr5D 41587290 41587988 698 True 660.0 660 84.476 1320 2001 1 chr5D.!!$R1 681
13 TraesCS1B01G219900 chr2A 19603801 19604514 713 True 656.0 656 84.110 1309 2001 1 chr2A.!!$R1 692
14 TraesCS1B01G219900 chr6B 244812858 244813551 693 False 617.0 617 83.642 1306 1969 1 chr6B.!!$F1 663
15 TraesCS1B01G219900 chr6B 585346773 585347367 594 True 351.0 351 77.796 51 634 1 chr6B.!!$R1 583
16 TraesCS1B01G219900 chr7B 720574868 720575558 690 True 582.0 582 83.003 1309 1967 1 chr7B.!!$R1 658
17 TraesCS1B01G219900 chr3A 468612640 468613227 587 True 435.0 435 80.301 51 641 1 chr3A.!!$R1 590
18 TraesCS1B01G219900 chr2D 131775049 131775640 591 True 433.0 433 80.268 51 635 1 chr2D.!!$R1 584
19 TraesCS1B01G219900 chr6A 538026050 538026648 598 True 390.0 390 78.713 41 638 1 chr6A.!!$R1 597
20 TraesCS1B01G219900 chr3B 762311707 762312289 582 False 324.0 324 77.196 61 638 1 chr3B.!!$F1 577
21 TraesCS1B01G219900 chr5B 527487231 527487737 506 False 289.0 289 77.193 41 547 1 chr5B.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 538 0.028902 GCCGTCACACAACTTCAACC 59.971 55.0 0.00 0.0 0.00 3.77 F
600 636 0.037697 CCAAAGTCCGTCGGTGATGA 60.038 55.0 11.88 0.0 0.00 2.92 F
602 638 0.246635 AAAGTCCGTCGGTGATGAGG 59.753 55.0 11.88 0.0 0.00 3.86 F
2057 2235 0.106521 ACCTGGCATGTTTTTGCACC 59.893 50.0 0.00 0.0 44.59 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2201 0.247736 CAGGTAGACTTTGGAGCGCT 59.752 55.0 11.27 11.27 0.00 5.92 R
2026 2204 0.324943 TGCCAGGTAGACTTTGGAGC 59.675 55.0 7.61 0.00 33.76 4.70 R
2485 2665 1.160137 GCACAGGAGCTGTAACTTGG 58.840 55.0 0.00 0.00 43.43 3.61 R
3649 3961 0.388649 CGACGAGGAGGGTGTTCTTG 60.389 60.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 61 8.892887 TTGCAACAAAACTTTCAAATTCATTC 57.107 26.923 0.00 0.00 0.00 2.67
59 63 8.728833 TGCAACAAAACTTTCAAATTCATTCTT 58.271 25.926 0.00 0.00 0.00 2.52
80 87 7.615582 TCTTAATCATGGCAGTACAAAGAAG 57.384 36.000 0.00 0.00 0.00 2.85
117 125 4.503714 AATTACAATGAGGTCCGTGGAT 57.496 40.909 0.00 0.00 0.00 3.41
143 151 1.945776 GCGACGACTACAAGCACTGC 61.946 60.000 0.00 0.00 0.00 4.40
224 236 9.193806 ACCTTATTGTAGTAGATAGTCGGAAAA 57.806 33.333 0.00 0.00 0.00 2.29
245 258 1.837439 TCGTCATGCTAAGACCCCATT 59.163 47.619 0.00 0.00 32.41 3.16
249 262 2.580322 TCATGCTAAGACCCCATTGGAA 59.420 45.455 3.62 0.00 38.00 3.53
268 281 3.248602 GGAACAACACACAAGAGCAGTAG 59.751 47.826 0.00 0.00 0.00 2.57
296 309 6.464222 TCACCGATGAAGAAAGTTGTAGATT 58.536 36.000 0.00 0.00 0.00 2.40
330 343 2.683867 TGTGTAAACACCCAAACGAAGG 59.316 45.455 10.58 0.00 45.88 3.46
494 530 4.673298 ATCGCCGCCGTCACACAA 62.673 61.111 0.00 0.00 35.54 3.33
497 533 3.276846 GCCGCCGTCACACAACTT 61.277 61.111 0.00 0.00 0.00 2.66
498 534 2.935955 CCGCCGTCACACAACTTC 59.064 61.111 0.00 0.00 0.00 3.01
499 535 1.885388 CCGCCGTCACACAACTTCA 60.885 57.895 0.00 0.00 0.00 3.02
500 536 1.433053 CCGCCGTCACACAACTTCAA 61.433 55.000 0.00 0.00 0.00 2.69
501 537 0.315869 CGCCGTCACACAACTTCAAC 60.316 55.000 0.00 0.00 0.00 3.18
502 538 0.028902 GCCGTCACACAACTTCAACC 59.971 55.000 0.00 0.00 0.00 3.77
503 539 1.374560 CCGTCACACAACTTCAACCA 58.625 50.000 0.00 0.00 0.00 3.67
504 540 1.740585 CCGTCACACAACTTCAACCAA 59.259 47.619 0.00 0.00 0.00 3.67
505 541 2.223249 CCGTCACACAACTTCAACCAAG 60.223 50.000 0.00 0.00 38.21 3.61
506 542 2.675844 CGTCACACAACTTCAACCAAGA 59.324 45.455 0.00 0.00 35.82 3.02
507 543 3.485216 CGTCACACAACTTCAACCAAGAC 60.485 47.826 0.00 0.00 35.82 3.01
508 544 2.675844 TCACACAACTTCAACCAAGACG 59.324 45.455 0.00 0.00 35.82 4.18
509 545 2.675844 CACACAACTTCAACCAAGACGA 59.324 45.455 0.00 0.00 35.82 4.20
510 546 3.312421 CACACAACTTCAACCAAGACGAT 59.688 43.478 0.00 0.00 35.82 3.73
511 547 3.312421 ACACAACTTCAACCAAGACGATG 59.688 43.478 0.00 0.00 35.82 3.84
512 548 3.559655 CACAACTTCAACCAAGACGATGA 59.440 43.478 0.00 0.00 35.82 2.92
513 549 4.035091 CACAACTTCAACCAAGACGATGAA 59.965 41.667 0.00 0.00 35.82 2.57
514 550 4.638421 ACAACTTCAACCAAGACGATGAAA 59.362 37.500 0.00 0.00 35.82 2.69
515 551 4.813296 ACTTCAACCAAGACGATGAAAC 57.187 40.909 0.00 0.00 35.82 2.78
516 552 4.451900 ACTTCAACCAAGACGATGAAACT 58.548 39.130 0.00 0.00 35.82 2.66
517 553 5.607477 ACTTCAACCAAGACGATGAAACTA 58.393 37.500 0.00 0.00 35.82 2.24
518 554 6.053005 ACTTCAACCAAGACGATGAAACTAA 58.947 36.000 0.00 0.00 35.82 2.24
519 555 5.917541 TCAACCAAGACGATGAAACTAAC 57.082 39.130 0.00 0.00 0.00 2.34
520 556 5.361427 TCAACCAAGACGATGAAACTAACA 58.639 37.500 0.00 0.00 0.00 2.41
521 557 5.818336 TCAACCAAGACGATGAAACTAACAA 59.182 36.000 0.00 0.00 0.00 2.83
522 558 5.924475 ACCAAGACGATGAAACTAACAAG 57.076 39.130 0.00 0.00 0.00 3.16
523 559 5.607477 ACCAAGACGATGAAACTAACAAGA 58.393 37.500 0.00 0.00 0.00 3.02
524 560 6.053005 ACCAAGACGATGAAACTAACAAGAA 58.947 36.000 0.00 0.00 0.00 2.52
525 561 6.018180 ACCAAGACGATGAAACTAACAAGAAC 60.018 38.462 0.00 0.00 0.00 3.01
526 562 5.824243 AGACGATGAAACTAACAAGAACG 57.176 39.130 0.00 0.00 0.00 3.95
527 563 5.526115 AGACGATGAAACTAACAAGAACGA 58.474 37.500 0.00 0.00 0.00 3.85
528 564 5.629849 AGACGATGAAACTAACAAGAACGAG 59.370 40.000 0.00 0.00 0.00 4.18
529 565 5.526115 ACGATGAAACTAACAAGAACGAGA 58.474 37.500 0.00 0.00 0.00 4.04
530 566 5.981315 ACGATGAAACTAACAAGAACGAGAA 59.019 36.000 0.00 0.00 0.00 2.87
531 567 6.074463 ACGATGAAACTAACAAGAACGAGAAC 60.074 38.462 0.00 0.00 0.00 3.01
532 568 5.630896 TGAAACTAACAAGAACGAGAACG 57.369 39.130 0.00 0.00 45.75 3.95
533 569 4.026310 TGAAACTAACAAGAACGAGAACGC 60.026 41.667 0.00 0.00 43.96 4.84
534 570 2.049228 ACTAACAAGAACGAGAACGCG 58.951 47.619 3.53 3.53 43.96 6.01
535 571 1.385743 CTAACAAGAACGAGAACGCGG 59.614 52.381 12.47 0.00 43.96 6.46
536 572 0.529119 AACAAGAACGAGAACGCGGT 60.529 50.000 12.47 1.91 43.96 5.68
539 575 3.751470 GAACGAGAACGCGGTCTC 58.249 61.111 38.12 38.12 44.21 3.36
540 576 1.209640 GAACGAGAACGCGGTCTCT 59.790 57.895 41.54 29.65 44.21 3.10
541 577 0.793853 GAACGAGAACGCGGTCTCTC 60.794 60.000 41.54 32.14 44.21 3.20
542 578 2.100603 CGAGAACGCGGTCTCTCC 59.899 66.667 41.54 23.95 41.69 3.71
543 579 2.490685 GAGAACGCGGTCTCTCCC 59.509 66.667 39.76 19.91 40.83 4.30
544 580 2.282958 AGAACGCGGTCTCTCCCA 60.283 61.111 23.63 0.00 0.00 4.37
545 581 2.126031 GAACGCGGTCTCTCCCAC 60.126 66.667 18.88 0.00 0.00 4.61
546 582 3.644399 GAACGCGGTCTCTCCCACC 62.644 68.421 18.88 0.00 0.00 4.61
