Multiple sequence alignment - TraesCS1B01G219600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G219600 chr1B 100.000 3864 0 0 1 3864 396605113 396608976 0.000000e+00 7136.0
1 TraesCS1B01G219600 chr1D 91.403 1454 70 19 1 1422 295280384 295281814 0.000000e+00 1941.0
2 TraesCS1B01G219600 chr1D 91.605 1358 70 23 2356 3681 295282734 295284079 0.000000e+00 1836.0
3 TraesCS1B01G219600 chr1D 87.375 499 30 15 1505 1978 295281942 295282432 3.400000e-150 542.0
4 TraesCS1B01G219600 chr1D 91.694 301 19 4 2019 2314 295282432 295282731 2.780000e-111 412.0
5 TraesCS1B01G219600 chr1A 92.755 1049 46 12 2356 3380 368383869 368384911 0.000000e+00 1489.0
6 TraesCS1B01G219600 chr1A 94.628 484 20 4 1836 2314 368383384 368383866 0.000000e+00 745.0
7 TraesCS1B01G219600 chr1A 86.709 316 31 5 3403 3714 368384895 368385203 1.330000e-89 340.0
8 TraesCS1B01G219600 chr1A 98.113 53 1 0 1739 1791 368383324 368383376 4.110000e-15 93.5
9 TraesCS1B01G219600 chr7D 85.185 270 35 5 423 689 58622661 58622928 4.920000e-69 272.0
10 TraesCS1B01G219600 chr7A 84.307 274 36 7 423 692 62883483 62883753 1.060000e-65 261.0
11 TraesCS1B01G219600 chr5A 84.364 275 33 10 423 692 641056752 641056483 1.060000e-65 261.0
12 TraesCS1B01G219600 chr5A 84.249 273 32 10 423 690 645126325 645126059 4.950000e-64 255.0
13 TraesCS1B01G219600 chr4A 87.611 226 23 5 470 692 675160086 675160309 1.380000e-64 257.0
14 TraesCS1B01G219600 chr4A 86.667 225 27 3 470 692 675219290 675219513 2.980000e-61 246.0
15 TraesCS1B01G219600 chr4A 86.222 225 28 3 470 692 675276818 675277041 1.390000e-59 241.0
16 TraesCS1B01G219600 chr5D 89.655 203 17 4 505 705 512894400 512894200 4.950000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G219600 chr1B 396605113 396608976 3863 False 7136.000 7136 100.00000 1 3864 1 chr1B.!!$F1 3863
1 TraesCS1B01G219600 chr1D 295280384 295284079 3695 False 1182.750 1941 90.51925 1 3681 4 chr1D.!!$F1 3680
2 TraesCS1B01G219600 chr1A 368383324 368385203 1879 False 666.875 1489 93.05125 1739 3714 4 chr1A.!!$F1 1975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 615 0.035458 GTTGGCCTATCATCTCCCCG 59.965 60.0 3.32 0.0 0.00 5.73 F
1085 1115 0.384309 GCCATCATCGACGTCAGGTA 59.616 55.0 17.16 0.0 0.00 3.08 F
1545 1646 0.519519 TGTTGGAATTAACGGCTGCG 59.480 50.0 0.00 0.0 33.28 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1680 0.171455 AACTGAACCTAGCGCTCGAG 59.829 55.000 16.34 8.45 0.00 4.04 R
2068 2194 0.890683 GGCAAGGTGGGACAAATGAG 59.109 55.000 0.00 0.00 44.16 2.90 R
3183 3333 1.202964 TGGGATTGCATAGCTCCATGG 60.203 52.381 4.97 4.97 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 70 2.447070 GGTAACGCACTAACCGCCG 61.447 63.158 0.00 0.00 0.00 6.46
62 72 3.570621 TAACGCACTAACCGCCGCA 62.571 57.895 0.00 0.00 0.00 5.69
350 362 2.983879 CGGGCCTGGGGAAACATCT 61.984 63.158 2.57 0.00 0.00 2.90
487 499 0.880718 GCTACATAAGGAGCGGCACC 60.881 60.000 8.52 8.52 0.00 5.01
488 500 0.753262 CTACATAAGGAGCGGCACCT 59.247 55.000 13.52 13.52 39.69 4.00
489 501 0.464036 TACATAAGGAGCGGCACCTG 59.536 55.000 19.80 10.79 37.85 4.00
490 502 1.221840 CATAAGGAGCGGCACCTGT 59.778 57.895 19.80 11.95 37.85 4.00
492 504 1.264749 ATAAGGAGCGGCACCTGTCA 61.265 55.000 19.80 8.70 37.85 3.58
516 528 6.290294 ACGTTGTAACATACTTACCTGGAT 57.710 37.500 0.00 0.00 0.00 3.41
526 538 0.252330 TTACCTGGATGGGGTCGACA 60.252 55.000 18.91 0.00 41.11 4.35
529 541 1.990060 CTGGATGGGGTCGACAGGT 60.990 63.158 18.91 0.00 0.00 4.00
561 573 1.819632 CGTGGCCTAGGTCAATGGC 60.820 63.158 19.95 4.43 45.42 4.40
603 615 0.035458 GTTGGCCTATCATCTCCCCG 59.965 60.000 3.32 0.00 0.00 5.73
629 641 4.218200 TGGGAGAGTGAACGTCGTAATTTA 59.782 41.667 0.00 0.00 0.00 1.40
643 656 6.071728 CGTCGTAATTTATGGTAGAGGGGTAT 60.072 42.308 0.00 0.00 0.00 2.73
648 661 1.339097 ATGGTAGAGGGGTATGCGTC 58.661 55.000 0.00 0.00 0.00 5.19
719 733 4.501071 GGGCGTGTCTCAGTTTATTCTTA 58.499 43.478 0.00 0.00 0.00 2.10
731 745 9.495572 CTCAGTTTATTCTTAAGGTCTGAAAGT 57.504 33.333 1.85 0.00 33.76 2.66
742 756 8.810990 TTAAGGTCTGAAAGTTTCCTGTAAAA 57.189 30.769 13.01 0.00 33.05 1.52
746 760 8.758829 AGGTCTGAAAGTTTCCTGTAAAATTTT 58.241 29.630 13.01 8.75 43.36 1.82
774 788 9.635404 TTTTCATCCTTTAGACCTTGTTTCTAA 57.365 29.630 0.00 0.00 34.43 2.10
777 791 8.826765 TCATCCTTTAGACCTTGTTTCTAAGAT 58.173 33.333 0.00 0.00 36.99 2.40
778 792 9.454859 CATCCTTTAGACCTTGTTTCTAAGATT 57.545 33.333 0.00 0.00 36.99 2.40
848 865 3.350219 TTCATTTGAGACCCTACAGCC 57.650 47.619 0.00 0.00 0.00 4.85
898 925 6.791303 TGGATACATTAAAGTGCGAATTTCC 58.209 36.000 0.00 0.00 46.17 3.13
909 936 4.453819 AGTGCGAATTTCCTGAAGAGAAAG 59.546 41.667 0.00 0.00 36.71 2.62
910 937 4.452455 GTGCGAATTTCCTGAAGAGAAAGA 59.548 41.667 0.00 0.00 36.71 2.52
911 938 5.049405 GTGCGAATTTCCTGAAGAGAAAGAA 60.049 40.000 0.00 0.00 36.71 2.52
912 939 5.530915 TGCGAATTTCCTGAAGAGAAAGAAA 59.469 36.000 0.00 0.00 36.71 2.52
913 940 6.082984 GCGAATTTCCTGAAGAGAAAGAAAG 58.917 40.000 0.00 0.00 36.71 2.62
914 941 6.082984 CGAATTTCCTGAAGAGAAAGAAAGC 58.917 40.000 0.00 0.00 36.71 3.51
915 942 5.619625 ATTTCCTGAAGAGAAAGAAAGCG 57.380 39.130 0.00 0.00 36.71 4.68
963 993 3.053455 GGATCTCAATCCGAAAGCGTAG 58.947 50.000 0.00 0.00 42.16 3.51
984 1014 4.369872 AGACAGAGGGAGGAAGATTTGAT 58.630 43.478 0.00 0.00 0.00 2.57
1035 1065 4.764336 TACGTGTCGGCGGCGAAG 62.764 66.667 36.31 28.87 35.98 3.79
1085 1115 0.384309 GCCATCATCGACGTCAGGTA 59.616 55.000 17.16 0.00 0.00 3.08