571 607 2.189784 GCCCGAGGCCCTCTAAAC 59.810 66.667 9.52 0.00 44.06 2.01
572 608 2.908796 CCCGAGGCCCTCTAAACC 59.091 66.667 9.52 0.00 0.00 3.27
573 609 1.689582 CCCGAGGCCCTCTAAACCT 60.690 63.158 9.52 0.00 36.19 3.50
574 610 1.687297 CCCGAGGCCCTCTAAACCTC 61.687 65.000 9.52 0.00 45.44 3.85
575 611 1.687297 CCGAGGCCCTCTAAACCTCC 61.687 65.000 9.52 0.00 46.03 4.30
576 612 0.976073 CGAGGCCCTCTAAACCTCCA 60.976 60.000 9.52 0.00 46.03 3.86
577 613 1.512735 GAGGCCCTCTAAACCTCCAT 58.487 55.000 2.64 0.00 43.54 3.41
578 614 1.141858 GAGGCCCTCTAAACCTCCATG 59.858 57.143 2.64 0.00 43.54 3.66
579 615 0.183731 GGCCCTCTAAACCTCCATGG 59.816 60.000 4.97 4.97 42.93 3.66
580 616 0.466372 GCCCTCTAAACCTCCATGGC 60.466 60.000 6.96 0.00 40.22 4.40
581 617 0.183731 CCCTCTAAACCTCCATGGCC 59.816 60.000 6.96 0.00 40.22 5.36
582 618 0.183731 CCTCTAAACCTCCATGGCCC 59.816 60.000 6.96 0.00 40.22 5.80
583 619 0.918983 CTCTAAACCTCCATGGCCCA 59.081 55.000 6.96 0.00 40.22 5.36
584 620 1.284785 CTCTAAACCTCCATGGCCCAA 59.715 52.381 6.96 0.00 40.22 4.12
585 621 1.713647 TCTAAACCTCCATGGCCCAAA 59.286 47.619 6.96 0.00 40.22 3.28
586 622 2.102578 CTAAACCTCCATGGCCCAAAG 58.897 52.381 6.96 0.00 40.22 2.77
587 623 0.190815 AAACCTCCATGGCCCAAAGT 59.809 50.000 6.96 0.00 40.22 2.66
588 624 0.251787 AACCTCCATGGCCCAAAGTC 60.252 55.000 6.96 0.00 40.22 3.01
589 625 1.380380 CCTCCATGGCCCAAAGTCC 60.380 63.158 6.96 0.00 0.00 3.85
590 626 1.750399 CTCCATGGCCCAAAGTCCG 60.750 63.158 6.96 0.00 0.00 4.79
591 627 2.035626 CCATGGCCCAAAGTCCGT 59.964 61.111 0.00 0.00 0.00 4.69
592 628 2.046285 CCATGGCCCAAAGTCCGTC 61.046 63.158 0.00 0.00 0.00 4.79
593 629 2.046314 ATGGCCCAAAGTCCGTCG 60.046 61.111 0.00 0.00 0.00 5.12
594 630 3.622060 ATGGCCCAAAGTCCGTCGG 62.622 63.158 4.39 4.39 0.00 4.79
595 631 4.324991 GGCCCAAAGTCCGTCGGT 62.325 66.667 11.88 0.00 0.00 4.69
596 632 3.047877 GCCCAAAGTCCGTCGGTG 61.048 66.667 11.88 1.56 0.00 4.94
597 633 2.738480 CCCAAAGTCCGTCGGTGA 59.262 61.111 11.88 0.00 0.00 4.02
598 634 1.295423 CCCAAAGTCCGTCGGTGAT 59.705 57.895 11.88 0.00 0.00 3.06
599 635 1.019278 CCCAAAGTCCGTCGGTGATG 61.019 60.000 11.88 6.65 0.00 3.07
600 636 0.037697 CCAAAGTCCGTCGGTGATGA 60.038 55.000 11.88 0.00 0.00 2.92
601 637 1.350193 CAAAGTCCGTCGGTGATGAG 58.650 55.000 11.88 0.00 0.00 2.90
602 638 0.246635 AAAGTCCGTCGGTGATGAGG 59.753 55.000 11.88 0.00 0.00 3.86
603 639 0.611062 AAGTCCGTCGGTGATGAGGA 60.611 55.000 11.88 0.00 0.00 3.71
604 640 1.032657 AGTCCGTCGGTGATGAGGAG 61.033 60.000 11.88 0.00 0.00 3.69
605 641 1.753078 TCCGTCGGTGATGAGGAGG 60.753 63.158 11.88 0.00 0.00 4.30
606 642 1.753078 CCGTCGGTGATGAGGAGGA 60.753 63.158 2.08 0.00 0.00 3.71
607 643 1.433879 CGTCGGTGATGAGGAGGAC 59.566 63.158 0.00 0.00 0.00 3.85
608 644 1.817209 GTCGGTGATGAGGAGGACC 59.183 63.158 0.00 0.00 0.00 4.46
609 645 2.808315 CGGTGATGAGGAGGACCG 59.192 66.667 0.00 0.00 44.86 4.79
610 646 2.786495 CGGTGATGAGGAGGACCGG 61.786 68.421 0.00 0.00 46.13 5.28
611 647 1.686110 GGTGATGAGGAGGACCGGT 60.686 63.158 6.92 6.92 41.83 5.28
612 648 1.517832 GTGATGAGGAGGACCGGTG 59.482 63.158 14.63 0.00 41.83 4.94
613 649 1.685765 TGATGAGGAGGACCGGTGG 60.686 63.158 14.63 0.00 41.83 4.61
614 650 3.083997 ATGAGGAGGACCGGTGGC 61.084 66.667 14.63 0.00 41.83 5.01
615 651 3.625632 ATGAGGAGGACCGGTGGCT 62.626 63.158 14.63 0.00 41.83 4.75
616 652 3.775654 GAGGAGGACCGGTGGCTG 61.776 72.222 14.63 0.00 41.83 4.85
631 667 4.554363 CTGCGCCGACGGTAGGAG 62.554 72.222 16.73 16.06 40.57 3.69
634 670 3.584052 CGCCGACGGTAGGAGGAG 61.584 72.222 16.73 0.00 34.97 3.69
635 671 3.217743 GCCGACGGTAGGAGGAGG 61.218 72.222 16.73 0.00 0.00 4.30
636 672 2.593978 CCGACGGTAGGAGGAGGA 59.406 66.667 5.48 0.00 0.00 3.71
637 673 1.077212 CCGACGGTAGGAGGAGGAA 60.077 63.158 5.48 0.00 0.00 3.36
638 674 1.102222 CCGACGGTAGGAGGAGGAAG 61.102 65.000 5.48 0.00 0.00 3.46
639 675 1.726533 CGACGGTAGGAGGAGGAAGC 61.727 65.000 0.00 0.00 0.00 3.86
640 676 1.381463 ACGGTAGGAGGAGGAAGCC 60.381 63.158 0.00 0.00 0.00 4.35
641 677 1.381327 CGGTAGGAGGAGGAAGCCA 60.381 63.158 0.00 0.00 0.00 4.75
642 678 0.976073 CGGTAGGAGGAGGAAGCCAA 60.976 60.000 0.00 0.00 0.00 4.52
643 679 0.542333 GGTAGGAGGAGGAAGCCAAC 59.458 60.000 0.00 0.00 0.00 3.77
644 680 1.276622 GTAGGAGGAGGAAGCCAACA 58.723 55.000 0.00 0.00 0.00 3.33
645 681 1.628846 GTAGGAGGAGGAAGCCAACAA 59.371 52.381 0.00 0.00 0.00 2.83
646 682 0.695347 AGGAGGAGGAAGCCAACAAG 59.305 55.000 0.00 0.00 0.00 3.16
647 683 0.962855 GGAGGAGGAAGCCAACAAGC 60.963 60.000 0.00 0.00 0.00 4.01
649 685 1.279271 GAGGAGGAAGCCAACAAGCTA 59.721 52.381 0.00 0.00 44.11 3.32
650 686 1.705186 AGGAGGAAGCCAACAAGCTAA 59.295 47.619 0.00 0.00 44.11 3.09
651 687 2.108250 AGGAGGAAGCCAACAAGCTAAA 59.892 45.455 0.00 0.00 44.11 1.85
652 688 2.229062 GGAGGAAGCCAACAAGCTAAAC 59.771 50.000 0.00 0.00 44.11 2.01
653 689 2.229062 GAGGAAGCCAACAAGCTAAACC 59.771 50.000 0.00 0.00 44.11 3.27
654 690 2.158460 AGGAAGCCAACAAGCTAAACCT 60.158 45.455 0.00 0.00 44.11 3.50
655 691 2.229062 GGAAGCCAACAAGCTAAACCTC 59.771 50.000 0.00 0.00 44.11 3.85
656 692 2.656947 AGCCAACAAGCTAAACCTCA 57.343 45.000 0.00 0.00 42.70 3.86
657 693 2.944129 AGCCAACAAGCTAAACCTCAA 58.056 42.857 0.00 0.00 42.70 3.02
658 694 3.500343 AGCCAACAAGCTAAACCTCAAT 58.500 40.909 0.00 0.00 42.70 2.57
659 695 3.256631 AGCCAACAAGCTAAACCTCAATG 59.743 43.478 0.00 0.00 42.70 2.82
660 696 3.255642 GCCAACAAGCTAAACCTCAATGA 59.744 43.478 0.00 0.00 0.00 2.57
661 697 4.261994 GCCAACAAGCTAAACCTCAATGAA 60.262 41.667 0.00 0.00 0.00 2.57
662 698 5.222631 CCAACAAGCTAAACCTCAATGAAC 58.777 41.667 0.00 0.00 0.00 3.18
663 699 5.221224 CCAACAAGCTAAACCTCAATGAACA 60.221 40.000 0.00 0.00 0.00 3.18
664 700 6.449698 CAACAAGCTAAACCTCAATGAACAT 58.550 36.000 0.00 0.00 0.00 2.71
665 701 6.259550 ACAAGCTAAACCTCAATGAACATC 57.740 37.500 0.00 0.00 0.00 3.06
666 702 5.769662 ACAAGCTAAACCTCAATGAACATCA 59.230 36.000 0.00 0.00 0.00 3.07
667 703 6.435277 ACAAGCTAAACCTCAATGAACATCAT 59.565 34.615 0.00 0.00 39.09 2.45
668 704 7.611467 ACAAGCTAAACCTCAATGAACATCATA 59.389 33.333 0.00 0.00 35.76 2.15
669 705 8.627403 CAAGCTAAACCTCAATGAACATCATAT 58.373 33.333 0.00 0.00 35.76 1.78
670 706 8.757982 AGCTAAACCTCAATGAACATCATATT 57.242 30.769 0.00 0.00 35.76 1.28
671 707 9.851686 AGCTAAACCTCAATGAACATCATATTA 57.148 29.630 0.00 0.00 35.76 0.98