1093 1123 1.955778 TCGACGTCAGGTAAACAGGAA 59.044 47.619 17.16 0.00 0.00 3.36
1147 1178 1.742146 CCGATTCGGGAGCTGATGA 59.258 57.895 17.53 0.00 44.15 2.92
1151 1182 2.804572 CGATTCGGGAGCTGATGATTGT 60.805 50.000 0.00 0.00 0.00 2.71
1153 1184 2.787473 TCGGGAGCTGATGATTGTTT 57.213 45.000 0.00 0.00 0.00 2.83
1185 1216 3.505386 GGATGAGGAGAGGAGCTATCAA 58.495 50.000 0.00 0.00 0.00 2.57
1317 1348 2.190578 CAGGTGAAGATCCCCGCC 59.809 66.667 6.46 6.46 0.00 6.13
1318 1349 2.041265 AGGTGAAGATCCCCGCCT 59.959 61.111 10.34 10.34 38.38 5.52
1333 1364 0.882927 CGCCTCCTCTCGTCTCTAGG 60.883 65.000 0.00 0.00 0.00 3.02
1341 1372 2.940410 CTCTCGTCTCTAGGACCAGTTC 59.060 54.545 0.00 0.00 41.64 3.01
1404 1437 3.791973 ATCAGATTCTCGACACAGACC 57.208 47.619 0.00 0.00 0.00 3.85
1422 1455 4.505217 GCACTGCGCAATCGACCG 62.505 66.667 13.05 0.00 41.79 4.79
1423 1456 3.853330 CACTGCGCAATCGACCGG 61.853 66.667 13.05 0.00 38.10 5.28
1427 1460 4.814294 GCGCAATCGACCGGGTCT 62.814 66.667 23.86 4.29 38.10 3.85
1428 1461 2.582498 CGCAATCGACCGGGTCTC 60.582 66.667 23.86 7.66 38.10 3.36
1429 1462 2.202892 GCAATCGACCGGGTCTCC 60.203 66.667 23.86 0.00 0.00 3.71
1431 1464 1.389609 GCAATCGACCGGGTCTCCTA 61.390 60.000 23.86 8.04 0.00 2.94
1433 1466 1.269998 CAATCGACCGGGTCTCCTATC 59.730 57.143 23.86 0.00 0.00 2.08
1436 1469 1.505477 CGACCGGGTCTCCTATCGAC 61.505 65.000 23.86 0.00 39.15 4.20
1465 1566 3.483808 GGAACCTTGGCCAAAATTTCA 57.516 42.857 20.91 0.00 0.00 2.69
1468 1569 3.701205 ACCTTGGCCAAAATTTCATCC 57.299 42.857 20.91 0.00 0.00 3.51
1472 1573 1.548269 TGGCCAAAATTTCATCCGGTC 59.452 47.619 0.61 0.00 0.00 4.79
1477 1578 4.321974 GCCAAAATTTCATCCGGTCTTCTT 60.322 41.667 0.00 0.00 0.00 2.52
1478 1579 5.402398 CCAAAATTTCATCCGGTCTTCTTC 58.598 41.667 0.00 0.00 0.00 2.87
1479 1580 5.183904 CCAAAATTTCATCCGGTCTTCTTCT 59.816 40.000 0.00 0.00 0.00 2.85
1481 1582 5.428184 AATTTCATCCGGTCTTCTTCTCT 57.572 39.130 0.00 0.00 0.00 3.10
1482 1583 4.457834 TTTCATCCGGTCTTCTTCTCTC 57.542 45.455 0.00 0.00 0.00 3.20
1483 1584 2.379972 TCATCCGGTCTTCTTCTCTCC 58.620 52.381 0.00 0.00 0.00 3.71
1484 1585 2.024846 TCATCCGGTCTTCTTCTCTCCT 60.025 50.000 0.00 0.00 0.00 3.69
1485 1586 3.202373 TCATCCGGTCTTCTTCTCTCCTA 59.798 47.826 0.00 0.00 0.00 2.94
1486 1587 3.284793 TCCGGTCTTCTTCTCTCCTAG 57.715 52.381 0.00 0.00 0.00 3.02
1487 1588 2.577105 TCCGGTCTTCTTCTCTCCTAGT 59.423 50.000 0.00 0.00 0.00 2.57
1488 1589 3.010361 TCCGGTCTTCTTCTCTCCTAGTT 59.990 47.826 0.00 0.00 0.00 2.24
1489 1590 4.226846 TCCGGTCTTCTTCTCTCCTAGTTA 59.773 45.833 0.00 0.00 0.00 2.24
1490 1591 4.948621 CCGGTCTTCTTCTCTCCTAGTTAA 59.051 45.833 0.00 0.00 0.00 2.01
1491 1592 5.595133 CCGGTCTTCTTCTCTCCTAGTTAAT 59.405 44.000 0.00 0.00 0.00 1.40
1492 1593 6.097129 CCGGTCTTCTTCTCTCCTAGTTAATT 59.903 42.308 0.00 0.00 0.00 1.40
1493 1594 7.284944 CCGGTCTTCTTCTCTCCTAGTTAATTA 59.715 40.741 0.00 0.00 0.00 1.40
1494 1595 8.347035 CGGTCTTCTTCTCTCCTAGTTAATTAG 58.653 40.741 0.00 0.00 0.00 1.73
1495 1596 8.139350 GGTCTTCTTCTCTCCTAGTTAATTAGC 58.861 40.741 0.00 0.00 0.00 3.09
1496 1597 8.909923 GTCTTCTTCTCTCCTAGTTAATTAGCT 58.090 37.037 7.05 7.05 0.00 3.32
1497 1598 9.127277 TCTTCTTCTCTCCTAGTTAATTAGCTC 57.873 37.037 4.97 0.00 0.00 4.09
1498 1599 7.499321 TCTTCTCTCCTAGTTAATTAGCTCG 57.501 40.000 4.97 0.00 0.00 5.03
1499 1600 7.055378 TCTTCTCTCCTAGTTAATTAGCTCGT 58.945 38.462 4.97 0.00 0.00 4.18
1500 1601 7.556996 TCTTCTCTCCTAGTTAATTAGCTCGTT 59.443 37.037 4.97 0.00 0.00 3.85
1501 1602 7.642082 TCTCTCCTAGTTAATTAGCTCGTTT 57.358 36.000 4.97 0.00 0.00 3.60
1502 1603 7.481642 TCTCTCCTAGTTAATTAGCTCGTTTG 58.518 38.462 4.97 0.00 0.00 2.93
1503 1604 7.122353 TCTCTCCTAGTTAATTAGCTCGTTTGT 59.878 37.037 4.97 0.00 0.00 2.83
1528 1629 2.435372 TTGAAGCCCTGTGACTTTGT 57.565 45.000 0.00 0.00 0.00 2.83
1538 1639 5.528870 CCCTGTGACTTTGTTGGAATTAAC 58.471 41.667 0.00 0.00 0.00 2.01
1541 1642 3.978855 GTGACTTTGTTGGAATTAACGGC 59.021 43.478 0.00 0.00 33.28 5.68
1544 1645 2.715737 TTGTTGGAATTAACGGCTGC 57.284 45.000 0.00 0.00 33.28 5.25
1545 1646 0.519519 TGTTGGAATTAACGGCTGCG 59.480 50.000 0.00 0.00 33.28 5.18
1579 1680 3.122297 TGTGTGTTAAAATGCTGCTTGC 58.878 40.909 0.00 0.00 43.25 4.01
1584 1685 3.166657 GTTAAAATGCTGCTTGCTCGAG 58.833 45.455 8.45 8.45 43.37 4.04
1586 1687 2.249557 AAATGCTGCTTGCTCGAGCG 62.250 55.000 30.75 19.30 45.64 5.03
1613 1716 6.365520 AGGTTCAGTTTTAGACACTTGGATT 58.634 36.000 0.00 0.00 0.00 3.01
1634 1737 5.486735 TTTGAATCAACAATCAGGCCATT 57.513 34.783 5.01 0.00 0.00 3.16
1650 1753 3.365969 GGCCATTTCCAGTTGTCGTTAAG 60.366 47.826 0.00 0.00 0.00 1.85
1651 1754 3.365969 GCCATTTCCAGTTGTCGTTAAGG 60.366 47.826 0.00 0.00 0.00 2.69
1652 1755 3.190535 CCATTTCCAGTTGTCGTTAAGGG 59.809 47.826 0.00 0.00 0.00 3.95
1653 1756 1.886886 TTCCAGTTGTCGTTAAGGGC 58.113 50.000 0.00 0.00 0.00 5.19
1658 1761 1.144298 AGTTGTCGTTAAGGGCCCTTT 59.856 47.619 41.23 24.67 37.47 3.11
1659 1762 1.538512 GTTGTCGTTAAGGGCCCTTTC 59.461 52.381 41.23 30.01 37.47 2.62
1664 1767 4.141869 TGTCGTTAAGGGCCCTTTCTATAC 60.142 45.833 41.23 29.00 37.47 1.47
1665 1768 3.068590 TCGTTAAGGGCCCTTTCTATACG 59.931 47.826 41.23 33.95 37.47 3.06
1791 1914 1.366435 ACCCACCTCTTCTACCTGGAT 59.634 52.381 0.00 0.00 0.00 3.41
1792 1915 2.043227 CCCACCTCTTCTACCTGGATC 58.957 57.143 0.00 0.00 0.00 3.36
1793 1916 2.043227 CCACCTCTTCTACCTGGATCC 58.957 57.143 4.20 4.20 0.00 3.36
1794 1917 2.359781 CCACCTCTTCTACCTGGATCCT 60.360 54.545 14.23 0.00 0.00 3.24
1795 1918 2.697751 CACCTCTTCTACCTGGATCCTG 59.302 54.545 14.23 12.81 0.00 3.86
1796 1919 2.324541 CCTCTTCTACCTGGATCCTGG 58.675 57.143 30.66 30.66 40.33 4.45
1797 1920 2.091055 CCTCTTCTACCTGGATCCTGGA 60.091 54.545 36.81 21.85 38.26 3.86
1806 1929 2.780010 CCTGGATCCTGGAACATACCTT 59.220 50.000 29.22 0.00 38.20 3.50
1820 1943 9.308000 TGGAACATACCTTGAAGAAATATTGTT 57.692 29.630 0.00 0.00 0.00 2.83
1837 1960 9.725019 AAATATTGTTCTCAGTCAATGTAGTCA 57.275 29.630 7.68 0.00 36.06 3.41
1959 2085 6.030228 GTGTATCAAAAGTCAGCTTTATGCC 58.970 40.000 0.00 0.00 43.52 4.40
2018 2144 4.818534 CATAATTGTATGCAGGCTTCGT 57.181 40.909 0.00 0.00 31.07 3.85
2068 2194 4.965200 AGTGGTTCAAGCCTAGGATATC 57.035 45.455 14.75 0.00 0.00 1.63
2101 2228 2.038557 ACCTTGCCAGTAGTAACCACAG 59.961 50.000 0.00 0.00 0.00 3.66
2105 2232 2.280628 GCCAGTAGTAACCACAGATGC 58.719 52.381 0.00 0.00 0.00 3.91
2179 2306 3.008704 AGGGGTAAATGTAACGTGAGCTT 59.991 43.478 0.00 0.00 0.00 3.74
2314 2444 4.362279 TGCATGTTCTGTTTCTTGCTTTC 58.638 39.130 0.00 0.00 36.27 2.62
2316 2446 5.299028 TGCATGTTCTGTTTCTTGCTTTCTA 59.701 36.000 0.00 0.00 36.27 2.10
2317 2447 6.016024 TGCATGTTCTGTTTCTTGCTTTCTAT 60.016 34.615 0.00 0.00 36.27 1.98
2318 2448 6.307318 GCATGTTCTGTTTCTTGCTTTCTATG 59.693 38.462 0.00 0.00 33.79 2.23
2319 2449 6.317789 TGTTCTGTTTCTTGCTTTCTATGG 57.682 37.500 0.00 0.00 0.00 2.74
2320 2450 5.157067 GTTCTGTTTCTTGCTTTCTATGGC 58.843 41.667 0.00 0.00 0.00 4.40
2321 2451 4.655963 TCTGTTTCTTGCTTTCTATGGCT 58.344 39.130 0.00 0.00 0.00 4.75
2322 2452 5.804639 TCTGTTTCTTGCTTTCTATGGCTA 58.195 37.500 0.00 0.00 0.00 3.93
2323 2453 6.237901 TCTGTTTCTTGCTTTCTATGGCTAA 58.762 36.000 0.00 0.00 0.00 3.09
2324 2454 6.886459 TCTGTTTCTTGCTTTCTATGGCTAAT 59.114 34.615 0.00 0.00 0.00 1.73
2325 2455 8.046708 TCTGTTTCTTGCTTTCTATGGCTAATA 58.953 33.333 0.00 0.00 0.00 0.98
2326 2456 8.752005 TGTTTCTTGCTTTCTATGGCTAATAT 57.248 30.769 0.00 0.00 0.00 1.28
2327 2457 8.623903 TGTTTCTTGCTTTCTATGGCTAATATG 58.376 33.333 0.00 0.00 0.00 1.78
2328 2458 8.624776 GTTTCTTGCTTTCTATGGCTAATATGT 58.375 33.333 0.00 0.00 0.00 2.29
2329 2459 8.752005 TTCTTGCTTTCTATGGCTAATATGTT 57.248 30.769 0.00 0.00 0.00 2.71
2330 2460 8.158169 TCTTGCTTTCTATGGCTAATATGTTG 57.842 34.615 0.00 0.00 0.00 3.33
2331 2461 6.317789 TGCTTTCTATGGCTAATATGTTGC 57.682 37.500 0.00 0.00 0.00 4.17
2332 2462 5.241506 TGCTTTCTATGGCTAATATGTTGCC 59.758 40.000 8.15 8.15 46.26 4.52
2341 2471 6.407475 GGCTAATATGTTGCCAAAAACTTG 57.593 37.500 9.62 0.00 45.46 3.16
2342 2472 5.351189 GGCTAATATGTTGCCAAAAACTTGG 59.649 40.000 9.62 0.00 45.46 3.61
2343 2473 5.931724 GCTAATATGTTGCCAAAAACTTGGT 59.068 36.000 5.82 0.00 43.90 3.67
2344 2474 6.128580 GCTAATATGTTGCCAAAAACTTGGTG 60.129 38.462 5.82 0.00 43.90 4.17
2345 2475 3.902881 ATGTTGCCAAAAACTTGGTGA 57.097 38.095 5.82 0.00 43.90 4.02
2346 2476 3.685139 TGTTGCCAAAAACTTGGTGAA 57.315 38.095 5.82 0.00 43.90 3.18
2347 2477 3.330267 TGTTGCCAAAAACTTGGTGAAC 58.670 40.909 5.82 9.04 43.90 3.18
2348 2478 3.244215 TGTTGCCAAAAACTTGGTGAACA 60.244 39.130 14.51 14.51 43.90 3.18
2349 2479 2.966050 TGCCAAAAACTTGGTGAACAC 58.034 42.857 5.82 0.00 43.90 3.32
2372 2507 8.137437 ACACCTTGAAATTGTATTGTTCTCTTG 58.863 33.333 0.00 0.00 0.00 3.02
2395 2530 7.768807 TGTAACATAAAAGGTAGTTGGCATT 57.231 32.000 0.00 0.00 0.00 3.56
2443 2578 6.918022 GCTAGCTTTAGTGTGACATTTGTTTT 59.082 34.615 7.70 0.00 0.00 2.43
2469 2604 9.173021 TCATTTAGTTAGTTCCAATGTACCATG 57.827 33.333 0.00 0.00 0.00 3.66
2473 2608 7.916914 AGTTAGTTCCAATGTACCATGTAAC 57.083 36.000 0.00 0.00 0.00 2.50
2492 2627 9.979270 CATGTAACTTTATGCTTCTAGAACTTG 57.021 33.333 0.00 0.00 0.00 3.16
2501 2636 5.126067 TGCTTCTAGAACTTGCTCTTTTGT 58.874 37.500 14.24 0.00 0.00 2.83
2532 2667 9.534565 TCTAGTGATGTTCATTTCTTAGTATGC 57.465 33.333 0.00 0.00 0.00 3.14
2607 2742 9.506018 GGTTGTTTACATAGTTAGGGTAAGAAA 57.494 33.333 0.00 0.00 0.00 2.52
2872 3007 3.870274 CACATGCTCTTGATCTTCTGGA 58.130 45.455 0.00 0.00 0.00 3.86
2873 3008 4.452825 CACATGCTCTTGATCTTCTGGAT 58.547 43.478 0.00 0.00 37.37 3.41
2907 3042 7.094377 TGGTCCATTTATACTCAGCTTTTGAAC 60.094 37.037 0.00 0.00 34.81 3.18
2915 3050 2.481568 CTCAGCTTTTGAACGATCTGCA 59.518 45.455 0.00 0.00 34.81 4.41
2957 3092 4.624843 GCTGGTCCTTTCTCATTGAGATGA 60.625 45.833 16.82 11.07 38.56 2.92
2999 3134 1.255882 TTCCGCAATGGCATGTCTTT 58.744 45.000 0.00 0.00 41.24 2.52
3093 3242 5.262588 ACCTTGTGCGAAAAATCTTCTTT 57.737 34.783 0.00 0.00 0.00 2.52
3103 3252 8.573035 TGCGAAAAATCTTCTTTAAATGTACCT 58.427 29.630 0.00 0.00 0.00 3.08
3110 3259 9.588096 AATCTTCTTTAAATGTACCTGGAAGTT 57.412 29.630 0.00 0.00 33.14 2.66
3119 3268 5.560722 TGTACCTGGAAGTTTGAAGATGA 57.439 39.130 0.00 0.00 0.00 2.92
3127 3276 6.303054 TGGAAGTTTGAAGATGATTGTACCA 58.697 36.000 0.00 0.00 0.00 3.25
3158 3308 8.860088 ACTAGGCATGTTAGTTTTTGAAGAATT 58.140 29.630 6.30 0.00 0.00 2.17
3183 3333 9.981114 TTTTCAAGTTTTATCCTCTTCATTTCC 57.019 29.630 0.00 0.00 0.00 3.13
3300 3459 9.827198 ATTCTTTCATATCAATTATTGCCCCTA 57.173 29.630 0.00 0.00 0.00 3.53
3301 3460 9.827198 TTCTTTCATATCAATTATTGCCCCTAT 57.173 29.630 0.00 0.00 0.00 2.57
3305 3464 9.905713 TTCATATCAATTATTGCCCCTATAGTC 57.094 33.333 0.00 0.00 0.00 2.59
3344 3503 8.518720 TTCCCAATATAATTGGACATAGAGGA 57.481 34.615 18.18 3.74 42.06 3.71
3382 3541 8.428186 TCCGTAACAATAAAATCTACATGGAC 57.572 34.615 0.00 0.00 0.00 4.02