698 734 9.781633 AATCATTTGAAAGATGATTTTTGACCA 57.218 25.926 6.52 0.00 46.63 4.02
699 735 9.953565 ATCATTTGAAAGATGATTTTTGACCAT 57.046 25.926 0.00 0.00 40.40 3.55
700 736 9.426837 TCATTTGAAAGATGATTTTTGACCATC 57.573 29.630 0.00 0.00 37.53 3.51
701 737 8.662141 CATTTGAAAGATGATTTTTGACCATCC 58.338 33.333 0.00 0.00 37.88 3.51
702 738 6.914654 TGAAAGATGATTTTTGACCATCCA 57.085 33.333 0.00 0.00 37.88 3.41
703 739 7.300556 TGAAAGATGATTTTTGACCATCCAA 57.699 32.000 0.00 0.00 37.88 3.53
704 740 7.733969 TGAAAGATGATTTTTGACCATCCAAA 58.266 30.769 0.00 0.00 37.88 3.28
705 741 8.209584 TGAAAGATGATTTTTGACCATCCAAAA 58.790 29.630 0.00 0.00 42.30 2.44
735 771 2.559698 TTTTGCGAGAAGACCATCCA 57.440 45.000 0.00 0.00 0.00 3.41
736 772 2.559698 TTTGCGAGAAGACCATCCAA 57.440 45.000 0.00 0.00 0.00 3.53
737 773 2.559698 TTGCGAGAAGACCATCCAAA 57.440 45.000 0.00 0.00 0.00 3.28
738 774 2.559698 TGCGAGAAGACCATCCAAAA 57.440 45.000 0.00 0.00 0.00 2.44
739 775 2.857483 TGCGAGAAGACCATCCAAAAA 58.143 42.857 0.00 0.00 0.00 1.94
761 797 5.847670 AAAACTTGATGAACTACGAGAGC 57.152 39.130 0.00 0.00 0.00 4.09
762 798 4.792521 AACTTGATGAACTACGAGAGCT 57.207 40.909 0.00 0.00 0.00 4.09
763 799 5.899120 AACTTGATGAACTACGAGAGCTA 57.101 39.130 0.00 0.00 0.00 3.32
764 800 5.238006 ACTTGATGAACTACGAGAGCTAC 57.762 43.478 0.00 0.00 0.00 3.58
765 801 3.946308 TGATGAACTACGAGAGCTACG 57.054 47.619 10.54 10.54 0.00 3.51
766 802 3.268330 TGATGAACTACGAGAGCTACGT 58.732 45.455 19.33 19.33 45.75 3.57
767 803 3.688185 TGATGAACTACGAGAGCTACGTT 59.312 43.478 20.28 6.13 43.62 3.99
768 804 4.872124 TGATGAACTACGAGAGCTACGTTA 59.128 41.667 20.28 8.53 43.62 3.18
769 805 4.590400 TGAACTACGAGAGCTACGTTAC 57.410 45.455 20.28 11.57 43.62 2.50
770 806 3.372206 TGAACTACGAGAGCTACGTTACC 59.628 47.826 20.28 10.32 43.62 2.85
771 807 2.284190 ACTACGAGAGCTACGTTACCC 58.716 52.381 20.28 0.00 43.62 3.69
772 808 2.283298 CTACGAGAGCTACGTTACCCA 58.717 52.381 20.28 4.90 43.62 4.51
773 809 1.093159 ACGAGAGCTACGTTACCCAG 58.907 55.000 11.73 0.00 41.18 4.45
774 810 1.093159 CGAGAGCTACGTTACCCAGT 58.907 55.000 0.00 0.00 0.00 4.00
775 811 1.471684 CGAGAGCTACGTTACCCAGTT 59.528 52.381 0.00 0.00 0.00 3.16
776 812 2.094854 CGAGAGCTACGTTACCCAGTTT 60.095 50.000 0.00 0.00 0.00 2.66
777 813 3.613432 CGAGAGCTACGTTACCCAGTTTT 60.613 47.826 0.00 0.00 0.00 2.43
778 814 3.660865 AGAGCTACGTTACCCAGTTTTG 58.339 45.455 0.00 0.00 0.00 2.44
779 815 3.070590 AGAGCTACGTTACCCAGTTTTGT 59.929 43.478 0.00 0.00 0.00 2.83
780 816 3.396560 AGCTACGTTACCCAGTTTTGTC 58.603 45.455 0.00 0.00 0.00 3.18
781 817 3.070590 AGCTACGTTACCCAGTTTTGTCT 59.929 43.478 0.00 0.00 0.00 3.41
782 818 4.281688 AGCTACGTTACCCAGTTTTGTCTA 59.718 41.667 0.00 0.00 0.00 2.59
783 819 4.624452 GCTACGTTACCCAGTTTTGTCTAG 59.376 45.833 0.00 0.00 0.00 2.43
784 820 4.942761 ACGTTACCCAGTTTTGTCTAGA 57.057 40.909 0.00 0.00 0.00 2.43
785 821 5.280654 ACGTTACCCAGTTTTGTCTAGAA 57.719 39.130 0.00 0.00 0.00 2.10
786 822 5.673514 ACGTTACCCAGTTTTGTCTAGAAA 58.326 37.500 0.00 0.00 0.00 2.52
787 823 6.114767 ACGTTACCCAGTTTTGTCTAGAAAA 58.885 36.000 0.00 0.00 0.00 2.29
788 824 6.769341 ACGTTACCCAGTTTTGTCTAGAAAAT 59.231 34.615 0.00 0.00 0.00 1.82
789 825 7.075741 CGTTACCCAGTTTTGTCTAGAAAATG 58.924 38.462 0.00 0.00 33.32 2.32
790 826 7.255001 CGTTACCCAGTTTTGTCTAGAAAATGT 60.255 37.037 0.00 0.00 32.06 2.71
791 827 6.635030 ACCCAGTTTTGTCTAGAAAATGTC 57.365 37.500 0.00 0.00 32.06 3.06
792 828 6.365520 ACCCAGTTTTGTCTAGAAAATGTCT 58.634 36.000 0.00 0.00 40.71 3.41
793 829 6.263168 ACCCAGTTTTGTCTAGAAAATGTCTG 59.737 38.462 0.00 5.89 37.12 3.51
794 830 6.294176 CCCAGTTTTGTCTAGAAAATGTCTGG 60.294 42.308 21.79 21.79 37.12 3.86
795 831 6.486657 CCAGTTTTGTCTAGAAAATGTCTGGA 59.513 38.462 23.08 0.00 41.27 3.86
796 832 7.013274 CCAGTTTTGTCTAGAAAATGTCTGGAA 59.987 37.037 23.08 3.55 44.67 3.53
797 833 8.571336 CAGTTTTGTCTAGAAAATGTCTGGAAT 58.429 33.333 0.00 0.00 44.67 3.01
798 834 9.136323 AGTTTTGTCTAGAAAATGTCTGGAATT 57.864 29.630 0.00 0.00 44.67 2.17
805 841 9.113838 TCTAGAAAATGTCTGGAATTAATCTGC 57.886 33.333 0.00 0.00 40.63 4.26
806 842 7.951347 AGAAAATGTCTGGAATTAATCTGCT 57.049 32.000 0.00 0.00 34.29 4.24
807 843 7.994194 AGAAAATGTCTGGAATTAATCTGCTC 58.006 34.615 0.00 0.00 34.29 4.26
808 844 5.998454 AATGTCTGGAATTAATCTGCTCG 57.002 39.130 0.00 0.00 0.00 5.03
809 845 4.736126 TGTCTGGAATTAATCTGCTCGA 57.264 40.909 0.00 0.00 0.00 4.04
810 846 5.282055 TGTCTGGAATTAATCTGCTCGAT 57.718 39.130 0.00 0.00 0.00 3.59
811 847 5.674525 TGTCTGGAATTAATCTGCTCGATT 58.325 37.500 6.95 6.95 44.35 3.34
812 848 5.755375 TGTCTGGAATTAATCTGCTCGATTC 59.245 40.000 5.30 0.00 41.36 2.52
813 849 5.755375 GTCTGGAATTAATCTGCTCGATTCA 59.245 40.000 5.30 0.00 41.36 2.57
814 850 5.987953 TCTGGAATTAATCTGCTCGATTCAG 59.012 40.000 8.14 8.14 41.36 3.02
815 851 5.059161 TGGAATTAATCTGCTCGATTCAGG 58.941 41.667 12.92 0.00 41.36 3.86
816 852 5.163311 TGGAATTAATCTGCTCGATTCAGGA 60.163 40.000 12.92 3.44 41.36 3.86
817 853 5.760253 GGAATTAATCTGCTCGATTCAGGAA 59.240 40.000 12.92 7.27 41.36 3.36
818 854 6.293135 GGAATTAATCTGCTCGATTCAGGAAC 60.293 42.308 12.92 2.12 41.36 3.62
819 855 3.902881 AATCTGCTCGATTCAGGAACT 57.097 42.857 12.92 0.00 37.85 3.01
836 872 4.946157 AGGAACTGATTTCAGGTATGCTTG 59.054 41.667 11.99 0.00 45.35 4.01
851 887 1.016627 GCTTGCAATGCAGGATACGA 58.983 50.000 21.65 0.00 40.61 3.43
863 899 4.453136 TGCAGGATACGAAAAACAACTACC 59.547 41.667 0.00 0.00 46.39 3.18
903 939 2.154389 CAGGTGCACGTTACGTAACTTC 59.846 50.000 30.01 20.22 38.32 3.01
911 949 2.408865 CGTTACGTAACTTCGTTGTGGC 60.409 50.000 30.01 5.64 43.80 5.01
914 952 1.205820 GTAACTTCGTTGTGGCCGC 59.794 57.895 10.11 10.11 0.00 6.53
1026 1070 3.083997 GCGGTGGACCTGGAGGAT 61.084 66.667 0.00 0.00 38.94 3.24
1212 1256 0.252558 TCGTAAGCTCCCCCTTCCTT 60.253 55.000 0.00 0.00 37.18 3.36
1215 1259 1.489649 GTAAGCTCCCCCTTCCTTACC 59.510 57.143 0.00 0.00 35.69 2.85
1217 1261 1.618447 GCTCCCCCTTCCTTACCCA 60.618 63.158 0.00 0.00 0.00 4.51
1223 1267 1.345526 CCCCTTCCTTACCCATCCTCT 60.346 57.143 0.00 0.00 0.00 3.69
1268 1312 3.174799 GTGCTAACACAAAGCTTCTCG 57.825 47.619 0.00 0.00 46.61 4.04
1314 1358 4.035102 GGCTCCTGGGCCGACTTT 62.035 66.667 9.92 0.00 42.82 2.66
1317 1361 1.614241 GCTCCTGGGCCGACTTTCTA 61.614 60.000 0.00 0.00 0.00 2.10