3422 3581 7.373493 CAAGCACAAGAATATCTTCAACCTTT 58.627 34.615 0.00 0.00 33.78 3.11
3426 3585 7.533426 CACAAGAATATCTTCAACCTTTCCAG 58.467 38.462 0.00 0.00 33.78 3.86
3434 3593 5.511363 TCTTCAACCTTTCCAGTTGGTTTA 58.489 37.500 4.00 0.00 43.83 2.01
3444 3603 7.256154 CCTTTCCAGTTGGTTTATTTATGGTGT 60.256 37.037 0.00 0.00 36.34 4.16
3468 3627 3.674997 TCTGCCAAGTGGACATTAAGTC 58.325 45.455 0.18 0.00 46.83 3.01
3491 3650 7.040478 AGTCCACGTTTAATAAGGGGTTTTAAC 60.040 37.037 0.00 0.00 0.00 2.01
3505 3664 4.244862 GGTTTTAACCCAAGTGCATCATG 58.755 43.478 0.00 0.00 43.43 3.07
3507 3666 5.047660 GGTTTTAACCCAAGTGCATCATGTA 60.048 40.000 0.00 0.00 43.43 2.29
3522 3681 8.589629 GTGCATCATGTAGCTTTTTAGAAATTG 58.410 33.333 12.08 0.00 0.00 2.32
3545 3704 5.172687 TGGATACACTTGCACCTAAATCA 57.827 39.130 0.00 0.00 46.17 2.57
3546 3705 4.941263 TGGATACACTTGCACCTAAATCAC 59.059 41.667 0.00 0.00 46.17 3.06
3550 3709 4.655963 ACACTTGCACCTAAATCACATCT 58.344 39.130 0.00 0.00 0.00 2.90
3569 3728 7.928167 TCACATCTAGCATCATAGGTAAAGTTG 59.072 37.037 0.00 0.00 0.00 3.16
3616 3775 2.562738 CCCAACCATCTTTCAACTTCCC 59.437 50.000 0.00 0.00 0.00 3.97
3627 3786 3.893753 TCAACTTCCCAGGGATCAAAA 57.106 42.857 9.80 0.00 0.00 2.44
3665 3828 8.887036 ATTTTCCCAAACAAATAAGACAACTC 57.113 30.769 0.00 0.00 0.00 3.01
3668 3831 5.534654 TCCCAAACAAATAAGACAACTCCAG 59.465 40.000 0.00 0.00 0.00 3.86
3722 3885 6.754193 TCAACACCCTTTGAATTCATTAACC 58.246 36.000 9.40 0.00 32.42 2.85
3723 3886 6.553100 TCAACACCCTTTGAATTCATTAACCT 59.447 34.615 9.40 0.00 32.42 3.50
3724 3887 6.590234 ACACCCTTTGAATTCATTAACCTC 57.410 37.500 9.40 0.00 0.00 3.85
3725 3888 6.314917 ACACCCTTTGAATTCATTAACCTCT 58.685 36.000 9.40 0.00 0.00 3.69
3726 3889 6.782494 ACACCCTTTGAATTCATTAACCTCTT 59.218 34.615 9.40 0.00 0.00 2.85
3727 3890 7.039714 ACACCCTTTGAATTCATTAACCTCTTC 60.040 37.037 9.40 0.00 0.00 2.87
3728 3891 7.010160 ACCCTTTGAATTCATTAACCTCTTCA 58.990 34.615 9.40 0.00 0.00 3.02
3729 3892 7.508977 ACCCTTTGAATTCATTAACCTCTTCAA 59.491 33.333 9.40 0.00 32.49 2.69
3730 3893 8.367156 CCCTTTGAATTCATTAACCTCTTCAAA 58.633 33.333 9.40 13.07 39.15 2.69
3731 3894 9.196552 CCTTTGAATTCATTAACCTCTTCAAAC 57.803 33.333 9.40 0.00 37.56 2.93
3732 3895 9.196552 CTTTGAATTCATTAACCTCTTCAAACC 57.803 33.333 9.40 0.00 37.56 3.27
3733 3896 7.227049 TGAATTCATTAACCTCTTCAAACCC 57.773 36.000 3.38 0.00 0.00 4.11
3734 3897 6.780031 TGAATTCATTAACCTCTTCAAACCCA 59.220 34.615 3.38 0.00 0.00 4.51
3735 3898 6.590234 ATTCATTAACCTCTTCAAACCCAC 57.410 37.500 0.00 0.00 0.00 4.61
3736 3899 5.319043 TCATTAACCTCTTCAAACCCACT 57.681 39.130 0.00 0.00 0.00 4.00
3737 3900 5.701224 TCATTAACCTCTTCAAACCCACTT 58.299 37.500 0.00 0.00 0.00 3.16
3738 3901 6.133356 TCATTAACCTCTTCAAACCCACTTT 58.867 36.000 0.00 0.00 0.00 2.66
3739 3902 6.609616 TCATTAACCTCTTCAAACCCACTTTT 59.390 34.615 0.00 0.00 0.00 2.27
3740 3903 6.459670 TTAACCTCTTCAAACCCACTTTTC 57.540 37.500 0.00 0.00 0.00 2.29
3741 3904 4.251103 ACCTCTTCAAACCCACTTTTCT 57.749 40.909 0.00 0.00 0.00 2.52
3742 3905 4.207955 ACCTCTTCAAACCCACTTTTCTC 58.792 43.478 0.00 0.00 0.00 2.87
3743 3906 3.570125 CCTCTTCAAACCCACTTTTCTCC 59.430 47.826 0.00 0.00 0.00 3.71
3744 3907 4.207165 CTCTTCAAACCCACTTTTCTCCA 58.793 43.478 0.00 0.00 0.00 3.86
3745 3908 4.605183 TCTTCAAACCCACTTTTCTCCAA 58.395 39.130 0.00 0.00 0.00 3.53
3746 3909 5.020132 TCTTCAAACCCACTTTTCTCCAAA 58.980 37.500 0.00 0.00 0.00 3.28
3747 3910 5.482175 TCTTCAAACCCACTTTTCTCCAAAA 59.518 36.000 0.00 0.00 0.00 2.44
3748 3911 5.746990 TCAAACCCACTTTTCTCCAAAAA 57.253 34.783 0.00 0.00 30.90 1.94
3792 3955 4.810191 TTTTCTCTCTGTCTAGCCTTCC 57.190 45.455 0.00 0.00 0.00 3.46
3793 3956 3.458044 TTCTCTCTGTCTAGCCTTCCA 57.542 47.619 0.00 0.00 0.00 3.53
3794 3957 2.729194 TCTCTCTGTCTAGCCTTCCAC 58.271 52.381 0.00 0.00 0.00 4.02
3795 3958 1.754226 CTCTCTGTCTAGCCTTCCACC 59.246 57.143 0.00 0.00 0.00 4.61
3796 3959 1.359474 TCTCTGTCTAGCCTTCCACCT 59.641 52.381 0.00 0.00 0.00 4.00
3797 3960 2.183679 CTCTGTCTAGCCTTCCACCTT 58.816 52.381 0.00 0.00 0.00 3.50
3798 3961 1.902508 TCTGTCTAGCCTTCCACCTTG 59.097 52.381 0.00 0.00 0.00 3.61
3799 3962 0.984230 TGTCTAGCCTTCCACCTTGG 59.016 55.000 0.00 0.00 39.43 3.61
3800 3963 1.276622 GTCTAGCCTTCCACCTTGGA 58.723 55.000 0.00 0.00 46.61 3.53
3809 3972 0.618458 TCCACCTTGGAGTACCATGC 59.382 55.000 0.00 0.00 42.67 4.06
3810 3973 0.327924 CCACCTTGGAGTACCATGCA 59.672 55.000 0.00 0.00 46.34 3.96
3811 3974 1.064463 CCACCTTGGAGTACCATGCAT 60.064 52.381 0.00 0.00 46.34 3.96
3812 3975 2.172505 CCACCTTGGAGTACCATGCATA 59.827 50.000 0.00 0.00 46.34 3.14
3813 3976 3.371487 CCACCTTGGAGTACCATGCATAA 60.371 47.826 0.00 0.00 46.34 1.90
3814 3977 4.269183 CACCTTGGAGTACCATGCATAAA 58.731 43.478 0.00 0.00 46.34 1.40
3815 3978 4.336433 CACCTTGGAGTACCATGCATAAAG 59.664 45.833 0.00 0.00 46.34 1.85
3816 3979 4.018415 ACCTTGGAGTACCATGCATAAAGT 60.018 41.667 0.00 0.00 46.34 2.66
3817 3980 4.576463 CCTTGGAGTACCATGCATAAAGTC 59.424 45.833 0.00 0.11 46.34 3.01
3818 3981 5.431765 CTTGGAGTACCATGCATAAAGTCT 58.568 41.667 0.00 0.00 46.34 3.24
3819 3982 5.023533 TGGAGTACCATGCATAAAGTCTC 57.976 43.478 0.00 4.38 41.77 3.36
3820 3983 4.469586 TGGAGTACCATGCATAAAGTCTCA 59.530 41.667 0.00 0.00 41.77 3.27
3821 3984 5.130975 TGGAGTACCATGCATAAAGTCTCAT 59.869 40.000 0.00 0.00 41.77 2.90
3822 3985 5.698545 GGAGTACCATGCATAAAGTCTCATC 59.301 44.000 0.00 0.00 35.97 2.92
3823 3986 6.239217 AGTACCATGCATAAAGTCTCATCA 57.761 37.500 0.00 0.00 0.00 3.07