1323 1367 3.325135 CCTGGGCCGACTTTCTAGATTAT 59.675 47.826 0.00 0.00 0.00 1.28
1426 1482 7.278424 CCACTTCAAATTCGCCAAATATTCATT 59.722 33.333 0.00 0.00 0.00 2.57
1562 1631 2.361119 CTCCATAGTGTTACTGGCGCTA 59.639 50.000 7.64 0.00 34.08 4.26
1574 1643 1.091197 TGGCGCTACGACGAGTGATA 61.091 55.000 7.64 0.00 37.93 2.15
1665 1751 4.753233 TGTTGTTGCTTGCTGTTTTGTAT 58.247 34.783 0.00 0.00 0.00 2.29
1683 1769 7.880160 TTTGTATGCTTAATTGCCTATCTGT 57.120 32.000 0.00 0.00 0.00 3.41
1790 1948 2.224843 ACAAATGTCACAGCTGATGGGA 60.225 45.455 23.35 9.31 39.74 4.37
1792 1950 2.885135 ATGTCACAGCTGATGGGAAA 57.115 45.000 23.35 7.70 44.99 3.13
1834 1999 5.074115 AGGTCATCTTATCTCCTAACTCCG 58.926 45.833 0.00 0.00 0.00 4.63
1838 2003 6.263617 GTCATCTTATCTCCTAACTCCGAACT 59.736 42.308 0.00 0.00 0.00 3.01
1971 2149 9.493206 GTTAAACTGTCGAATAGTTTTCAACAA 57.507 29.630 25.05 14.91 43.71 2.83
1973 2151 8.782533 AAACTGTCGAATAGTTTTCAACAATC 57.217 30.769 18.28 0.00 43.71 2.67
1974 2152 7.490962 ACTGTCGAATAGTTTTCAACAATCA 57.509 32.000 0.00 0.00 0.00 2.57
1975 2153 7.925993 ACTGTCGAATAGTTTTCAACAATCAA 58.074 30.769 0.00 0.00 0.00 2.57
1976 2154 7.855904 ACTGTCGAATAGTTTTCAACAATCAAC 59.144 33.333 0.00 0.00 0.00 3.18
1977 2155 7.698628 TGTCGAATAGTTTTCAACAATCAACA 58.301 30.769 0.00 0.00 0.00 3.33
2021 2199 6.039941 CCATTGTACAAGGTTTTGTTACTCCA 59.960 38.462 18.13 0.00 45.01 3.86
2022 2200 7.416890 CCATTGTACAAGGTTTTGTTACTCCAA 60.417 37.037 18.13 0.00 45.01 3.53
2023 2201 7.463961 TTGTACAAGGTTTTGTTACTCCAAA 57.536 32.000 3.59 0.00 45.01 3.28
2024 2202 7.090953 TGTACAAGGTTTTGTTACTCCAAAG 57.909 36.000 0.00 0.00 45.01 2.77
2025 2203 5.006153 ACAAGGTTTTGTTACTCCAAAGC 57.994 39.130 0.00 0.00 45.01 3.51
2026 2204 3.982576 AGGTTTTGTTACTCCAAAGCG 57.017 42.857 0.00 0.00 36.68 4.68
2027 2205 2.034179 AGGTTTTGTTACTCCAAAGCGC 59.966 45.455 0.00 0.00 36.68 5.92
2028 2206 2.034179 GGTTTTGTTACTCCAAAGCGCT 59.966 45.455 2.64 2.64 36.68 5.92
2029 2207 3.297472 GTTTTGTTACTCCAAAGCGCTC 58.703 45.455 12.06 0.00 35.85 5.03
2030 2208 1.519408 TTGTTACTCCAAAGCGCTCC 58.481 50.000 12.06 0.00 0.00 4.70
2057 2235 0.106521 ACCTGGCATGTTTTTGCACC 59.893 50.000 0.00 0.00 44.59 5.01
2082 2260 7.417612 CCTAAAACATTATCTGTGGGAATTCG 58.582 38.462 0.00 0.00 38.39 3.34
2160 2338 3.228188 AGCTCAAACATCCTGGTTTCA 57.772 42.857 0.00 0.00 38.86 2.69
2179 2357 3.546724 TCACGATTGACCCAGTTTTGAA 58.453 40.909 0.00 0.00 0.00 2.69
2180 2358 3.563808 TCACGATTGACCCAGTTTTGAAG 59.436 43.478 0.00 0.00 0.00 3.02
2181 2359 2.293399 ACGATTGACCCAGTTTTGAAGC 59.707 45.455 0.00 0.00 0.00 3.86
2182 2360 2.554032 CGATTGACCCAGTTTTGAAGCT 59.446 45.455 0.00 0.00 0.00 3.74
2184 2362 1.981256 TGACCCAGTTTTGAAGCTCC 58.019 50.000 0.00 0.00 0.00 4.70
2244 2424 4.453478 TGCATGTGATGTTTCTTCAGAGTC 59.547 41.667 0.00 0.00 0.00 3.36
2342 2522 6.610075 ATGTAAATTGCTGGGATGTTTCTT 57.390 33.333 0.00 0.00 0.00 2.52
2478 2658 0.390860 GTGTCTGCTGTGACTCTGGT 59.609 55.000 6.63 0.00 37.79 4.00
2485 2665 1.067915 GCTGTGACTCTGGTCTCTGAC 60.068 57.143 8.48 0.00 42.54 3.51
2705 2885 8.783093 CCTTGAAACACTACTTTGATGTGAATA 58.217 33.333 0.00 0.00 35.83 1.75
2722 2903 9.692749 GATGTGAATAGAGTTTAATACATCGGA 57.307 33.333 0.00 0.00 35.45 4.55
2894 3075 3.626930 ACAAAGAGTGGCTTGTGGTTAA 58.373 40.909 0.00 0.00 36.80 2.01
3056 3273 5.425217 TGAACATAGGTAGAGGATGCAAAGA 59.575 40.000 0.00 0.00 0.00 2.52
3088 3311 3.440872 GCTCCTCTGAAGACGTAGAGAAA 59.559 47.826 13.49 2.40 42.34 2.52
3089 3312 4.438200 GCTCCTCTGAAGACGTAGAGAAAG 60.438 50.000 13.49 11.11 42.34 2.62
3090 3313 4.907809 TCCTCTGAAGACGTAGAGAAAGA 58.092 43.478 13.49 1.59 42.34 2.52
3092 3315 5.181622 TCCTCTGAAGACGTAGAGAAAGAAC 59.818 44.000 13.49 0.00 42.34 3.01
3104 3327 4.273318 AGAGAAAGAACCCCATGTATTGC 58.727 43.478 0.00 0.00 0.00 3.56
3107 3330 2.799126 AGAACCCCATGTATTGCGAA 57.201 45.000 0.00 0.00 0.00 4.70
3108 3331 3.080300 AGAACCCCATGTATTGCGAAA 57.920 42.857 0.00 0.00 0.00 3.46
3176 3407 3.763097 TTATTTCAGTCATGGCTTGCG 57.237 42.857 0.00 0.00 0.00 4.85
3204 3435 1.981533 GCTCTTGTTTTTCTGCATCGC 59.018 47.619 0.00 0.00 0.00 4.58
3206 3437 3.231965 CTCTTGTTTTTCTGCATCGCTG 58.768 45.455 0.00 0.00 0.00 5.18
3211 3442 3.812609 TGTTTTTCTGCATCGCTGAGTTA 59.187 39.130 0.00 0.00 37.75 2.24
3274 3505 6.218746 AGTTGTGAAAGAGGAATGATTTTGC 58.781 36.000 0.00 0.00 0.00 3.68
3294 3525 2.734670 CGCATCAATTTCGATTGGCAT 58.265 42.857 0.00 0.00 32.65 4.40
3315 3604 1.401539 GGCCTTCTGAATTTGTGTCGC 60.402 52.381 0.00 0.00 0.00 5.19
3321 3610 4.891627 TCTGAATTTGTGTCGCTTTCAA 57.108 36.364 0.00 0.00 0.00 2.69
3355 3644 7.210873 ACAAGAGTCGAGTAAGAGAACAAATT 58.789 34.615 0.00 0.00 0.00 1.82
3373 3662 9.599322 GAACAAATTATATTATCAGGTTGCTCG 57.401 33.333 0.00 0.00 0.00 5.03
3382 3671 3.896648 TCAGGTTGCTCGAAATGAAAC 57.103 42.857 0.00 0.00 0.00 2.78
3388 3678 3.896648 TGCTCGAAATGAAACCACTTC 57.103 42.857 0.00 0.00 34.31 3.01
3418 3708 5.437191 AATTCGACTACCAGAAAGGGAAT 57.563 39.130 0.00 0.00 43.89 3.01
3428 3718 8.612145 ACTACCAGAAAGGGAATTATGTTAACT 58.388 33.333 7.22 0.00 43.89 2.24
3452 3742 1.374758 CAGTGAGCTCCCGAACACC 60.375 63.158 12.15 0.00 34.33 4.16
3471 3763 1.270550 CCGCCATTTCAGAAGCAACTT 59.729 47.619 0.00 0.00 0.00 2.66
3472 3764 2.322161 CGCCATTTCAGAAGCAACTTG 58.678 47.619 0.00 0.00 0.00 3.16
3473 3765 2.064014 GCCATTTCAGAAGCAACTTGC 58.936 47.619 5.55 5.55 45.46 4.01
3474 3766 2.680577 CCATTTCAGAAGCAACTTGCC 58.319 47.619 10.25 0.00 46.52 4.52
3475 3767 2.036217 CCATTTCAGAAGCAACTTGCCA 59.964 45.455 10.25 0.00 46.52 4.92
3476 3768 3.306502 CCATTTCAGAAGCAACTTGCCAT 60.307 43.478 10.25 0.00 46.52 4.40
3477 3769 4.082081 CCATTTCAGAAGCAACTTGCCATA 60.082 41.667 10.25 0.00 46.52 2.74
3478 3770 5.472148 CATTTCAGAAGCAACTTGCCATAA 58.528 37.500 10.25 0.00 46.52 1.90
3544 3849 1.739562 GCACCTCGTCTGCAGGAAG 60.740 63.158 15.13 8.77 34.75 3.46
3572 3877 2.372172 TCTCAGGAAACAAGGGAGGAAC 59.628 50.000 0.00 0.00 0.00 3.62
3580 3885 1.841556 AAGGGAGGAACAGCGACCA 60.842 57.895 0.00 0.00 0.00 4.02
3581 3886 1.415672 AAGGGAGGAACAGCGACCAA 61.416 55.000 0.00 0.00 0.00 3.67
3625 3937 2.750807 GCCCATGTCAAGCTCACCATAT 60.751 50.000 0.00 0.00 0.00 1.78
3637 3949 1.133294 TCACCATATCTCCTACCGGCA 60.133 52.381 0.00 0.00 0.00 5.69
3659 3971 0.951040 CTCAGGCGTCAAGAACACCC 60.951 60.000 0.00 0.00 29.63 4.61
3730 4042 0.110644 GCTGCTCGGAACTTTCAACG 60.111 55.000 0.00 0.00 0.00 4.10
3737 4049 3.008330 TCGGAACTTTCAACGGAAACAA 58.992 40.909 0.00 0.00 38.07 2.83
3755 4067 2.049156 CACGGCGTGAGAGCTTGA 60.049 61.111 34.85 0.00 35.23 3.02
3809 4121 2.187685 CCATGCTGGCGCTGTAGA 59.812 61.111 7.64 0.00 36.97 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.741647 TGAAAGTTTTGTTGCAAAAATTCTTTT 57.258 22.222 21.97 13.42 35.02 2.27
23 24 9.741647 TTGAAAGTTTTGTTGCAAAAATTCTTT 57.258 22.222 21.57 21.57 32.02 2.52
24 25 9.741647 TTTGAAAGTTTTGTTGCAAAAATTCTT 57.258 22.222 16.56 8.07 32.02 2.52
25 26 9.911138 ATTTGAAAGTTTTGTTGCAAAAATTCT 57.089 22.222 16.56 2.21 32.02 2.40
28 29 9.688592 TGAATTTGAAAGTTTTGTTGCAAAAAT 57.311 22.222 2.11 5.23 32.02 1.82
29 30 9.688592 ATGAATTTGAAAGTTTTGTTGCAAAAA 57.311 22.222 0.00 0.00 0.00 1.94
30 31 9.688592 AATGAATTTGAAAGTTTTGTTGCAAAA 57.311 22.222 0.00 0.00 0.00 2.44
31 32 9.339492 GAATGAATTTGAAAGTTTTGTTGCAAA 57.661 25.926 0.00 0.00 0.00 3.68
32 33 8.728833 AGAATGAATTTGAAAGTTTTGTTGCAA 58.271 25.926 0.00 0.00 0.00 4.08
33 34 8.266392 AGAATGAATTTGAAAGTTTTGTTGCA 57.734 26.923 0.00 0.00 0.00 4.08
57 61 7.414540 GGTCTTCTTTGTACTGCCATGATTAAG 60.415 40.741 0.00 0.00 0.00 1.85
59 63 5.880332 GGTCTTCTTTGTACTGCCATGATTA 59.120 40.000 0.00 0.00 0.00 1.75
105 113 1.033574 CTAGGTGATCCACGGACCTC 58.966 60.000 5.01 0.00 40.67 3.85
117 125 1.736126 CTTGTAGTCGTCGCTAGGTGA 59.264 52.381 0.00 0.00 0.00 4.02
143 151 1.400371 CGACAGGTCTTCGACTCACTG 60.400 57.143 5.19 5.19 38.85 3.66
156 164 1.374252 GGCAATGACGACGACAGGT 60.374 57.895 0.00 0.00 0.00 4.00
224 236 1.496060 TGGGGTCTTAGCATGACGAT 58.504 50.000 0.00 0.00 35.45 3.73
245 258 2.016318 CTGCTCTTGTGTGTTGTTCCA 58.984 47.619 0.00 0.00 0.00 3.53
249 262 2.213499 GCTACTGCTCTTGTGTGTTGT 58.787 47.619 0.00 0.00 36.03 3.32
258 271 0.176680 CGGTGATGGCTACTGCTCTT 59.823 55.000 0.00 0.00 39.59 2.85
268 281 2.359900 ACTTTCTTCATCGGTGATGGC 58.640 47.619 11.29 0.00 40.15 4.40
296 309 6.325919 GTGTTTACACATTTGATCCTTCCA 57.674 37.500 8.09 0.00 45.75 3.53
330 343 2.777692 TGGTGGATCTATTTGGACCTCC 59.222 50.000 0.00 0.00 35.60 4.30
331 344 4.503714 TTGGTGGATCTATTTGGACCTC 57.496 45.455 0.00 0.00 0.00 3.85
334 368 4.640647 GGTCTTTGGTGGATCTATTTGGAC 59.359 45.833 0.00 0.00 0.00 4.02
487 523 2.675844 CGTCTTGGTTGAAGTTGTGTGA 59.324 45.455 0.00 0.00 32.90 3.58
494 530 4.451900 AGTTTCATCGTCTTGGTTGAAGT 58.548 39.130 0.00 0.00 32.90 3.01
495 531 6.018262 TGTTAGTTTCATCGTCTTGGTTGAAG 60.018 38.462 0.00 0.00 30.45 3.02
496 532 5.818336 TGTTAGTTTCATCGTCTTGGTTGAA 59.182 36.000 0.00 0.00 0.00 2.69
497 533 5.361427 TGTTAGTTTCATCGTCTTGGTTGA 58.639 37.500 0.00 0.00 0.00 3.18
498 534 5.666969 TGTTAGTTTCATCGTCTTGGTTG 57.333 39.130 0.00 0.00 0.00 3.77
499 535 6.053005 TCTTGTTAGTTTCATCGTCTTGGTT 58.947 36.000 0.00 0.00 0.00 3.67
500 536 5.607477 TCTTGTTAGTTTCATCGTCTTGGT 58.393 37.500 0.00 0.00 0.00 3.67
501 537 6.363473 GTTCTTGTTAGTTTCATCGTCTTGG 58.637 40.000 0.00 0.00 0.00 3.61
502 538 6.065153 CGTTCTTGTTAGTTTCATCGTCTTG 58.935 40.000 0.00 0.00 0.00 3.02
503 539 5.981315 TCGTTCTTGTTAGTTTCATCGTCTT 59.019 36.000 0.00 0.00 0.00 3.01
504 540 5.526115 TCGTTCTTGTTAGTTTCATCGTCT 58.474 37.500 0.00 0.00 0.00 4.18
505 541 5.628193 TCTCGTTCTTGTTAGTTTCATCGTC 59.372 40.000 0.00 0.00 0.00 4.20
506 542 5.526115 TCTCGTTCTTGTTAGTTTCATCGT 58.474 37.500 0.00 0.00 0.00 3.73
507 543 6.289901 GTTCTCGTTCTTGTTAGTTTCATCG 58.710 40.000 0.00 0.00 0.00 3.84
508 544 6.289901 CGTTCTCGTTCTTGTTAGTTTCATC 58.710 40.000 0.00 0.00 0.00 2.92
509 545 5.333111 GCGTTCTCGTTCTTGTTAGTTTCAT 60.333 40.000 0.00 0.00 39.49 2.57
510 546 4.026310 GCGTTCTCGTTCTTGTTAGTTTCA 60.026 41.667 0.00 0.00 39.49 2.69
511 547 4.443586 GCGTTCTCGTTCTTGTTAGTTTC 58.556 43.478 0.00 0.00 39.49 2.78
512 548 3.060740 CGCGTTCTCGTTCTTGTTAGTTT 60.061 43.478 0.00 0.00 39.49 2.66
513 549 2.470257 CGCGTTCTCGTTCTTGTTAGTT 59.530 45.455 0.00 0.00 39.49 2.24
514 550 2.049228 CGCGTTCTCGTTCTTGTTAGT 58.951 47.619 0.00 0.00 39.49 2.24
515 551 1.385743 CCGCGTTCTCGTTCTTGTTAG 59.614 52.381 4.92 0.00 39.49 2.34
516 552 1.269206 ACCGCGTTCTCGTTCTTGTTA 60.269 47.619 4.92 0.00 39.49 2.41
517 553 0.529119 ACCGCGTTCTCGTTCTTGTT 60.529 50.000 4.92 0.00 39.49 2.83
518 554 0.938168 GACCGCGTTCTCGTTCTTGT 60.938 55.000 4.92 0.00 39.49 3.16
519 555 0.663568 AGACCGCGTTCTCGTTCTTG 60.664 55.000 0.00 0.00 39.49 3.02
520 556 0.386985 GAGACCGCGTTCTCGTTCTT 60.387 55.000 18.14 0.00 39.49 2.52
521 557 1.209640 GAGACCGCGTTCTCGTTCT 59.790 57.895 18.14 0.98 39.49 3.01
522 558 0.793853 GAGAGACCGCGTTCTCGTTC 60.794 60.000 25.18 15.94 45.87 3.95
523 559 1.209640 GAGAGACCGCGTTCTCGTT 59.790 57.895 25.18 11.31 45.87 3.85
524 560 2.688794 GGAGAGACCGCGTTCTCGT 61.689 63.158 25.18 15.07 45.87 4.18
525 561 2.100603 GGAGAGACCGCGTTCTCG 59.899 66.667 25.18 2.72 45.87 4.04
526 562 2.341101 TGGGAGAGACCGCGTTCTC 61.341 63.158 24.40 24.40 42.22 2.87
527 563 2.282958 TGGGAGAGACCGCGTTCT 60.283 61.111 5.62 5.62 40.11 3.01
528 564 2.126031 GTGGGAGAGACCGCGTTC 60.126 66.667 4.92 0.00 40.11 3.95
529 565 3.692406 GGTGGGAGAGACCGCGTT 61.692 66.667 4.92 0.00 41.95 4.84
534 570 3.391382 CCACCGGTGGGAGAGACC 61.391 72.222 41.16 0.00 46.81 3.85
555 591 1.687297 GAGGTTTAGAGGGCCTCGGG 61.687 65.000 27.11 0.00 39.29 5.14
556 592 1.823976 GAGGTTTAGAGGGCCTCGG 59.176 63.158 27.11 0.00 39.29 4.63
558 594 1.141858 CATGGAGGTTTAGAGGGCCTC 59.858 57.143 26.42 26.42 45.92 4.70
559 595 1.216990 CATGGAGGTTTAGAGGGCCT 58.783 55.000 5.25 5.25 34.93 5.19
560 596 0.183731 CCATGGAGGTTTAGAGGGCC 59.816 60.000 5.56 0.00 0.00 5.80
561 597 0.466372 GCCATGGAGGTTTAGAGGGC 60.466 60.000 18.40 0.00 40.61 5.19
562 598 0.183731 GGCCATGGAGGTTTAGAGGG 59.816 60.000 18.40 0.00 40.61 4.30
563 599 0.183731 GGGCCATGGAGGTTTAGAGG 59.816 60.000 18.40 0.00 40.61 3.69
564 600 0.918983 TGGGCCATGGAGGTTTAGAG 59.081 55.000 18.40 0.00 40.61 2.43
565 601 1.377690 TTGGGCCATGGAGGTTTAGA 58.622 50.000 18.40 0.00 40.61 2.10
566 602 2.102578 CTTTGGGCCATGGAGGTTTAG 58.897 52.381 18.40 0.67 40.61 1.85
567 603 1.431243 ACTTTGGGCCATGGAGGTTTA 59.569 47.619 18.40 0.00 40.61 2.01
568 604 0.190815 ACTTTGGGCCATGGAGGTTT 59.809 50.000 18.40 0.00 40.61 3.27
569 605 0.251787 GACTTTGGGCCATGGAGGTT 60.252 55.000 18.40 0.00 40.61 3.50