3824 3987 6.051717 AGTACCATGCATAAAGTCTCATCAC 58.948 40.000 0.00 0.00 0.00 3.06
3825 3988 4.202441 ACCATGCATAAAGTCTCATCACC 58.798 43.478 0.00 0.00 0.00 4.02
3826 3989 4.080129 ACCATGCATAAAGTCTCATCACCT 60.080 41.667 0.00 0.00 0.00 4.00
3827 3990 4.885907 CCATGCATAAAGTCTCATCACCTT 59.114 41.667 0.00 0.00 0.00 3.50
3828 3991 5.220989 CCATGCATAAAGTCTCATCACCTTG 60.221 44.000 0.00 0.00 0.00 3.61
3829 3992 4.910195 TGCATAAAGTCTCATCACCTTGT 58.090 39.130 0.00 0.00 0.00 3.16
3830 3993 5.316167 TGCATAAAGTCTCATCACCTTGTT 58.684 37.500 0.00 0.00 0.00 2.83
3831 3994 5.412594 TGCATAAAGTCTCATCACCTTGTTC 59.587 40.000 0.00 0.00 0.00 3.18
3832 3995 5.412594 GCATAAAGTCTCATCACCTTGTTCA 59.587 40.000 0.00 0.00 0.00 3.18
3833 3996 6.094603 GCATAAAGTCTCATCACCTTGTTCAT 59.905 38.462 0.00 0.00 0.00 2.57
3834 3997 7.678218 GCATAAAGTCTCATCACCTTGTTCATC 60.678 40.741 0.00 0.00 0.00 2.92
3835 3998 4.897509 AGTCTCATCACCTTGTTCATCA 57.102 40.909 0.00 0.00 0.00 3.07
3836 3999 5.432680 AGTCTCATCACCTTGTTCATCAT 57.567 39.130 0.00 0.00 0.00 2.45
3837 4000 5.813383 AGTCTCATCACCTTGTTCATCATT 58.187 37.500 0.00 0.00 0.00 2.57
3838 4001 6.243900 AGTCTCATCACCTTGTTCATCATTT 58.756 36.000 0.00 0.00 0.00 2.32
3839 4002 6.150641 AGTCTCATCACCTTGTTCATCATTTG 59.849 38.462 0.00 0.00 0.00 2.32
3840 4003 6.149973 GTCTCATCACCTTGTTCATCATTTGA 59.850 38.462 0.00 0.00 0.00 2.69
3841 4004 6.888088 TCTCATCACCTTGTTCATCATTTGAT 59.112 34.615 0.00 0.00 33.34 2.57
3842 4005 8.048514 TCTCATCACCTTGTTCATCATTTGATA 58.951 33.333 0.00 0.00 33.34 2.15
3843 4006 7.988737 TCATCACCTTGTTCATCATTTGATAC 58.011 34.615 0.00 0.00 33.34 2.24
3844 4007 7.611079 TCATCACCTTGTTCATCATTTGATACA 59.389 33.333 0.00 0.00 33.34 2.29
3845 4008 7.943079 TCACCTTGTTCATCATTTGATACAT 57.057 32.000 0.00 0.00 33.34 2.29
3846 4009 9.631257 ATCACCTTGTTCATCATTTGATACATA 57.369 29.630 0.00 0.00 33.34 2.29
3847 4010 9.112725 TCACCTTGTTCATCATTTGATACATAG 57.887 33.333 0.00 0.00 33.34 2.23
3848 4011 9.112725 CACCTTGTTCATCATTTGATACATAGA 57.887 33.333 0.00 0.00 33.34 1.98
3849 4012 9.334947 ACCTTGTTCATCATTTGATACATAGAG 57.665 33.333 0.00 0.00 33.34 2.43
3850 4013 8.781196 CCTTGTTCATCATTTGATACATAGAGG 58.219 37.037 0.00 0.00 33.34 3.69
3851 4014 9.334947 CTTGTTCATCATTTGATACATAGAGGT 57.665 33.333 0.00 0.00 33.34 3.85
3852 4015 9.685276 TTGTTCATCATTTGATACATAGAGGTT 57.315 29.630 0.00 0.00 33.34 3.50
3853 4016 9.685276 TGTTCATCATTTGATACATAGAGGTTT 57.315 29.630 0.00 0.00 33.34 3.27
3855 4018 8.908786 TCATCATTTGATACATAGAGGTTTCC 57.091 34.615 0.00 0.00 32.63 3.13
3856 4019 7.939039 TCATCATTTGATACATAGAGGTTTCCC 59.061 37.037 0.00 0.00 32.63 3.97
3857 4020 7.206789 TCATTTGATACATAGAGGTTTCCCA 57.793 36.000 0.00 0.00 0.00 4.37
3858 4021 7.815383 TCATTTGATACATAGAGGTTTCCCAT 58.185 34.615 0.00 0.00 0.00 4.00
3859 4022 8.281531 TCATTTGATACATAGAGGTTTCCCATT 58.718 33.333 0.00 0.00 0.00 3.16
3860 4023 8.917088 CATTTGATACATAGAGGTTTCCCATTT 58.083 33.333 0.00 0.00 0.00 2.32
3861 4024 8.519799 TTTGATACATAGAGGTTTCCCATTTC 57.480 34.615 0.00 0.00 0.00 2.17
3862 4025 7.451731 TGATACATAGAGGTTTCCCATTTCT 57.548 36.000 0.00 0.00 0.00 2.52
3863 4026 8.561536 TGATACATAGAGGTTTCCCATTTCTA 57.438 34.615 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.232298 CTTCCAGCTCGGGTGAGGAC 62.232 65.000 4.90 0.00 42.79 3.85
43 53 3.075085 GCGGCGGTTAGTGCGTTAC 62.075 63.158 9.78 0.00 0.00 2.50
45 55 4.973055 TGCGGCGGTTAGTGCGTT 62.973 61.111 9.78 0.00 0.00 4.84
89 99 4.821589 GAAGCGCCGGTGGAGGAG 62.822 72.222 18.41 0.00 0.00 3.69
295 306 2.045242 GCCCCGAAAACCTCCTCC 60.045 66.667 0.00 0.00 0.00 4.30
407 419 1.339727 ACTAAACATCTTGACCCCCGC 60.340 52.381 0.00 0.00 0.00 6.13
416 428 3.369157 GGCGAGGTGGTACTAAACATCTT 60.369 47.826 0.00 0.00 0.00 2.40
487 499 6.643770 AGGTAAGTATGTTACAACGTTGACAG 59.356 38.462 33.66 8.62 0.00 3.51
488 500 6.421501 CAGGTAAGTATGTTACAACGTTGACA 59.578 38.462 33.66 26.60 0.00 3.58
489 501 6.128742 CCAGGTAAGTATGTTACAACGTTGAC 60.129 42.308 33.66 22.06 0.00 3.18
490 502 5.927689 CCAGGTAAGTATGTTACAACGTTGA 59.072 40.000 33.66 15.02 0.00 3.18
492 504 6.100404 TCCAGGTAAGTATGTTACAACGTT 57.900 37.500 0.00 0.00 0.00 3.99
516 528 0.834261 TTGATCACCTGTCGACCCCA 60.834 55.000 14.12 0.00 0.00 4.96
526 538 1.201429 ACGGGCCTTCTTGATCACCT 61.201 55.000 0.84 0.00 0.00 4.00
529 541 1.299648 CCACGGGCCTTCTTGATCA 59.700 57.895 0.84 0.00 0.00 2.92
561 573 1.667151 CCACCAAGTGCAATGTGGG 59.333 57.895 14.14 6.94 43.60 4.61
603 615 0.109689 CGACGTTCACTCTCCCACTC 60.110 60.000 0.00 0.00 0.00 3.51
629 641 1.339097 GACGCATACCCCTCTACCAT 58.661 55.000 0.00 0.00 0.00 3.55
702 716 8.190326 TCAGACCTTAAGAATAAACTGAGACA 57.810 34.615 3.36 0.00 30.14 3.41
703 717 9.490379 TTTCAGACCTTAAGAATAAACTGAGAC 57.510 33.333 3.36 0.00 32.63 3.36
706 720 9.847224 AACTTTCAGACCTTAAGAATAAACTGA 57.153 29.630 3.36 6.59 30.88 3.41
719 733 7.898014 ATTTTACAGGAAACTTTCAGACCTT 57.102 32.000 3.93 0.00 40.21 3.50
746 760 9.807921 AGAAACAAGGTCTAAAGGATGAAAATA 57.192 29.630 0.00 0.00 0.00 1.40
779 793 9.347240 CCTCATGGACTATGAAGATAAATTGTT 57.653 33.333 2.89 0.00 44.84 2.83
821 838 7.361286 GCTGTAGGGTCTCAAATGAAAAGTTAG 60.361 40.741 0.00 0.00 0.00 2.34
834 851 0.106167 ATAGCGGCTGTAGGGTCTCA 60.106 55.000 13.86 0.00 0.00 3.27
848 865 8.733857 ATGAAAAGAAAGAGAAAACAATAGCG 57.266 30.769 0.00 0.00 0.00 4.26
876 893 7.693952 TCAGGAAATTCGCACTTTAATGTATC 58.306 34.615 0.00 0.00 0.00 2.24