570 606 1.384191 GACTTTGGGCCATGGAGGT 59.616 57.895 18.40 0.00 40.61 3.85
571 607 1.380380 GGACTTTGGGCCATGGAGG 60.380 63.158 18.40 0.00 41.84 4.30
572 608 1.750399 CGGACTTTGGGCCATGGAG 60.750 63.158 18.40 8.84 0.00 3.86
573 609 2.354729 CGGACTTTGGGCCATGGA 59.645 61.111 18.40 0.00 0.00 3.41
574 610 2.035626 ACGGACTTTGGGCCATGG 59.964 61.111 7.26 7.63 0.00 3.66
575 611 2.398554 CGACGGACTTTGGGCCATG 61.399 63.158 7.26 6.25 0.00 3.66
576 612 2.046314 CGACGGACTTTGGGCCAT 60.046 61.111 7.26 0.00 0.00 4.40
577 613 4.323477 CCGACGGACTTTGGGCCA 62.323 66.667 8.64 0.00 0.00 5.36
578 614 4.324991 ACCGACGGACTTTGGGCC 62.325 66.667 23.38 0.00 0.00 5.80
579 615 2.798148 ATCACCGACGGACTTTGGGC 62.798 60.000 23.38 0.00 0.00 5.36
580 616 1.019278 CATCACCGACGGACTTTGGG 61.019 60.000 23.38 0.87 0.00 4.12
581 617 0.037697 TCATCACCGACGGACTTTGG 60.038 55.000 23.38 4.83 0.00 3.28
582 618 1.350193 CTCATCACCGACGGACTTTG 58.650 55.000 23.38 8.53 0.00 2.77
583 619 0.246635 CCTCATCACCGACGGACTTT 59.753 55.000 23.38 0.00 0.00 2.66
584 620 0.611062 TCCTCATCACCGACGGACTT 60.611 55.000 23.38 0.66 0.00 3.01
585 621 1.001269 TCCTCATCACCGACGGACT 60.001 57.895 23.38 0.86 0.00 3.85
586 622 1.433879 CTCCTCATCACCGACGGAC 59.566 63.158 23.38 0.00 0.00 4.79
587 623 1.753078 CCTCCTCATCACCGACGGA 60.753 63.158 23.38 0.00 0.00 4.69
588 624 1.753078 TCCTCCTCATCACCGACGG 60.753 63.158 13.61 13.61 0.00 4.79
589 625 1.433879 GTCCTCCTCATCACCGACG 59.566 63.158 0.00 0.00 0.00 5.12
590 626 1.817209 GGTCCTCCTCATCACCGAC 59.183 63.158 0.00 0.00 0.00 4.79
591 627 4.356979 GGTCCTCCTCATCACCGA 57.643 61.111 0.00 0.00 0.00 4.69
592 628 2.808315 CGGTCCTCCTCATCACCG 59.192 66.667 0.00 0.00 45.38 4.94
593 629 1.686110 ACCGGTCCTCCTCATCACC 60.686 63.158 0.00 0.00 0.00 4.02
594 630 1.517832 CACCGGTCCTCCTCATCAC 59.482 63.158 2.59 0.00 0.00 3.06
595 631 1.685765 CCACCGGTCCTCCTCATCA 60.686 63.158 2.59 0.00 0.00 3.07
596 632 3.095347 GCCACCGGTCCTCCTCATC 62.095 68.421 2.59 0.00 0.00 2.92
597 633 3.083997 GCCACCGGTCCTCCTCAT 61.084 66.667 2.59 0.00 0.00 2.90
598 634 4.316823 AGCCACCGGTCCTCCTCA 62.317 66.667 2.59 0.00 0.00 3.86
599 635 3.775654 CAGCCACCGGTCCTCCTC 61.776 72.222 2.59 0.00 0.00 3.71
614 650 4.554363 CTCCTACCGTCGGCGCAG 62.554 72.222 12.28 5.07 36.67 5.18
617 653 3.584052 CTCCTCCTACCGTCGGCG 61.584 72.222 12.28 0.29 37.95 6.46
618 654 3.217743 CCTCCTCCTACCGTCGGC 61.218 72.222 12.28 0.00 0.00 5.54
619 655 1.077212 TTCCTCCTCCTACCGTCGG 60.077 63.158 10.48 10.48 0.00 4.79
620 656 1.726533 GCTTCCTCCTCCTACCGTCG 61.727 65.000 0.00 0.00 0.00 5.12
621 657 1.393487 GGCTTCCTCCTCCTACCGTC 61.393 65.000 0.00 0.00 0.00 4.79
622 658 1.381463 GGCTTCCTCCTCCTACCGT 60.381 63.158 0.00 0.00 0.00 4.83
623 659 0.976073 TTGGCTTCCTCCTCCTACCG 60.976 60.000 0.00 0.00 0.00 4.02
624 660 0.542333 GTTGGCTTCCTCCTCCTACC 59.458 60.000 0.00 0.00 0.00 3.18
625 661 1.276622 TGTTGGCTTCCTCCTCCTAC 58.723 55.000 0.00 0.00 0.00 3.18
626 662 1.909302 CTTGTTGGCTTCCTCCTCCTA 59.091 52.381 0.00 0.00 0.00 2.94
627 663 0.695347 CTTGTTGGCTTCCTCCTCCT 59.305 55.000 0.00 0.00 0.00 3.69
628 664 0.962855 GCTTGTTGGCTTCCTCCTCC 60.963 60.000 0.00 0.00 0.00 4.30
629 665 0.037447 AGCTTGTTGGCTTCCTCCTC 59.963 55.000 0.00 0.00 39.86 3.71
630 666 1.362224 TAGCTTGTTGGCTTCCTCCT 58.638 50.000 0.00 0.00 42.97 3.69
631 667 2.200373 TTAGCTTGTTGGCTTCCTCC 57.800 50.000 0.00 0.00 42.97 4.30
632 668 2.229062 GGTTTAGCTTGTTGGCTTCCTC 59.771 50.000 0.00 0.00 42.97 3.71
633 669 2.158460 AGGTTTAGCTTGTTGGCTTCCT 60.158 45.455 0.00 0.00 42.97 3.36
634 670 2.229062 GAGGTTTAGCTTGTTGGCTTCC 59.771 50.000 0.00 0.00 42.97 3.46
635 671 2.884639 TGAGGTTTAGCTTGTTGGCTTC 59.115 45.455 0.00 0.00 42.97 3.86
636 672 2.944129 TGAGGTTTAGCTTGTTGGCTT 58.056 42.857 0.00 0.00 42.97 4.35
637 673 2.656947 TGAGGTTTAGCTTGTTGGCT 57.343 45.000 0.00 0.00 45.29 4.75
638 674 3.255642 TCATTGAGGTTTAGCTTGTTGGC 59.744 43.478 0.00 0.00 0.00 4.52
639 675 5.221224 TGTTCATTGAGGTTTAGCTTGTTGG 60.221 40.000 0.00 0.00 0.00 3.77
640 676 5.830912 TGTTCATTGAGGTTTAGCTTGTTG 58.169 37.500 0.00 0.00 0.00 3.33
641 677 6.265196 TGATGTTCATTGAGGTTTAGCTTGTT 59.735 34.615 0.00 0.00 0.00 2.83
642 678 5.769662 TGATGTTCATTGAGGTTTAGCTTGT 59.230 36.000 0.00 0.00 0.00 3.16
643 679 6.258230 TGATGTTCATTGAGGTTTAGCTTG 57.742 37.500 0.00 0.00 0.00 4.01
644 680 8.757982 ATATGATGTTCATTGAGGTTTAGCTT 57.242 30.769 0.00 0.00 38.26 3.74
645 681 8.757982 AATATGATGTTCATTGAGGTTTAGCT 57.242 30.769 0.00 0.00 38.26 3.32
673 709 9.953565 ATGGTCAAAAATCATCTTTCAAATGAT 57.046 25.926 0.00 0.00 43.90 2.45
674 710 9.426837 GATGGTCAAAAATCATCTTTCAAATGA 57.573 29.630 0.00 0.00 37.53 2.57
675 711 8.662141 GGATGGTCAAAAATCATCTTTCAAATG 58.338 33.333 0.00 0.00 37.85 2.32
676 712 8.377034 TGGATGGTCAAAAATCATCTTTCAAAT 58.623 29.630 0.00 0.00 37.85 2.32
677 713 7.733969 TGGATGGTCAAAAATCATCTTTCAAA 58.266 30.769 0.00 0.00 37.85 2.69
678 714 7.300556 TGGATGGTCAAAAATCATCTTTCAA 57.699 32.000 0.00 0.00 37.85 2.69
679 715 6.914654 TGGATGGTCAAAAATCATCTTTCA 57.085 33.333 0.00 0.00 37.85 2.69
680 716 8.606040 TTTTGGATGGTCAAAAATCATCTTTC 57.394 30.769 0.00 0.00 41.76 2.62
681 717 8.977267 TTTTTGGATGGTCAAAAATCATCTTT 57.023 26.923 10.29 0.00 45.75 2.52
715 751 2.857483 TGGATGGTCTTCTCGCAAAAA 58.143 42.857 0.00 0.00 0.00 1.94
716 752 2.559698 TGGATGGTCTTCTCGCAAAA 57.440 45.000 0.00 0.00 0.00 2.44
717 753 2.559698 TTGGATGGTCTTCTCGCAAA 57.440 45.000 0.00 0.00 0.00 3.68
718 754 2.559698 TTTGGATGGTCTTCTCGCAA 57.440 45.000 0.00 0.00 0.00 4.85
719 755 2.559698 TTTTGGATGGTCTTCTCGCA 57.440 45.000 0.00 0.00 0.00 5.10
738 774 5.992217 AGCTCTCGTAGTTCATCAAGTTTTT 59.008 36.000 0.00 0.00 0.00 1.94
739 775 5.542779 AGCTCTCGTAGTTCATCAAGTTTT 58.457 37.500 0.00 0.00 0.00 2.43
740 776 5.140747 AGCTCTCGTAGTTCATCAAGTTT 57.859 39.130 0.00 0.00 0.00 2.66
741 777 4.792521 AGCTCTCGTAGTTCATCAAGTT 57.207 40.909 0.00 0.00 0.00 2.66
742 778 4.201832 CGTAGCTCTCGTAGTTCATCAAGT 60.202 45.833 0.00 0.00 0.00 3.16
743 779 4.201832 ACGTAGCTCTCGTAGTTCATCAAG 60.202 45.833 13.79 0.00 39.78 3.02
744 780 3.688185 ACGTAGCTCTCGTAGTTCATCAA 59.312 43.478 13.79 0.00 39.78 2.57
745 781 3.268330 ACGTAGCTCTCGTAGTTCATCA 58.732 45.455 13.79 0.00 39.78 3.07
746 782 3.948196 ACGTAGCTCTCGTAGTTCATC 57.052 47.619 13.79 0.00 39.78 2.92
747 783 4.034975 GGTAACGTAGCTCTCGTAGTTCAT 59.965 45.833 15.32 3.99 40.69 2.57
748 784 3.372206 GGTAACGTAGCTCTCGTAGTTCA 59.628 47.826 15.32 0.05 40.69 3.18
749 785 3.242576 GGGTAACGTAGCTCTCGTAGTTC 60.243 52.174 15.32 7.46 40.69 3.01
750 786 2.680339 GGGTAACGTAGCTCTCGTAGTT 59.320 50.000 15.32 5.18 40.69 2.24
751 787 2.284190 GGGTAACGTAGCTCTCGTAGT 58.716 52.381 15.32 5.77 40.69 2.73
752 788 2.283298 TGGGTAACGTAGCTCTCGTAG 58.717 52.381 15.32 0.00 40.69 3.51
753 789 2.283298 CTGGGTAACGTAGCTCTCGTA 58.717 52.381 15.32 1.67 40.69 3.43
754 790 1.093159 CTGGGTAACGTAGCTCTCGT 58.907 55.000 10.39 10.39 43.45 4.18
755 791 1.093159 ACTGGGTAACGTAGCTCTCG 58.907 55.000 9.21 9.21 37.60 4.04
756 792 3.589495 AAACTGGGTAACGTAGCTCTC 57.411 47.619 0.00 0.00 37.60 3.20
757 793 3.070590 ACAAAACTGGGTAACGTAGCTCT 59.929 43.478 0.00 0.00 37.60 4.09
758 794 3.396560 ACAAAACTGGGTAACGTAGCTC 58.603 45.455 0.00 0.00 37.60 4.09
759 795 3.070590 AGACAAAACTGGGTAACGTAGCT 59.929 43.478 0.00 0.00 37.60 3.32
760 796 3.396560 AGACAAAACTGGGTAACGTAGC 58.603 45.455 0.00 0.00 37.60 3.58
761 797 6.017400 TCTAGACAAAACTGGGTAACGTAG 57.983 41.667 0.00 0.00 37.60 3.51
762 798 6.403866 TTCTAGACAAAACTGGGTAACGTA 57.596 37.500 0.00 0.00 37.60 3.57
763 799 4.942761 TCTAGACAAAACTGGGTAACGT 57.057 40.909 0.00 0.00 37.60 3.99
764 800 6.607735 TTTTCTAGACAAAACTGGGTAACG 57.392 37.500 0.00 0.00 37.60 3.18
765 801 7.937649 ACATTTTCTAGACAAAACTGGGTAAC 58.062 34.615 0.00 0.00 0.00 2.50
766 802 7.996644 AGACATTTTCTAGACAAAACTGGGTAA 59.003 33.333 0.00 0.00 30.17 2.85
767 803 7.444183 CAGACATTTTCTAGACAAAACTGGGTA 59.556 37.037 0.00 0.00 31.12 3.69
768 804 6.263168 CAGACATTTTCTAGACAAAACTGGGT 59.737 38.462 0.00 0.00 31.12 4.51
769 805 6.294176 CCAGACATTTTCTAGACAAAACTGGG 60.294 42.308 21.37 9.32 33.83 4.45
770 806 6.486657 TCCAGACATTTTCTAGACAAAACTGG 59.513 38.462 22.23 22.23 36.03 4.00
771 807 7.496529 TCCAGACATTTTCTAGACAAAACTG 57.503 36.000 0.00 4.37 31.12 3.16
772 808 8.697507 ATTCCAGACATTTTCTAGACAAAACT 57.302 30.769 0.00 0.00 31.12 2.66
779 815 9.113838 GCAGATTAATTCCAGACATTTTCTAGA 57.886 33.333 0.00 0.00 31.12 2.43
780 816 9.118300 AGCAGATTAATTCCAGACATTTTCTAG 57.882 33.333 0.00 0.00 31.12 2.43
781 817 9.113838 GAGCAGATTAATTCCAGACATTTTCTA 57.886 33.333 0.00 0.00 31.12 2.10
782 818 7.201679 CGAGCAGATTAATTCCAGACATTTTCT 60.202 37.037 0.00 0.00 33.33 2.52
783 819 6.909357 CGAGCAGATTAATTCCAGACATTTTC 59.091 38.462 0.00 0.00 0.00 2.29
784 820 6.599244 TCGAGCAGATTAATTCCAGACATTTT 59.401 34.615 0.00 0.00 0.00 1.82
785 821 6.115446 TCGAGCAGATTAATTCCAGACATTT 58.885 36.000 0.00 0.00 0.00 2.32
786 822 5.674525 TCGAGCAGATTAATTCCAGACATT 58.325 37.500 0.00 0.00 0.00 2.71
787 823 5.282055 TCGAGCAGATTAATTCCAGACAT 57.718 39.130 0.00 0.00 0.00 3.06
788 824 4.736126 TCGAGCAGATTAATTCCAGACA 57.264 40.909 0.00 0.00 0.00 3.41
800 836 2.762887 TCAGTTCCTGAATCGAGCAGAT 59.237 45.455 16.99 0.00 37.57 2.90
801 837 2.171003 TCAGTTCCTGAATCGAGCAGA 58.829 47.619 16.99 3.76 37.57 4.26
802 838 2.662006 TCAGTTCCTGAATCGAGCAG 57.338 50.000 10.28 10.28 37.57 4.24
803 839 3.616956 AATCAGTTCCTGAATCGAGCA 57.383 42.857 0.00 0.00 44.04 4.26
804 840 3.935203 TGAAATCAGTTCCTGAATCGAGC 59.065 43.478 0.00 0.00 44.04 5.03
805 841 4.569966 CCTGAAATCAGTTCCTGAATCGAG 59.430 45.833 9.43 2.22 44.04 4.04
806 842 4.020218 ACCTGAAATCAGTTCCTGAATCGA 60.020 41.667 9.43 0.00 44.04 3.59
807 843 4.256920 ACCTGAAATCAGTTCCTGAATCG 58.743 43.478 9.43 0.00 44.04 3.34
808 844 6.238593 GCATACCTGAAATCAGTTCCTGAATC 60.239 42.308 9.43 1.56 44.04 2.52
809 845 5.591877 GCATACCTGAAATCAGTTCCTGAAT 59.408 40.000 9.43 0.00 44.04 2.57
810 846 4.943705 GCATACCTGAAATCAGTTCCTGAA 59.056 41.667 9.43 0.00 44.04 3.02
811 847 4.225942 AGCATACCTGAAATCAGTTCCTGA 59.774 41.667 9.43 0.00 44.99 3.86
812 848 4.521146 AGCATACCTGAAATCAGTTCCTG 58.479 43.478 9.43 3.30 42.27 3.86
813 849 4.851639 AGCATACCTGAAATCAGTTCCT 57.148 40.909 9.43 0.00 42.27 3.36
814 850 4.439289 GCAAGCATACCTGAAATCAGTTCC 60.439 45.833 9.43 0.00 42.27 3.62
815 851 4.156556 TGCAAGCATACCTGAAATCAGTTC 59.843 41.667 9.43 0.00 42.27 3.01
816 852 4.081406 TGCAAGCATACCTGAAATCAGTT 58.919 39.130 9.43 0.00 42.27 3.16
817 853 3.689347 TGCAAGCATACCTGAAATCAGT 58.311 40.909 9.43 1.22 42.27 3.41
818 854 4.707030 TTGCAAGCATACCTGAAATCAG 57.293 40.909 0.00 3.37 43.40 2.90
819 855 4.678574 GCATTGCAAGCATACCTGAAATCA 60.679 41.667 4.94 0.00 0.00 2.57
820 856 3.800506 GCATTGCAAGCATACCTGAAATC 59.199 43.478 4.94 0.00 0.00 2.17
821 857 3.196039 TGCATTGCAAGCATACCTGAAAT 59.804 39.130 9.33 0.00 37.02 2.17
822 858 2.561858 TGCATTGCAAGCATACCTGAAA 59.438 40.909 9.33 0.00 37.02 2.69
823 859 2.164827 CTGCATTGCAAGCATACCTGAA 59.835 45.455 19.29 0.03 41.82 3.02
824 860 1.746787 CTGCATTGCAAGCATACCTGA 59.253 47.619 19.29 1.13 41.82 3.86
825 861 1.202371 CCTGCATTGCAAGCATACCTG 60.202 52.381 19.29 6.78 41.82 4.00
826 862 1.108776 CCTGCATTGCAAGCATACCT 58.891 50.000 19.29 0.00 41.82 3.08
827 863 1.105457 TCCTGCATTGCAAGCATACC 58.895 50.000 19.29 0.40 41.82 2.73
828 864 3.607775 CGTATCCTGCATTGCAAGCATAC 60.608 47.826 19.29 15.59 41.82 2.39
829 865 2.549329 CGTATCCTGCATTGCAAGCATA 59.451 45.455 19.29 13.13 41.82 3.14
836 872 3.832276 TGTTTTTCGTATCCTGCATTGC 58.168 40.909 0.46 0.46 0.00 3.56
851 887 1.381522 ACGTGCCGGTAGTTGTTTTT 58.618 45.000 1.90 0.00 0.00 1.94
903 939 3.943034 TTTGACGCGGCCACAACG 61.943 61.111 10.82 2.83 0.00 4.10
911 949 2.742372 CCTCTGGGTTTGACGCGG 60.742 66.667 12.47 0.00 38.61 6.46
914 952 4.261888 CGTCCTCTGGGTTTGACG 57.738 61.111 0.00 0.00 43.64 4.35
1212 1256 1.204146 GGTGCAGAAGAGGATGGGTA 58.796 55.000 0.00 0.00 0.00 3.69
1215 1259 1.139853 GGTAGGTGCAGAAGAGGATGG 59.860 57.143 0.00 0.00 0.00 3.51
1217 1261 2.114616 CAGGTAGGTGCAGAAGAGGAT 58.885 52.381 0.00 0.00 0.00 3.24
1262 1306 2.939756 TCGTCTCTCTTGGATCGAGAAG 59.060 50.000 0.00 2.46 37.10 2.85
1268 1312 3.131223 TCCAACATCGTCTCTCTTGGATC 59.869 47.826 0.00 0.00 36.33 3.36
1369 1413 0.878961 GACTTGCGGAGTTTGTCGGT 60.879 55.000 0.00 0.00 39.19 4.69
1426 1482 4.991153 TGTAATGTTTGCCACAAGTGAA 57.009 36.364 0.94 0.00 39.50 3.18
1562 1631 2.159824 CGGCTATGATATCACTCGTCGT 59.840 50.000 7.78 0.00 0.00 4.34
1665 1751 6.257849 CGAACTAACAGATAGGCAATTAAGCA 59.742 38.462 0.00 0.00 35.81 3.91
1683 1769 2.811855 TGTGAGCGACAAACGAACTAA 58.188 42.857 0.00 0.00 45.77 2.24