886 913 3.685139 TCTCTTCAGGAAATTCGCACT 57.315 42.857 0.00 0.00 0.00 4.40
898 925 5.411053 AGAATTCCGCTTTCTTTCTCTTCAG 59.589 40.000 0.65 0.00 29.12 3.02
909 936 3.559238 TTTCTGCAGAATTCCGCTTTC 57.441 42.857 28.89 0.00 33.54 2.62
910 937 5.841957 ATATTTCTGCAGAATTCCGCTTT 57.158 34.783 28.89 9.65 33.54 3.51
911 938 5.841957 AATATTTCTGCAGAATTCCGCTT 57.158 34.783 28.89 13.84 33.54 4.68
912 939 5.841957 AAATATTTCTGCAGAATTCCGCT 57.158 34.783 28.89 10.29 33.54 5.52
913 940 6.145535 CCTAAATATTTCTGCAGAATTCCGC 58.854 40.000 28.89 6.71 33.54 5.54
914 941 7.227512 AGACCTAAATATTTCTGCAGAATTCCG 59.772 37.037 28.89 15.01 33.54 4.30
915 942 8.457238 AGACCTAAATATTTCTGCAGAATTCC 57.543 34.615 28.89 10.66 33.54 3.01
954 984 1.135333 CCTCCCTCTGTCTACGCTTTC 59.865 57.143 0.00 0.00 0.00 2.62
963 993 4.769345 ATCAAATCTTCCTCCCTCTGTC 57.231 45.455 0.00 0.00 0.00 3.51
984 1014 1.622173 GCCATCAATCCTCCCCCAAAA 60.622 52.381 0.00 0.00 0.00 2.44
1069 1099 3.428999 CCTGTTTACCTGACGTCGATGAT 60.429 47.826 12.58 0.00 0.00 2.45
1085 1115 1.599797 CCGGCGAGGTTTCCTGTTT 60.600 57.895 9.30 0.00 31.76 2.83
1135 1166 3.855689 AAAAACAATCATCAGCTCCCG 57.144 42.857 0.00 0.00 0.00 5.14
1157 1188 1.366082 TCCTCTCCTCATCCCTTCCAA 59.634 52.381 0.00 0.00 0.00 3.53
1159 1190 1.715785 CTCCTCTCCTCATCCCTTCC 58.284 60.000 0.00 0.00 0.00 3.46
1305 1336 1.458588 AGAGGAGGCGGGGATCTTC 60.459 63.158 0.00 0.00 0.00 2.87
1333 1364 0.395312 TCGACAAAGGGGAACTGGTC 59.605 55.000 0.00 0.00 33.37 4.02
1341 1372 3.121738 AGTAAACTGTCGACAAAGGGG 57.878 47.619 20.49 9.94 0.00 4.79
1383 1414 3.428180 CGGTCTGTGTCGAGAATCTGATT 60.428 47.826 1.81 1.81 0.00 2.57
1425 1458 1.152819 CCACCCGGTCGATAGGAGA 60.153 63.158 10.27 0.00 0.00 3.71
1426 1459 2.201022 CCCACCCGGTCGATAGGAG 61.201 68.421 10.27 0.55 0.00 3.69
1427 1460 2.123597 CCCACCCGGTCGATAGGA 60.124 66.667 10.27 0.00 0.00 2.94
1428 1461 3.231736 CCCCACCCGGTCGATAGG 61.232 72.222 0.00 0.00 0.00 2.57
1429 1462 3.231736 CCCCCACCCGGTCGATAG 61.232 72.222 0.00 0.00 0.00 2.08
1431 1464 4.726254 TTCCCCCACCCGGTCGAT 62.726 66.667 0.00 0.00 0.00 3.59
1436 1469 4.360405 CAAGGTTCCCCCACCCGG 62.360 72.222 0.00 0.00 37.58 5.73
1437 1470 4.360405 CCAAGGTTCCCCCACCCG 62.360 72.222 0.00 0.00 37.58 5.28
1460 1561 4.141824 GGAGAGAAGAAGACCGGATGAAAT 60.142 45.833 9.46 0.00 0.00 2.17
1465 1566 2.838637 AGGAGAGAAGAAGACCGGAT 57.161 50.000 9.46 0.00 0.00 4.18
1468 1569 6.702716 ATTAACTAGGAGAGAAGAAGACCG 57.297 41.667 0.00 0.00 0.00 4.79
1472 1573 8.073768 CGAGCTAATTAACTAGGAGAGAAGAAG 58.926 40.741 0.00 0.00 0.00 2.85
1477 1578 7.122353 ACAAACGAGCTAATTAACTAGGAGAGA 59.878 37.037 0.00 0.00 0.00 3.10
1478 1579 7.259161 ACAAACGAGCTAATTAACTAGGAGAG 58.741 38.462 0.00 0.00 0.00 3.20
1479 1580 7.166691 ACAAACGAGCTAATTAACTAGGAGA 57.833 36.000 0.00 0.00 0.00 3.71
1481 1582 9.143631 GTTAACAAACGAGCTAATTAACTAGGA 57.856 33.333 0.00 0.00 32.38 2.94
1482 1583 9.148104 AGTTAACAAACGAGCTAATTAACTAGG 57.852 33.333 8.61 0.00 39.73 3.02
1485 1586 9.659830 CAAAGTTAACAAACGAGCTAATTAACT 57.340 29.630 8.61 0.00 42.00 2.24
1486 1587 9.654417 TCAAAGTTAACAAACGAGCTAATTAAC 57.346 29.630 8.61 0.00 34.31 2.01
1488 1589 9.872757 CTTCAAAGTTAACAAACGAGCTAATTA 57.127 29.630 8.61 0.00 0.00 1.40
1489 1590 7.378728 GCTTCAAAGTTAACAAACGAGCTAATT 59.621 33.333 8.61 0.00 0.00 1.40
1490 1591 6.856426 GCTTCAAAGTTAACAAACGAGCTAAT 59.144 34.615 8.61 0.00 0.00 1.73
1491 1592 6.196571 GCTTCAAAGTTAACAAACGAGCTAA 58.803 36.000 8.61 0.00 0.00 3.09
1492 1593 5.277634 GGCTTCAAAGTTAACAAACGAGCTA 60.278 40.000 8.61 0.00 0.00 3.32
1493 1594 4.497507 GGCTTCAAAGTTAACAAACGAGCT 60.498 41.667 8.61 0.00 0.00 4.09
1494 1595 3.729217 GGCTTCAAAGTTAACAAACGAGC 59.271 43.478 8.61 10.83 0.00 5.03
1495 1596 4.036380 AGGGCTTCAAAGTTAACAAACGAG 59.964 41.667 8.61 1.56 0.00 4.18
1496 1597 3.949113 AGGGCTTCAAAGTTAACAAACGA 59.051 39.130 8.61 0.00 0.00 3.85
1497 1598 4.041723 CAGGGCTTCAAAGTTAACAAACG 58.958 43.478 8.61 0.00 0.00 3.60
1498 1599 4.803613 CACAGGGCTTCAAAGTTAACAAAC 59.196 41.667 8.61 0.00 0.00 2.93
1499 1600 4.707448 TCACAGGGCTTCAAAGTTAACAAA 59.293 37.500 8.61 0.00 0.00 2.83
1500 1601 4.097286 GTCACAGGGCTTCAAAGTTAACAA 59.903 41.667 8.61 0.00 0.00 2.83
1501 1602 3.630312 GTCACAGGGCTTCAAAGTTAACA 59.370 43.478 8.61 0.00 0.00 2.41
1502 1603 3.883489 AGTCACAGGGCTTCAAAGTTAAC 59.117 43.478 0.00 0.00 0.00 2.01
1503 1604 4.164843 AGTCACAGGGCTTCAAAGTTAA 57.835 40.909 0.00 0.00 0.00 2.01
1556 1657 4.033817 GCAAGCAGCATTTTAACACACAAA 59.966 37.500 0.00 0.00 44.79 2.83
1579 1680 0.171455 AACTGAACCTAGCGCTCGAG 59.829 55.000 16.34 8.45 0.00 4.04
1584 1685 3.123116 GTGTCTAAAACTGAACCTAGCGC 59.877 47.826 0.00 0.00 0.00 5.92
1586 1687 5.179555 CCAAGTGTCTAAAACTGAACCTAGC 59.820 44.000 0.00 0.00 0.00 3.42
1613 1716 5.481105 GAAATGGCCTGATTGTTGATTCAA 58.519 37.500 3.32 0.00 0.00 2.69
1634 1737 1.543871 GGCCCTTAACGACAACTGGAA 60.544 52.381 0.00 0.00 0.00 3.53
1650 1753 3.843893 TTAACCGTATAGAAAGGGCCC 57.156 47.619 16.46 16.46 0.00 5.80
1651 1754 4.711399 ACATTAACCGTATAGAAAGGGCC 58.289 43.478 0.00 0.00 0.00 5.80
1652 1755 6.316890 TGAAACATTAACCGTATAGAAAGGGC 59.683 38.462 0.00 0.00 0.00 5.19
1653 1756 7.852971 TGAAACATTAACCGTATAGAAAGGG 57.147 36.000 0.00 0.00 0.00 3.95
1658 1761 9.715121 AGAGTTTTGAAACATTAACCGTATAGA 57.285 29.630 9.08 0.00 41.30 1.98
1664 1767 9.807386 CTAACTAGAGTTTTGAAACATTAACCG 57.193 33.333 9.08 0.00 41.30 4.44
1791 1914 5.576563 TTTCTTCAAGGTATGTTCCAGGA 57.423 39.130 0.00 0.00 0.00 3.86
1792 1915 8.408601 CAATATTTCTTCAAGGTATGTTCCAGG 58.591 37.037 0.00 0.00 0.00 4.45
1793 1916 8.960591 ACAATATTTCTTCAAGGTATGTTCCAG 58.039 33.333 0.00 0.00 0.00 3.86
1794 1917 8.877864 ACAATATTTCTTCAAGGTATGTTCCA 57.122 30.769 0.00 0.00 0.00 3.53
1795 1918 9.788960 GAACAATATTTCTTCAAGGTATGTTCC 57.211 33.333 0.00 0.00 0.00 3.62
1806 1929 9.288576 ACATTGACTGAGAACAATATTTCTTCA 57.711 29.630 8.58 0.00 35.90 3.02
1820 1943 8.585018 TGTTTTATCTGACTACATTGACTGAGA 58.415 33.333 0.00 0.00 0.00 3.27
1853 1976 3.526899 TCCAGACACCCCTTCAATAAGA 58.473 45.455 0.00 0.00 34.37 2.10
1897 2022 2.029380 GGGTTGCACTTTATCCAACACC 60.029 50.000 0.00 0.00 40.32 4.16
1959 2085 6.712241 AGTGTAATTTCTGACTTGACATCG 57.288 37.500 0.00 0.00 0.00 3.84
2018 2144 1.376683 GATACACGCAGGCAACCCA 60.377 57.895 0.00 0.00 37.17 4.51
2068 2194 0.890683 GGCAAGGTGGGACAAATGAG 59.109 55.000 0.00 0.00 44.16 2.90
2101 2228 7.369803 TCTCATCTTTTAGTTTCTGTGCATC 57.630 36.000 0.00 0.00 0.00 3.91
2105 2232 9.212641 TCTGAATCTCATCTTTTAGTTTCTGTG 57.787 33.333 0.00 0.00 0.00 3.66
2179 2306 2.582052 CCCTTTGTGGTTAAGTCTGCA 58.418 47.619 0.00 0.00 0.00 4.41
2332 2462 4.815269 TCAAGGTGTTCACCAAGTTTTTG 58.185 39.130 21.71 15.70 0.00 2.44
2333 2463 5.476091 TTCAAGGTGTTCACCAAGTTTTT 57.524 34.783 21.71 5.59 0.00 1.94
2334 2464 5.476091 TTTCAAGGTGTTCACCAAGTTTT 57.524 34.783 21.71 6.24 0.00 2.43
2335 2465 5.675684 ATTTCAAGGTGTTCACCAAGTTT 57.324 34.783 21.71 6.57 0.00 2.66
2336 2466 5.046663 ACAATTTCAAGGTGTTCACCAAGTT 60.047 36.000 21.71 9.29 0.00 2.66
2337 2467 4.466015 ACAATTTCAAGGTGTTCACCAAGT 59.534 37.500 21.71 5.96 0.00 3.16
2338 2468 5.009854 ACAATTTCAAGGTGTTCACCAAG 57.990 39.130 21.71 14.00 0.00 3.61
2339 2469 6.723298 ATACAATTTCAAGGTGTTCACCAA 57.277 33.333 21.71 9.29 0.00 3.67
2340 2470 6.097554 ACAATACAATTTCAAGGTGTTCACCA 59.902 34.615 21.71 3.43 0.00 4.17
2341 2471 6.512297 ACAATACAATTTCAAGGTGTTCACC 58.488 36.000 13.45 13.45 0.00 4.02
2342 2472 7.920682 AGAACAATACAATTTCAAGGTGTTCAC 59.079 33.333 13.75 0.00 43.74 3.18
2343 2473 8.006298 AGAACAATACAATTTCAAGGTGTTCA 57.994 30.769 13.75 0.00 43.74 3.18
2344 2474 8.352942 AGAGAACAATACAATTTCAAGGTGTTC 58.647 33.333 0.00 0.00 42.37 3.18
2345 2475 8.237811 AGAGAACAATACAATTTCAAGGTGTT 57.762 30.769 0.00 0.00 0.00 3.32
2346 2476 7.823745 AGAGAACAATACAATTTCAAGGTGT 57.176 32.000 0.00 0.00 0.00 4.16
2347 2477 8.137437 ACAAGAGAACAATACAATTTCAAGGTG 58.863 33.333 0.00 0.00 0.00 4.00
2348 2478 8.237811 ACAAGAGAACAATACAATTTCAAGGT 57.762 30.769 0.00 0.00 0.00 3.50
2372 2507 7.599171 ACAATGCCAACTACCTTTTATGTTAC 58.401 34.615 0.00 0.00 0.00 2.50
2395 2530 8.437360 AGCGTATGAAATCAGATGAATTAACA 57.563 30.769 1.61 0.00 0.00 2.41
2418 2553 5.613358 ACAAATGTCACACTAAAGCTAGC 57.387 39.130 6.62 6.62 0.00 3.42
2469 2604 8.257830 AGCAAGTTCTAGAAGCATAAAGTTAC 57.742 34.615 15.28 0.00 0.00 2.50
2473 2608 7.608308 AAGAGCAAGTTCTAGAAGCATAAAG 57.392 36.000 15.28 0.87 0.00 1.85
2492 2627 6.159988 ACATCACTAGACAGTACAAAAGAGC 58.840 40.000 0.00 0.00 32.21 4.09
2532 2667 6.218746 TCAACATGATCGAAGATATGACTGG 58.781 40.000 0.00 0.00 45.12 4.00
2891 3026 4.331168 GCAGATCGTTCAAAAGCTGAGTAT 59.669 41.667 0.00 0.00 34.81 2.12
2957 3092 7.876068 GGAATTCAATGGATTGTTATGCATCAT 59.124 33.333 0.19 0.00 41.37 2.45
3068 3203 7.681939 AAGAAGATTTTTCGCACAAGGTATA 57.318 32.000 0.00 0.00 0.00 1.47
3069 3204 6.575162 AAGAAGATTTTTCGCACAAGGTAT 57.425 33.333 0.00 0.00 0.00 2.73
3077 3226 8.573035 AGGTACATTTAAAGAAGATTTTTCGCA 58.427 29.630 0.00 0.00 0.00 5.10
3079 3228 9.341899 CCAGGTACATTTAAAGAAGATTTTTCG 57.658 33.333 0.00 0.00 0.00 3.46
3089 3238 8.754991 TTCAAACTTCCAGGTACATTTAAAGA 57.245 30.769 0.00 0.00 0.00 2.52
3093 3242 8.160765 TCATCTTCAAACTTCCAGGTACATTTA 58.839 33.333 0.00 0.00 0.00 1.40
3103 3252 6.303054 TGGTACAATCATCTTCAAACTTCCA 58.697 36.000 0.00 0.00 31.92 3.53
3127 3276 8.177119 TCAAAAACTAACATGCCTAGTTCAAT 57.823 30.769 16.94 7.75 38.38 2.57
3158 3308 8.585018 GGGAAATGAAGAGGATAAAACTTGAAA 58.415 33.333 0.00 0.00 0.00 2.69
3183 3333 1.202964 TGGGATTGCATAGCTCCATGG 60.203 52.381 4.97 4.97 0.00 3.66
3300 3459 7.510675 TGGGAAGACATTTTCTAAGGACTAT 57.489 36.000 0.00 0.00 32.51 2.12
3301 3460 6.945636 TGGGAAGACATTTTCTAAGGACTA 57.054 37.500 0.00 0.00 32.51 2.59
3380 3539 8.870160 TTGTGCTTGCCAATATTAATTATGTC 57.130 30.769 0.00 0.00 0.00 3.06
3382 3541 9.531942 TTCTTGTGCTTGCCAATATTAATTATG 57.468 29.630 0.00 0.00 0.00 1.90
3387 3546 9.135189 AGATATTCTTGTGCTTGCCAATATTAA 57.865 29.630 0.00 0.00 0.00 1.40
3422 3581 8.887264 ATAACACCATAAATAAACCAACTGGA 57.113 30.769 1.86 0.00 38.94 3.86
3426 3585 7.704899 GGCAGATAACACCATAAATAAACCAAC 59.295 37.037 0.00 0.00 0.00 3.77
3434 3593 5.360714 CCACTTGGCAGATAACACCATAAAT 59.639 40.000 0.00 0.00 32.39 1.40
3444 3603 5.815581 ACTTAATGTCCACTTGGCAGATAA 58.184 37.500 0.00 0.00 34.44 1.75
3468 3627 6.389091 GGTTAAAACCCCTTATTAAACGTGG 58.611 40.000 0.02 0.00 43.43 4.94
3491 3650 2.048444 AGCTACATGATGCACTTGGG 57.952 50.000 14.71 0.00 0.00 4.12
3505 3664 9.556030 GTGTATCCACAATTTCTAAAAAGCTAC 57.444 33.333 0.00 0.00 41.44 3.58
3507 3666 8.409358 AGTGTATCCACAATTTCTAAAAAGCT 57.591 30.769 0.00 0.00 44.39 3.74
3522 3681 4.941263 TGATTTAGGTGCAAGTGTATCCAC 59.059 41.667 0.00 0.00 42.17 4.02
3542 3701 8.200024 ACTTTACCTATGATGCTAGATGTGAT 57.800 34.615 0.00 0.00 0.00 3.06
3544 3703 7.712639 ACAACTTTACCTATGATGCTAGATGTG 59.287 37.037 0.00 0.00 0.00 3.21