1790 1948 6.831976 ACCTACTCTTTCAGTTGACAGATTT 58.168 36.000 0.00 0.00 36.43 2.17
1792 1950 5.540337 TGACCTACTCTTTCAGTTGACAGAT 59.460 40.000 0.00 0.00 36.43 2.90
1834 1999 9.269453 ACAACACTAGTTTGGAAGTATAAGTTC 57.731 33.333 16.79 0.00 35.28 3.01
1838 2003 7.927629 ACGAACAACACTAGTTTGGAAGTATAA 59.072 33.333 16.79 0.00 35.28 0.98
1971 2149 7.255139 GGAAAGCTGTTAAACTACACTGTTGAT 60.255 37.037 0.00 0.00 0.00 2.57
1972 2150 6.037830 GGAAAGCTGTTAAACTACACTGTTGA 59.962 38.462 0.00 0.00 0.00 3.18
1973 2151 6.183360 TGGAAAGCTGTTAAACTACACTGTTG 60.183 38.462 0.00 0.00 0.00 3.33
1974 2152 5.883673 TGGAAAGCTGTTAAACTACACTGTT 59.116 36.000 0.00 0.00 0.00 3.16
1975 2153 5.433526 TGGAAAGCTGTTAAACTACACTGT 58.566 37.500 0.00 0.00 0.00 3.55
1976 2154 6.560253 ATGGAAAGCTGTTAAACTACACTG 57.440 37.500 0.00 0.00 0.00 3.66
1977 2155 6.546034 ACAATGGAAAGCTGTTAAACTACACT 59.454 34.615 0.00 0.00 0.00 3.55
2021 2199 1.348036 AGGTAGACTTTGGAGCGCTTT 59.652 47.619 13.26 0.00 0.00 3.51
2022 2200 0.977395 AGGTAGACTTTGGAGCGCTT 59.023 50.000 13.26 0.00 0.00 4.68
2023 2201 0.247736 CAGGTAGACTTTGGAGCGCT 59.752 55.000 11.27 11.27 0.00 5.92
2024 2202 0.741221 CCAGGTAGACTTTGGAGCGC 60.741 60.000 0.00 0.00 33.76 5.92
2025 2203 0.741221 GCCAGGTAGACTTTGGAGCG 60.741 60.000 7.61 0.00 33.76 5.03
2026 2204 0.324943 TGCCAGGTAGACTTTGGAGC 59.675 55.000 7.61 0.00 33.76 4.70
2027 2205 2.026822 ACATGCCAGGTAGACTTTGGAG 60.027 50.000 0.00 1.33 33.76 3.86
2028 2206 1.985159 ACATGCCAGGTAGACTTTGGA 59.015 47.619 0.00 0.00 33.76 3.53
2029 2207 2.496899 ACATGCCAGGTAGACTTTGG 57.503 50.000 0.00 1.00 35.06 3.28
2030 2208 4.853924 AAAACATGCCAGGTAGACTTTG 57.146 40.909 0.00 0.00 0.00 2.77
2057 2235 7.417612 CGAATTCCCACAGATAATGTTTTAGG 58.582 38.462 0.00 0.00 41.41 2.69
2067 2245 4.955811 ATACAGCGAATTCCCACAGATA 57.044 40.909 0.00 0.00 0.00 1.98
2160 2338 2.293399 GCTTCAAAACTGGGTCAATCGT 59.707 45.455 0.00 0.00 0.00 3.73
2179 2357 3.261897 CCTCAAACGATATATGGGGAGCT 59.738 47.826 0.00 0.00 36.81 4.09
2180 2358 3.008049 ACCTCAAACGATATATGGGGAGC 59.992 47.826 0.00 0.00 36.81 4.70
2181 2359 4.891992 ACCTCAAACGATATATGGGGAG 57.108 45.455 0.00 2.31 36.81 4.30
2182 2360 4.656575 TGAACCTCAAACGATATATGGGGA 59.343 41.667 0.00 0.00 36.81 4.81
2184 2362 6.486657 ACAATGAACCTCAAACGATATATGGG 59.513 38.462 0.00 0.00 0.00 4.00
2244 2424 6.401474 GCCGTTATACAGAATACATGCTCATG 60.401 42.308 8.21 8.21 44.15 3.07
2342 2522 8.999431 GTTCTTTTCCTGTGACATGAAACTATA 58.001 33.333 14.19 1.49 30.30 1.31
2478 2658 2.563179 GGAGCTGTAACTTGGTCAGAGA 59.437 50.000 0.00 0.00 32.93 3.10
2485 2665 1.160137 GCACAGGAGCTGTAACTTGG 58.840 55.000 0.00 0.00 43.43 3.61
2723 2904 8.740906 GCATACATTAGAGCCAGTCTACTATTA 58.259 37.037 0.00 0.00 37.51 0.98
2724 2905 7.453126 AGCATACATTAGAGCCAGTCTACTATT 59.547 37.037 0.00 0.00 37.51 1.73
2862 3043 5.865085 AGCCACTCTTTGTAAGTTCACATA 58.135 37.500 0.00 0.00 0.00 2.29
2863 3044 4.718961 AGCCACTCTTTGTAAGTTCACAT 58.281 39.130 0.00 0.00 0.00 3.21
2894 3075 4.646492 AGTCAAAACAGCCAGAAAACTGAT 59.354 37.500 0.00 0.00 37.35 2.90
3019 3236 3.070734 CCTATGTTCAGTAGCAGAGGCAT 59.929 47.826 0.00 0.00 44.61 4.40
3056 3273 0.694771 TCAGAGGAGCAGCATTTGGT 59.305 50.000 0.00 0.00 41.02 3.67
3088 3311 2.799126 TTCGCAATACATGGGGTTCT 57.201 45.000 0.00 0.00 42.03 3.01
3089 3312 3.859411 TTTTCGCAATACATGGGGTTC 57.141 42.857 0.00 0.00 42.03 3.62
3090 3313 3.576550 AGTTTTTCGCAATACATGGGGTT 59.423 39.130 0.00 0.00 42.03 4.11
3092 3315 3.192422 TCAGTTTTTCGCAATACATGGGG 59.808 43.478 0.00 0.00 42.03 4.96
3104 3327 2.802816 CTCCTGACCACTCAGTTTTTCG 59.197 50.000 0.00 0.00 42.36 3.46
3107 3330 2.370189 CCTCTCCTGACCACTCAGTTTT 59.630 50.000 0.00 0.00 42.36 2.43
3108 3331 1.974236 CCTCTCCTGACCACTCAGTTT 59.026 52.381 0.00 0.00 42.36 2.66
3166 3397 1.005294 GCAAGTGTTCGCAAGCCATG 61.005 55.000 0.00 0.00 37.18 3.66
3176 3407 4.266265 GCAGAAAAACAAGAGCAAGTGTTC 59.734 41.667 0.18 0.00 36.97 3.18
3206 3437 3.056821 GGCCCCAAATCAAACTGTAACTC 60.057 47.826 0.00 0.00 0.00 3.01
3211 3442 1.632589 GAGGCCCCAAATCAAACTGT 58.367 50.000 0.00 0.00 0.00 3.55
3214 3445 0.526211 GACGAGGCCCCAAATCAAAC 59.474 55.000 0.00 0.00 0.00 2.93
3274 3505 2.191815 TGCCAATCGAAATTGATGCG 57.808 45.000 0.26 0.00 44.25 4.73
3294 3525 1.879380 CGACACAAATTCAGAAGGCCA 59.121 47.619 5.01 0.00 0.00 5.36
3315 3604 4.319177 ACTCTTGTCCCTCGAATTGAAAG 58.681 43.478 0.00 0.00 0.00 2.62
3321 3610 1.746220 CTCGACTCTTGTCCCTCGAAT 59.254 52.381 0.00 0.00 39.94 3.34
3355 3644 9.554395 TTTCATTTCGAGCAACCTGATAATATA 57.446 29.630 0.00 0.00 0.00 0.86
3366 3655 3.626028 AGTGGTTTCATTTCGAGCAAC 57.374 42.857 0.00 0.00 0.00 4.17
3388 3678 4.503910 TCTGGTAGTCGAATTTGTCCATG 58.496 43.478 0.00 0.00 0.00 3.66
3418 3708 9.595823 GGAGCTCACTGTTTATAGTTAACATAA 57.404 33.333 17.19 7.27 35.18 1.90
3428 3718 3.512329 TGTTCGGGAGCTCACTGTTTATA 59.488 43.478 15.40 0.00 0.00 0.98
3429 3719 2.301870 TGTTCGGGAGCTCACTGTTTAT 59.698 45.455 15.40 0.00 0.00 1.40
3452 3742 2.322161 CAAGTTGCTTCTGAAATGGCG 58.678 47.619 0.00 0.00 0.00 5.69
3472 3764 1.072965 AGGAGCTAGTGGCATTATGGC 59.927 52.381 12.03 12.03 44.79 4.40
3473 3765 2.775890 CAGGAGCTAGTGGCATTATGG 58.224 52.381 0.00 0.00 44.79 2.74
3474 3766 2.149578 GCAGGAGCTAGTGGCATTATG 58.850 52.381 0.00 0.00 44.79 1.90
3475 3767 2.557920 GCAGGAGCTAGTGGCATTAT 57.442 50.000 0.00 0.00 44.79 1.28
3477 3769 4.972875 GCAGGAGCTAGTGGCATT 57.027 55.556 0.00 0.00 44.79 3.56
3544 3849 5.316987 TCCCTTGTTTCCTGAGAAAAGATC 58.683 41.667 0.00 0.00 43.48 2.75
3580 3885 0.603569 AGATGAAGTCACCGTCGCTT 59.396 50.000 0.00 0.00 0.00 4.68
3581 3886 1.402259 CTAGATGAAGTCACCGTCGCT 59.598 52.381 0.00 0.00 0.00 4.93
3625 3937 0.468214 CTGAGGATGCCGGTAGGAGA 60.468 60.000 1.90 0.00 41.02 3.71
3637 3949 0.976641 TGTTCTTGACGCCTGAGGAT 59.023 50.000 0.65 0.00 0.00 3.24
3649 3961 0.388649 CGACGAGGAGGGTGTTCTTG 60.389 60.000 0.00 0.00 0.00 3.02
3659 3971 4.796231 CCGGGTTGCGACGAGGAG 62.796 72.222 10.09 0.00 0.00 3.69
3695 4007 2.203294 GCTGGTGGTTTCCGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
3698 4010 2.594592 GCAGCTGGTGGTTTCCGT 60.595 61.111 17.12 0.00 0.00 4.69
3730 4042 1.155424 TCTCACGCCGTGTTGTTTCC 61.155 55.000 17.83 0.00 34.79 3.13
3737 4049 2.356313 CAAGCTCTCACGCCGTGT 60.356 61.111 17.83 0.00 34.79 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.