3545 3704 7.796054 ACAACTTTACCTATGATGCTAGATGT 58.204 34.615 0.00 0.00 0.00 3.06
3546 3705 8.668510 AACAACTTTACCTATGATGCTAGATG 57.331 34.615 0.00 0.00 0.00 2.90
3550 3709 8.836413 GCATTAACAACTTTACCTATGATGCTA 58.164 33.333 0.00 0.00 33.99 3.49
3607 3766 3.140144 AGTTTTGATCCCTGGGAAGTTGA 59.860 43.478 21.42 3.38 34.34 3.18
3698 3861 6.553100 AGGTTAATGAATTCAAAGGGTGTTGA 59.447 34.615 13.09 0.00 35.72 3.18
3703 3866 7.010160 TGAAGAGGTTAATGAATTCAAAGGGT 58.990 34.615 13.09 0.00 0.00 4.34
3704 3867 7.466746 TGAAGAGGTTAATGAATTCAAAGGG 57.533 36.000 13.09 0.00 0.00 3.95
3708 3871 7.288852 TGGGTTTGAAGAGGTTAATGAATTCAA 59.711 33.333 13.09 0.00 35.50 2.69
3714 3877 5.319043 AGTGGGTTTGAAGAGGTTAATGA 57.681 39.130 0.00 0.00 0.00 2.57
3715 3878 6.405278 AAAGTGGGTTTGAAGAGGTTAATG 57.595 37.500 0.00 0.00 0.00 1.90
3716 3879 6.839134 AGAAAAGTGGGTTTGAAGAGGTTAAT 59.161 34.615 0.00 0.00 0.00 1.40
3717 3880 6.192044 AGAAAAGTGGGTTTGAAGAGGTTAA 58.808 36.000 0.00 0.00 0.00 2.01
3718 3881 5.762279 AGAAAAGTGGGTTTGAAGAGGTTA 58.238 37.500 0.00 0.00 0.00 2.85
3719 3882 4.610333 AGAAAAGTGGGTTTGAAGAGGTT 58.390 39.130 0.00 0.00 0.00 3.50
3720 3883 4.207955 GAGAAAAGTGGGTTTGAAGAGGT 58.792 43.478 0.00 0.00 0.00 3.85
3721 3884 3.570125 GGAGAAAAGTGGGTTTGAAGAGG 59.430 47.826 0.00 0.00 0.00 3.69
3722 3885 4.207165 TGGAGAAAAGTGGGTTTGAAGAG 58.793 43.478 0.00 0.00 0.00 2.85
3723 3886 4.243793 TGGAGAAAAGTGGGTTTGAAGA 57.756 40.909 0.00 0.00 0.00 2.87
3724 3887 5.337578 TTTGGAGAAAAGTGGGTTTGAAG 57.662 39.130 0.00 0.00 0.00 3.02
3725 3888 5.746990 TTTTGGAGAAAAGTGGGTTTGAA 57.253 34.783 0.00 0.00 0.00 2.69
3726 3889 5.746990 TTTTTGGAGAAAAGTGGGTTTGA 57.253 34.783 0.00 0.00 32.62 2.69
3770 3933 4.593206 TGGAAGGCTAGACAGAGAGAAAAA 59.407 41.667 0.00 0.00 0.00 1.94
3771 3934 4.021016 GTGGAAGGCTAGACAGAGAGAAAA 60.021 45.833 0.00 0.00 0.00 2.29
3772 3935 3.511934 GTGGAAGGCTAGACAGAGAGAAA 59.488 47.826 0.00 0.00 0.00 2.52
3773 3936 3.093057 GTGGAAGGCTAGACAGAGAGAA 58.907 50.000 0.00 0.00 0.00 2.87
3774 3937 2.621929 GGTGGAAGGCTAGACAGAGAGA 60.622 54.545 0.00 0.00 0.00 3.10
3775 3938 1.754226 GGTGGAAGGCTAGACAGAGAG 59.246 57.143 0.00 0.00 0.00 3.20
3776 3939 1.359474 AGGTGGAAGGCTAGACAGAGA 59.641 52.381 0.00 0.00 0.00 3.10
3777 3940 1.859302 AGGTGGAAGGCTAGACAGAG 58.141 55.000 0.00 0.00 0.00 3.35
3778 3941 1.902508 CAAGGTGGAAGGCTAGACAGA 59.097 52.381 0.00 0.00 0.00 3.41
3779 3942 1.065854 CCAAGGTGGAAGGCTAGACAG 60.066 57.143 0.00 0.00 40.96 3.51
3780 3943 0.984230 CCAAGGTGGAAGGCTAGACA 59.016 55.000 0.00 0.00 40.96 3.41
3781 3944 1.276622 TCCAAGGTGGAAGGCTAGAC 58.723 55.000 0.00 0.00 45.00 2.59
3782 3945 3.807309 TCCAAGGTGGAAGGCTAGA 57.193 52.632 0.00 0.00 45.00 2.43
3798 3961 5.023533 TGAGACTTTATGCATGGTACTCC 57.976 43.478 10.16 0.00 0.00 3.85
3799 3962 6.201806 GTGATGAGACTTTATGCATGGTACTC 59.798 42.308 10.16 11.66 0.00 2.59
3800 3963 6.051717 GTGATGAGACTTTATGCATGGTACT 58.948 40.000 10.16 2.26 0.00 2.73
3801 3964 5.237344 GGTGATGAGACTTTATGCATGGTAC 59.763 44.000 10.16 4.69 0.00 3.34
3802 3965 5.130975 AGGTGATGAGACTTTATGCATGGTA 59.869 40.000 10.16 0.00 0.00 3.25
3803 3966 4.080129 AGGTGATGAGACTTTATGCATGGT 60.080 41.667 10.16 5.46 0.00 3.55
3804 3967 4.458397 AGGTGATGAGACTTTATGCATGG 58.542 43.478 10.16 1.97 0.00 3.66
3805 3968 5.356190 ACAAGGTGATGAGACTTTATGCATG 59.644 40.000 10.16 0.00 0.00 4.06
3806 3969 5.503927 ACAAGGTGATGAGACTTTATGCAT 58.496 37.500 3.79 3.79 0.00 3.96
3807 3970 4.910195 ACAAGGTGATGAGACTTTATGCA 58.090 39.130 0.00 0.00 0.00 3.96
3808 3971 5.412594 TGAACAAGGTGATGAGACTTTATGC 59.587 40.000 0.00 0.00 0.00 3.14
3809 3972 7.335171 TGATGAACAAGGTGATGAGACTTTATG 59.665 37.037 0.00 0.00 0.00 1.90
3810 3973 7.397221 TGATGAACAAGGTGATGAGACTTTAT 58.603 34.615 0.00 0.00 0.00 1.40
3811 3974 6.768483 TGATGAACAAGGTGATGAGACTTTA 58.232 36.000 0.00 0.00 0.00 1.85
3812 3975 5.624159 TGATGAACAAGGTGATGAGACTTT 58.376 37.500 0.00 0.00 0.00 2.66
3813 3976 5.233083 TGATGAACAAGGTGATGAGACTT 57.767 39.130 0.00 0.00 0.00 3.01
3814 3977 4.897509 TGATGAACAAGGTGATGAGACT 57.102 40.909 0.00 0.00 0.00 3.24
3815 3978 6.149973 TCAAATGATGAACAAGGTGATGAGAC 59.850 38.462 0.00 0.00 34.30 3.36
3816 3979 6.240145 TCAAATGATGAACAAGGTGATGAGA 58.760 36.000 0.00 0.00 34.30 3.27
3817 3980 6.505044 TCAAATGATGAACAAGGTGATGAG 57.495 37.500 0.00 0.00 34.30 2.90
3818 3981 7.611079 TGTATCAAATGATGAACAAGGTGATGA 59.389 33.333 6.17 0.00 42.54 2.92
3819 3982 7.764331 TGTATCAAATGATGAACAAGGTGATG 58.236 34.615 6.17 0.00 42.54 3.07
3820 3983 7.943079 TGTATCAAATGATGAACAAGGTGAT 57.057 32.000 6.17 0.00 42.54 3.06
3821 3984 7.943079 ATGTATCAAATGATGAACAAGGTGA 57.057 32.000 6.17 0.00 42.54 4.02
3822 3985 9.112725 TCTATGTATCAAATGATGAACAAGGTG 57.887 33.333 6.17 0.00 42.54 4.00
3823 3986 9.334947 CTCTATGTATCAAATGATGAACAAGGT 57.665 33.333 6.17 0.00 42.54 3.50
3824 3987 8.781196 CCTCTATGTATCAAATGATGAACAAGG 58.219 37.037 6.17 4.30 42.54 3.61
3825 3988 9.334947 ACCTCTATGTATCAAATGATGAACAAG 57.665 33.333 6.17 4.87 42.54 3.16
3826 3989 9.685276 AACCTCTATGTATCAAATGATGAACAA 57.315 29.630 6.17 0.00 42.54 2.83
3827 3990 9.685276 AAACCTCTATGTATCAAATGATGAACA 57.315 29.630 6.17 4.11 42.54 3.18
3829 3992 9.342308 GGAAACCTCTATGTATCAAATGATGAA 57.658 33.333 6.17 0.00 42.54 2.57
3830 3993 8.908786 GGAAACCTCTATGTATCAAATGATGA 57.091 34.615 6.17 0.00 43.67 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.